Citrus Sinensis ID: 007982
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 582 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJH6 | 595 | ABC transporter F family | yes | no | 0.931 | 0.910 | 0.838 | 0.0 | |
| Q9UG63 | 623 | ATP-binding cassette sub- | yes | no | 0.891 | 0.833 | 0.658 | 0.0 | |
| Q99LE6 | 628 | ATP-binding cassette sub- | yes | no | 0.891 | 0.826 | 0.654 | 0.0 | |
| Q2KJA2 | 625 | ATP-binding cassette sub- | yes | no | 0.891 | 0.830 | 0.654 | 0.0 | |
| P40024 | 610 | ABC transporter ATP-bindi | yes | no | 0.939 | 0.896 | 0.527 | 1e-168 | |
| Q8T6B7 | 593 | ABC transporter F family | yes | no | 0.915 | 0.898 | 0.508 | 1e-165 | |
| O42943 | 618 | Uncharacterized ABC trans | yes | no | 0.972 | 0.915 | 0.483 | 1e-157 | |
| Q9USH9 | 822 | Uncharacterized ABC trans | no | no | 0.888 | 0.628 | 0.460 | 1e-131 | |
| Q8H0V6 | 715 | ABC transporter F family | no | no | 0.862 | 0.702 | 0.423 | 1e-125 | |
| Q9M1H3 | 723 | ABC transporter F family | no | no | 0.855 | 0.688 | 0.434 | 1e-124 |
| >sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/559 (83%), Positives = 510/559 (91%), Gaps = 17/559 (3%)
Query: 41 SAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRR 100
+ D +S + A+QISDRTCTGVLCSHP SRDIRIESLSVTFHG+DLIVDS LELNYGRR
Sbjct: 37 NGVDSLSSGVDALQISDRTCTGVLCSHPQSRDIRIESLSVTFHGYDLIVDSMLELNYGRR 96
Query: 101 YGLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLKLE 143
YGLLGLNGCGKSTLLTAIG EIEA+DMSSLEAV+SCDEERL+LE
Sbjct: 97 YGLLGLNGCGKSTLLTAIGRREIPIPDQMDIYHLSHEIEATDMSSLEAVVSCDEERLRLE 156
Query: 144 KEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGG 203
KE EIL Q+DGGGE+L+ +YERL+A+DA TAEKRAAEIL+GLGF+K MQAKKT+DFSGG
Sbjct: 157 KEVEILVQQDDGGGERLQSIYERLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKDFSGG 216
Query: 204 WRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVC 263
WRMRIALARALFI PTILLLDEPTNHLDLEACVWLEE+LK FDRILVV+SHSQDFLNGVC
Sbjct: 217 WRMRIALARALFIMPTILLLDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVC 276
Query: 264 TNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKL 323
TNIIHMQ+KQLK+YTGNFDQY QTRSELEENQMKQY+WEQEQI+ MKEYIARFGHGSAKL
Sbjct: 277 TNIIHMQSKQLKYYTGNFDQYCQTRSELEENQMKQYRWEQEQISHMKEYIARFGHGSAKL 336
Query: 324 ARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIY 383
ARQAQSKEKTLAKMERGGLTEKV +D VLVFRF DVGKLPPPVLQFVEV+FGYTPD LIY
Sbjct: 337 ARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFADVGKLPPPVLQFVEVSFGYTPDYLIY 396
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443
KN+DFGVDLDSRVALVGPNGAGKSTLLKLMTG+L P +GMVRRHNHL+IAQ+HQHLAEKL
Sbjct: 397 KNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKL 456
Query: 444 DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503
D+++ AL YM++E+PG EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV+FAWLAY+Q
Sbjct: 457 DLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQ 516
Query: 504 PHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRW 563
P+MLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE Q +T+W
Sbjct: 517 PNMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKW 576
Query: 564 EGDIMDFKLHLKAKAGLSD 582
GDIMDFK HLKAKAGL D
Sbjct: 577 NGDIMDFKRHLKAKAGLED 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/539 (65%), Positives = 426/539 (79%), Gaps = 20/539 (3%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LELN GRRYGL+GLNG GKS LL+A
Sbjct: 71 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 130
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L V+ D ER LEKEAE L A ED E+L
Sbjct: 131 IGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAERL-AHEDAECEKL 189
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 190 MELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 249
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 250 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 309
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 310 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 369
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 370 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 429
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 430 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 489
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 490 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 549
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 550 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 608
|
Homo sapiens (taxid: 9606) |
| >sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/539 (65%), Positives = 427/539 (79%), Gaps = 20/539 (3%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LELN GRRYGL+GLNG GKS LL+A
Sbjct: 76 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 135
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ S+ + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 136 IGKREVPIPEHIDIYHLTREMPPSEKTPLQCVMEVDTERAMLEREAERL-AHEDAECEKL 194
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 195 MELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 254
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 255 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 314
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 315 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 374
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 375 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 434
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 435 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 494
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 495 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 554
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 555 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 613
|
Mus musculus (taxid: 10090) |
| >sp|Q2KJA2|ABCF2_BOVIN ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/539 (65%), Positives = 426/539 (79%), Gaps = 20/539 (3%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTA 117
R TGVL SHP S D I +LS+TFHG +L+ D++LELN GRRYGL+GLNG GKS LL+A
Sbjct: 73 RAVTGVLASHPNSTDAHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 132
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 133 IGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERAMLEREAERL-AHEDAECEKL 191
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 192 LELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 251
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 252 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 311
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 312 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 371
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 372 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 431
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 432 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 491
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 492 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 551
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+N+++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 552 ETIDALADAINDFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 610
|
Bos taurus (taxid: 9913) |
| >sp|P40024|ARB1_YEAST ABC transporter ATP-binding protein ARB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 305/578 (52%), Positives = 401/578 (69%), Gaps = 31/578 (5%)
Query: 23 GKAAAAAASSKAAALQNGSAADKAASEMAAMQI-------SDRTCTGVLCSHPLSRDIRI 75
GK K AA + S D AA E+ M++ SDR TGVL S SRDI++
Sbjct: 26 GKTIRKLGRKKEAAAEE-SEVDAAAREIKMMKLQQDKDGLSDRVVTGVLSSLETSRDIKL 84
Query: 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG---------------- 119
S+S+ FHG LI DS LELNYGRRYGLLG NGCGKST L A+
Sbjct: 85 SSVSLLFHGKVLIQDSGLELNYGRRYGLLGENGCGKSTFLKALATREYPIPEHIDIYLLD 144
Query: 120 -EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGG-GEQLERVYERLEALDASTAEK 177
E S++S+L+ V++ + LK ++ EDG E LE +YER+++LD T E
Sbjct: 145 EPAEPSELSALDYVVTEAQHELKRIEDLVEKTILEDGPESELLEPLYERMDSLDPDTFES 204
Query: 178 RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW 237
RAA IL GLGFNK KKT+D SGGW+MR+ALA+ALF+ PT+LLLD+PT HLDLEACVW
Sbjct: 205 RAAIILIGLGFNKKTILKKTKDMSGGWKMRVALAKALFVKPTLLLLDDPTAHLDLEACVW 264
Query: 238 LEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMK 297
LEE LK+FDR LV++SHSQDFLNGVCTN+I M+ ++L Y GN+D Y +TRSELE NQMK
Sbjct: 265 LEEYLKRFDRTLVLVSHSQDFLNGVCTNMIDMRAQKLTAYGGNYDSYHKTRSELETNQMK 324
Query: 298 QYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFV 357
QY +QE+I +K++IA G A L +QA+S++K L KME GL + VV DKV FRF
Sbjct: 325 QYNKQQEEIQHIKKFIASAG-TYANLVKQAKSRQKILDKMEADGLVQPVVPDKVFSFRFP 383
Query: 358 DVGKLPPPVLQFVEVTFGY--TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415
V +LPPPVL F +++F Y P +Y++L+FGVD+DSR+ALVGPNG GKSTLLK+MTG
Sbjct: 384 QVERLPPPVLAFDDISFHYESNPSENLYEHLNFGVDMDSRIALVGPNGVGKSTLLKIMTG 443
Query: 416 DLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKM--RAAIGRFG 473
+L P G V RH H+++ + QH ++LD+ SAL+++ +Y ++ R +GR+G
Sbjct: 444 ELTPQSGRVSRHTHVKLGVYSQHSQDQLDLTKSALEFVRDKYSNISQDFQFWRGQLGRYG 503
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG 533
LTG+ Q + M LS+GQRSRVVFA LA QP++LLLDEPTN LDI TIDSLA+A+NE++G
Sbjct: 504 LTGEGQTVQMATLSEGQRSRVVFALLALEQPNVLLLDEPTNGLDIPTIDSLADAINEFNG 563
Query: 534 GLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571
G+V+VSHDFRL++++A +I+V EN+ TRW+G I+ +K
Sbjct: 564 GVVVVSHDFRLLDKIAQDIFVVENKTATRWDGSILQYK 601
|
Stimulates 40S and 60S ribosome biogenesis. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8T6B7|ABCF2_DICDI ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/556 (50%), Positives = 386/556 (69%), Gaps = 23/556 (4%)
Query: 44 DKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGL 103
D+ + M+++ T TG L S SRD++IE +++TFHG +L+ D+ +E+N+GRRYGL
Sbjct: 24 DEVQDKFKEMRLNAFTATGALASKESSRDVKIEQVTLTFHGKELLSDTTVEINFGRRYGL 83
Query: 104 LGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLKLEKEA 146
+G NGCGKST + E S+ ++L++VI E+ +K +
Sbjct: 84 IGQNGCGKSTFFQCLAVRELPIPEHIDIFHLSEEAHPSERTALQSVIDDAEKEVKRLEVL 143
Query: 147 EILGAQEDGG-GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR 205
E +E G E+L VYERLE LD +T RA+EIL GLGF KKT+D SGGWR
Sbjct: 144 EERLLEEQGPESEELFDVYERLENLDPTTFVPRASEILIGLGFTSQTMLKKTKDLSGGWR 203
Query: 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTN 265
MR++LA+ALFI PT+LLLDEPTNHLDL ACVWLE+ L +DR L++ISHSQDFLN VCTN
Sbjct: 204 MRVSLAKALFIKPTLLLLDEPTNHLDLGACVWLEDYLANYDRSLIIISHSQDFLNAVCTN 263
Query: 266 IIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLAR 325
IIHM +LK+Y GN+D +V+T++ELE NQMK Y +QE+IA +K +IA G S L R
Sbjct: 264 IIHMTQSKLKYYGGNYDNFVKTKAELEVNQMKAYHKQQEEIAHIKSFIASCGTYS-NLVR 322
Query: 326 QAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPD--NLIY 383
Q +SK+K + KME GL E+V +DK+ F F G+L PP++ F VTF Y+ +++Y
Sbjct: 323 QGKSKQKIIDKMEEAGLVERVQEDKIFNFSFPPCGELAPPIMHFDNVTFSYSGKEADVLY 382
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443
+NLD +DLDSR+ALVGPNGAGKSTLLKLM G + P G +++H+HL++A++HQH E L
Sbjct: 383 RNLDLAIDLDSRIALVGPNGAGKSTLLKLMVGQISPTQGFIKKHSHLKMARYHQHAHEVL 442
Query: 444 DMDMSALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501
D+ + L ++ ++ + E+ R IGRFG+TGKAQ + +SDG +SR++F +A
Sbjct: 443 DLTATPLDFVRSKFAHMNKDTEEWRREIGRFGVTGKAQTEAIGCMSDGIKSRLIFCLMAL 502
Query: 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561
PH+LLLDEPTNHLD+E IDSLA A+N + GG++LVSHDFRLI+QVA EIWVC+N+ +T
Sbjct: 503 ENPHLLLLDEPTNHLDMECIDSLALAINSFPGGMILVSHDFRLISQVAKEIWVCDNKTIT 562
Query: 562 RWEGDIMDFKLHLKAK 577
+W GDI +K HLKA+
Sbjct: 563 KWAGDITSYKNHLKAQ 578
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|O42943|YBP8_SCHPO Uncharacterized ABC transporter ATP-binding protein C16H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16H5.08c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 289/598 (48%), Positives = 402/598 (67%), Gaps = 32/598 (5%)
Query: 5 ASKKKALQKKAAAAAKRGGKAAAAAASSKAAALQNGS--AADKAASEMAAMQISD----R 58
+SK + K+ A A+R + SK +NG D +++ + SD R
Sbjct: 2 SSKSASKLKREAKKAERLAAKGESVKPSKKNGTKNGKDKEVDGVTKDLSELSTSDPIFER 61
Query: 59 TCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI 118
+ +GVL S P+SRDI+I+S +++FHG LI ++ +ELN+G+RYGLLG NG GKST L ++
Sbjct: 62 SASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESV 121
Query: 119 G-----------------EIEASDMSSLEAVISCDEERL-KLEKEAEILGAQEDGGGEQL 160
E E SD+++++ +I ++++ KLE E E L +D L
Sbjct: 122 AARDVEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEELSTADDVDDVLL 181
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
E YE L+ +D ST E +AA IL+GLGF + M AK T+D SGGWRMR+AL+RALFI P++
Sbjct: 182 ESKYEELDDMDPSTFEAKAAMILHGLGFTQEMMAKPTKDMSGGWRMRVALSRALFIKPSL 241
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN-KQLKFYTG 279
LLLDEPTNHLDLEA VWLE L K+D+ILVV SHSQDFLN VCTNII + + KQL +Y G
Sbjct: 242 LLLDEPTNHLDLEAVVWLENYLAKYDKILVVTSHSQDFLNNVCTNIIDLTSKKQLVYYGG 301
Query: 280 NFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMER 339
NFD Y++T+ E E NQMK Y +QE+IA +K++IA G A L RQA+SK+K + KME
Sbjct: 302 NFDIYMRTKEENETNQMKAYLKQQEEIAHIKKFIASAG-TYANLVRQAKSKQKIIDKMEA 360
Query: 340 GGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGY--TPDNLIYKNLDFGVDLDSRVA 397
GL EK + F F +V KLPPP++ F +V F Y D+ +Y++L FG+D+DSRVA
Sbjct: 361 AGLVEKPEPPRQFSFEFDEVRKLPPPIIAFNDVAFSYDGNLDHALYRDLSFGIDMDSRVA 420
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEY 457
+VG NG GKSTLL L+TG L+P++G V R++ L++A++ QH A++L D S L+Y++ Y
Sbjct: 421 IVGKNGTGKSTLLNLITGLLIPIEGNVSRYSGLKMAKYSQHSADQLPYDKSPLEYIMDTY 480
Query: 458 ----PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513
P E ++ R+ +G+FGL+G Q ++ LSDG +SRVVFA LA QPH+LLLDEPT
Sbjct: 481 KPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLLDEPT 540
Query: 514 NHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571
NHLDI +ID+LA+A+N W GG+VLVSHDFRLI QV+ E+W +++ V + + I ++K
Sbjct: 541 NHLDITSIDALAKAINVWTGGVVLVSHDFRLIGQVSKELWEVKDKKVVKLDCSIEEYK 598
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9USH9|YJQ1_SCHPO Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.01 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/541 (46%), Positives = 357/541 (65%), Gaps = 24/541 (4%)
Query: 59 TCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI 118
T TG L S P SRD+++E LSV+ G LI DSEL L GRRYGL+ NG GKSTLL AI
Sbjct: 262 TVTGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAI 321
Query: 119 G-----------------EIEASDMSSLEAVISCDE-ERLKLEKEAEILGAQEDGGGEQL 160
E ++++ +EAV+ +E ER LE E L D +L
Sbjct: 322 ACGLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLEAMMEDLLDDPDKNAVEL 381
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+ + RL L+ ++ R +IL GL F M AK+T + SGGWRMRIALAR LFI PT+
Sbjct: 382 DTIQTRLTDLETENSDHRVYKILRGLQFTDEMIAKRTNELSGGWRMRIALARILFIKPTL 441
Query: 221 LLLDEPTNHLDLEACVWLEETL--KKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT 278
++LDEPTNHLDLEA WLEE L + L++ H+QD LN VCT+IIH+ +++L +Y+
Sbjct: 442 MMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQDTLNEVCTDIIHLYHQKLDYYS 501
Query: 279 GNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFG-HGSAKLARQAQSKEKTLAKM 337
GN+D +++ R+E + K+ + +++ +A ++ + G K + ++ K L K
Sbjct: 502 GNYDTFLKVRAERDVQLAKKARQQEKDMAKLQNKLNMTGSEQQKKAKAKVKAMNKKLEKD 561
Query: 338 ERGG--LTEKVVKDKVLVFRFVDVGK-LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDS 394
++ G L E+++++K LV RF D G +P P ++F +V+F Y I+ L+FG+DL S
Sbjct: 562 KQSGKVLDEEIIQEKQLVIRFEDCGGGIPSPAIKFQDVSFNYPGGPTIFSKLNFGLDLKS 621
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
RVALVGPNGAGK+TL+KL+ + P G V RH+ LR+A F+QH+ ++LDM +SA++++
Sbjct: 622 RVALVGPNGAGKTTLIKLILEKVQPSTGSVVRHHGLRLALFNQHMGDQLDMRLSAVEWLR 681
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
++ E +MR +GR+GLTGK+QV+PM LSDGQR RV+FA+L QPH+LLLDEPTN
Sbjct: 682 TKFGNKPEGEMRRIVGRYGLTGKSQVIPMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTN 741
Query: 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574
LDI+TID+LA+ALN +DGG+V ++HDFRLI+QVA EIW+ +N V ++G+I D+K+ L
Sbjct: 742 ALDIDTIDALADALNNFDGGVVFITHDFRLIDQVAEEIWIVQNGTVKEFDGEIRDYKMML 801
Query: 575 K 575
K
Sbjct: 802 K 802
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/545 (42%), Positives = 339/545 (62%), Gaps = 43/545 (7%)
Query: 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG----------- 119
RDI +++ +V+ G DLIVD + L++GR YGL+G NG GK+T L +
Sbjct: 173 RDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTNC 232
Query: 120 -------EIEASDMSSLEAVISCDEERLKL-EKEAEILGAQE------------------ 153
E+ ++L+ V++ D ER KL E+E +IL Q
Sbjct: 233 QILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPTKDTVE 292
Query: 154 -DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212
D ++LE +Y+RL+A+DA TAE RAA IL GL F MQ K T FSGGWRMRIALAR
Sbjct: 293 GDLMSQRLEEIYKRLDAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALAR 352
Query: 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNK 272
ALFI P +LLLDEPTNHLDL A +WLE L K+ + +V+SH+++FLN V T+IIH+QN+
Sbjct: 353 ALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQNQ 412
Query: 273 QLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEK 332
+L Y GN+D + +TR E +NQ K ++ + + M+ +I +F + +AK A QS+ K
Sbjct: 413 KLSTYKGNYDIFERTREEQVKNQQKAFESSERSRSHMQAFIDKFRY-NAKRASLVQSRIK 471
Query: 333 TLAKMERGGLTEKVVKDKVLVFRFVDVGKLP-PPVLQFVEVTFGYTPDNLIYKNLDFGVD 391
L ++ ++V+ D F F P PP++ F + +FGY L+++NL+FG+D
Sbjct: 472 ALDRLAH---VDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGYPGGPLLFRNLNFGID 528
Query: 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQ 451
LDSR+A+VGPNG GKST+LKL++GDL P G V R +R+A F QH + LD+ + L
Sbjct: 529 LDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLL 588
Query: 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511
YM++ YPG E+K+R+ +G G+TG + PM LS GQ+SRV FA + +++PH+LLLDE
Sbjct: 589 YMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDE 648
Query: 512 PTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571
P+NHLD++ +++L + L + GG+ +VSHD LI+ E+WV + + + G D+K
Sbjct: 649 PSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYK 708
Query: 572 LHLKA 576
L++
Sbjct: 709 KLLQS 713
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 244/561 (43%), Positives = 350/561 (62%), Gaps = 63/561 (11%)
Query: 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG----------- 119
+DI IES SV+ G +L+ ++ + +++G+RYGL+G NG GKSTLL +
Sbjct: 161 KDITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNID 220
Query: 120 ------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGG-GE------------QL 160
E+ + S+L AV+S +EE +KL +EAE L G GE +L
Sbjct: 221 VLLVEQEVVGDEKSALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKL 280
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+Y+RL+ L + AE +A++IL GLGF K MQ + T+ FSGGWRMRI+LARALF+ PT+
Sbjct: 281 AELYDRLQILGSDAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTL 340
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL A +WLEE L ++ + LVV+SH +DFLN VCT IIH+ ++ L FY GN
Sbjct: 341 LLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQNLHFYRGN 400
Query: 281 FD----QYVQTRSELE------ENQMKQYK-----WEQEQIASMKEYIARFGHGSAKLAR 325
FD Y Q R E+ + QMK K +QE++ ++ A AK A
Sbjct: 401 FDGFESGYEQRRKEMNKKFDVYDKQMKAAKRTGNRGQQEKVKDRAKFTA------AKEAS 454
Query: 326 QAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYT--PDNLIY 383
+++SK KT+ + + +D +VF F + +L PP+LQ +EV+F Y PD
Sbjct: 455 KSKSKGKTVDEEGPAPEAPRKWRDYSVVFHFPEPTELTPPLLQLIEVSFSYPNRPD-FRL 513
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443
N+D G+D+ +RVA+VGPNGAGKSTLL L+ GDLVP +G +RR LRI ++ QH + L
Sbjct: 514 SNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHFVDLL 573
Query: 444 DMDMSALQYMIKEYPGNE----EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499
M + +QY+++ +P E +E +RA +G+FGL + P+ LS GQ++RVVF +
Sbjct: 574 TMGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSI 633
Query: 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHE-----IWV 554
+ +PH+LLLDEPTNHLD+++ID+LA+AL+E+ GG+VLVSHD RLI++V E IWV
Sbjct: 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWV 693
Query: 555 CENQAVTRWEGDIMDFKLHLK 575
E+ V + G ++K L+
Sbjct: 694 VEDGTVNFFPGTFEEYKEDLQ 714
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 582 | ||||||
| 397770484 | 605 | ABC transporter GCN1 [Hevea brasiliensis | 0.932 | 0.897 | 0.900 | 0.0 | |
| 224118402 | 602 | ABC transporter family protein [Populus | 0.951 | 0.920 | 0.878 | 0.0 | |
| 255565409 | 600 | ATP-dependent transporter, putative [Ric | 0.932 | 0.905 | 0.894 | 0.0 | |
| 356543500 | 595 | PREDICTED: ABC transporter F family memb | 0.929 | 0.909 | 0.890 | 0.0 | |
| 358348023 | 622 | ATP-binding cassette sub-family F member | 0.984 | 0.921 | 0.830 | 0.0 | |
| 359479445 | 671 | PREDICTED: ABC transporter F family memb | 0.987 | 0.856 | 0.868 | 0.0 | |
| 449456038 | 601 | PREDICTED: ABC transporter F family memb | 0.932 | 0.903 | 0.886 | 0.0 | |
| 356539344 | 595 | PREDICTED: ABC transporter F family memb | 0.934 | 0.914 | 0.884 | 0.0 | |
| 356542652 | 594 | PREDICTED: ABC transporter F family memb | 0.929 | 0.910 | 0.885 | 0.0 | |
| 226490969 | 628 | uncharacterized protein LOC100274199 pre | 0.960 | 0.890 | 0.852 | 0.0 |
| >gi|397770484|gb|AFO64340.1| ABC transporter GCN1 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/561 (90%), Positives = 529/561 (94%), Gaps = 18/561 (3%)
Query: 39 NGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYG 98
NGS D ++ + A+QISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDS LELNYG
Sbjct: 46 NGSV-DNLSNGVGAIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSLLELNYG 104
Query: 99 RRYGLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLK 141
RRYGLLGLNGCGKSTLLTAIG EIEASDMS+L+AVISCDEER+K
Sbjct: 105 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTREIEASDMSALQAVISCDEERVK 164
Query: 142 LEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFS 201
LEKEAEILG QEDGGGE LER+YERLEA+DASTAEKRAAEILYGLGFNK MQ+KKTRDFS
Sbjct: 165 LEKEAEILGTQEDGGGETLERIYERLEAIDASTAEKRAAEILYGLGFNKQMQSKKTRDFS 224
Query: 202 GGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNG 261
GGWRMRIALARALF+NPTILLLDEPTNHLDLEACVWLEETLK+FDRILVV+SHSQDFLNG
Sbjct: 225 GGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKRFDRILVVVSHSQDFLNG 284
Query: 262 VCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 321
VCTNIIHMQNK+LK YTGN+DQYVQTR+ELEENQMKQYKWEQEQIASMKEYIARFGHGSA
Sbjct: 285 VCTNIIHMQNKKLKIYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSA 344
Query: 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNL 381
KLARQAQSKEKTLAKMERGGLTEKVV+DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNL
Sbjct: 345 KLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNL 404
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441
IYKNLDFGVDLDSR+ALVGPNGAGKSTLLKLMTGDLVP DGMVRRHNHLRIAQFHQHLAE
Sbjct: 405 IYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPTDGMVRRHNHLRIAQFHQHLAE 464
Query: 442 KLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501
KLD+DMSALQ+MIKEYPGNEEE+MRAAIG+FGLTGKAQVMPMKNLSDGQRSRV+FAWLAY
Sbjct: 465 KLDLDMSALQFMIKEYPGNEEERMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVIFAWLAY 524
Query: 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561
RQPH+LLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVA EIWVCENQAVT
Sbjct: 525 RQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAEEIWVCENQAVT 584
Query: 562 RWEGDIMDFKLHLKAKAGLSD 582
RWEGDIMDFK HLK KAGLSD
Sbjct: 585 RWEGDIMDFKEHLKKKAGLSD 605
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118402|ref|XP_002331473.1| ABC transporter family protein [Populus trichocarpa] gi|222873551|gb|EEF10682.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/576 (87%), Positives = 532/576 (92%), Gaps = 22/576 (3%)
Query: 24 KAAAAAASSKAAALQNGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFH 83
+AAA AAS QN DK ++ +QISDRTCTGVLCSHPLSRDIRIESLSVTFH
Sbjct: 32 RAAATAASDS----QN-EGVDKLSNGAGVLQISDRTCTGVLCSHPLSRDIRIESLSVTFH 86
Query: 84 GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG-----------------EIEASDM 126
GHDLIVDSELELNYGRRYGLLGLNGCGKSTLL AIG EIEASDM
Sbjct: 87 GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLAAIGCRELPIPDHMDIYHLTREIEASDM 146
Query: 127 SSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGL 186
SSLEAVISCDEERLKLEKEAE+L A++DGGGE L+R+YERLEA+DASTA KRAAEILYGL
Sbjct: 147 SSLEAVISCDEERLKLEKEAEVLAAEDDGGGEALDRIYERLEAMDASTAGKRAAEILYGL 206
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFD 246
GFNK MQ KKTRDFSGGWRMRIALARALF+NPTILLLDEPTNHLDLEACVWLEETLKKFD
Sbjct: 207 GFNKKMQEKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKKFD 266
Query: 247 RILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQI 306
RILVV+SHSQDFLNGVCTNIIHMQNK+LK YTGNFDQYVQTRSELEENQMKQYKWEQ+QI
Sbjct: 267 RILVVVSHSQDFLNGVCTNIIHMQNKKLKIYTGNFDQYVQTRSELEENQMKQYKWEQDQI 326
Query: 307 ASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPV 366
ASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKV +DK+LVFRFV+VGKLPPPV
Sbjct: 327 ASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKILVFRFVNVGKLPPPV 386
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
LQFVEVTFGYTPDNLIYK++DFGVDLDSR+ALVGPNGAGKSTLLKLMTGDLVPLDGMVRR
Sbjct: 387 LQFVEVTFGYTPDNLIYKSIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 446
Query: 427 HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNL 486
HNHLRIAQFHQHLAEKLD++MSALQYMIKEYPGNEEE+MRAAIG+FGLTGKAQVMPMKNL
Sbjct: 447 HNHLRIAQFHQHLAEKLDLEMSALQYMIKEYPGNEEERMRAAIGKFGLTGKAQVMPMKNL 506
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN 546
SDGQRSRV+FAWLAYRQPH+LLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN
Sbjct: 507 SDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN 566
Query: 547 QVAHEIWVCENQAVTRWEGDIMDFKLHLKAKAGLSD 582
QVA EIWVCENQAVTRWEGDIMDFK HLK KAGLSD
Sbjct: 567 QVAEEIWVCENQAVTRWEGDIMDFKKHLKMKAGLSD 602
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565409|ref|XP_002523695.1| ATP-dependent transporter, putative [Ricinus communis] gi|223536999|gb|EEF38635.1| ATP-dependent transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/561 (89%), Positives = 527/561 (93%), Gaps = 18/561 (3%)
Query: 39 NGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYG 98
NGS DK ++ + AMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDS LELNYG
Sbjct: 41 NGSV-DKLSNGIGAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSVLELNYG 99
Query: 99 RRYGLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLK 141
RRYGLLGLNGCGKSTLLTAIG EIEASDMSSL+AVISCDEERLK
Sbjct: 100 RRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSSLQAVISCDEERLK 159
Query: 142 LEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFS 201
LEKE EIL AQ+DGGGE LER+YERLEA+DASTAEKRAAEIL+GLGF+K MQAKKTRDFS
Sbjct: 160 LEKEVEILAAQDDGGGESLERIYERLEAIDASTAEKRAAEILFGLGFSKQMQAKKTRDFS 219
Query: 202 GGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNG 261
GGWRMRIALARALF+NPTILLLDEPTNHLDLEACVWLEETLKKF+RILVV+SHSQDFLNG
Sbjct: 220 GGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKKFERILVVVSHSQDFLNG 279
Query: 262 VCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 321
VCTNIIHMQNK LK YTGN+DQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA
Sbjct: 280 VCTNIIHMQNKTLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 339
Query: 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNL 381
KLARQAQSKEKTLAKMERGGLTEKVV+DKVLVFRFVDVGKLPPPVLQFVEV FGYTP+N+
Sbjct: 340 KLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVAFGYTPENI 399
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441
+Y+NLDFGVDLDSR+ALVGPNGAGKSTLLKLMTGDLVP+DGMVRRHNHLRIAQFHQHLAE
Sbjct: 400 LYRNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPVDGMVRRHNHLRIAQFHQHLAE 459
Query: 442 KLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501
KLD+DMSAL +MI+EYPGNEEEKMRAAIG+FGLTGKAQVMPMKNLSDGQRSRV+FAWLAY
Sbjct: 460 KLDLDMSALHFMIREYPGNEEEKMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVIFAWLAY 519
Query: 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561
RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVA EIWVCENQAVT
Sbjct: 520 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAEEIWVCENQAVT 579
Query: 562 RWEGDIMDFKLHLKAKAGLSD 582
RWEGDIMDFK HLK KAGLSD
Sbjct: 580 RWEGDIMDFKEHLKRKAGLSD 600
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543500|ref|XP_003540198.1| PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max] gi|356543502|ref|XP_003540199.1| PREDICTED: ABC transporter F family member 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/558 (89%), Positives = 527/558 (94%), Gaps = 17/558 (3%)
Query: 42 AADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRY 101
AADK A+ + +QISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRY
Sbjct: 38 AADKLANGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRY 97
Query: 102 GLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLKLEK 144
GLLGLNGCGKSTLLTAIG EIEASDMS+LEAVISCDEERL+LEK
Sbjct: 98 GLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEK 157
Query: 145 EAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204
EAE L AQ+DGGGE LER+YERLEA+DASTAEKRAAEIL+GLGFNK MQAKKTRDFSGGW
Sbjct: 158 EAEALAAQDDGGGEALERIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGW 217
Query: 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCT 264
RMRIALARALF+NPTILLLDEPTNHLDLEACVWLEE LKKF+RILVV+SHSQDFLNGVCT
Sbjct: 218 RMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCT 277
Query: 265 NIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLA 324
NIIHMQNK+LK +TGN+DQYVQTR+ELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLA
Sbjct: 278 NIIHMQNKKLKLFTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLA 337
Query: 325 RQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYK 384
RQAQSKEKTLAKMERGGL EKVV+DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYK
Sbjct: 338 RQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYK 397
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444
NLDFGVDLDSR+ALVGPNGAGKSTLLKLMTGDL PLDGMVRRHNHLRIAQ+HQHLAEKLD
Sbjct: 398 NLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQYHQHLAEKLD 457
Query: 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504
++MSALQYMIKEYPGNEEE+MRAAIG+FGL+GKAQVMPMKNLSDGQRSRV+FAWLAYRQP
Sbjct: 458 LEMSALQYMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQP 517
Query: 505 HMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564
H+LLLDEPTNHLDIETIDSLAEALNEWDGG+VLVSHDFRLINQVAHEIWVC +QAVTRWE
Sbjct: 518 HLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWE 577
Query: 565 GDIMDFKLHLKAKAGLSD 582
GDIMDFK HL++KAGLSD
Sbjct: 578 GDIMDFKEHLRSKAGLSD 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348023|ref|XP_003638049.1| ATP-binding cassette sub-family F member [Medicago truncatula] gi|355503984|gb|AES85187.1| ATP-binding cassette sub-family F member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/631 (83%), Positives = 554/631 (87%), Gaps = 58/631 (9%)
Query: 1 MVSDASKKKALQKKAAAAAKRGGKAAAAAASSKAAALQNGSAADKAASEMAAMQISDRTC 60
MVS+ASKKKA QKKAAAAAKRGGK AA ++ A D A+ + +QISDRTC
Sbjct: 1 MVSEASKKKAAQKKAAAAAKRGGKVAAVSSKK---------AVDSVANGIGDIQISDRTC 51
Query: 61 TGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG- 119
TGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG
Sbjct: 52 TGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGC 111
Query: 120 ----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV 163
EIEASDMS+LEAVISCDEERLKLEKEAEILGAQEDGGGE LERV
Sbjct: 112 RELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLKLEKEAEILGAQEDGGGEALERV 171
Query: 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223
+ERLEA+DASTAEKRAAEIL+GLGFNK MQAKKTRDFSGGWRMRIALARALF+NPTILLL
Sbjct: 172 FERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLL 231
Query: 224 DEPTNHL--------------------------------DLEACVWLEETLKKFDRILVV 251
DEPTNHL DLEACVWLEE LKKFDRILVV
Sbjct: 232 DEPTNHLGIPLPRKEISSSSENMSFDALYHHGLCCALDADLEACVWLEENLKKFDRILVV 291
Query: 252 ISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKE 311
ISHSQDFLNGVCTNIIHMQNK+LKFYTGN+DQYVQTR+ELEENQMKQY+WEQEQIASMKE
Sbjct: 292 ISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKE 351
Query: 312 YIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVE 371
YIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVV+DK+LVFRFVDVGKLPPPVLQFVE
Sbjct: 352 YIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVE 411
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431
VTFGYTPDNLIYKN+DFGVDLDSR+ALVGPNGAGKST LKLMTGDLVPLDGMVRRHNHLR
Sbjct: 412 VTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLR 471
Query: 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491
IAQFHQHL EKLD+++SALQ+MIKEYPGNEEEKMRAAIG+FGL+GKAQVMPM+NLSDGQR
Sbjct: 472 IAQFHQHLTEKLDLELSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMRNLSDGQR 531
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHE 551
SRV+FAWLAYRQPH+LLLDEPTNHLDIETIDSLAEALNEWDGG+VLVSHDFRLINQVAHE
Sbjct: 532 SRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHE 591
Query: 552 IWVCENQAVTRWEGDIMDFKLHLKAKAGLSD 582
IWVC +Q VTRWEGDIMDFKLHLK KAGLSD
Sbjct: 592 IWVCADQTVTRWEGDIMDFKLHLKEKAGLSD 622
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479445|ref|XP_002276693.2| PREDICTED: ABC transporter F family member 1-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1044 bits (2700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/603 (86%), Positives = 557/603 (92%), Gaps = 28/603 (4%)
Query: 1 MVSDASKKKALQKKAAAAAKRGGKAAAAAASSKAAA-----LQNGSAADKAASEMAAMQI 55
MVSDASKKKA KKAAAAAKRGGK+AAAA+S AA+ +QNG +MA M+I
Sbjct: 74 MVSDASKKKAAAKKAAAAAKRGGKSAAAASSKAAASAAAADVQNG------VDKMADMKI 127
Query: 56 SDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLL 115
SDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVD+ELELNYGRRYGLLGLNGCGKSTLL
Sbjct: 128 SDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDTELELNYGRRYGLLGLNGCGKSTLL 187
Query: 116 TAIG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGE 158
TAIG EIEASDMS+LEAVISCDEERLKLEKEAE+L AQ+DGGGE
Sbjct: 188 TAIGCRELPIPEHMDIHHLTREIEASDMSALEAVISCDEERLKLEKEAEVLAAQDDGGGE 247
Query: 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
L+RVYERLEA+DASTAEKRAAEIL+GLGFNKTMQAKKT+DFSGGWRMRIALARALF+NP
Sbjct: 248 ALDRVYERLEAMDASTAEKRAAEILFGLGFNKTMQAKKTQDFSGGWRMRIALARALFMNP 307
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT 278
TILLLDEPTNHLDLEACVWLEETLK FDRILVV+SHSQDFLNGVCTNIIHMQN++LK YT
Sbjct: 308 TILLLDEPTNHLDLEACVWLEETLKNFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKLYT 367
Query: 279 GNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKME 338
GN+DQYVQTR+ELEENQMKQYKWEQ+QIASMKEYIARFGHGSAKLARQAQSKEKTLAKME
Sbjct: 368 GNYDQYVQTRAELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKME 427
Query: 339 RGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVAL 398
RGGLTEKVV+DK+LVFRF DVGKLPPPVLQFVEVTFGYTPDNLIYKN+DFGVDLDSR+AL
Sbjct: 428 RGGLTEKVVRDKILVFRFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIAL 487
Query: 399 VGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYP 458
VGPNGAGKSTLLKLMTGDL P+DGMVRRHNHLRIAQFHQHL EKLD++MSAL YM++EYP
Sbjct: 488 VGPNGAGKSTLLKLMTGDLFPIDGMVRRHNHLRIAQFHQHLTEKLDLEMSALLYMMREYP 547
Query: 459 GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
GNEEEKMRAAIG+FGLTGKAQVMPMKNLSDGQRSRV+FAWLAYRQPHMLLLDEPTNHLDI
Sbjct: 548 GNEEEKMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHMLLLDEPTNHLDI 607
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKA 578
ETIDSLAEALNEWDGGLVLVSHDFRLINQVA EIWVCENQ VTRWEGDIMDFK HLK+KA
Sbjct: 608 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCENQKVTRWEGDIMDFKEHLKSKA 667
Query: 579 GLS 581
GLS
Sbjct: 668 GLS 670
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456038|ref|XP_004145757.1| PREDICTED: ABC transporter F family member 1-like [Cucumis sativus] gi|449526339|ref|XP_004170171.1| PREDICTED: ABC transporter F family member 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/562 (88%), Positives = 528/562 (93%), Gaps = 19/562 (3%)
Query: 38 QNGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNY 97
QNG DK A+ + A+Q+SDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNY
Sbjct: 42 QNG--VDKLANGVDALQLSDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNY 99
Query: 98 GRRYGLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERL 140
GRRYGLLGLNGCGKSTLL AIG EIEASDMSSLEAVISCDEERL
Sbjct: 100 GRRYGLLGLNGCGKSTLLAAIGCRELPIPEHMDIYHLSREIEASDMSSLEAVISCDEERL 159
Query: 141 KLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDF 200
KLE+EAE L AQ+DGGGEQL+R+YERLEALDA+TAEKRAAEILYGLGFNK MQAKKTRDF
Sbjct: 160 KLEQEAESLAAQDDGGGEQLDRIYERLEALDAATAEKRAAEILYGLGFNKQMQAKKTRDF 219
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLN 260
SGGWRMRIALARALF+NPT+LLLDEPTNHLDLEACVWLEE LKKFDRILVV+SHSQDFLN
Sbjct: 220 SGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLN 279
Query: 261 GVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGS 320
GVCTNIIHMQN++LK YTGN+DQYVQTRSELEENQMK YKWEQ+QIASMKEYIARFGHGS
Sbjct: 280 GVCTNIIHMQNRKLKIYTGNYDQYVQTRSELEENQMKMYKWEQDQIASMKEYIARFGHGS 339
Query: 321 AKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN 380
AKLARQAQSKEKTLAKMERGGLTEKVV+DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN
Sbjct: 340 AKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN 399
Query: 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA 440
LIY+NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA
Sbjct: 400 LIYRNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA 459
Query: 441 EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500
EKLD+++SALQ+MI+EYPGNEEEKMR AIG+FGL+GKAQVMPMKNLSDGQRSRV+FAWLA
Sbjct: 460 EKLDLEVSALQFMIREYPGNEEEKMRGAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLA 519
Query: 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
+RQPH+LLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVA EIWVCENQAV
Sbjct: 520 WRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAEEIWVCENQAV 579
Query: 561 TRWEGDIMDFKLHLKAKAGLSD 582
T+WEGDIMDFK HLK KAGL+D
Sbjct: 580 TKWEGDIMDFKAHLKMKAGLAD 601
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539344|ref|XP_003538158.1| PREDICTED: ABC transporter F family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/561 (88%), Positives = 528/561 (94%), Gaps = 17/561 (3%)
Query: 39 NGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYG 98
+ AADK A+ +A +QISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYG
Sbjct: 35 SSKAADKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYG 94
Query: 99 RRYGLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLK 141
RRYGLLGLNGCGKSTLLTAIG EI+ASDMS+LEAVISCDEERLK
Sbjct: 95 RRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIDASDMSALEAVISCDEERLK 154
Query: 142 LEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFS 201
LEKEAE L AQ+DGGGE LER+YERL+ALDA+TAEKRAAEIL+GLGF+K MQAKKTRDFS
Sbjct: 155 LEKEAEALAAQDDGGGESLERIYERLDALDAATAEKRAAEILHGLGFDKQMQAKKTRDFS 214
Query: 202 GGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNG 261
GGWRMRIALARALF+NPTILLLDEPTNHLDLEACVWLEE+LKKF+RILVVISHSQDFLNG
Sbjct: 215 GGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNG 274
Query: 262 VCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 321
VCTNIIHMQ+K+LK YTGN+DQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA
Sbjct: 275 VCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 334
Query: 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNL 381
KLARQAQSKEKTLAKMERGGL EKVV+DKVLVFRF DVGKLPPPVLQFVEV+FGYTPDNL
Sbjct: 335 KLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNL 394
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441
IYKN+DFGVDLDSRVALVGPNGAGKSTLLKLMTGDL+P DGMVRRHNHLRIAQ+HQHLAE
Sbjct: 395 IYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAE 454
Query: 442 KLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501
KLDM+MSALQ+MIKEYPGNEEEKMRAAIG+FGL+GKAQVMPMKNLSDGQRSRV+FAWLA+
Sbjct: 455 KLDMEMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAW 514
Query: 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561
RQP MLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVC NQ+VT
Sbjct: 515 RQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVT 574
Query: 562 RWEGDIMDFKLHLKAKAGLSD 582
RWEGDIM+FK HLK+KAGLSD
Sbjct: 575 RWEGDIMEFKAHLKSKAGLSD 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542652|ref|XP_003539780.1| PREDICTED: ABC transporter F family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/558 (88%), Positives = 527/558 (94%), Gaps = 17/558 (3%)
Query: 42 AADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRY 101
AA+K A+ +A +QISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRY
Sbjct: 37 AANKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRY 96
Query: 102 GLLGLNGCGKSTLLTAIG-----------------EIEASDMSSLEAVISCDEERLKLEK 144
GLLGLNGCGKSTLLTAIG EI+ASDMS+LEAVISCDEERLKLEK
Sbjct: 97 GLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIDASDMSALEAVISCDEERLKLEK 156
Query: 145 EAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204
EAE+L AQ+DGGGE LER+YERL+ALDA+TAEKRAAEIL+GLGF+K MQAKKTRDFSGGW
Sbjct: 157 EAEVLAAQDDGGGESLERIYERLDALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGW 216
Query: 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCT 264
RMRIALARALF+NPTILLLDEPTNHLDLEACVWLEE+LKKF+RILVVISHSQDFLNGVCT
Sbjct: 217 RMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCT 276
Query: 265 NIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLA 324
NIIHMQ+K+LK YTGN+DQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLA
Sbjct: 277 NIIHMQSKKLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLA 336
Query: 325 RQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYK 384
RQAQSKEKTLAKMERGGL EKVV+DKVLVFRF DVGKLPPPVLQFVEV+FGYTPDNLIYK
Sbjct: 337 RQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYK 396
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444
N+DFGVDLDSRVALVGPNGAGKSTLLKLMTGDL+P DGMVRRHNHLRIAQ+HQHLAEKLD
Sbjct: 397 NIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLD 456
Query: 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504
M+MSALQ+MIKEYPGNEEEKMR AIG+FGL+GKAQVMPMKNLSDGQRSRV+FAWLA+RQP
Sbjct: 457 MEMSALQFMIKEYPGNEEEKMRGAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQP 516
Query: 505 HMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564
MLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVC NQ+VTRWE
Sbjct: 517 QMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWE 576
Query: 565 GDIMDFKLHLKAKAGLSD 582
GDIM+FK HLK+KAGLSD
Sbjct: 577 GDIMEFKAHLKSKAGLSD 594
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226490969|ref|NP_001142043.1| uncharacterized protein LOC100274199 precursor [Zea mays] gi|194706882|gb|ACF87525.1| unknown [Zea mays] gi|413921735|gb|AFW61667.1| hypothetical protein ZEAMMB73_363989 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/584 (85%), Positives = 537/584 (91%), Gaps = 25/584 (4%)
Query: 16 AAAAKRGGKAAAAAASSKAAALQNGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRI 75
AAAAKRG K ++SS A A K+ +AA+++SDRTCTGVL SHPLSRDI I
Sbjct: 53 AAAAKRGAKVPTPSSSSSADA--------KSIGAVAALKLSDRTCTGVLASHPLSRDIHI 104
Query: 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG---------------- 119
ESLS+TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG
Sbjct: 105 ESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLT 164
Query: 120 -EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKR 178
EIEASDMS+L+AV+ CDEER+KLEKEAEIL AQ+DGGG+ L+RVYERLEA+DASTAEKR
Sbjct: 165 HEIEASDMSALQAVVCCDEERMKLEKEAEILAAQDDGGGDALDRVYERLEAIDASTAEKR 224
Query: 179 AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL 238
AAEILYGLGFNK MQAKKTRDFSGGWRMRIALARALF+NPTILLLDEPTNHLDLEACVWL
Sbjct: 225 AAEILYGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWL 284
Query: 239 EETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQ 298
EETLKKFDRILVVISHSQDFLNGVCTNIIHMQNK+LK YTGN+DQY+QTRSELEENQMKQ
Sbjct: 285 EETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYIQTRSELEENQMKQ 344
Query: 299 YKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVD 358
++WEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVV+DK+LVFRF +
Sbjct: 345 FRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFTN 404
Query: 359 VGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418
VGKLPPPVLQFVEVTFGYTPDNL+YK LDFGVDLDSR+ALVGPNGAGKSTLLKLMTG+LV
Sbjct: 405 VGKLPPPVLQFVEVTFGYTPDNLLYKKLDFGVDLDSRIALVGPNGAGKSTLLKLMTGELV 464
Query: 419 PLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKA 478
PLDGMVRRHNHLRIAQFHQHLAEKLD+DMSALQYM+KEYPGNEEE+MRAA+G+FGL+GKA
Sbjct: 465 PLDGMVRRHNHLRIAQFHQHLAEKLDLDMSALQYMMKEYPGNEEERMRAAVGKFGLSGKA 524
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLV 538
QVMPM+NLSDGQRSRV+FAWLAYRQP +LLLDEPTNHLDIETIDSLAEALNEWDGGLVLV
Sbjct: 525 QVMPMRNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLV 584
Query: 539 SHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKAGLSD 582
SHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK HL++KA LSD
Sbjct: 585 SHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKEHLRSKACLSD 628
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 582 | ||||||
| TAIR|locus:2159300 | 595 | ABCF1 "ATP-binding cassette F1 | 0.795 | 0.778 | 0.870 | 2.1e-246 | |
| UNIPROTKB|Q75MJ1 | 634 | ABCF2 "ATP-binding cassette, s | 0.891 | 0.818 | 0.636 | 1.6e-180 | |
| UNIPROTKB|Q9UG63 | 623 | ABCF2 "ATP-binding cassette su | 0.891 | 0.833 | 0.636 | 1.6e-180 | |
| RGD|1304942 | 627 | Abcf2 "ATP-binding cassette, s | 0.891 | 0.827 | 0.632 | 2.7e-180 | |
| MGI|MGI:1351657 | 628 | Abcf2 "ATP-binding cassette, s | 0.891 | 0.826 | 0.632 | 5.5e-180 | |
| UNIPROTKB|Q2KJA2 | 625 | ABCF2 "ATP-binding cassette su | 0.891 | 0.830 | 0.632 | 1.5e-179 | |
| UNIPROTKB|F1SSL4 | 572 | ABCF2 "Uncharacterized protein | 0.891 | 0.907 | 0.632 | 1.9e-179 | |
| ZFIN|ZDB-GENE-030131-8714 | 613 | abcf2a "ATP-binding cassette, | 0.891 | 0.846 | 0.623 | 2.7e-178 | |
| UNIPROTKB|F1NIH9 | 623 | ABCF2 "Uncharacterized protein | 0.886 | 0.828 | 0.614 | 4.9e-172 | |
| UNIPROTKB|F1NII0 | 620 | ABCF2 "Uncharacterized protein | 0.888 | 0.833 | 0.618 | 4.9e-172 |
| TAIR|locus:2159300 ABCF1 "ATP-binding cassette F1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2146 (760.5 bits), Expect = 2.1e-246, Sum P(2) = 2.1e-246
Identities = 403/463 (87%), Positives = 439/463 (94%)
Query: 120 EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA 179
EIEA+DMSSLEAV+SCDEERL+LEKE EIL Q+DGGGE+L+ +YERL+A+DA TAEKRA
Sbjct: 133 EIEATDMSSLEAVVSCDEERLRLEKEVEILVQQDDGGGERLQSIYERLDAMDAETAEKRA 192
Query: 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE 239
AEIL+GLGF+K MQAKKT+DFSGGWRMRIALARALFI PTILLLDEPTNHLDLEACVWLE
Sbjct: 193 AEILFGLGFDKEMQAKKTKDFSGGWRMRIALARALFIMPTILLLDEPTNHLDLEACVWLE 252
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQY 299
E+LK FDRILVV+SHSQDFLNGVCTNIIHMQ+KQLK+YTGNFDQY QTRSELEENQMKQY
Sbjct: 253 ESLKNFDRILVVVSHSQDFLNGVCTNIIHMQSKQLKYYTGNFDQYCQTRSELEENQMKQY 312
Query: 300 KWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDV 359
+WEQEQI+ MKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKV +D VLVFRF DV
Sbjct: 313 RWEQEQISHMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFADV 372
Query: 360 GKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP 419
GKLPPPVLQFVEV+FGYTPD LIYKN+DFGVDLDSRVALVGPNGAGKSTLLKLMTG+L P
Sbjct: 373 GKLPPPVLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHP 432
Query: 420 LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ 479
+GMVRRHNHL+IAQ+HQHLAEKLD+++ AL YM++E+PG EEEKMRAAIGRFGLTGKAQ
Sbjct: 433 TEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQ 492
Query: 480 VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVS 539
VMPMKNLSDGQRSRV+FAWLAY+QP+MLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVS
Sbjct: 493 VMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVS 552
Query: 540 HDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKAGLSD 582
HDFRLINQVAHEIWVCE Q +T+W GDIMDFK HLKAKAGL D
Sbjct: 553 HDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAKAGLED 595
|
|
| UNIPROTKB|Q75MJ1 ABCF2 "ATP-binding cassette, sub-family F (GCN20), member 2, isoform CRA_d" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
Identities = 343/539 (63%), Positives = 413/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 71 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 130
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L V+ D ER LEKEAE L A ED E+L
Sbjct: 131 IGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAERL-AHEDAECEKL 189
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 190 MELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 249
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 250 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 309
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 310 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 369
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 370 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 429
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 430 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 489
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 490 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 549
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 550 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 608
|
|
| UNIPROTKB|Q9UG63 ABCF2 "ATP-binding cassette sub-family F member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
Identities = 343/539 (63%), Positives = 413/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 71 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 130
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L V+ D ER LEKEAE L A ED E+L
Sbjct: 131 IGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAERL-AHEDAECEKL 189
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 190 MELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 249
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 250 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 309
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 310 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 369
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 370 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 429
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 430 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 489
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 490 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 549
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 550 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 608
|
|
| RGD|1304942 Abcf2 "ATP-binding cassette, subfamily F (GCN20), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
Identities = 341/539 (63%), Positives = 414/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 75 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 134
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
+G E+ SD + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 135 VGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERAMLEREAERL-AHEDAECEKL 193
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 194 MELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 253
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 254 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 313
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 314 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 373
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 374 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 433
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 434 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 493
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 494 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 553
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 554 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 612
|
|
| MGI|MGI:1351657 Abcf2 "ATP-binding cassette, sub-family F (GCN20), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1747 (620.0 bits), Expect = 5.5e-180, P = 5.5e-180
Identities = 341/539 (63%), Positives = 414/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 76 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 135
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ S+ + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 136 IGKREVPIPEHIDIYHLTREMPPSEKTPLQCVMEVDTERAMLEREAERL-AHEDAECEKL 194
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 195 MELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 254
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 255 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 314
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 315 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 374
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 375 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 434
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 435 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 494
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 495 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 554
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 555 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 613
|
|
| UNIPROTKB|Q2KJA2 ABCF2 "ATP-binding cassette sub-family F member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1743 (618.6 bits), Expect = 1.5e-179, P = 1.5e-179
Identities = 341/539 (63%), Positives = 413/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 73 RAVTGVLASHPNSTDAHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 132
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 133 IGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERAMLEREAERL-AHEDAECEKL 191
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 192 LELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 251
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 252 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 311
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 312 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 371
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 372 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 431
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 432 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 491
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 492 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 551
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+N+++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 552 ETIDALADAINDFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 610
|
|
| UNIPROTKB|F1SSL4 ABCF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1742 (618.3 bits), Expect = 1.9e-179, P = 1.9e-179
Identities = 341/539 (63%), Positives = 413/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 20 RAVTGVLASHPNSTDAHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 79
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 80 IGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERAMLEREAERL-AHEDAECEKL 138
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 139 LELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 198
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV++SHSQDFLNGVCTNIIHM NK+LK+YTGN
Sbjct: 199 LLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGN 258
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 259 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 318
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F YT D IY NL+FG+DLD+RVALV
Sbjct: 319 GLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALV 378
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 379 GPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPE 438
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GL+GK QV P++NLSDGQ+ RV AWLA++ PHML LDEPTNHLDI
Sbjct: 439 IKEKEEMRKIIGRYGLSGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 498
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LA+A+NE++GG++LVSHDFRLI QVA EIWVCE Q +T+W GDI+ +K HLK+K
Sbjct: 499 ETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 557
|
|
| ZFIN|ZDB-GENE-030131-8714 abcf2a "ATP-binding cassette, sub-family F (GCN20), member 2a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
Identities = 336/539 (62%), Positives = 414/539 (76%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I SLS+TFHG +L+ D+ LE GKS LL+A
Sbjct: 68 RAVTGVLASHPNSTDVHISSLSLTFHGQELLSDTSLELNSGRRYGLIGLNGTGKSMLLSA 127
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
I E+ S+ ++L+ V+ DEER+KLEKEAE L A ED E+L
Sbjct: 128 ISHREVPIPEHIDIYHLTREMAPSEKTALQCVMEVDEERIKLEKEAERL-AHEDSECEKL 186
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA A RA+ IL+GLGF +MQ KK +DFSGGWRMR+ALARALF+ P +
Sbjct: 187 MELYERLEELDADKASMRASRILHGLGFTTSMQQKKLKDFSGGWRMRVALARALFLKPFM 246
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE L +F RILV+ISHSQDFLNGVCTNIIH+ ++LK+YTGN
Sbjct: 247 LLLDEPTNHLDLDACVWLEEELSQFKRILVLISHSQDFLNGVCTNIIHLHQRKLKYYTGN 306
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 307 YDQYVKTREELEENQMKRFNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMVAS 366
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALV 399
GLTE+VV DK L F F GK+PPPV+ V+F Y+ + IYKNL+FG+DLD+RVALV
Sbjct: 367 GLTERVVNDKTLSFYFPPCGKIPPPVIMVQNVSFRYSENTPYIYKNLEFGIDLDTRVALV 426
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG 459
GPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+L++D+S L+YM+K YP
Sbjct: 427 GPNGAGKSTLLKLLTGELLPSDGMIRKHSHVKIGRYHQHLTEQLELDLSPLEYMMKCYPE 486
Query: 460 -NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV FAWLA + PHML LDEPTNHLDI
Sbjct: 487 IKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCFAWLARQNPHMLFLDEPTNHLDI 546
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
ETID+LAEA+N+++GG++LVSHDFRL QVA EIWVCE Q +T+W DI+ +K HLK+K
Sbjct: 547 ETIDALAEAINDFEGGMMLVSHDFRLTQQVAQEIWVCEKQTITKWSRDILAYKEHLKSK 605
|
|
| UNIPROTKB|F1NIH9 ABCF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 333/542 (61%), Positives = 409/542 (75%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 71 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 130
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 131 IGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERSMLEREAERL-AHEDAECEKL 189
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 190 MELYERLEELDADKAEARASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 249
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV+ISHSQDFLNG+CTNIIHM N++LK+YTGN
Sbjct: 250 LLLDEPTNHLDLDACVWLEEELKTFKRILVLISHSQDFLNGICTNIIHMHNRKLKYYTGN 309
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 310 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 369
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTF----GYTPDNLIYKNLDFGVDLDSRV 396
GLTE+VV DK + + G VL + + + G P IY NLDFG+DLD+RV
Sbjct: 370 GLTERVVNDKRMSLHELLQGSSKGCVL-LLHIVYNDLCGLQP--WIYNNLDFGIDLDTRV 426
Query: 397 ALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE 456
ALVGPNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K
Sbjct: 427 ALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKC 486
Query: 457 YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515
YP E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV FAWLA++ PHML LDEPTNH
Sbjct: 487 YPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCFAWLAWQNPHMLFLDEPTNH 546
Query: 516 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575
LDIETID+LA+A+N+++GG++LVSHDFRLI QVA EIWVCE Q +T+W+GDI+ +K HLK
Sbjct: 547 LDIETIDALADAINDFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWQGDILAYKEHLK 606
Query: 576 AK 577
+K
Sbjct: 607 SK 608
|
|
| UNIPROTKB|F1NII0 ABCF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 333/538 (61%), Positives = 407/538 (75%)
Query: 58 RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTA 117
R TGVL SHP S D+ I +LS+TFHG +L+ D++LE GKS LL+A
Sbjct: 71 RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSA 130
Query: 118 IG-----------------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160
IG E+ SD + L+ V+ D ER LE+EAE L A ED E+L
Sbjct: 131 IGKREVPIPEHIDIYHLTREMPPSDKTPLQCVMEVDTERSMLEREAERL-AHEDAECEKL 189
Query: 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
+YERLE LDA AE RA+ IL+GLGF MQ KK +DFSGGWRMR+ALARALFI P +
Sbjct: 190 MELYERLEELDADKAEARASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFM 249
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
LLLDEPTNHLDL+ACVWLEE LK F RILV+ISHSQDFLNG+CTNIIHM N++LK+YTGN
Sbjct: 250 LLLDEPTNHLDLDACVWLEEELKTFKRILVLISHSQDFLNGICTNIIHMHNRKLKYYTGN 309
Query: 281 FDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG 340
+DQYV+TR ELEENQMK++ WEQ+QIA MK YIARFGHGSAKLARQAQSKEKTL KM
Sbjct: 310 YDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMAS 369
Query: 341 GLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVG 400
GLTE+VV DK F+ V + Q VT+ IY NLDFG+DLD+RVALVG
Sbjct: 370 GLTERVVNDKAFGIDFLAVS-IRVRWEQRCAVTWRKRVP-WIYNNLDFGIDLDTRVALVG 427
Query: 401 PNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG- 459
PNGAGKSTLLKL+TG+L+P DGM+R+H+H++I ++HQHL E+LD+D+S L+YM+K YP
Sbjct: 428 PNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEI 487
Query: 460 NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE 519
E+E+MR IGR+GLTGK QV P++NLSDGQ+ RV FAWLA++ PHML LDEPTNHLDIE
Sbjct: 488 KEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCFAWLAWQNPHMLFLDEPTNHLDIE 547
Query: 520 TIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
TID+LA+A+N+++GG++LVSHDFRLI QVA EIWVCE Q +T+W+GDI+ +K HLK+K
Sbjct: 548 TIDALADAINDFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWQGDILAYKEHLKSK 605
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9FJH6 | AB1F_ARATH | No assigned EC number | 0.8389 | 0.9312 | 0.9109 | yes | no |
| Q9UG63 | ABCF2_HUMAN | No assigned EC number | 0.6586 | 0.8917 | 0.8330 | yes | no |
| P40024 | ARB1_YEAST | No assigned EC number | 0.5276 | 0.9398 | 0.8967 | yes | no |
| Q2KJA2 | ABCF2_BOVIN | No assigned EC number | 0.6549 | 0.8917 | 0.8304 | yes | no |
| Q8T6B7 | ABCF2_DICDI | No assigned EC number | 0.5089 | 0.9158 | 0.8988 | yes | no |
| Q99LE6 | ABCF2_MOUSE | No assigned EC number | 0.6549 | 0.8917 | 0.8264 | yes | no |
| O42943 | YBP8_SCHPO | No assigned EC number | 0.4832 | 0.9725 | 0.9158 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.01630004 | ABC transporter family protein (602 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 582 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-172 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-164 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-111 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-88 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-60 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-56 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-52 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-50 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-35 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-24 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-23 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 4e-23 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-23 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-23 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-22 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-21 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-21 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-20 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-20 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-19 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-19 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-18 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-18 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-18 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-17 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-17 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-17 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-16 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-16 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-15 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-15 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-15 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-14 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-14 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-14 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-14 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-14 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-13 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-13 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-13 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-13 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-12 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-12 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-12 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-12 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-12 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-12 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-12 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 9e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-11 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-10 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-10 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-10 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-10 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-10 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-10 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 8e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-10 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-09 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-09 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 9e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-08 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-08 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-08 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-08 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 6e-08 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-07 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-07 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-07 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 6e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-07 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 9e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-06 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 5e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 6e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-06 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 8e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-06 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 5e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-05 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-05 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-05 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-04 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-04 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-04 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-04 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-04 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-04 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-04 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 7e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-04 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.001 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.001 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.001 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.001 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.001 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.001 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.001 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 0.001 | |
| COG4637 | 373 | COG4637, COG4637, Predicted ATPase [General functi | 0.001 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.002 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.002 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.003 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.003 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.003 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.003 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 0.004 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.004 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.004 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 497 bits (1282), Expect = e-172
Identities = 211/529 (39%), Positives = 313/529 (59%), Gaps = 32/529 (6%)
Query: 70 SRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEA----- 123
I +E+LS+ + L+ + L LN G R GL+G NG GKSTLL + GE+E
Sbjct: 1 MSMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 124 ------------------SDMSSLEAVISCDEERLKLEKEAEILGAQ-EDGGGEQLERVY 164
+ + L+ VI E +L E E A D E L +
Sbjct: 61 TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 165 ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224
LE LD T E RA E L GLGF + + SGGWR R+ALARAL P +LLLD
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD--EDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 225 EPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284
EPTNHLDLE+ WLE+ LK++ ++V+SH + FL+ V T+I+ + +L Y GN+ Y
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238
Query: 285 VQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTE 344
++ ++E + Y+ +Q+++A +E+I R ++K A++A+S+ K L K+E E
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASK-AKKAKSRIKRLEKLEARLAEE 297
Query: 345 KVV-KDKVLVFRFVDVGK-LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPN 402
+ V + K L FRF GK L VL+F V+ GY L+ K+L F +D R+A+VGPN
Sbjct: 298 RPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPN 357
Query: 403 GAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEE 462
GAGKSTLLKL+ G+L PL G V+ ++I F QH E LD D + L+ + + +P +E
Sbjct: 358 GAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE-LDPDKTVLEELSEGFPDGDE 416
Query: 463 EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID 522
+++RA +GRFG TG+ Q P+ LS G+++R++ A L + P++LLLDEPTNHLDIE+++
Sbjct: 417 QEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476
Query: 523 SLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571
+L EAL +++G ++LVSHD +++VA IW+ E++ V +EG D+
Sbjct: 477 ALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDK-VEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 483 bits (1246), Expect = e-164
Identities = 236/577 (40%), Positives = 352/577 (61%), Gaps = 49/577 (8%)
Query: 41 SAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRR 100
+ + A + M + ++ G P +DI +E+ S++ G DLIVD+ + L +GR
Sbjct: 150 AEMEAAKAGMPGVYVNHDGNGG----GPAIKDIHMENFSISVGGRDLIVDASVTLAFGRH 205
Query: 101 YGLLGLNGCGKSTLLTAIG------------------EIEASDMSSLEAVISCDEERLKL 142
YGL+G NG GK+T L + E+ D ++L+ V++ D ER +L
Sbjct: 206 YGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265
Query: 143 -EKEAEILGAQ---------------------EDGGGEQLERVYERLEALDASTAEKRAA 180
E+EA+++ Q +D ++LE +Y+RLE +DA TAE RAA
Sbjct: 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325
Query: 181 EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE 240
IL GL F MQ K T+ FSGGWRMRIALARALFI P +LLLDEPTNHLDL A +WLE
Sbjct: 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET 385
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYK 300
L K+ + +V+SH+++FLN V T+I+H+ ++L Y G++D + +TR E +NQ K ++
Sbjct: 386 YLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFE 445
Query: 301 WEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG 360
+ + M+ +I +F + +AK A QS+ K L +R G + VV D F F
Sbjct: 446 SNERSRSHMQAFIDKFRY-NAKRASLVQSRIKAL---DRLGHVDAVVNDPDYKFEFPTPD 501
Query: 361 KLP-PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP 419
P PP++ F + +FGY L++KNL+FG+DLDSR+A+VGPNG GKST+LKL++G+L P
Sbjct: 502 DRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP 561
Query: 420 LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ 479
G V R +R+A F QH + LD+ + L YM++ +PG E+K+RA +G FG+TG
Sbjct: 562 SSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 621
Query: 480 VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVS 539
+ PM LS GQ+SRV FA + +++PH+LLLDEP+NHLD++ +++L + L + GG+++VS
Sbjct: 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVS 681
Query: 540 HDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576
HD LI+ E+WV VT + G D+K L++
Sbjct: 682 HDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTLQS 718
|
Length = 718 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 345 bits (886), Expect = e-111
Identities = 189/500 (37%), Positives = 289/500 (57%), Gaps = 30/500 (6%)
Query: 95 LNYGRRYGLLGLNGCGKSTLLTAI-GEIEAS----------------------DMSSLEA 131
+N G++ GL+G NGCGKSTLL + EI A +LE
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEY 83
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT 191
VI D E +LE A++ A E G + ++ +L+A+DA T RAA +L+GLGF+
Sbjct: 84 VIDGDREYRQLE--AQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE 141
Query: 192 MQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVV 251
+ DFSGGWRMR+ LA+AL +LLLDEPTNHLDL+A +WLE+ LK + L++
Sbjct: 142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLIL 201
Query: 252 ISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKE 311
ISH +DFL+ + IIH++ + L YTGN+ + R+ Q Y+ +QE++A ++
Sbjct: 202 ISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQS 261
Query: 312 YIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVE 371
YI RF + K A+QAQS+ K L +ME L D F F LP P+L+ +
Sbjct: 262 YIDRFRAKATK-AKQAQSRIKMLERME---LIAPAHVDNPFHFSFRAPESLPNPLLKMEK 317
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431
V+ GY D +I ++ + SR+ L+G NGAGKSTL+KL+ G+L P+ G + ++
Sbjct: 318 VSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIK 376
Query: 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491
+ F QH E L D S LQ++ + P E+K+R +G FG G + S G++
Sbjct: 377 LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEK 436
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHE 551
+R+V A + +++P++LLLDEPTNHLD++ +L EAL +++G LV+VSHD L+ +
Sbjct: 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDD 496
Query: 552 IWVCENQAVTRWEGDIMDFK 571
+++ + V ++GD+ D++
Sbjct: 497 LYLVHDGKVEPFDGDLEDYQ 516
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 283 bits (727), Expect = 1e-88
Identities = 155/474 (32%), Positives = 266/474 (56%), Gaps = 36/474 (7%)
Query: 98 GRRYGLLGLNGCGKSTLLTAI-GEIEAS-----------------------DMSSLEAVI 133
G RYGL+G NGCGKST + + G++E S + + L+ VI
Sbjct: 27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVI 86
Query: 134 SCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA----LDASTAEKRAAEILYGLGFN 189
E ++++E + + A + E +V + LE +D TAE RA E+L G+G
Sbjct: 87 MGHTELWEVKQERDRIYALPEMSEEDGMKVAD-LEVKFAEMDGYTAEARAGELLLGVGIP 145
Query: 190 KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL 249
+ + + GW++R+ LA+ALF NP ILLLDEPTN+LD+ WLE+ L + + +
Sbjct: 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTM 205
Query: 250 VVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASM 309
++ISH + FLN VCT++ + +L+ Y GN+D+Y+ ++ E + ++ QIA +
Sbjct: 206 IIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAEL 265
Query: 310 KEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVF-RFVDVGKLPPPVLQ 368
+ +++RF ++K A+QA S+ K + K++ L E + F RF KL L+
Sbjct: 266 QSFVSRFSANASK-AKQATSRAKQIDKIK---LEEVKPSSRQNPFIRFEQDKKLHRNALE 321
Query: 369 FVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428
+T G+ + ++KNL+ ++ R+A++G NG GK+TLL+ + G+L P G V+
Sbjct: 322 VENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE 380
Query: 429 HLRIAQFHQHLAEKLDMDMSALQYMIK-EYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLS 487
+ I + Q A + D++ +M + G++E+ +R +GR + +K LS
Sbjct: 381 NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLS 440
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD 541
G++ R++F L ++P++L++DEPTNH+D+E+I+SL AL +++G L+ VSHD
Sbjct: 441 GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHD 494
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 2e-60
Identities = 167/533 (31%), Positives = 254/533 (47%), Gaps = 74/533 (13%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASD------ 125
I I ++F L+ ++EL + R L+G NG GKSTL+ + GE+ D
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Query: 126 ----MSSLE----------------AVISCDEERLKLEKEAEILGAQE--DGGGEQLERV 163
++ L+ I E LK + L + + +L ++
Sbjct: 64 QDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKL 123
Query: 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223
E+L+ + E R E+L LG + SGGW + AL RAL NP +LLL
Sbjct: 124 QEQLDHHNLWQLENRINEVLAQLGLDP---DAALSSLSGGWLRKAALGRALVSNPDVLLL 180
Query: 224 DEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
DEPTNHLD+E WLE LK F ++ ISH + F+ + T I+ + +L Y GN+DQ
Sbjct: 181 DEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ 240
Query: 284 YVQTRSE---LEENQMKQY--KWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLA--- 335
Y+ + E +EE Q ++ K QE++ +I R G K AR+ +++ + A
Sbjct: 241 YLLEKEEALRVEELQNAEFDRKLAQEEV-----WI-RQG---IK-ARRTRNEGRVRALKA 290
Query: 336 -KMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDS 394
+ ER E + K+ V GK+ V + V + + K+ V
Sbjct: 291 LRRERSERREVMGTAKMQVEEASRSGKI---VFEMENVNYQI-DGKQLVKDFSAQVQRGD 346
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA----EKLDMDMSAL 450
++AL+GPNG GK+TLLKLM G L G + L +A F QH A EK MD A
Sbjct: 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLA- 405
Query: 451 QYMIKEYPGNEE----EKMRAAIG---RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503
G +E + R +G F K + P+K LS G+R+R++ A L +
Sbjct: 406 -------EGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKP 458
Query: 504 PHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
++L+LDEPTN LD+ET++ L E L+ + G ++LVSHD + ++ E W+ E
Sbjct: 459 SNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFE 511
|
Length = 635 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 2e-56
Identities = 153/528 (28%), Positives = 247/528 (46%), Gaps = 82/528 (15%)
Query: 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCD------EERLKLEKEAEILG 150
G + G+LGLNG GKSTLL + ++ + EA + + +L+ +
Sbjct: 30 PGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGIKVGYLPQEPQLDPTKTVRE 87
Query: 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM--QAK------------- 195
E+G E ++ +R + A AE A + + QA+
Sbjct: 88 NVEEGVAE-IKDALDRFNEISAKFAEPDAD-------MDALLAEQAELQEIIDAADAWDL 139
Query: 196 ------------------KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW 237
SGG R R+AL R L P +LLLDEPTNHLD E+ W
Sbjct: 140 DRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW 199
Query: 238 LEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV---QTRSELEEN 294
LE+ L+++ +V ++H + FL+ V I+ + + + GN+ ++ + R E EE
Sbjct: 200 LEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEK 259
Query: 295 Q----MKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDK 350
+ K K E E + S S K ARQA+SK + LA+ E E +++
Sbjct: 260 EESARQKALKRELEWVRS-----------SPK-ARQAKSKAR-LARYEELLSQEFQKRNE 306
Query: 351 VLVFRFVDVG-KLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTL 409
++ G +L V++ ++ G+ D L+ +L F + V ++GPNGAGKSTL
Sbjct: 307 TAEI-YIPPGPRLGDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTL 364
Query: 410 LKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQY------MIKEYPGNEEE 463
+++TG P G ++ +++A Q + LD + + + +I+ G E
Sbjct: 365 FRMITGQEQPDSGTIKIGETVKLAYVDQS-RDALDPNKTVWEEISGGLDIIQ--LGKREV 421
Query: 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523
RA +GRF G Q + LS G+R+RV A ++LLLDEPTN LD+ET+ +
Sbjct: 422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481
Query: 524 LAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRW-EGDIMDF 570
L EAL E+ G V++SHD ++++A I E + W EG+ ++
Sbjct: 482 LEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 5e-52
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 49/192 (25%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
++ ++ Y L+ K++ ++ R+ LVG NGAGKSTLLKL+ G+L P +G+V
Sbjct: 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 427 HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNL 486
+ ++I F Q L
Sbjct: 60 GSTVKIGYFEQ------------------------------------------------L 71
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN 546
S G++ R+ A L P++LLLDEPTNHLD+E+I++L EAL E+ G ++LVSHD ++
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131
Query: 547 QVAHEIWVCENQ 558
QVA +I E+
Sbjct: 132 QVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 4e-50
Identities = 148/508 (29%), Positives = 226/508 (44%), Gaps = 101/508 (19%)
Query: 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCD------EERLKLEKEAEILG 150
G + G+LGLNG GKSTLL + ++ EA + + +L+ E +
Sbjct: 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPGIKVGYLPQEPQLDPEKTVRE 89
Query: 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM--QAK------------- 195
E+G E + +R + A+ AE A F+ Q +
Sbjct: 90 NVEEGVAEVKAAL-DRFNEIYAAYAEPDAD-------FDALAAEQGELQEIIDAADAWDL 141
Query: 196 ------------------KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW 237
K SGG R R+AL R L P +LLLDEPTNHLD E+ W
Sbjct: 142 DSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAW 201
Query: 238 LEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV---QTRSELEEN 294
LE+ L + +V ++H + FL+ V I+ + + + GN+ ++ R EE
Sbjct: 202 LEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEK 261
Query: 295 Q----MKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSK------EKTLAKMERGGLTE 344
Q K K E E + S K ARQA+SK E+ L++ +
Sbjct: 262 QEAARQKALKRELEWVRQ-----------SPK-ARQAKSKARLARYEELLSEEY-----Q 304
Query: 345 KVVKDKVLVFRFVDVGKLPPP------VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVAL 398
K + + +PP V++ ++ + D L+ +L F + V +
Sbjct: 305 KRNETNEIF--------IPPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGI 355
Query: 399 VGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA---QFHQHLAEKLDM--DMSALQYM 453
+GPNGAGKSTL K++TG P G ++ +++A Q L + ++S +
Sbjct: 356 IGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 415
Query: 454 IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513
IK GN E RA +GRF G Q + LS G+R+R+ A + ++LLLDEPT
Sbjct: 416 IK--VGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473
Query: 514 NHLDIETIDSLAEALNEWDGGLVLVSHD 541
N LD+ET+ +L EAL E+ G V++SHD
Sbjct: 474 NDLDVETLRALEEALLEFPGCAVVISHD 501
|
Length = 556 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 37/74 (50%), Positives = 54/74 (72%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFL 259
SGG +MR+ALA+ L NP +LLLDEPTNHLDLE+ LEE LK++ ++++SH + FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 260 NGVCTNIIHMQNKQ 273
+ V T II +++ +
Sbjct: 131 DQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 27/297 (9%)
Query: 3 SDASKKKALQKKAAAAAKRGGKAAAAAASSKAAALQNGSAADKAASEMAAMQISDRTCTG 62
+ K++ K +RG AA+ A +K+ +K + +A + +
Sbjct: 251 AAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRI----KRLEKLEARLAEERPVEEGKPL 306
Query: 63 VL----CSHPLSRD-IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLT 116
L + + E++S + G L++ ++ G R ++G NG GKSTLL
Sbjct: 307 AFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLK 366
Query: 117 AI-GEIEASDMSSLEAVISCDEERLKLEKEAEILG--AQEDGGGEQLERVYERLEALDAS 173
+ GE+ +K+ + +I G Q + + V E L
Sbjct: 367 LLAGELGP------------LSGTVKVGETVKI-GYFDQHRDELDPDKTVLEELSEGFPD 413
Query: 174 TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE 233
E+ L GF Q K SGG + R+ LA+ L P +LLLDEPTNHLD+E
Sbjct: 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473
Query: 234 ACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSE 290
+ LEE L F+ ++++SH + FL+ V T I + +++ + G ++ Y++ + E
Sbjct: 474 SLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLV-EDKVEEFEGGYEDYLEQKKE 529
|
Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 7e-33
Identities = 116/542 (21%), Positives = 199/542 (36%), Gaps = 105/542 (19%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
+ +E+L+V F V D E+ G G++G +G GKSTL A+ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 129 LE-AVISCDEERLKLEKEA--EILGA------QEDGG--------GEQLERVYERLEALD 171
VI + L L + ++ G Q+ G+Q+
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 172 ASTAEKRAAEILYGLGF-NKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
+ A KRA E+L +G + + + SGG R R+ +A AL + P +L+ DEPT L
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 231 D-------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
D L+ L++ ++ ++ I+H + + ++ M G +
Sbjct: 186 DVTTQAQILDL---LKDLQRELGMAVLFITHDLGVVAELADRVVVMYK-------GEIVE 235
Query: 284 YVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLT 343
T E+ N Y + +A ++
Sbjct: 236 TGPTE-EILSNPQHPYT---------RGLLAAVPR--------LGDEKIIRLPRRGPLRA 277
Query: 344 EKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSR----VALV 399
E ++ + L R+ L V K +D V D R + LV
Sbjct: 278 EPLLSVRNLSKRYGSRKGLFVRERGEV-------------KAVD-DVSFDLREGETLGLV 323
Query: 400 GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDM------SAL--- 450
G +G+GKSTL +++ G L P G + + + + M S+L
Sbjct: 324 GESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383
Query: 451 ---QYMIKE----YPGNEEEKMRAAIG----RFGLTGKAQVMPMK--NLSDGQRSRVVFA 497
++ E + G + RA + GL + + LS GQR RV A
Sbjct: 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGL--PPEFLDRYPHELSGGQRQRVAIA 441
Query: 498 -WLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEI 552
LA +P +L+LDEP + LD + ++ L + E + +SHD ++ +A +
Sbjct: 442 RALA-LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV 500
Query: 553 WV 554
V
Sbjct: 501 AV 502
|
Length = 539 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 28/209 (13%)
Query: 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
P+++ +T Y ++ +++ V+ AL+GPNGAGKSTLLK + G L P G
Sbjct: 2 MPMIEVENLTVSYGNRPVL-EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 424 VR--------RHNHLRIAQFHQHLAEKLDMDMSALQYM----------IKEYPGNEEEKM 465
++ R LRI Q + ++ + + ++EK+
Sbjct: 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLDIETIDSL 524
A+ R G+ + LS GQ+ RV+ A LA + P +LLLDEP +D+ +
Sbjct: 121 DEALERVGMEDLRDR-QIGELSGGQKQRVLLARALA-QNPDLLLLDEPFTGVDVAGQKEI 178
Query: 525 AEALNEW--DGGLVL-VSHDFRLINQVAH 550
+ L E +G VL V+HD + V
Sbjct: 179 YDLLKELRQEGKTVLMVTHD---LGLVMA 204
|
Length = 254 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
+L+ ++FGY I +L F + ++GPNG+GKSTLLK + G L P G V
Sbjct: 1 MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 425 ----RRHNHLRIAQFHQHLA-----EKLDMDMSALQYMI---KEYPG-------NEEEKM 465
+ L + + LA ++ + ++ + G +EE +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI------- 518
A+ GL A P+ LS G+R RV+ A ++ +LLLDEPT+HLDI
Sbjct: 120 EEALELLGLEHLAD-RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVL 178
Query: 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
E + L E +V+V HD L + A + + ++ +
Sbjct: 179 ELLRDLNR---EKGLTVVMVLHDLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 24/198 (12%)
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR------ 425
+T Y + + +++ F V +A+VGPNGAGKSTLLK + G L P G +R
Sbjct: 5 LTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL 63
Query: 426 RHNHLRIAQFHQHLAEKLDMDMSALQY----------MIKEYPGNEEEKMRAAIGRFGLT 475
RI Q + D +S + + ++ K+ A+ R GL+
Sbjct: 64 EKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS 123
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DG 533
A + LS GQ+ RV+ A + P +LLLDEP +D +T + + E L E +G
Sbjct: 124 ELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 534 -GLVLVSHDFRLINQVAH 550
+++V+HD + V
Sbjct: 183 MTILVVTHD---LGLVLE 197
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 5e-25
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 33/191 (17%)
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431
++ GY + +L ++ V ++GPNGAGKSTLLK + G L P G +
Sbjct: 5 LSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI------- 56
Query: 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA----AIGRFGLTGKAQVMPMKNLS 487
L K + E + A A+ GL A P LS
Sbjct: 57 ------LLDGKD----------LASLSPKELARKIAYVPQALELLGLAHLAD-RPFNELS 99
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLVLVSHDFR 543
G+R RV+ A ++P +LLLDEPT+HLDI E ++ L E +V+V HD
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159
Query: 544 LINQVAHEIWV 554
L + A + +
Sbjct: 160 LAARYADRVIL 170
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
+++ ++F Y K++ ++ RV L+GPNG+GKSTLLKL+ G L P G V
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 425 R-RHNHLRIAQFHQHLAEK-----LDMDMSALQYMIKEY----PGNE---EEKMRA---- 467
+ L +K + D +++ N E++
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
A+ GL P NLS GQ+ RV A + P +LLLDEPT LD + L E
Sbjct: 122 ALELVGLEELLDRPP-FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180
Query: 528 LNEW--DGG--LVLVSHDFRLINQVAHEIWV 554
L + +GG +++V+HD L+ + A + V
Sbjct: 181 LKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-24
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 49/201 (24%)
Query: 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI 133
IE+LS + G + + L L G L+G NG GKSTLL AI
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIA-------------- 46
Query: 134 SCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQ 193
G + GE + A+ E+ +G+ Q
Sbjct: 47 ----------------GLLKPTSGE--------ILIDGKDIAKLPLEELRRRIGY--VPQ 80
Query: 194 AKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILV 250
SGG R R+ALARAL +NP +LLLDEPT+ LD + L E L++ R ++
Sbjct: 81 ------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134
Query: 251 VISHSQDFLNGVCTNIIHMQN 271
+++H + +I +++
Sbjct: 135 IVTHDPELAELAADRVIVLKD 155
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 21/220 (9%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLE 130
I + +L+ + G +D E+ G +GLLG NG GK+TLL + G ++ +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE--- 61
Query: 131 AVISCDEERLKLEKEA-EILGA--QEDG------GGEQLERVYERLEALDASTAEKRAAE 181
++ + +K + +G QE E LE + RL L AE+R E
Sbjct: 62 -ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE-FFARLYGLSKEEAEERIEE 119
Query: 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET 241
+L G KK R SGG + R+++A AL +P +L+LDEPT+ LD E+ + E
Sbjct: 120 LLELFGLEDKAN-KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 242 LKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277
L++ +++ +H + +C +I + + ++
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218
|
Length = 293 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-23
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 267 IHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQ 326
+ ++N +L Y GN+ QY++ + E E Q K Y+ +Q++I ++E+I RF ++K A+Q
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASK-AKQ 59
Query: 327 AQSKEKTLAKMERGGLTEKVVKDKVLVFRF 356
AQS+ K L KMER EK V+ K RF
Sbjct: 60 AQSRIKALEKMER---IEKPVEKKP-KIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 5e-23
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 25/212 (11%)
Query: 368 QFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-- 424
+ ++F Y ++ + V +VGPNG+GKSTLL+L+ G L P G V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 425 --RRHNHLRIAQF------------HQHLAEKLDMDM--SALQYMIKEYPGNEEEKMRAA 468
+ L + + Q ++ ++ + E EE++ A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEE--EIEERVEEA 118
Query: 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
+ GL G P LS GQ+ RV A + P +LLLDEPT LD L E L
Sbjct: 119 LELVGLEGLRDRSP-FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 529 NEW-DGG--LVLVSHDFRLINQVAHEIWVCEN 557
+ G +++V+HD L+ ++A + V E+
Sbjct: 178 KKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-23
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 48/225 (21%)
Query: 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
++F V+F Y PD + ++L + +VA+VG +G+GKSTLLKL+ G P G +
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 426 ---------RHNHLR-----IAQ----FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA 467
LR + Q F + E + + EE + A
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATD---------EEIIEA 582
Query: 468 AIGRFGLTGKAQV---MPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
A L G + +PM NLS GQR R+ A +P +LLLDE T+
Sbjct: 583 AQ----LAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS 638
Query: 515 HLDIETIDSLAEALNEWDGG--LVLVSHDFRLINQVAHEIWVCEN 557
LD ET + + L + G +++++H I A I V +
Sbjct: 639 ALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVLDQ 682
|
Length = 709 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 2e-22
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 50/205 (24%)
Query: 367 LQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
++F V+F Y + K++ + +VA+VGP+G+GKSTLLKL+ P G +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 426 RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP--- 482
+++ E +R I +P
Sbjct: 61 IDGVD-----------------------LRDLD---LESLRKNIA---------YVPQDP 85
Query: 483 -------MKN-LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG 534
+N LS GQR R+ A R P +L+LDE T+ LD ET + EAL G
Sbjct: 86 FLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG 145
Query: 535 --LVLVSHDFRLINQVAHEIWVCEN 557
+++++H I A I V ++
Sbjct: 146 KTVIVIAHRLSTIRD-ADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.2 bits (233), Expect = 4e-22
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 45/210 (21%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
I + +LS + + D L + G YGLLG NG GK+TL+ I G ++
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-----SG 55
Query: 132 VISCDEERLKLEKEA--EILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
I + +K E E +G +E +YE L E L
Sbjct: 56 EIKVLGKDIKKEPEEVKRRIGYLPEEP-------SLYENL----------TVRENL---- 94
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-- 245
SGG + R+ALA+AL +P +L+LDEPT+ LD E+ E L++
Sbjct: 95 -----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 246 -DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ +++ SH + +C + + N ++
Sbjct: 144 EGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 7e-22
Identities = 55/191 (28%), Positives = 76/191 (39%), Gaps = 43/191 (22%)
Query: 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427
+ ++F Y N+ + VALVGPNG+GKSTLL+ + G L P G +
Sbjct: 1 EIENLSFRY-GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 428 NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG-RFGLTGKAQVMPMKNL 486
IA+ R IG L+G
Sbjct: 60 GK-DIAKLPLEEL-------------------------RRRIGYVPQLSG---------- 83
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-DGG--LVLVSHDFR 543
GQR RV A P +LLLDEPT+ LD + + L E L E + G +++V+HD
Sbjct: 84 --GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141
Query: 544 LINQVAHEIWV 554
L A + V
Sbjct: 142 LAELAADRVIV 152
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-21
Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 19/272 (6%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
+++E +S + G +I+DS +L L G R GLLG NG GKSTL+ + A +++ +
Sbjct: 313 LKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLL----AGELAPVSG 367
Query: 132 VISCDEERLKL----EKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
I + +KL + + E L A E + L L E++ + L G G
Sbjct: 368 EIGL-AKGIKLGYFAQHQLEFLRADESP--------LQHLARLAPQELEQKLRDYLGGFG 418
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR 247
F ++TR FSGG + R+ LA ++ P +LLLDEPTNHLDL+ L E L F+
Sbjct: 419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG 478
Query: 248 ILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIA 307
LVV+SH + L ++ + + +++ + G+ + Y Q S++++ + + + +E A
Sbjct: 479 ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNA 538
Query: 308 SMKEYIARFGHGSAKLARQAQSKEKTLAKMER 339
+ + A+L Q Q K +A++E+
Sbjct: 539 NSAQARKDQKRREAELRTQTQPLRKEIARLEK 570
|
Length = 638 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-21
Identities = 71/227 (31%), Positives = 96/227 (42%), Gaps = 41/227 (18%)
Query: 358 DVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417
V P P L+F V+ Y + + F V RVALVGP+GAGKSTLL L+ G +
Sbjct: 313 PVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372
Query: 418 VPLDGMVR-----------RHNHLRIAQFHQH-------LAEKLDMDMSALQYMIKEYPG 459
P +G + +IA QH +AE + + P
Sbjct: 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR----------PD 422
Query: 460 NEEEKMRAAIGRFGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLL 509
+ ++R A+ R GL +P LS GQ R+ A R +LLL
Sbjct: 423 ASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482
Query: 510 DEPTNHLDIETIDSLAEALNEWDGG--LVLVSHDFRLINQVAHEIWV 554
DEPT HLD ET + EAL G ++LV+H L +A I V
Sbjct: 483 DEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALA-ALADRIVV 528
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 4e-21
Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 374 FGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD-GMVRRHNHLRI 432
F P + N + ++ + RV LVG NGAGKSTL+K++ G+ V LD G + L +
Sbjct: 13 FSDAP---LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE-VLLDDGRIIYEQDLIV 68
Query: 433 AQFHQ-------------------HLAEKLD-------------MD-----MSALQYMIK 455
A+ Q AE L + ++ LQ +
Sbjct: 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD 128
Query: 456 EYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ + E ++ + + GL A + +LS G + P +LLLDEPTN
Sbjct: 129 HHNLWQLENRINEVLAQLGLDPDA---ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTN 185
Query: 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574
HLDIETI+ L L + G ++ +SHD I +A I + + + G ++ +L
Sbjct: 186 HLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG---NYDQYL 242
Query: 575 KAKA 578
K
Sbjct: 243 LEKE 246
|
Length = 635 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 30/206 (14%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
P+++ V+ I +L + V+ A+VGPNGAGK+TLL L+TG+ P G
Sbjct: 28 NEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 423 MV----------------RRHNHLRIAQFHQHLAEK---LDMDMSALQYMIKEYPGNEEE 463
V R+ L ++ H+ + D+ +S I Y +
Sbjct: 87 DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA 146
Query: 464 KMRAAIG----RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE 519
+ AA G A P +LS G++ RV+ A + P +L+LDEP LD+
Sbjct: 147 EDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 520 TIDSLAEALNEWDGG-----LVLVSH 540
+ L L E L+ V+H
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+++F V+ Y +++ F + V L GP+GAGKSTLLKL+ G+ P G +
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 426 RHNH------------LR-----IAQFHQHLAEKLDMDMSALQYMIKEYPGNE-EEKMRA 467
+ H LR + Q + L ++ + AL + P E ++
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSL 524
+ GL KA+ +P + LS G++ RV A QP +LL DEPT +LD + I L
Sbjct: 121 VLDLVGLKHKARALPSQ-LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL 179
Query: 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEG 565
E +N +++ +HD L+N++ H + E+ + R E
Sbjct: 180 FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
V++ +T Y D + F V+ L+GPNGAGK+TLLK++ G L P G +
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 425 R---RHNHLRIAQFHQHLA-----EKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIG 470
A+ + + L +++ + + + E EE++ +
Sbjct: 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY-RQPHMLLLDEPTNHLDIETIDSLAEAL- 528
FGL KA ++ LS G + R+ A LA P +L+LDEPT+ LD E+ + E L
Sbjct: 123 LFGLEDKANK-KVRTLSGGMKQRLSIA-LALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 529 ---NEWDGGLVLVSHDFRLINQVAHEIWV 554
E ++L +H ++ + +
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVII 209
|
Length = 293 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 2e-20
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 29/220 (13%)
Query: 74 RIESLSVTFHGHD--LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
+++LS ++ + D L + G ++G NG GKSTLL + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP----TSG 56
Query: 132 VISCDEERLKLEKEAEILGA-----Q--EDGGGEQL--ERVYE------RLEALDASTAE 176
+ D + L E+ Q +D Q V E L E
Sbjct: 57 EVLVDGKDLTKLSLKELRRKVGLVFQNPDD----QFFGPTVEEEVAFGLENLGLPEEEIE 112
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
+R E L +G ++ + SGG + R+A+A L ++P ILLLDEPT LD
Sbjct: 113 ERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 237 WLEETLKKFDR---ILVVISHSQDFLNGVCTNIIHMQNKQ 273
L E LKK +++++H D L + +I +++ +
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-20
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 17/212 (8%)
Query: 74 RIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
RIE++S ++ I+D L+L G L G NG GK+TL + + S
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS---- 56
Query: 133 ISCDEERLKLEKEAEILG--AQEDGGGEQL--ERVYE--RLEALDASTAEKRAAEILYGL 186
I + + +K ++ + +G Q+ QL + V E L + ++A +L L
Sbjct: 57 ILLNGKPIKAKERRKSIGYVMQDVD--YQLFTDSVREELLLGLKELDAGNEQAETVLKDL 114
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLK 243
++ + SGG + R+A+A AL +L+ DEPT+ LD + + E L
Sbjct: 115 DLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 244 KFDRILVVISHSQDFLNGVCTNIIHMQNKQLK 275
+ ++VI+H +FL VC ++ + N +
Sbjct: 174 AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 3e-20
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 22/208 (10%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+++F V+ Y ++ + + L GP+GAGK+TLLKL+ G L P G VR
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 426 -------RHNHLRIAQFHQHLA-----EKLDMDMS-----ALQYMIKEYPGNE-EEKMRA 467
R ++ + + +L D + AL ++ E + ++ A
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSL 524
A+ + GL KA P + LS G++ RV A P +LL DEPT +LD + I L
Sbjct: 121 ALRQVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 525 AEALNEWDGGLVLVSHDFRLINQVAHEI 552
+ LN+ +++ +HD L+++VAH +
Sbjct: 180 LKRLNKRGTTVIVATHDLSLVDRVAHRV 207
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-20
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
++F+ VT Y ++ + V LVGP+GAGKSTLLKL+ + +P G +R
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 427 H----NHLR---IAQFHQHLA-----EKLDMDMS-----ALQYMIKEYPGNE-EEKMRAA 468
+ + LR I + + +L D + A + P E +++ AA
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAA 120
Query: 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
+ GL+ K + +P + LS G++ RV A P +L+ DEPT +LD +T + L
Sbjct: 121 LELVGLSHKHRALPAE-LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179
Query: 529 NEWD--GGLVLVS-HDFRLINQVAHEIWVCEN 557
+ + G V+V+ H L++ H + E
Sbjct: 180 KKINKAGTTVVVATHAKELVDTTRHRVIALER 211
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 17/235 (7%)
Query: 73 IRIESLSVTFHGHDLIV-DSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLE 130
I E+LS + G + D LE+ G R L+G NG GKSTLL + G ++ + L
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 131 AVISCDEERLKLEKEAEILGAQEDGGGEQL--ERVYE------RLEALDASTAEKRAAEI 182
+ E+ LE ++ ++ +QL V + L E+R AE
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPD-DQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL 242
L +G + + + + SGG + R+A+A L + P ILLLDEPT LD + L E L
Sbjct: 123 LELVGLEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 243 KKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEE 293
KK + +++++H + + ++ + + ++ G+ + L
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFNDAELLLA 235
|
Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 4e-20
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 37/191 (19%)
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431
++ Y ++ V+ L+GPNGAGK+TL+K++ G L P G ++
Sbjct: 6 LSKRY-GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK-- 62
Query: 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG----RFGLTGKAQVMPMKNLS 487
E E+++ IG L V LS
Sbjct: 63 -------------------------DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLS 97
Query: 488 DGQRSRVVFAWLAY-RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLV-SHDFR 543
G + R+ A A P +L+LDEPT+ LD E+ E L E +G +L+ SH
Sbjct: 98 GGMKQRLALA-QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 544 LINQVAHEIWV 554
++ + +
Sbjct: 157 EAERLCDRVAI 167
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-20
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 26/191 (13%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RHNHLR--I 432
+++ F + V +G NGAGKST LK++TG L+P G VR R +LR
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100
Query: 433 AQFHQHLAEKLDM----DMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLS 487
Q L D+ + L+ +I E P +E E++ L G + P++ LS
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLK-LIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLS 158
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWD----GGLVLVSHDF- 542
GQR R A P +L LDEPT LD+ ++ E L E++ ++L +H F
Sbjct: 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218
Query: 543 ---RLINQVAH 550
L ++V
Sbjct: 219 DIATLCDRVLL 229
|
Length = 325 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 6e-20
Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 43/206 (20%)
Query: 367 LQFVEVTFGYTPDNLIY--KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP----- 419
++F V+F Y P N+ + +VA++G G+GKSTLLKL+ G P
Sbjct: 464 IEFRNVSFAY-PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 420 -LDGM--------VRRHNHLRIAQ----FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466
LDG+ R N + Q F+ L + + + P ++E++
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA----------PYADDEEIL 572
Query: 467 AAIGRFGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
A G+T + P ++LS GQR V A R P +LLLDEPT+ +
Sbjct: 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632
Query: 517 DIETIDSLAEALNEWDGG--LVLVSH 540
D + + + L W G LVLV+H
Sbjct: 633 DNRSEERFKDRLKRWLAGKTLVLVTH 658
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 8e-20
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 35/205 (17%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ ++++S + ++ D L + G LLG +G GKSTLL I +E D S
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS---- 56
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGE--QLERVYERLEALDASTAEKRAAEILYGLGFNK 190
I D E L + L G Q ++ L L+ I GL
Sbjct: 57 ILIDGE--DLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE---------NIALGL---- 101
Query: 191 TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK-FDRI- 248
SGG + R+ALARAL ++P +LLLDEPT+ LD + LK ++
Sbjct: 102 ----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 249 --LVVISHSQDFLNGVCTNIIHMQN 271
+V+++H D + ++ +++
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRD 176
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 64/206 (31%), Positives = 89/206 (43%), Gaps = 39/206 (18%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR------------RHNHLR 431
++ V V L+GPNGAGK+TL L+TG P G V R L
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 432 IAQFHQHLAEKLDMDMSALQYMI---------------KEYPGNEE---EKMRAAIGRFG 473
IA+ Q +L ++ L+ + E E+ R + G
Sbjct: 81 IARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW- 531
L A P NLS GQ+ R+ A LA QP +LLLDEP L+ E + LAE + E
Sbjct: 139 LGELAD-RPAGNLSYGQQRRLEIARALA-TQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 532 -DGGL--VLVSHDFRLINQVAHEIWV 554
GG+ +L+ HD +L+ +A I V
Sbjct: 197 DRGGVTILLIEHDMKLVMGLADRIVV 222
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 33/226 (14%)
Query: 73 IRIESLSVTFHGH---DLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
+ + +LS+ + G +++ LE+ G G++G +G GKSTL + +E S
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGGGEQL----------------ERVYERLEALDA 172
I D + L A A+ Q+ + E L
Sbjct: 64 ----ILLDGKPL-----APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL 114
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD- 231
S +++R AE+L +G + ++ + SGG R RIA+ARAL P +L+LDEPT+ LD
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 232 -LEACVW--LEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++A + L E K+ + ISH + +C I M N Q+
Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 3e-19
Identities = 125/569 (21%), Positives = 214/569 (37%), Gaps = 168/569 (29%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTL---LTAIGEIEASDMSSL 129
I +++L+ F G +++ + + G G+LG +G GKS L L + + E + +
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 130 EAVISCDE------------------ERLKLEKEAEILGAQED----------------- 154
V C++ L+ E E + +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPE-EVDFWNLSDKLRRRIRKRIAIMLQRTF 119
Query: 155 ---GGGEQLERVYERLEAL--DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209
G L+ V E LE + + A RA +++ + + + RD SGG + R+
Sbjct: 120 ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI-THIARDLSGGEKQRVV 178
Query: 210 LARALFINPTILLLDEPTNHLDLEACVW----LEETLKKFDRILVVISHSQDFLNGVCTN 265
LAR L P + L DEPT LD + LEE +K +V+ SH + + +
Sbjct: 179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238
Query: 266 IIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLAR 325
I ++N ++K + + E +A F
Sbjct: 239 AIWLENGEIK-----------------------------EEGTPDEVVAVF--------- 260
Query: 326 QAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGY-TPDNLIYK 384
ME EK V+VG+ P+++ V+ Y + D + K
Sbjct: 261 -----------MEGVSEVEK--------ECEVEVGE---PIIKVRNVSKRYISVDRGVVK 298
Query: 385 NLDFGVDLDSRVA----LVGPNGAGKSTLLKLMTGDLVPLDG------------MVRRHN 428
+D V L+ + +VG +GAGK+TL K++ G L P G M +
Sbjct: 299 AVD-NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357
Query: 429 HLR------IAQFHQ------------HLAEKLDMD-------MSALQYMIKEYPGNEEE 463
R I HQ +L E + ++ M A+ +K G +EE
Sbjct: 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAV-ITLKMV-GFDEE 415
Query: 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----IE 519
K + + P LS+G+R RV A + ++P +++LDEPT +D ++
Sbjct: 416 KAEEILDK---------YP-DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVD 465
Query: 520 TIDSLAEALNEWDGGLVLVSHDFRLINQV 548
S+ +A E + ++VSHD + V
Sbjct: 466 VTHSILKAREEMEQTFIIVSHDMDFVLDV 494
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 6e-19
Identities = 55/202 (27%), Positives = 82/202 (40%), Gaps = 34/202 (16%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDG------MVRRHNHLR 431
++ F V L+GPNGAGK+TL L++G L P DG L
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
Query: 432 IAQFHQHLAEKLDMDMSALQ------------YMIKEYPGNEEEKMRA----AIGRFGLT 475
I + Q +L +++ L+ ++ EE + R + R GL
Sbjct: 77 IGRTFQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT---NHLDIETIDSLAEALNEWD 532
A P LS GQ+ R+ A P +LLLDEP N + E + L L E
Sbjct: 135 DLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 533 GGLVLVSHDFRLINQVAHEIWV 554
++LV HD ++ +A + V
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTV 215
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 41/213 (19%)
Query: 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
++F V+F Y N+ + +VA++G G+GKSTLLKL+ G P G V
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 426 --------------RHNHLRIAQ----FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA 467
R N + Q F+ L + + + ++E +RA
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP---------LADDERILRA 113
Query: 468 AIGRFGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
A G+T P + LS GQR V A P +LLLDEPT+ +D
Sbjct: 114 A-ELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172
Query: 518 IETIDSLAEALNEWDGG--LVLVSHDFRLINQV 548
+ + + L E L + G L++++H L++ V
Sbjct: 173 MNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-18
Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L+ V V+FG + ++ + + L+GPNGAGKSTL++++ G + P +G+++R
Sbjct: 7 LENVSVSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR 63
Query: 427 HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNL 486
+ LRI Q L + ++ +++ + PG ++E + A+ R G PM+ L
Sbjct: 64 NGKLRIGYVPQKLYLDTTLPLTVNRFL-RLRPGTKKEDILPALKRVQ-AGHLIDAPMQKL 121
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI-------ETIDSLAEALNEWDGGLVLVS 539
S G+ RV+ A +P +L+LDEPT +D+ + ID L E D +++VS
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR---RELDCAVLMVS 178
Query: 540 HDFRLINQVAHEIWVCENQ 558
HD L+ E+ +C N
Sbjct: 179 HDLHLVMAKTDEV-LCLNH 196
|
Length = 251 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-18
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---RHNHLRIAQF 435
+ ++ +L F ++ + + GPNGAGK+TLL+++ G L P G V +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 436 HQHLA-----EKLDMDMSA---LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLS 487
HQ L + +++A L + + + + A+ + GL G + P+ LS
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQLS 132
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHD 541
GQ+ RV A L + +LDEP LD E + L + G ++L +H
Sbjct: 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 5e-18
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 45/211 (21%)
Query: 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAV 132
+E+LSV + G ++ D L + G G+LG NG GKSTLL + G ++ S
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-----SGE 55
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA--AEILYGLGFNK 190
I D + L E+ A K A + L LG
Sbjct: 56 ILLDGKDLASLSPKEL--------------------------ARKIAYVPQALELLG--- 86
Query: 191 TMQAKKTRDF---SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-- 245
+ R F SGG R R+ LARAL P ILLLDEPT+HLD+ + L E L++
Sbjct: 87 -LAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 246 --DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ +V++ H + +I +++ ++
Sbjct: 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 7e-18
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+++E+L+ + + L L G YGLLG NG GK+TL+ + + ++
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRI- 58
Query: 133 ISCDEERLKLEKEA-EILG--AQEDGGGEQLERVYE------RLEALDASTAEKRAAEIL 183
++ LK ++ +G QE G V E L+ + + + R E+L
Sbjct: 59 --DGQDVLKQPQKLRRRIGYLPQEFGVYPNF-TVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 184 YGLGFNKTMQAKKTR--DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET 241
+ K + SGG R R+ +A+AL +P+IL++DEPT LD E +
Sbjct: 116 ELVNLG---DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172
Query: 242 LKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276
L + DRI+++ +H + + +C + + +L F
Sbjct: 173 LSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 9e-18
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 17/218 (7%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE-- 130
I E+LS F LI D +L G G++G NG GKSTL I E D +++
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382
Query: 131 ---AVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
+ D+ R L D E + L+ + E + +
Sbjct: 383 ETVKLAYVDQSRDAL-----------DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN 431
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR 247
F + Q KK SGG R R+ LA+ L +LLLDEPTN LD+E LEE L +F
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 248 ILVVISHSQDFLNGVCTNIIHMQ-NKQLKFYTGNFDQY 284
VVISH + FL+ + T+I+ + + ++++ GN+ +Y
Sbjct: 492 CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQF 435
P I K++ +++ ++G NGAGKSTLL++M G +G R +++
Sbjct: 14 VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYL 73
Query: 436 HQ--HLAEKLD------MDMSALQYMIKEYP------GNEEEKMRA-------------A 468
Q L ++ ++ + + + M A A
Sbjct: 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDA 133
Query: 469 IGRFGLTGKAQV-----------MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+ L K ++ + LS G+R RV L +P MLLLDEPTNHLD
Sbjct: 134 ADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
Query: 518 IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
E++ L + L E+ G +V V+HD ++ VA W+ E
Sbjct: 194 AESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAG--WILE 230
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 33/235 (14%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
P P+++ VT + D +I +D V +A++G +G+GKSTLL+L+ G L P G
Sbjct: 5 PEPLIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63
Query: 423 MVRRHNHLRIAQFHQHLAEKLDMDM------SAL----------QYMIKEYPGNEEEKMR 466
+ I Q + ++ M AL + ++E+ E +R
Sbjct: 64 EILIDGE-DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122
Query: 467 A----AIGRFGLTG-KAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLD--- 517
+ GL G A + P LS G R RV A +A P +L LDEPT+ LD
Sbjct: 123 ELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIALD-PELLFLDEPTSGLDPIS 180
Query: 518 IETIDSLAEALNEWDGGL--VLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570
ID L LN+ GL ++V+HD + +A + V + V EG +
Sbjct: 181 AGVIDELIRELND-ALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEEL 233
|
Length = 263 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-17
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 27/182 (14%)
Query: 389 GVDLD----SRVALVGPNGAGKSTLLKLMTGDLVP-----------LDGMVRRHNHLRIA 433
GVD+ S L+GPNG+GKSTLL+L+ G L P L G+ RR R+A
Sbjct: 19 GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78
Query: 434 QFHQHLAEKLDM---DMSAL-----QYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
Q + + D+ AL + + ++ + A+ R L+ A M
Sbjct: 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMST 137
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE--WDGGLVLVS-HDF 542
LS G+R RV A ++P +LLLDEPTNHLD+ + E G V+ + HD
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL 197
Query: 543 RL 544
L
Sbjct: 198 NL 199
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-17
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 22/218 (10%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
PP + ++F Y +L+ + ALVG +GAGKSTLL L+ G L P G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 423 MVRRHNH----LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGNEEEKMRAAIGRFG 473
+R + L + + ++ + + I+E P +E++ AA+ + G
Sbjct: 377 EIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAG 435
Query: 474 LTGKAQV-----MPM----KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524
L + LS GQ R+ A +LLLDEPT HLD ET +
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 525 AEALNEWDGG--LVLVSHDFRLINQVAHEIWVCENQAV 560
+AL E +++++H A I V +N +
Sbjct: 496 LQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL 532
|
Length = 559 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 59/194 (30%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----LRIAQFHQHLA 440
GV LD R +A++GPNGAGKSTLLK ++G+L P G V + + +H A
Sbjct: 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78
Query: 441 ------------EKLDM-DMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLS 487
++ M + + P +E A+ L+G A + LS
Sbjct: 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-RDYRTLS 137
Query: 488 DGQRSRVVFA------WLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLV 538
G++ RV A W L LDEPT+ LDI LA L G ++ V
Sbjct: 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197
Query: 539 SHDFRLINQVAHEI 552
HD L Q A I
Sbjct: 198 LHDLNLAAQYADRI 211
|
Length = 259 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-17
Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 48/196 (24%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA-----QF-------------- 435
R L+G NG GKST +K++ GDL P G V + R+ QF
Sbjct: 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMG 88
Query: 436 HQHLAE-KLDMD-MSALQYMIKEYPGNEEEKMRAAI--GRF----GLTGKAQV------- 480
H L E K + D + AL M +EE+ M+ A +F G T +A+
Sbjct: 89 HTELWEVKQERDRIYALPEM------SEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV 142
Query: 481 --------MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWD 532
M ++ G + RV+ A + P +LLLDEPTN+LDI TI L + LNE +
Sbjct: 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERN 202
Query: 533 GGLVLVSHDFRLINQV 548
++++SHD +N V
Sbjct: 203 STMIIISHDRHFLNSV 218
|
Length = 530 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-17
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 22/194 (11%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
++ L+ T+ ++ D L + G YG LG NG GK+T + I + D
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD----SGE 56
Query: 133 ISCD-EERLKLEKEAEILGAQEDGGG--------EQLERVYERLEALDASTAEKRAAEIL 183
I+ D + K + +GA + G E L R+ RL + +KR E+L
Sbjct: 57 ITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL-RLLARLLGIR----KKRIDEVL 111
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET-- 241
+G K KK + FS G + R+ +A AL NP +L+LDEPTN LD + L E
Sbjct: 112 DVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170
Query: 242 -LKKFDRILVVISH 254
L+ +++ SH
Sbjct: 171 SLRDQGITVLISSH 184
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 22/221 (9%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLL-TAIGEIEASDMSSLEAVI 133
+E+L+ F L + L L G R ++G NG GK+TLL T +GE+E
Sbjct: 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP---------- 371
Query: 134 SCDEERLKLEKEAEILG--AQEDGGGEQLERVYERLEALDASTAEKRAAEILYG-LG--- 187
D +K + A I G AQ+ E + + E + + G LG
Sbjct: 372 --DSGTVKWSENANI-GYYAQDHA--YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLL 426
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR 247
F++ K + SGG + R+ + + P +L++DEPTNH+D+E+ L L+K++
Sbjct: 427 FSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEG 486
Query: 248 ILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTR 288
L+ +SH ++F++ + T II + + ++G +++Y++++
Sbjct: 487 TLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527
|
Length = 530 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 5e-17
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 31/228 (13%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
+ +++LSV+F V D + G GL+G +G GKSTL AI + S
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 129 LEAVISCDEERLKL-EKEAEILGA------QEDGG--------GEQLERVYERLEALDAS 173
+I ++ LKL + +I Q+ GEQ+ L
Sbjct: 62 ---IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 174 TAEKRAA-EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD- 231
A K A +L G+G + + + + SGG R R+A+ARAL +NP +L+ DEPT+ LD
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 232 -LEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++A + + LKK L+ I+H + + + M ++
Sbjct: 179 SVQAQI--LDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 6e-17
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 42/195 (21%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------------- 425
K + ++ VA+VGP+G+GKSTLL ++ G P G VR
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 426 -RHNHLR-IAQFHQHLAEKLDMDMSALQ-----YMIKEYPGNE-EEKMRAAIGRFGLTGK 477
R H+ + Q L D++AL+ ++ P E E+ + R GL +
Sbjct: 79 FRRRHIGFVFQSFNLLP-----DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR 133
Query: 478 AQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNHLDIET---IDSLAEALNE 530
P + LS GQ+ RV A R P ++L DEPT +LD ET + L LN+
Sbjct: 134 LNHYPSE-LSGGQQQRVAIA----RALANDPKIILADEPTGNLDSETGKEVMELLRELNK 188
Query: 531 WDG-GLVLVSHDFRL 544
G +V+V+HD L
Sbjct: 189 EAGTTIVVVTHDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 6e-17
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 15/177 (8%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN--HLRIAQFHQHLAE 441
K++ F V R+ L+G NGAGKSTLL+L+ G P G V + L
Sbjct: 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGG 93
Query: 442 KLDMDMSALQY-----MIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496
+ +++ + + E ++ I F G +P+K S G ++R+ F
Sbjct: 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAF 153
Query: 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAH 550
A +P +LL+DE D + L E ++LVSHD I ++
Sbjct: 154 AIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 8e-17
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
P L+ +++ GY + + + RVA++GP+G+GKSTLL + G L PL G V
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 425 ---------RRHNHLR--IAQFHQ--HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471
+ +R ++ Q HL D + + + P +E++ AA+ R
Sbjct: 393 TLDGVPVSSLDQDEVRRRVSVCAQDAHL-----FDTTVRENLRLARPDATDEELWAALER 447
Query: 472 FGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
GL + +P LS G+R R+ A +LLLDEPT HLD ET
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETA 507
Query: 522 DSLAEALNEWDGGL--VLVSHD 541
D L E L G VL++H
Sbjct: 508 DELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 9e-17
Identities = 72/274 (26%), Positives = 118/274 (43%), Gaps = 29/274 (10%)
Query: 73 IRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127
I +E++S TF + D LE+ G +G++G +G GKSTLL I +E
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 128 SLEAVISCDEERLKLEKEAEILGAQEDGGGEQ----LER--VYE------RLEALDASTA 175
S V ++ L + Q+ G Q L V+E L + +
Sbjct: 62 S---VFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI 118
Query: 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235
++R AE+L +G + SGG + R+A+ARAL NP ILL DE T+ LD E
Sbjct: 119 KQRVAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 236 VWLEETLKKFDRIL----VVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSEL 291
+ E LK +R L V+I+H + + +C + + +L + + + +
Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAI 237
Query: 292 EENQMKQYKWEQEQIASMKEYIARFGHGSAKLAR 325
+++ E +I +E + R G L R
Sbjct: 238 ----TQEFIGETLEIDLPEELLERLESGDGPLLR 267
|
Length = 339 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 2e-16
Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 51/228 (22%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEAS 124
+ ++ LS T+ + D L + G LLG +GCGK+TLL I GEI
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 125 --DMSSLEAVISCDEER--------------LKLEKE-AEILGAQEDGGGEQLERVYERL 167
D++ + E R L + + A L + E RV E L
Sbjct: 61 GRDVTGVPP-----ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 168 EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
E + R L SGG + R+ALARAL P++LLLDEP
Sbjct: 116 ELVGLEGLLNRYPHEL-----------------SGGQQQRVALARALAREPSLLLLDEPL 158
Query: 228 NHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQN 271
+ LD + L E LK+ + ++H Q+ + I M
Sbjct: 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 2e-16
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 47/231 (20%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIG--------- 119
I ++++S + V D LE+ G ++G +G GKSTLL +G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 120 -EIEASDMSSLEAVISCDEERLKLEKEA-----------EILGAQEDGGGEQLERVYERL 167
I D++ L ++E KL ++ L E +E + +
Sbjct: 62 VLINGKDLTKLS-----EKELAKLRRKKIGFVFQNFNLLPDLTVLE-----NVE-LPLLI 110
Query: 168 EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
A ++ A E+L LG + KK + SGG + R+A+ARAL NP I+L DEPT
Sbjct: 111 AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 228 NHLD-------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271
+LD LE L E K+ + +++++H + L +I +++
Sbjct: 171 GNLDSKTAKEVLEL---LRELNKERGKTIIMVTHDPE-LAKYADRVIELKD 217
|
Length = 226 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-16
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 15/194 (7%)
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-----RR 426
++F Y I +L + +AL G NGAGK+TL K++ G + G +
Sbjct: 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64
Query: 427 HNHLR---IAQFHQHLAEKLDMD--MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM 481
R I Q + +L D L +KE E+ + L +
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD-AGNEQAETVLKDLDLYALKERH 123
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLV- 538
P+ +LS GQ+ R+ A +L+ DEPT+ LD + ++ + E + E G V+V
Sbjct: 124 PL-SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVI 182
Query: 539 SHDFRLINQVAHEI 552
+HD+ + +V +
Sbjct: 183 THDYEFLAKVCDRV 196
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 43/248 (17%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEAS 124
+ +E+LS + G ++ D + G G+LG NG GKSTLL + GE+
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 125 DMSSLEAVISCDEERLKLEKEAEILG--AQEDGGGEQLERVYE--------RLEALDAST 174
D L ++ A+ L Q L VYE L +
Sbjct: 63 G---------KDIASLSPKELAKKLAYVPQSPSAPFGL-TVYELVLLGRYPHLGLFGRPS 112
Query: 175 AEKRAA--EILYGLGFNKTMQAKKTRDF---SGGWRMRIALARALFINPTILLLDEPTNH 229
E E L LG ++ R SGG R R+ +ARAL ILLLDEPT+H
Sbjct: 113 KEDEEIVEEALELLG----LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 230 LDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285
LD+ + + E L+ +V++ H + ++I +++ ++ G + V
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI-VAQG-TPEEV 226
Query: 286 QTRSELEE 293
T L E
Sbjct: 227 LTEENLRE 234
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 4e-16
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 34/207 (16%)
Query: 367 LQFVEVTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
L+ V +G + + K+++ ++ VA+VGP+G+GKSTLL L+ G P G V
Sbjct: 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63
Query: 426 -------------RHNHLR-----IAQFHQHLAEKLDMDMSALQ------YMIKEYPGNE 461
R + Q +L D++ L+ + + G
Sbjct: 64 INGKDLTKLSEKELAKLRRKKIGFVFQNF-NLLP----DLTVLENVELPLLIAGKSAGRR 118
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET- 520
+ + GL + LS GQ+ RV A P ++L DEPT +LD +T
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 521 --IDSLAEALNEWDG-GLVLVSHDFRL 544
+ L LN+ G +++V+HD L
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDPEL 205
|
Length = 226 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-16
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 12/217 (5%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGE-IEASDMSSLEAVISCDEERLKLEKEAEI 148
D E G GLLG NG GK+TLL I + + + + ++ +
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79
Query: 149 L----GAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204
L G + + + RL L + R AE+ L + + ++ +FS G
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGM 138
Query: 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQDFLNG 261
+ ++A+ARAL +P+IL+LDEPT+ LD+ + LK R ++ SH +
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEA 198
Query: 262 VCTNIIHMQNKQLKFYTGNFDQ-YVQTRSE-LEENQM 296
+C +I + +K G+ + +T LEE
Sbjct: 199 LCDRVI-VLHKGEVVLEGSIEALDARTVLRNLEEIFA 234
|
Length = 245 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 374 FGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA 433
+ K++ F + RV ++G NGAGKSTLLKL+ G P G V+ ++A
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG--KVA 91
Query: 434 QFHQHLAEKLDMDMSALQ--YMIKEYPGNEEEKMRA---AIGRFGLTGKAQVMPMKNLSD 488
+ L D +++ + Y+ G +++ I F G P+K S
Sbjct: 92 PLIE-LGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS 150
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLD-------IETIDSLAEALNEWDGGLVLVSHD 541
G +R+ F+ + +P +LLLDE D +E ++ L E + +VLVSHD
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK----NKTIVLVSHD 206
Query: 542 FRLINQV 548
I Q
Sbjct: 207 LGAIKQY 213
|
Length = 249 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-16
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 42/238 (17%)
Query: 353 VFRFVD-------VGKLPPP----VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALV 399
VF ++D G L P +++F +V+F Y PD + K L F + VALV
Sbjct: 454 VFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALV 513
Query: 400 GPNGAGKSTLLKLM------TGDLVPLDGM-VRRHNHLRIAQFHQHLA----EKLDMDMS 448
GP+G+GKST+ L+ TG V LDG+ + +++H + H+ +A E + S
Sbjct: 514 GPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL---HRQVALVGQEPVLFSGS 570
Query: 449 A---LQYMIKEYPGNEEEKMRAA--------IGRFGLTGKAQVMPMKN-LSDGQRSRVVF 496
+ Y + + P +EE M AA I F +V + LS GQ+ R+
Sbjct: 571 VRENIAYGLTDTP--DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI 628
Query: 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
A R+P +L+LDE T+ LD E L E+ + ++L++H + + A +I V
Sbjct: 629 ARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILV 685
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 8e-16
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR-----RHNHLRIAQF 435
+++ L F + + L GPNG+GK+TLL+L+ G L P G ++ +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 436 HQHLAEKLDM--DMSALQYMI--KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491
H +L + M ++ + + + G EE + AA+ GL A + P LS GQ+
Sbjct: 76 H-YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-PFGYLSAGQK 133
Query: 492 SRVVFAWL--AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVS 539
RV A L + R + +LDEPT LD + AE + GG+V+ +
Sbjct: 134 RRVALARLLVSNR--PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 45/238 (18%)
Query: 370 VEVTFG-YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-----------DL 417
+ + +G N+ ++ + +VG +G+GKSTL +L+ G D
Sbjct: 9 LSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68
Query: 418 VPLDGMVRRHNHLRIAQ---------FH------QHLAEKLDMDMSALQYMIKEYPGNEE 462
PL R R Q + + L+E L +
Sbjct: 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL----------SKSQ 118
Query: 463 EKMRAAIGRFGLTGK-AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI--- 518
+++ + + GL P + LS GQR R+ A +P +L+LDEPT+ LD+
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHE-LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 519 -ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN-QAVTRWE-GDIMDFKLH 573
+ ++ L E E + +SHD L+ + I V +N Q V +++ H
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---RHNHLRIAQFHQH 438
+++ L F ++ + + GPNG GK+TLL+++ G L P G VR + + H++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 439 LA-----EKLDMDMSALQYM--IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491
+ L ++SAL+ + G + + A+ GLTG + P LS GQ+
Sbjct: 75 ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-PAAQLSAGQQ 133
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSH 540
R+ A L + + +LDEPT LD + LA L G ++L +H
Sbjct: 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
++ V +FG + ++++ V+ VA++GP+G GKSTLL+L+ G P G V
Sbjct: 6 IEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 427 HN------HLRIAQFHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGL 474
I Q A L ++ L + ++ E E+ + + GL
Sbjct: 63 DGRPVTGPGPDIGYVFQEDA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NE 530
G P LS G R RV A +P +LLLDEP LD T + L + L E
Sbjct: 121 AGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 531 WDGGLVLVSHDFR 543
++LV+HD
Sbjct: 180 TRKTVLLVTHDVD 192
|
Length = 248 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 42/226 (18%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
IRI ++ F + D L++ G LLG +G GKSTLL I +E D
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD----AGR 58
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLER--------VYE--------RLEALDASTAE 176
I + L + L ++ G + V + R E +
Sbjct: 59 IRLNGRVLF---DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR 115
Query: 177 KRAAEILYGLGFNKTMQ-----AKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
R E+L + +Q + SGG R R+ALARAL + P +LLLDEP LD
Sbjct: 116 ARVEELL------RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169
Query: 232 ------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271
L WL + + V ++H Q+ + ++ +
Sbjct: 170 AKVRKELRR--WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213
|
Length = 345 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-15
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 21/215 (9%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
++F V+F Y + K++ F ++ +VA+VGP+G+GKSTL+KL+ P G +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 427 HNHLRIAQFHQHLAEKLDMDMSALQYM---IKE--YPGNE---EEKMRAAIGRFGLTGKA 478
L +++ + I+E G +E++ A+
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFI 448
Query: 479 QVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
+P NLS GQR R+ A R P +L+LDE T+ LD ET + +AL
Sbjct: 449 ANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508
Query: 529 NEWDGG--LVLVSHDFRLINQVAHEIWVCENQAVT 561
+ G ++++H I A I V +N +
Sbjct: 509 KKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIV 542
|
Length = 567 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-15
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226
L A+ RA E L +G + + SGG + R+A+ARAL P +LLLDEP
Sbjct: 58 FFGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117
Query: 227 TN 228
T
Sbjct: 118 TA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-15
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 38/186 (20%)
Query: 372 VTFGYTPDN--LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH-- 427
V+F Y P + +N+ F ++ +A++GP+G+GKSTL +L+ G L P G VR
Sbjct: 6 VSFRY-PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA 64
Query: 428 --NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
+ + H+ L + + G+ E +
Sbjct: 65 DISQWDPNELGDHVG--------YLPQDDELFSGSIAENI-------------------- 96
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA---LNEWDGGLVLVSHDF 542
LS GQR R+ A Y P +L+LDEP +HLD+E +L +A L ++++H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 543 RLINQV 548
+
Sbjct: 157 ETLASA 162
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 28/199 (14%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ IE +S +F G +++ D L + G +LG +GCGKSTLL I +E
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE---- 59
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQL---ERVYE------RLEALDASTAEKRAAEIL 183
+ D + QED L V + L + A +RA E+L
Sbjct: 60 VLLDGRPVTGPGPDIGYVFQEDA----LLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 184 --YGL-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACV 236
GL GF K SGG R R+A+ARAL P +LLLDEP LD E
Sbjct: 116 ELVGLAGFED----KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQD 171
Query: 237 WLEETLKKFDRILVVISHS 255
L ++ + +++++H
Sbjct: 172 ELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
++F VTF Y P + K++ F + +VA+VGP+G+GKST+L+L+ G +
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 427 HNHLRIAQFHQH-LAEKLDM---DM----SALQYMIKEY--PGNEEEKMRAAIGRFGLTG 476
I + L + + D + Y I+ Y P +E++ A +
Sbjct: 61 DGQ-DIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIR-YGRPDATDEEVIEAAKAAQIHD 118
Query: 477 KAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
K P LS G++ RV A + P +LLLDE T+ LD T +
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 527 ALNEWDGG--LVLVSHDFRLINQVAHEIWVCEN 557
AL + G ++++H I A +I V ++
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKD 210
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-15
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
L V+F Y + KNL + ++AL+G +G+GKSTLL+L+TGDL P G +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI- 59
Query: 426 RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
L+ +S+L ++ + P + +R +GR
Sbjct: 60 --------TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR-------------R 98
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFR 543
S G+R R+ A + + ++LLDEPT LD T L + E D L+ ++H
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLT 158
Query: 544 LINQVAHEIWVCEN 557
I + +I EN
Sbjct: 159 GIEHM-DKILFLEN 171
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 6e-15
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 27/195 (13%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-- 424
L+ + T+G +L V+ +AL+GP+G GK+TLL+L+ G P G +
Sbjct: 3 LKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 425 --RRHNHL-----RIAQFHQHLAEKLDMDMSALQ------YMIKEYPGNEEEKMRAAIGR 471
R + I Q A L ++ + + ++R +
Sbjct: 60 DGRDVTGVPPERRNIGMVFQDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 472 FGLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDSL----AE 526
GL G P + LS GQ+ RV A LA R+P +LLLDEP + LD + + L E
Sbjct: 118 VGLEGLLNRYPHE-LSGGQQQRVALARALA-REPSLLLLDEPLSALDAKLREELREELKE 175
Query: 527 ALNEWDGGLVLVSHD 541
E + V+HD
Sbjct: 176 LQRELGITTIYVTHD 190
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 7e-15
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 43/244 (17%)
Query: 41 SAADKAASEMAA--MQISDRTCTGVLCSHPL-SRDIRIESLSVTFHGHDLIVDS-ELELN 96
A AA+E + + R G + + +SV + G + +
Sbjct: 287 RADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVP 346
Query: 97 YGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDG 155
G R L+G +G GKSTLL + G ++ E + + + A D
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDP------------TEGSIAVN-GVPLADADADS 393
Query: 156 GGEQLERVYE-------------RLEALDASTAEKRAAEILYGL---------GFNKTMQ 193
+Q+ V + RL DAS AE R A GL G + T
Sbjct: 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLD-TPI 452
Query: 194 AKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVV 251
+ SGG R+ALARA + +LLLDEPT HLD E + E L+ R +++
Sbjct: 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLL 512
Query: 252 ISHS 255
++H
Sbjct: 513 VTHR 516
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 7e-15
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 407 STLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK----------LDMDMSALQY-MIK 455
STLLKL+TG L P G + + L K L +++ +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 456 EYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ + A+ R GL P+ LS GQ+ RV A ++P +LLLDEPT
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 8e-15
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
IRI+ L V + + ++ D LE+ G L+G +GCGK+TLL AI G ++A+ ++ A
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQL---ERVYERLEALDASTAE--KRAAEILYGL 186
+ D K L Q L + V L A A+ +R A+ L +
Sbjct: 66 IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV 125
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFD 246
G A SGG + RIA+ARA+ I P +LLLDEP + LD + E +
Sbjct: 126 GLGDA-AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184
Query: 247 RIL-----VVISHSQD 257
L + ++H QD
Sbjct: 185 EELPELTILCVTHDQD 200
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 9e-15
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 39/201 (19%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH 429
+ +FG + K +D V +A++GP+G+GKSTLL+L+ G L P G V
Sbjct: 6 LTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62
Query: 430 --------------LRIAQFHQHLAEKLDMDMSALQ---YMIKEYPGNEEEKMRA----A 468
R+ Q A L ++ + + ++E+ EE++R
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLD-------IET 520
+ GL G + P LS G + RV A LA P +LL DEPT LD +
Sbjct: 121 LEAVGLRGAEDLYP-AELSGGMKKRVALARALALD-PELLLYDEPTAGLDPIASGVIDDL 178
Query: 521 IDSLAEALNEWDGGLVLVSHD 541
I SL + L ++V+HD
Sbjct: 179 IRSLKKELG---LTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 61/194 (31%), Positives = 82/194 (42%), Gaps = 22/194 (11%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDG 422
L+ V+ Y L+ + L VALVGP+G GKSTLL+++ G P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALE-DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59
Query: 423 MVR-------RHNHLRIAQFHQH--LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRF 472
V R F Q L +D AL ++ P E E+ +
Sbjct: 60 EVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV 119
Query: 473 GLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIET----IDSLAEA 527
GL+G P LS G R RV A LA P +LLLDEP + LD T + L +
Sbjct: 120 GLSGFENAYP-HQLSGGMRQRVALARALAVD-PDVLLLDEPFSALDALTREQLQEELLDI 177
Query: 528 LNEWDGGLVLVSHD 541
E ++LV+HD
Sbjct: 178 WRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 57/195 (29%), Positives = 80/195 (41%), Gaps = 41/195 (21%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----LRIAQFHQHLA 440
V L R VA++GPNGAGKSTLL+ ++G+L P G VR + A+ + A
Sbjct: 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79
Query: 441 ---------------EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
E + M + ++ + AA+ + L A
Sbjct: 80 VLPQHSSLSFPFTVEEVVAMGRAPHG----LSRAEDDALVAAALAQVDLAHLAG-RDYPQ 134
Query: 486 LSDGQRSRVVFA------WLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLV 536
LS G++ RV A W P LLLDEPT+ LD+ + LA L G V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 537 L-VSHDFRLINQVAH 550
+ V HD +N A
Sbjct: 195 IVVLHD---LNLAAR 206
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 36/216 (16%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
+V LVG NG GKSTLL L+ ++ G + ++A +Q E + AL+Y+I
Sbjct: 29 KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQ---ETPALPQPALEYVI 85
Query: 455 ---KEYPGNEEE----------------------------KMRAA--IGRFGLTGKAQVM 481
+EY E + + RAA + G + +
Sbjct: 86 DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER 145
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD 541
P+ + S G R R+ A + +LLLDEPTNHLD++ + L + L + G L+L+SHD
Sbjct: 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHD 205
Query: 542 FRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
++ + +I E Q++ + G+ F++ +
Sbjct: 206 RDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATR 241
|
Length = 638 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 48/232 (20%)
Query: 74 RIESLSVTFH-----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLL------------- 115
RIE +V+F L S L + G + ++G G GKSTLL
Sbjct: 2 RIEFRNVSFSYPNQEIPALDNVS-LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 116 -----TAIGEIEASDMSSLEAVISCDEERLKL----EKEAEILGAQ--EDGGGEQLERVY 164
T I +++ +D L I + + L ++ LGA +D ER+
Sbjct: 61 VLLDGTDIRQLDPAD---LRRNIGYVPQDVTLFYGTLRDNITLGAPLADD------ERI- 110
Query: 165 ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224
L A + + + G + ++ R SGG R +ALARAL +P ILLLD
Sbjct: 111 --LRAAELAGVTDFVN--KHPNGLD-LQIGERGRGLSGGQRQAVALARALLNDPPILLLD 165
Query: 225 EPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
EPT+ +D+ + L+E L++ D+ L++I+H L+ + II M + ++
Sbjct: 166 EPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH 429
+ +FG D + K + V+ V ++GP+G+GKSTLL+ + G P G +
Sbjct: 8 LSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64
Query: 430 LRIAQFHQH-LAEKLDM---------DMSALQYMI------KEYPGNE-EEKMRAAIGRF 472
+ L K+ M ++ L+ + K+ E EK + +
Sbjct: 65 DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV 124
Query: 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNHLDIETIDSLAEAL 528
GL KA P LS GQ+ RV A R P ++L DEPT+ LD E + + + +
Sbjct: 125 GLADKADAYP-AQLSGGQQQRVAIA----RALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 529 NEW-DGGL--VLVSHDFRLINQVAHEIW 553
+ + G+ ++V+H+ +VA +
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVI 207
|
Length = 240 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 58/240 (24%)
Query: 73 IRIESLSVTFHGHD-----LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127
I I +L+ + GH ++ D LE+N G L G +G GK+TLLT IG
Sbjct: 2 ISIRNLNHYY-GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIG-------- 52
Query: 128 SLEAVISCDEERLKLEKEAEILGAQEDGGGE----QLER----VYERLEALDASTAEK-- 177
+ S E LK +LG + G E QL R +++ L TA +
Sbjct: 53 ---GLRSVQEGSLK------VLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNV 103
Query: 178 -----------------RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
RA +L +G + + SGG + R+A+ARAL P +
Sbjct: 104 QMALELQPNLSYQEARERARAMLEAVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRPKL 162
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDR-----ILVVISHSQDFLNGVCTNIIHMQNKQLK 275
+L DEPT LD ++ + E ++K R IL+V +H L+ V I+HM++ +L
Sbjct: 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIV-THDNRILD-VADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 73 IRIESLSVTF---HGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMS 127
I ++L+ F VD + G GLLG NG GK+T L + G +E
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 128 SLEAVISCDEERLKLEKEAEILGAQEDGGG--------EQLERVYERLEALDASTAEKRA 179
+ D + E + G D G E LE + L L R
Sbjct: 62 ATVDGF--DVVKEPAEARRRL-GFVSDSTGLYDRLTARENLE-YFAGLYGLKGDELTARL 117
Query: 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE 239
E+ LG + + ++ FS G R ++A+ARAL +P +LLLDEPT LD+ A L
Sbjct: 118 EELADRLGMEELLD-RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 240 ETLKKFDRI---LVVISHSQDFLNGVCTNIIHM 269
E +++ + ++ +H + +C ++ +
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVL 209
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 34/192 (17%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------------RRHNH 429
+ K + + VA+VG +G+GKSTLL L+ G P G V
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 430 LR------IAQFHQHLAEKLDMDMSALQ-YMIKEYPGN---EEEKMRAA--IGRFGLTGK 477
LR I QFH L D +AL+ + G +E K RA + + GL +
Sbjct: 80 LRNKKLGFIYQFHHLLP-----DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR 134
Query: 478 AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG---- 533
P LS G+R RV A QP ++L DEPT +LD + + + E +
Sbjct: 135 INHRP-SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193
Query: 534 GLVLVSHDFRLI 545
++V+HD L
Sbjct: 194 SFLVVTHDLELA 205
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVR------RHNHLRIAQ-----FHQHLAEKLD 444
VAL+GPNGAGKSTL L+T V +G + R F Q LD
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQ---PTLD 86
Query: 445 MDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498
+D+S Q + + E ++ + R GL +A ++ L+ G R RV A
Sbjct: 87 LDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADD-KVRELNGGHRRRVEIAR 145
Query: 499 LAYRQPHMLLLDEPTNHLDIE 519
+P +LLLDEPT LD
Sbjct: 146 ALLHRPALLLLDEPTVGLDPA 166
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 59/216 (27%), Positives = 87/216 (40%), Gaps = 30/216 (13%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ V+ FG ++ + VAL+GP+GAGKSTLL+++ G P G +R
Sbjct: 4 RINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 426 RHNHL------------RIAQFHQHLAEKLDMDMSALQ------YMIKEYPGNEEEKMRA 467
+ + ++ QH A L M+ + KE P E + R
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 468 A--IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETI 521
+ L G A P + LS GQR RV A +P +LLLDEP LD E
Sbjct: 119 EELLRLVQLEGLADRYPAQ-LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177
Query: 522 DSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
L + + V V+HD ++A + V
Sbjct: 178 RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213
|
Length = 345 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 4e-14
Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 22/183 (12%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-----------------RR 426
K L+F + +AL+G NGAGKSTLL + G L P G V R+
Sbjct: 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQ 68
Query: 427 HNHLRIAQFHQHL-AEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
L L A +D D++ + E ++R A+ G +G + P
Sbjct: 69 RVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHC 127
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA---LNEWDGGLVLVSHDF 542
LS G++ RV A +P +LLLDEPT LD + + L +V+ +HD
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187
Query: 543 RLI 545
L
Sbjct: 188 DLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 5e-14
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 44/212 (20%)
Query: 102 GLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCDEERLKLEKEA----EIL 149
G++G NG GKSTL I G I+ + L V D+ R L+ EI
Sbjct: 354 GIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYV---DQSRDALDPNKTVWEEIS 410
Query: 150 GAQED---GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRM 206
G + G E R Y + F Q KK SGG R
Sbjct: 411 GGLDIIKVGNREIPSRAY------------------VGRFNFKGGDQQKKVGVLSGGERN 452
Query: 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNI 266
R+ LA+ L +LLLDEPTN LD+E LEE L +F VVISH + FL+ + T+I
Sbjct: 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHI 512
Query: 267 IHMQ-NKQLKFYTGNFDQYVQTRSELEENQMK 297
+ + + Q++++ GNF +Y EE++ +
Sbjct: 513 LAFEGDSQVEWFEGNFQEY-------EEDKKR 537
|
Length = 556 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 5e-14
Identities = 64/217 (29%), Positives = 93/217 (42%), Gaps = 24/217 (11%)
Query: 367 LQFVEVTFGYTPDNLI-YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG---------- 415
L+ V FG T + K++ V ++G +GAGKSTL++ + G
Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63
Query: 416 ----DLVPLDGMVRRHNHLRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRA 467
DL L G R RI QH L+ + + AL I P E EE++
Sbjct: 64 VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLE 123
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
+ GL KA P LS GQ+ RV A P +LL DE T+ LD ET S+
Sbjct: 124 LLELVGLEDKADAYP-AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182
Query: 528 L----NEWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
L E +VL++H+ ++ ++ + V E V
Sbjct: 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-14
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---RHNHLRIAQFHQH 438
++ L F + + + GPNG+GK+TLL+++ G PL G V + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 439 L-----AEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493
L A + +S L+ + + + +E++ A+ R GL G P+ LS GQ+ R
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-PVAQLSAGQQRR 133
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN---EWDGGLVLVSH 540
V A L + +LDEPT LD + AEA+ G +VL +H
Sbjct: 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 33/189 (17%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV---------------RRHN 428
K++ ++ VAL+GP+GAGKSTLL+ + G + P G V R+
Sbjct: 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77
Query: 429 HLRIAQFHQH--LAEKLDM----------DMSALQYMIKEYPGNEEEKMRAAIGRFGLTG 476
+I Q L E+L + S + + +P E+++ AA+ R GL
Sbjct: 78 R-QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD 136
Query: 477 KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDG 533
KA LS GQ+ RV A +QP ++L DEP LD + + L + +N +G
Sbjct: 137 KAYQR-ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195
Query: 534 GLVLVS-HD 541
V+VS H
Sbjct: 196 ITVIVSLHQ 204
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV---------RRHNHLRIAQ 434
K + F ++ V +GPNGAGK+T LK+++G L P G V RR LR
Sbjct: 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG 97
Query: 435 FHQHLAEKLDMDMSALQ--YMIKEYPGNEEEKMRAAIGRFG-LTGKAQVM--PMKNLSDG 489
+L D+ + Y++ + + + L +++ P++ LS G
Sbjct: 98 VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLG 157
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALN-EWDGGLVLVSHDFRLI 545
QR R A +P +L LDEPT LD+ E I + + N E ++L SH + I
Sbjct: 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDI 217
Query: 546 NQVA 549
+A
Sbjct: 218 EALA 221
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-14
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 365 PVLQFVEVTFGYTPDNL---IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD 421
+LQ + Y ++ + N+ F + +A+VG +G+GKSTLL L+ G P
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 422 G------------------MVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI-KEYPGNEE 462
G +R I QFH L + ++ A+ +I K+ P
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 463 EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID 522
+ + GL +A P LS G+R RV A P ++L DEPT +LD D
Sbjct: 124 SRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 523 SLAEALNEWD----GGLVLVSHDFRL 544
S+ + L E + ++V+HD +L
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQL 208
|
Length = 233 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-14
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 36/208 (17%)
Query: 72 DIRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI- 121
+ + LS + G ++D L+L G R +LG +G GKSTLL + GE+
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 122 ------EASDMSSLEAVISCDEERLKLEKEAEILG----AQEDGGGEQLERVYER--LEA 169
+ D + +S + L + + A+ D E+L ER L
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARPDATDEELWAALERVGLAD 452
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
+ + G + + R SGG R R+ALARAL + ILLLDEPT H
Sbjct: 453 WLRALPD----------GLDTVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEH 501
Query: 230 LDLEACVWLEETLKKFD--RILVVISHS 255
LD E L E L R +V+I+H
Sbjct: 502 LDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 61/190 (32%), Positives = 81/190 (42%), Gaps = 36/190 (18%)
Query: 369 FVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVPL 420
F V+F Y PD I K L + VALVG +G GKST++ L+ T + L
Sbjct: 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL 62
Query: 421 DG-MVRRHN--HLR--IAQFHQHLAEKLDMDMSALQYMIKE------YPGNEEEKMRAA- 468
DG +R N LR I Q E + D + I E +EE AA
Sbjct: 63 DGVDIRDLNLRWLRSQIGLVSQ---EPVLFDGT-----IAENIRYGKPDATDEEVEEAAK 114
Query: 469 ---IGRF--GLTGKAQVMPMKN---LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
I F L + + LS GQ+ R+ A R P +LLLDE T+ LD E+
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 521 IDSLAEALNE 530
+ EAL+
Sbjct: 175 EKLVQEALDR 184
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 1e-13
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH----NHLRIAQ 434
+ +++ L F ++ V + GPNGAGK++LL+++ G P G V R +
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DE 71
Query: 435 FHQ------HLAEKLDMDMSA---LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
+HQ H + +++A L++ + + ++E + A+ + GL G V P++
Sbjct: 72 YHQDLLYLGHQP-GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-PVRQ 129
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLV-SH 540
LS GQ+ RV A L + + +LDEP +D + + L L + GG+V++ +H
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-13
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 40/230 (17%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I +++LS T+ G V L + G ++G +G GKSTLL +G ++
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 129 LEAVISCDEE--RLKLEKEAEILGAQEDGGGEQLERVY------ERLEALD--------- 171
V + +L ++ A + V+ L AL+
Sbjct: 61 ---VRVDGTDISKLSEKELAAFRR-------RHIGFVFQSFNLLPDLTALENVELPLLLA 110
Query: 172 ---ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
+RA E+L +G + + SGG + R+A+ARAL +P I+L DEPT
Sbjct: 111 GVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 229 HLDLEAC--VW--LEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+LD E V L E K+ +VV++H + L II +++ ++
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 23/196 (11%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--------------DLVPLDGMVRRHNH 429
++ + ++G +GAGKSTLL+L+ DL L R
Sbjct: 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLR 82
Query: 430 LRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKN 485
+I QH L+ + + A + P E ++++ + GL+ KA P
Sbjct: 83 QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQ 141
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL---NEWDG-GLVLVSHD 541
LS GQ+ RV A P +LL DE T+ LD ET S+ E L N G +VL++H+
Sbjct: 142 LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE 201
Query: 542 FRLINQVAHEIWVCEN 557
++ ++ + V +
Sbjct: 202 MEVVKRICDRVAVLDQ 217
|
Length = 339 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-13
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 381 LIYKNLDFGVDLD----SRVALVGPNGAGKSTLLKLMTGDLVPLDG--MVRRHNHLRIAQ 434
Y++L DL+ VA++GP+GAGKSTLL L+ G + P G V +H +A
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 435 F---------------HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ 479
+ H + + + + + + E ++EK+ A + G+
Sbjct: 68 YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE----QQEKVVDAAQQVGIADYLD 123
Query: 480 VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGL 535
+P + LS GQR RV A R +LLLDEP + LD E + + + +E L
Sbjct: 124 RLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTL 182
Query: 536 VLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566
++V+H +A +I V + + D
Sbjct: 183 LMVTHHLSDARAIASQIAVVSQGKI-KVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
P + + V FG T + +D V S V LVGPNGAGK+TLL+ + G L P G
Sbjct: 2 PMIDVSDLSVEFGDTT---VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG 58
Query: 423 MVR-----------RHNHLRIAQFHQHLAEKLDMDMSALQYM-----IKEYPGNEEEKMR 466
V R R+A Q + + D+ + M + E
Sbjct: 59 TVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRA 118
Query: 467 A---AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----E 519
A A+ R G+ A P+ +LS G+R RV+ A + +LLLDEPT LDI
Sbjct: 119 AVERAMERTGVAQFAD-RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 520 TIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561
T++ + L + V HD L + E+ + + V
Sbjct: 178 TLELVRR-LVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218
|
Length = 402 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 21/206 (10%)
Query: 363 PPPVLQFVEVTFGY-TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD 421
L+ V+F Y KN + + +VA++G +G+GKSTLL+L+ G P
Sbjct: 333 TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392
Query: 422 GMVRRHNHLRIAQFHQHLAEKLDM--------DMSALQYMIKEYPGNEEEKMRAAIGRFG 473
G + + + Q L E + + + + P +E++ AA+ + G
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVG 452
Query: 474 LTGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523
L + P LS G+R R+ A + LLDEPT LD T
Sbjct: 453 LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512
Query: 524 LAEALNEW--DGGLVLVSHDFRLINQ 547
+ L E L++V+H R + +
Sbjct: 513 VLALLFEHAEGKTLLMVTHRLRGLER 538
|
Length = 573 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 34/243 (13%)
Query: 67 HPLSRDIRIESLSVTFHGHDLIV-----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121
H S ++ + G + D E+ G R G++G NG GKSTLL I I
Sbjct: 17 HEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76
Query: 122 EASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQ-----LERVYERLEALDASTAE 176
S + ++ K A ++ G G E +Y R L + E
Sbjct: 77 YKPT--SGKVKVT--------GKVAPLIEL---GAGFDPELTGRENIYLRGLILGLTRKE 123
Query: 177 --KRAAEIL--YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD- 231
++ EI+ LG K +S G R+A + A + P ILLLDE D
Sbjct: 124 IDEKVDEIIEFAELGDFIDQPVKT---YSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180
Query: 232 --LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRS 289
E C+ L + ++ +V++SH + C I +++ Q++ G+ ++ +
Sbjct: 181 AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME-GSPEEVIPAYE 239
Query: 290 ELE 292
E
Sbjct: 240 EDL 242
|
Length = 249 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-13
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET---LKKFDRILVVISH 254
SGG R R+ LARAL+ NP IL+LDEP +HLD+E L + LK +VI+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-13
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMV 424
++ ++ TPD ++ K+L F + R+ + GP+G GKS+L + + L P G +
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWPWGSGRI 58
Query: 425 RRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP-M 483
+ Q Y+ G +R + + P
Sbjct: 59 GMPEGEDLLFLPQR------------PYLP---LGT----LREQL----------IYPWD 89
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSH 540
LS G++ R+ FA L +P + LDE T+ LD E+ D L + L E ++ V H
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGH 146
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-13
Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 23/217 (10%)
Query: 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
+++F VTF Y PD L+ +++ F + ALVGP+G+GKST++ L+ P G
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 424 VRRHNHLRIAQFHQHLAEKLDM--------DMSALQYMIKEYPGNEEEKMRAAIGRFGLT 475
V H++L K+ + S + E ++ A +
Sbjct: 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 476 GKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA 525
+ LS GQ+ RV A R P +L+LDE T+ LD E+ +
Sbjct: 131 SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
Query: 526 EALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAV 560
+AL +W +++++H + + A +I V + +
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 102 GLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERLKLEKEAEILG--AQEDG--- 155
GLLG NG GK+T L + GE+ +S A I+ R + + LG Q D
Sbjct: 32 GLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFD 88
Query: 156 --GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213
+ R Y RL+ L S ++ +L LG K+ R SGG + +++LA A
Sbjct: 89 ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-KRARTLSGGMKRKLSLAIA 147
Query: 214 LFINPTILLLDEPTNHLDLEA--CVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHM 269
L P++LLLDEPT+ LD + +W + + + R +++ +HS D +C I M
Sbjct: 148 LIGGPSVLLLDEPTSGLDPASRRAIW--DLILEVRKGRSIILTTHSMDEAEALCDRIAIM 205
Query: 270 QNKQLKFY 277
+ +L+
Sbjct: 206 SDGKLRCI 213
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 29/230 (12%)
Query: 73 IRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
I +E+LS T+ +G + D L +N G L+G +G GKSTLL + + S
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS--- 57
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDA------------------- 172
V+ + KL+ +A ++ G Q + ERL L+
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 173 STAEK-RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
EK RA L +G ++ SGG + R+A+ARAL P ++L DEP LD
Sbjct: 118 PKEEKQRALAALERVGL-LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 232 LEACVWLEETLKKFDR---ILVVIS-HSQDFLNGVCTNIIHMQNKQLKFY 277
+ + + LK+ +R I V++S H D I+ +++ ++ F
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-13
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 39/200 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--- 121
+ ++LS F + + L + YGLLG NG GKSTLL I GEI
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60
Query: 122 ----EASDMSSLEAVISCDEERLKLEKEA--EILGAQEDGGGEQLERVYERLEALDASTA 175
D+ + ++I E E L A+E+ +V+ L L S
Sbjct: 61 GHPWTRKDLHKIGSLI---------ESPPLYENLTAREN------LKVHTTLLGLPDSRI 105
Query: 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235
+ E+L + T + KK + FS G + R+ +A AL +P +L+LDEPTN LD
Sbjct: 106 D----EVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160
Query: 236 VWLEETLKKFDR--ILVVIS 253
L E ++ F I V++S
Sbjct: 161 QELRELIRSFPEQGITVILS 180
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG--------MVRRHNHLR--IA 433
++F V +GPNGAGK+T ++++T L P G +VR +R I
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG 69
Query: 434 QFHQHLAEKLDMDMSALQ--YMIKE---YPGNEEEKMRAA--IGRFGLTGKAQVMPMKNL 486
Q+ + +D D++ + M+ P +E E+ RA + F L A P+
Sbjct: 70 IVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEE-RAEELLELFELGEAAD-RPVGTY 125
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDGGLVLVSHDFR 543
S G R R+ A QP +L LDEPT LD T I AL E ++L +H
Sbjct: 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185
Query: 544 LINQVAHEI 552
+++ I
Sbjct: 186 EADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-13
Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 61/269 (22%)
Query: 45 KAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSE-----------L 93
A + +I G L + PL + + +LS + + E
Sbjct: 256 AAVPRLGDEKIIRLPRRGPLRAEPL---LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 94 ELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE---------ASDMSSLEAVI--- 133
+L G GL+G +G GKSTL + G I ++ L I
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 134 ------SCDEERLKLEKEAEILGAQ-EDGGGEQLERVYERLEALDASTAEKRAAEILYGL 186
S + + AE L G E+ RV E LE + E L
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP------PEFLD-- 424
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD--LEACV--WLEETL 242
+ + SGG R R+A+ARAL + P +L+LDEP + LD ++A V L++
Sbjct: 425 --------RYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476
Query: 243 KKFDRILVVISHSQDFLNGVCTNIIHMQN 271
++ + ISH + + + M +
Sbjct: 477 EELGLTYLFISHDLAVVRYIADRVAVMYD 505
|
Length = 539 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 8e-13
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 25/196 (12%)
Query: 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG--MVRRHN---HLR 431
+L V L+G NGAGK+T LK++TG+L P G + ++ +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71
Query: 432 IAQFH-----QHLAEKLDMDMSALQYM-----IKEYPGNEEEK-MRAAIGRFGLTGKAQV 480
A+ Q A L +++ +++ +K P +E ++ + + GLT KA
Sbjct: 72 AARQSLGYCPQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129
Query: 481 MPMKNLSDGQRSRVVF--AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG--LV 536
+ LS G + ++ A + P +LLLDEPT+ LD + ++ + + E G ++
Sbjct: 130 -RARTLSGGMKRKLSLAIALIGG--PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII 186
Query: 537 LVSHDFRLINQVAHEI 552
L +H + I
Sbjct: 187 LTTHSMDEAEALCDRI 202
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 9e-13
Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 36/250 (14%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE-A 131
I++ ++ + H + D L+ G LLG +G GKS+LL + +E +L A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 132 VISCDEERLKLEKEAEILGAQEDGGG--------------EQLERVYERLEALDASTAEK 177
D + +K I + + G E L R+ L A
Sbjct: 63 GNHFDFSKTPSDKA--IRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA 120
Query: 178 RAAEILYGLGFNKTMQAKKTRD-----FSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
RA ++L K ++ K D SGG + R+A+ARAL + P +LL DEPT LD
Sbjct: 121 RAEKLL------KRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 233 EACVWLEETLKKFDR---ILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRS 289
E + +K+ V+++H + + +++M+N + G+ + + ++
Sbjct: 175 EITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI-VEQGDASCFTEPQT 233
Query: 290 ELEENQMKQY 299
E K Y
Sbjct: 234 E----AFKNY 239
|
Length = 242 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-12
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEA 123
I +E+LS T+ G L+ D L +N G R GL+G NG GKSTLL I GE+E
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 39/203 (19%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L+ V+ Y + ++ ++ VAL+GP+G+GKSTLL+ + G P G +
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 427 HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP---- 482
+ + + + +++ + P
Sbjct: 60 DGEDLTDLEDELPPLRRR-----IGMVFQDF---------------------ALFPHLTV 93
Query: 483 MKN----LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDG-G 534
++N LS GQ+ RV A P +LLLDEPT+ LD T + +L ++L G
Sbjct: 94 LENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 535 LVLVSHDFRLINQVAHEIWVCEN 557
+VLV+HD ++A + V +
Sbjct: 154 VVLVTHDLDEAARLADRVVVLRD 176
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-12
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 25/174 (14%)
Query: 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
PP+L + F + ++ LDF VD + + G NGAGK+TLL+++ G L G
Sbjct: 9 PPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ 67
Query: 424 VRRHNH-LRIAQFHQHLA-----EKLDMDMSALQ----------YMIKEYPGNEEEKMRA 467
++ + +A L D+S L+ K+ PG+
Sbjct: 68 IQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGS------- 120
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
A+ GL G + ++ LS GQ+ R+ A L + LLDEP +LD+E I
Sbjct: 121 ALAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGI 173
|
Length = 214 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK 144
H+++ L+ N G ++G +G GKST L I +E E I + + + L +
Sbjct: 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGSIVVNGQTINLVR 73
Query: 145 EAEILGAQEDGGGEQLERVYERL--------------------EA------LDASTAEKR 178
+ + G + QL + RL EA L A +R
Sbjct: 74 DKD--GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARER 131
Query: 179 AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE---AC 235
A + L +G ++ Q K SGG + R+++ARAL + P +LL DEPT+ LD E
Sbjct: 132 AVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEV 191
Query: 236 VWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQ 270
+ + + L + + +VV++H F V +++I +
Sbjct: 192 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------ 424
++ + Y+ N++F +SR+A++GPNGAGKSTL + G L P G V
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 425 -RRHNHLRIAQFHQHLAEKLDMDM--SALQYMIKEYPGN---EEE----KMRAAIGRFGL 474
+ N + +F + + D + ++ I P N +EE ++ +A+ GL
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN----E 530
+P +LS G++ RV A + +P +L+LDEPT LD + + L + LN
Sbjct: 128 EELRDRVP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186
Query: 531 WDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561
+ ++ +H L+ ++A I+V + +
Sbjct: 187 YGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
Length = 277 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I I++L +F ++ +L + G ++G +G GKSTLL I +E D
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD----SGT 56
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD-------------ASTAEKRA 179
I D +L +K+ Q+ G Q ++ L L+ + AE+RA
Sbjct: 57 IIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA 116
Query: 180 AEILYGLGFNKTMQAKKT---RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
E+L +G + K SGG + R+A+ARAL +NP ++L DEPT+ LD E
Sbjct: 117 LELLEKVG----LADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE--- 169
Query: 237 WLEETLKKFDRI------LVVISHSQDFLNGVCTNIIHM 269
+ E L + +VV++H F V +I M
Sbjct: 170 LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 47/216 (21%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM-------TGDLVPLDG 422
+ +FG D + K +D V V ++GP+G+GKSTLL+ + +G ++ +DG
Sbjct: 6 LHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII-IDG 61
Query: 423 MVRRHNHLRIAQFHQHLAEKLDM---------DMSALQYM------IKEYPGNE-EEKMR 466
+ + I + Q + M ++ L+ + +K E EE+
Sbjct: 62 LKLTDDKKNINELRQKVG----MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETID--- 522
+ + GL KA P LS GQ+ RV A LA P ++L DEPT+ LD E +
Sbjct: 118 ELLEKVGLADKADAYP-AQLSGGQQQRVAIARALAMN-PKVMLFDEPTSALDPELVGEVL 175
Query: 523 ----SLAEALNEWDG-GLVLVSHDFRLINQVAHEIW 553
LAE +G +V+V+H+ +VA +
Sbjct: 176 DVMKDLAE-----EGMTMVVVTHEMGFAREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-12
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 22/201 (10%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+++F V+ Y + + F + L G +GAGKSTLLKL+ G P G +
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 426 RHNH------------LR-----IAQFHQHLAEKLDMDMSALQYMIKEYPGNE-EEKMRA 467
H LR I Q H L ++ D A+ +I G++ ++ A
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA 120
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSL 524
A+ + GL KA+ P++ LS G++ RV A +P +LL DEPT +LD E I L
Sbjct: 121 ALDKVGLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179
Query: 525 AEALNEWDGGLVLVSHDFRLI 545
E N +++ +HD LI
Sbjct: 180 FEEFNRVGVTVLMATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 2e-12
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD 541
+ LS G+R RV L +P MLLLDEPTNHLD E++ L + L+++ G +V V+HD
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219
Query: 542 FRLINQVAHEIWVCE 556
++ VA W+ E
Sbjct: 220 RYFLDNVAG--WILE 232
|
Length = 556 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-12
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQD 257
SGG R RIA+ARAL +P IL+LDE T+ LD E + E L+ + ++VI+H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR-- 154
Query: 258 FLNGV--CTNIIHMQNKQ 273
L+ + II + + +
Sbjct: 155 -LSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 35/221 (15%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLD----SRVALVGPNGAGKSTLLKLMTG------ 415
+L+ ++ + K LD V + LVG +G+GKSTL + + G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALD-DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS 59
Query: 416 --------DLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-------YPGN 460
DL+ L +R+ I Q L+ M+ + I E
Sbjct: 60 GSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE-QIAEPLRIHGKLSKK 118
Query: 461 EEEKMRAAIGRFGLTGKAQVMPMK--NLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLD 517
E K + G+ +V+ LS GQR RV A LA P +L+ DEPT+ LD
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA-LNPKLLIADEPTSALD 177
Query: 518 ----IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
+ +D L + E L+ ++HD ++ ++A + V
Sbjct: 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV 218
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV--------RRHNHLRIAQ-- 434
+L F VD L+GPNGAGK+TL+ ++TG P +G V + RIA+
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82
Query: 435 ----------FHQH-LAEKLDMDM-------SALQYMIKEYPGNEEEKMRAAIGRFGLTG 476
F + E L++ + ++L ++ E ++ + GL
Sbjct: 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR---AEERRRIDELLATIGLGD 139
Query: 477 KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG-- 534
+ + LS GQ+ + L + P +LLLDEP + + AE L G
Sbjct: 140 ERDRLA-ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
Query: 535 LVLVSHDFRLINQVAHEIWVCENQAVTRWEGDI 567
+++V HD + ++A ++ V +V EG +
Sbjct: 199 ILVVEHDMGFVREIADKVTVLHEGSVLA-EGSL 230
|
Length = 249 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 37/211 (17%)
Query: 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH--NHLRIAQF-------- 435
D V VA++GP+GAGKSTLL L+ G P G + + +H
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77
Query: 436 -------HQHLAEKLDMDMSALQYMIKEYPG-----NEEEKMRAAIGRFGLTGKAQVMPM 483
H +A+ + + +S PG + EK+ AA + GL G + +P
Sbjct: 78 QENNLFAHLTVAQNIGLGLS---------PGLKLNAEQREKVEAAAAQVGLAGFLKRLP- 127
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVS 539
LS GQR RV A R+ +LLLDEP + LD E + +++ +E L++V+
Sbjct: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 540 HDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570
H ++A + +N + +G +
Sbjct: 188 HHPEDAARIADRVVFLDNGRIA-AQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 73 IRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
+ +E+LS + +G + + L +N G ++G +G GKSTLL I + S
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS--- 58
Query: 132 VISCDEERLKLEKEAEILGAQEDGG--GEQLERVYERLEALDA----------------- 172
I + + + ++ + G + + ERL L+
Sbjct: 59 -ILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI-ERLTVLENVLHGRLGYKPTWRSLLG 116
Query: 173 --STAEK-RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
S +K RA L +G ++ SGG + R+A+ARAL P ++L DEP
Sbjct: 117 RFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 230 LDLEACVWLEETLKKF---DRILVVIS-HSQDFLNGVCTNIIHMQNKQLKFY 277
LD + + + LK+ D I V+I+ H D I+ ++ ++ F
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 68/223 (30%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE-- 122
+ I ++S +F + D L++ G LLG +GCGK+TLL I GEI
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65
Query: 123 ASDMSSLEAVISCDEER------------------------LKLEKEAEILGAQEDGGGE 158
D++ + E+R LK+ K+ E
Sbjct: 66 GEDITDVPP-----EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKK--------LKKAE 112
Query: 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
RV E LE + R L SGG + R+ALARAL P
Sbjct: 113 IKARVEEALELVGLEGFADRKPHQL-----------------SGGQQQRVALARALVPEP 155
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQD 257
+LLLDEP + LD + + + LK+ R L V ++H Q+
Sbjct: 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198
|
Length = 352 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 40/196 (20%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVR------------RHNHLRI 432
G+DL+ + VA++GP+G+GK+TLL+ + P G +R I
Sbjct: 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80
Query: 433 AQFHQHLAE-----KLDMDMSALQYMI-------KEYPGNEEEKMRAAIGRFGLTGKAQV 480
Q QH+ L + L+ +I E + R + + GL GK
Sbjct: 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS 140
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE-------TIDSLAEALNEWDG 533
P + LS GQ+ RV A +P ++L DEPT+ LD E TI LA+
Sbjct: 141 YP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRT--- 196
Query: 534 GLVLVSHDFRLINQVA 549
+V+V+H+ VA
Sbjct: 197 -MVIVTHEMSFARDVA 211
|
Length = 250 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 60/220 (27%), Positives = 90/220 (40%), Gaps = 40/220 (18%)
Query: 361 KLPPP--VLQFVEVTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417
LP P L VT + + F + +A++GP+G+GKSTL +L+ G
Sbjct: 309 PLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 418 VPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFG---- 473
P G VR L A Q E + L ++ +PG E I RFG
Sbjct: 369 PPTSGSVR----LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN----IARFGENAD 420
Query: 474 ---------LTGKAQV---MPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDE 511
L G ++ +P LS GQR R+ A Y P +++LDE
Sbjct: 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480
Query: 512 PTNHLDIETIDSLAEALNEWD---GGLVLVSHDFRLINQV 548
P ++LD E +LA A+ +V+++H L+ V
Sbjct: 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 24/231 (10%)
Query: 75 IESLSVTFHGH----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSL 129
SL+ FH + + D E+ G G LG NG GKST L + G + +
Sbjct: 23 KGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82
Query: 130 EAVISCDEERLKLEKEAEILGAQEDGGGEQLE------RVYERLEAL---DASTAEKRAA 180
V D R + E I G G QL E L+ + +R
Sbjct: 83 --VNGKDPFRRREEYLRSI-GLVM-GQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD 138
Query: 181 EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE 240
+ L ++ R S G RMR LA AL P +L LDEPT LD+ A + E
Sbjct: 139 FLTEILDLEGFLK-WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197
Query: 241 TLKKFDR----ILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQT 287
LK+++ +++ +H D + +C ++ + QL + G Q +
Sbjct: 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-VFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 47/211 (22%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ ++++ +F +++ D L++ G LLG +GCGKSTLL I +E
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT----SGE 59
Query: 133 ISCDEERL-KLEKEAEILGAQEDGGGEQLER----------------VYE------RLEA 169
I D + L E +R VYE +L
Sbjct: 60 ILIDGRDVTDLPPE---------------KRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
+ + +KR E+ LG + +K SGG R R+ALARAL P + LLDEP ++
Sbjct: 105 VPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163
Query: 230 LDLEACVWLEETLKKFDRIL----VVISHSQ 256
LD + V + +KK L + ++H Q
Sbjct: 164 LDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
|
Length = 338 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 60/192 (31%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------------- 425
I K ++ V VA+VGP+G+GKSTLL ++ G P G VR
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 426 ---RHNHLRIAQFHQHLAEKLDMDMSALQ------YMIKEYPGNEEEKMRAAIGRFGLTG 476
RH FH L +++AL+ + E + +A + GL
Sbjct: 85 LRARHVGFVFQSFH------LIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK 138
Query: 477 KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE---ALNEWDG 533
+ P LS G++ RV A +P +L DEPT +LD T D +A+ ALN G
Sbjct: 139 RLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197
Query: 534 -GLVLVSHDFRL 544
LVLV+HD +L
Sbjct: 198 TTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-12
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 38/198 (19%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVP------LDGMVRRHN------HLRI 432
GV L R AL+G NGAGKSTL+K+++G P +DG + I
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85
Query: 433 AQFHQHLAEKLDMDMSA---LQYMIKEYPG-----NEEEKMRAAIGRFGLTGKAQVMPMK 484
A HQ L+ ++ ++ L G + R + R GL +
Sbjct: 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT-LVG 144
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-------IETIDSLAEALNEWDG-GLV 536
+LS QR V A +L+LDEPT L + I L G ++
Sbjct: 145 DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-----QGVAII 199
Query: 537 LVSHDFRLINQVAHEIWV 554
+SH + ++A I V
Sbjct: 200 YISHRLDEVFEIADRITV 217
|
Length = 500 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 32/199 (16%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152
E+ G R GL+G NG GKSTLL + I D ++ + + +LG
Sbjct: 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT----------VRGRVSSLLGL- 91
Query: 153 EDGGGEQ-----LERVYERLEALDASTAEKRA--AEIL--YGLG--FNKTMQAKKTRDFS 201
GGG E +Y L S E EI+ LG + + + +S
Sbjct: 92 --GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYS 144
Query: 202 GGWRMRIALARALFINPTILLLDEPTNHLDL---EACVWLEETLKKFDRILVVISHSQDF 258
G + R+A A A + P ILL+DE D E C L K + ++++SH
Sbjct: 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204
Query: 259 LNGVCTNIIHMQNKQLKFY 277
+ +C + ++ +++F
Sbjct: 205 IKRLCDRALVLEKGKIRFD 223
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 363 PPPVLQ-FVE---VTFGYTPDN--LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD 416
P P L +VE +TFGY+P LI +N + RVALVG +G+GKST+ KL+ G
Sbjct: 470 PSPRLSGYVELRNITFGYSPLEPPLI-ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528
Query: 417 LVPLDGMVRRHNHLRIAQFHQHLAEKLDM---DMSALQYMIKEYPGN---------EEEK 464
P G + R + LA + M D+ + +++ N + +
Sbjct: 529 YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD---NLTLWDPTIPDADL 585
Query: 465 MRAA--------IGRFGLTGKAQVMPM---KNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513
+RA I G NLS GQR R+ A R P +L+LDE T
Sbjct: 586 VRACKDAAIHDVITS--RPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT 643
Query: 514 NHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
+ LD ET + + L ++V+H I EI V E
Sbjct: 644 SALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLE 685
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-12
Identities = 72/234 (30%), Positives = 102/234 (43%), Gaps = 39/234 (16%)
Query: 357 VDVGKLPPPVLQ---FVE-VTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLK 411
VD K P L V+ VTF Y PD LI ++ ++ VA+VGP+G+GKSTLL+
Sbjct: 438 VDEAKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLR 497
Query: 412 LMTG-----------DLVPLDGM----VRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE 456
L+ G D L G+ VRR Q L M S + +
Sbjct: 498 LLLGFETPESGSVFYDGQDLAGLDVQAVRR-------QLGVVLQNGRLMSGSIFENIAGG 550
Query: 457 YPGNEEEKMRAAIGRFGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHM 506
P +E AA GL + MPM LS GQR R++ A R+P +
Sbjct: 551 APLTLDEAWEAA-RMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 507 LLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
LL DE T+ LD T ++E+L ++++H I + A I+V + V
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTI-RNADRIYVLDAGRV 662
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV--- 424
+F V F Y + K+++F + VA+VGP GAGK+TL+ L+ P G +
Sbjct: 4 EFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILID 63
Query: 425 -RRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGNEEEKMRAAIGRFGLTGKA 478
+ + L D I E P +E++ A G
Sbjct: 64 GIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 479 QVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
+P NLS G+R + A R P +L+LDE T+++D ET + EAL
Sbjct: 123 MKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 19/215 (8%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE-A 131
I +++L FHG ++ +LE+ G ++G +G GK+TLL I +E + ++
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 132 VISCDEERLKLEKEAEILGAQEDGG-----------GEQLERVYER---LEALDASTAEK 177
I+ D R +++ I ++ G LE + E ++ A
Sbjct: 64 DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA 123
Query: 178 RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW 237
RA E+L +G + R SGG + R+A+ARAL + P ++L DEPT+ LD E
Sbjct: 124 RARELLAKVGLAGKETSYPRR-LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182
Query: 238 LEETLKKF---DRILVVISHSQDFLNGVCTNIIHM 269
+ T+++ R +V+++H F V I M
Sbjct: 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217
|
Length = 250 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 33/233 (14%)
Query: 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE 122
+I +E+LS + G + D L + G+ L+G +G GKSTLL + GEI
Sbjct: 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 123 ASDMSSLE----------AVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDA 172
+ + + + +S + IL A+ D E++ ++ L+
Sbjct: 380 VNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEF 439
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
GL T+ + SGG R+ALARAL ++LLLDEPT HLD
Sbjct: 440 VPKPD-------GL---DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489
Query: 233 EACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
E + + L++ + ++VI+H + I+ + N +L G ++
Sbjct: 490 ETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL-VEQGTHEE 540
|
Length = 559 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-12
Identities = 82/279 (29%), Positives = 129/279 (46%), Gaps = 35/279 (12%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLT-AIGEIEASDMS-----S 128
+E+++ G L+ D ++ G + L+G NGCGK+TLL +G+++A
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTK 381
Query: 129 LEAVISCDEERLKLEKEAEIL-----GAQEDGGGEQLERVYERLEALDASTAEKRAAEIL 183
LE V D+ R +L+ E ++ G QE + V L+ D KRA
Sbjct: 382 LE-VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQ--DFLFHPKRA---- 434
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL-LDEPTNHLDLEACVWLEETL 242
M K SGG R R+ LAR LF+ P+ LL LDEPTN LD+E LEE L
Sbjct: 435 --------MTPVKA--LSGGERNRLLLAR-LFLKPSNLLILDEPTNDLDVETLELLEELL 483
Query: 243 KKFDRILVVISHSQDFL-NGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKW 301
+ ++++SH + F+ N V I N ++ Y G + Q +++ + K
Sbjct: 484 DSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQQQAQYLALKQPAVKK 543
Query: 302 EQEQIASMKEYIARFGHGSAKLARQAQSKEKTL-AKMER 339
++E A E + R S KL+ + Q + + L +E
Sbjct: 544 KEEAAAPKAETVKR---SSKKLSYKLQRELEQLPQLLED 579
|
Length = 635 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 7e-12
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 31/187 (16%)
Query: 383 YKNLDFGVDLD-----SRVALVGPNGAGKSTLLKLMTGDLVP------LDGMV----RRH 427
+ DF + +D + G +GAGKSTLL+ + G P L+G V R+
Sbjct: 8 KRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKK 67
Query: 428 NHL-----RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR----AAIGRFGLTGKA 478
+L +I Q A L ++ + + + R + GL
Sbjct: 68 INLPPQQRKIGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL 125
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGG 534
P + LS G++ RV A QP +LLLDEP + LD L L + +
Sbjct: 126 NRYPAQ-LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 535 LVLVSHD 541
++ V+HD
Sbjct: 185 VIFVTHD 191
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-12
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVIS 134
++++S F ++ D L + G+ Y ++G +G GKSTLL IG +E D V
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ---VYL 57
Query: 135 CDEERLKL-EKEAEILGAQE------DGGGEQLERVYERLE------ALDASTAEKRAAE 181
+E L K+A ++ + + E V E L+ L ++ E
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE---ACVWL 238
L +G N +K + SGG + R+ALARA+ P ++L DEPT LD + + L
Sbjct: 118 ALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 239 EETLKKFDRILVVISHSQ 256
L + +++++H
Sbjct: 177 LLELNDEGKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 9e-12
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN------HLR---IAQ 434
+++ V S VAL+GP+G+GKSTLL+++ G P G +R + H R I
Sbjct: 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGF 76
Query: 435 FHQHLAEKLDMDMS---ALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQ 490
QH A + + A I+++P + + ++ + L G P LS GQ
Sbjct: 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-NQLSGGQ 135
Query: 491 RSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLVSHDFRLIN 546
R RV A +P +LLLDEP LD + L L + + V V+HD
Sbjct: 136 RQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAM 195
Query: 547 QVAHEIWVCEN 557
+VA I V N
Sbjct: 196 EVADRIVVMSN 206
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 9e-12
Identities = 58/201 (28%), Positives = 86/201 (42%), Gaps = 56/201 (27%)
Query: 379 DNLI--YKNL----DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDGMVRR 426
++ Y +L D V+ RVA++GP+GAGKSTLL L+ G L P L+G
Sbjct: 5 TDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64
Query: 427 H------------------NHLRIAQ-----FHQHLAEKLDMDMSALQYMIKEYPGNEEE 463
+HL +AQ + L KL+ + E
Sbjct: 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLNAA--------------QRE 108
Query: 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----IE 519
K+ A + G+ +P + LS GQR RV A R+ +LLLDEP + LD E
Sbjct: 109 KLHAIARQMGIEDLLARLPGQ-LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
Query: 520 TIDSLAEALNEWDGGLVLVSH 540
+ +++ E L++VSH
Sbjct: 168 MLTLVSQVCQERQLTLLMVSH 188
|
Length = 232 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 9e-12
Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 27/214 (12%)
Query: 83 HGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--EASDMSSLEA 131
++ + L + G GLLG +GCGKSTL + G + D+ L+
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80
Query: 132 VISCDEERLKLEKEAEILGAQEDGG-------GEQLERVYERLEALDASTAEKRAAEILY 184
++R ++ +++ + + L +LD S + R AE+L
Sbjct: 81 -----KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLD 135
Query: 185 GLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEE 240
+G K R SGG RI +ARAL + P +++LDE ++LD+ L +
Sbjct: 136 MVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ F + I+H + C + M Q+
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 35/233 (15%)
Query: 73 IRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLE 130
I +++LS T+ GH + D LE+N G ++G +G GKSTLL ++ G ++ +
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE--- 60
Query: 131 AVISCDEERLKLEKEAEILGAQEDGG--GEQLERVYERLEALDA---------STA---- 175
++ + KL K E+ + D G +Q V RL L+ ST
Sbjct: 61 -ILFNGVQITKL-KGKELRKLRRDIGMIFQQFNLV-PRLSVLENVLLGRLGYTSTWRSLF 117
Query: 176 -------EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
+ +A + L +G ++ SGG + R+A+ARAL P I+L DEP
Sbjct: 118 GLFSKEDKAQALDALERVGILDKA-YQRASTLSGGQQQRVAIARALVQQPKIILADEPVA 176
Query: 229 HLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277
LD E+ + + LK ++V H D II ++ ++ F
Sbjct: 177 SLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229
|
Length = 258 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 40/191 (20%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDG--------------------MVRRHN----HL 430
A+VGP+G+GKSTLL L+ G P G M+ + N HL
Sbjct: 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85
Query: 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQ 490
+ Q + L + ++A + + A+ R GL G + +P LS G+
Sbjct: 86 TVEQ-NVGLGLSPGLKLTAED----------RQAIEVALARVGLAGLEKRLP-GELSGGE 133
Query: 491 RSRVVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHDFRLIN 546
R RV A + R +LLLDEP LD E +D + + E +++V+H
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193
Query: 547 QVAHEIWVCEN 557
++A + +N
Sbjct: 194 RLAQRVVFLDN 204
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-------LDGMVRRHNHLRIAQFHQHLA 440
D + L+GPNGAGK+TLL+ + G L+P + G I Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGASPGKGWRHIGYVPQRHE 59
Query: 441 EKLDMDMSALQYMIKEYPG----------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQ 490
D +S ++ G + +R A+ R GLT A P+ LS GQ
Sbjct: 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQ 118
Query: 491 RSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG---GLVLVSHD 541
R RV+ A +P +LLLDEP LD+ T + L E E G +++ +HD
Sbjct: 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441
I K + F + + ++GP+G+GKSTL +L+ G P G VR L A Q E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR----LDGADLRQWDRE 406
Query: 442 KLDMDMSALQYMIKEYPGN------------EEEKMRAA---------IGRF-------- 472
+L + L ++ + G + EK+ A I R
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW- 531
G G LS GQR R+ A Y P +++LDEP ++LD E +LA A+
Sbjct: 467 GEGGAT-------LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 532 -DGG-LVLVSHDFRLINQV 548
GG +V+++H + V
Sbjct: 520 ARGGTVVVIAHRPSALASV 538
|
Length = 580 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 35/142 (24%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK--EAEILG 150
+ G GL+G +GCGKSTL I L LE+ EIL
Sbjct: 34 FSIKEGETLGLVGESGCGKSTLGRLI---------------------LGLEEPTSGEILF 72
Query: 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210
+D + L +R E+L +G + + + SGG R RI +
Sbjct: 73 EGKD------------ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120
Query: 211 ARALFINPTILLLDEPTNHLDL 232
ARAL +NP +++ DEP + LD+
Sbjct: 121 ARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 64/242 (26%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I +E+L+V++ ++ D L + G L+G NG GKSTLL AI
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAI-------------- 50
Query: 133 ISCDEERLKLEK----EAEILGAQEDGGGEQLE----------------RVYE------- 165
L L K E +I G ++L V +
Sbjct: 51 -------LGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103
Query: 166 -RLEALDASTAEKRAA--EILYGLGFNKTMQAKKTRDF---SGGWRMRIALARALFINPT 219
+ + + E L +G M+ + R SGG + R+ LARAL NP
Sbjct: 104 GKKGWFRRLNKKDKEKVDEALERVG----MEDLRDRQIGELSGGQKQRVLLARALAQNPD 159
Query: 220 ILLLDEPTNHLD----LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLK 275
+LLLDEP +D E L+E L++ + +++++H + +I + N+ L
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLI 217
Query: 276 FY 277
Sbjct: 218 AS 219
|
Length = 254 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 28/220 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I I++LS +F +++ L + G ++G +G GKSTLL + +E D
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD----SGS 58
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD-------------ASTAEKRA 179
I+ D E + +K+ L ++ G Q ++ L L+ + A ++A
Sbjct: 59 ITVDGEDVGDKKDILKL-RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117
Query: 180 AEILYGLGFNKTMQAKKT---RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
E+L +G + K SGG + R+A+ARAL ++P ++L DEPT+ LD E
Sbjct: 118 LELLEKVG----LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG 173
Query: 237 WLEETLKKFDR---ILVVISHSQDFLNGVCTNIIHMQNKQ 273
+ + +K +++++H F V +I M +
Sbjct: 174 EVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 30/221 (13%)
Query: 78 LSVTFH----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI 133
L V L +D +L G+ G +G GKSTLL I +E D ++
Sbjct: 2 LCVDIEKRLPDFTLKIDFDLN---EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNG 58
Query: 134 SC-DEERLKLEKEAEILGAQEDGGGEQLER--------VYERLE--ALDASTAEKR--AA 180
+ + R K+ L Q+ G ++ V E L E R
Sbjct: 59 TVLFDSRKKI-----NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD 113
Query: 181 EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACV 236
E+L LG + + SGG + R+ALARAL P +LLLDEP + LD L+
Sbjct: 114 ELLDLLGLDHLLNRY-PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
Query: 237 WLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277
L++ K + ++ ++H + I+ M++ +L++
Sbjct: 173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 35/209 (16%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--------- 415
+++ ++ Y + K+++ ++ VA++GP+GAGKSTLL+ + G
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 416 -----DLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD------------MSALQYMIKEYP 458
+ L G R I Q + S + + +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 459 GNEEEKMRA--AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
+E+K +A A+ R G+ KA LS GQ+ RV A +QP ++L DEP L
Sbjct: 122 --KEDKAQALDALERVGILDKA-YQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 517 DIETIDSLAEAL---NEWDGGLVLVS-HD 541
D E+ + + L N+ DG V+V+ H
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQ 207
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH-QHLAEKLDMDMSALQYMIK 455
+++GPNGAGKSTLL +M L+ D + L + + LA+KL + +
Sbjct: 31 SIIGPNGAGKSTLLSMM-SRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89
Query: 456 ----------EYP-------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498
+P + + AI L + LS GQR R A
Sbjct: 90 LTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-LSDRYLDELSGGQRQRAFIAM 148
Query: 499 LAYRQPHMLLLDEPTNHLDI-------ETIDSLAEALNEWDGGLVLVSHDFRLINQVA 549
+ + +LLDEP N+LD+ + + LA+ L + +V+V HD IN +
Sbjct: 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK---TIVVVLHD---INFAS 200
|
Length = 252 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 83 HGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE---E 138
+G L+VD + G +GLLG NG GK+T L + + D S+ C E
Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL---CGEPVPS 73
Query: 139 RLKLEKEAEILGAQEDGGG------EQLERVYERLEALDASTAEKRAAEILYGLGFNKTM 192
R + ++ + Q D E L V+ R L A+ A +L
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENL-LVFGRYFGLSAAAARALVPPLLEFAKLENKA 132
Query: 193 QAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
AK + SGG + R+ LARAL +P +L+LDEPT LD +A
Sbjct: 133 DAK-VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
|
Length = 306 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 38/235 (16%)
Query: 68 PLSRDIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAI------- 118
+ + + ++S T+ G + L L G + +LG +G GKSTLL +
Sbjct: 332 TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 119 -GEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEK 177
G I + + I+ +E+ E + + G + + RL DAS E
Sbjct: 392 QGSITLNGVE-----IASLDEQALRETISVLTQRVHLFSGTLRDNL--RLANPDASDEEL 444
Query: 178 RAAEILYGL---------GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
AA GL G N + + R SGG R R+ALARAL + + LLDEPT
Sbjct: 445 WAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 229 HLD----LEACVWLEETLKKFDRILVVISHSQDFLNGV--CTNIIHMQNKQLKFY 277
LD + L E + + L++++H L G+ II + N ++
Sbjct: 504 GLDPITERQVLALLFEHAE--GKTLLMVTHR---LRGLERMDRIIVLDNGKIIEE 553
|
Length = 573 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 11/208 (5%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I I ++S F + D LE+ G LLG +G GKSTLL I +E D + +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RL 59
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQL---ERVYERLEALDASTAEKRA--AEILYGLG 187
D R+ Q + L + + LE A+ +A E+L +
Sbjct: 60 NGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQ 119
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEETLK 243
+ + SGG R R+ALARAL + P +LLLDEP LD E WL +
Sbjct: 120 LEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178
Query: 244 KFDRILVVISHSQDFLNGVCTNIIHMQN 271
+ V ++H Q+ V I+ M N
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSN 206
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV- 424
+L+ ++ + Y K ++F + VAL+GPNGAGKSTL G L P G V
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 425 --------RRHNHLRIAQ-----FH----QHLAEKLDMDMSALQYMIKEYPGNE-EEKMR 466
+ + L + + F Q A ++ D+ A + E E++++
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDV-AFGPLNLGLSKEEVEKRVK 119
Query: 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDS 523
A+ G+ G P +LS GQ+ RV A + +P +++LDEPT+ LD I
Sbjct: 120 EALKAVGMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK 178
Query: 524 LAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
L LN+ +++ +HD L+ A +++V
Sbjct: 179 LLYDLNKEGITIIISTHDVDLVPVYADKVYV 209
|
Length = 275 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL----EAVISCDEERLKLEKEAEI 148
L + G + G +GCGKSTLL + + + +L E V + E + ++
Sbjct: 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR--QQVSY 81
Query: 149 LGAQEDGGGEQLERVYERL----EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204
G+ V + L + + A ++L ++ K + SGG
Sbjct: 82 CAQTPALFGDT---VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGE 138
Query: 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQD 257
+ RIAL R L P ILLLDE T+ LD +EE + ++ + ++ I+H +D
Sbjct: 139 KQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
IR+ SL+ + G +D E GR G LG NG GKST + I D S++
Sbjct: 3 IRVSSLTKLY-GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 132 VISCDEERLKLEKEAE-ILGAQEDGGGEQLE---RVYERLEA----LDASTAEKRAAEIL 183
C E+ L+ KE + +G + L+ R Y + A + ++R E++
Sbjct: 62 ---CGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI 118
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK 243
+G Q KK S G+R R+ LA+AL +P +L+LDEPT LD V + +K
Sbjct: 119 ELVGLRPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177
Query: 244 KF--DRILVVISHSQDFLNGVCTNII 267
D+ +++ +H + +C +I
Sbjct: 178 NIGKDKTIILSTHIMQEVEAICDRVI 203
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 53/147 (36%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 98 GRRYGLLGLNGCGKSTL---LTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA--Q 152
GR LLG NG GKSTL LT + + +S V D R A + G Q
Sbjct: 27 GRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS----VAGHDLRRAPRAALARL-GVVFQ 81
Query: 153 E-----DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207
+ D Q R + L L + A R AE+L LG + K R+ +GG R R
Sbjct: 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDK-VRELNGGHRRR 140
Query: 208 IALARALFINPTILLLDEPTNHLDLEA 234
+ +ARAL P +LLLDEPT LD +
Sbjct: 141 VEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 89 VDS-ELELNYGRRYGLLGLNGCGKSTLLTAI-------GEI--EASDMSSLEAVISCDEE 138
VD L L G+ GL+G +G GKSTL A+ GEI + D+ L +E
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS-----RKE 357
Query: 139 RLKLEKEAEILGAQEDGG------------GEQLERVYERLEALDASTAEKRAAEILYGL 186
L + +++ Q+ G E L RV+E L A+ ++R E L +
Sbjct: 358 MRPLRRRMQVV-FQDPYGSLSPRMTVGQIIEEGL-RVHEP--KLSAAERDQRVIEALEEV 413
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL--EACV--WLEETL 242
G + + + +FSGG R RIA+ARAL + P ++LLDEPT+ LD +A V L +
Sbjct: 414 GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473
Query: 243 KKFDRILVVISHSQDFLNGVCTNIIHMQN 271
+K + ISH + +C +I M++
Sbjct: 474 QKHGLSYLFISHDLAVVRALCHRVIVMRD 502
|
Length = 534 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 33/204 (16%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
I +E++S + G + +D L++ G + LLG +GCGK+TLL I E
Sbjct: 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT------ 53
Query: 132 VISCDEERLKLE-KEAEILGAQEDGGGEQLER--------VYE------RLEALDASTAE 176
+ L+ K+ L + + V+E RL+ L + +
Sbjct: 54 -----SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK 108
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
+R AE L + + +K SGG + R+A+ARAL P +LLLDEP LDL+
Sbjct: 109 ERVAEALDLVQL-EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 237 WLEETLKKFDRIL----VVISHSQ 256
++ LK+ + L V ++H Q
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQ 191
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 4e-11
Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 38/257 (14%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS---L 129
IR+E L+ TF+ H + +L +++G LLG +G GKSTLL + + D S+ +
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 130 EAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD------------------ 171
E + + +L ++ A +Q V RL L+
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV-NRLSVLENVLIGALGSTPFWRTCFS 123
Query: 172 --ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
++RA + L +G ++ SGG + R+A+ARAL ++L DEP
Sbjct: 124 WFTREQKQRALQALTRVGMVH-FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIAS 182
Query: 230 LDLEACVWLEETLKKF---DRILVVIS-HSQDFLNGVCTNIIHMQNKQLKFYTGN----- 280
LD E+ + +TL+ D I VV++ H D+ C I+ ++ + FY G+
Sbjct: 183 LDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV-FYDGSSQQFD 241
Query: 281 ---FDQYVQTRSELEEN 294
FD ++ + +EEN
Sbjct: 242 NERFDHLYRSINRVEEN 258
|
Length = 262 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 36/209 (17%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
I + L+V + + D L++ G L+G +GCGKSTLL + + + E
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLER---------------VYERLEA------- 169
+ D + +I D +L R +Y+ +
Sbjct: 61 EVLLDGK--------DIYDLDVDV--LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI 110
Query: 170 LDASTAEKRAAEILYGLG-FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
++R E L +++ SGG + R+ LARAL P +LLLDEPT+
Sbjct: 111 KLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTS 170
Query: 229 HLDLEACVWLEETLKKF--DRILVVISHS 255
LD + +EE + + + +V+++H+
Sbjct: 171 ALDPISTAKIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 76/250 (30%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEA 123
I + ++ +F G +I+D +L++ G +LG +G GKSTLL I GEI
Sbjct: 9 IEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 124 ------------------------------SDMSSLEAVISCDEERLKLEKEAEILGAQE 153
S ++ E V E KL +
Sbjct: 68 DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES-------- 119
Query: 154 DGGGEQLERVYERLEA--LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211
E V +LE L + A+ +E+ SGG R R+ALA
Sbjct: 120 ----LIRELVLMKLELVGLRGAAADLYPSEL------------------SGGMRKRVALA 157
Query: 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQDFLNGVCTNII 267
RA+ ++P +L LDEPT+ LD + ++E +++ + L ++++H D L + +
Sbjct: 158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA 217
Query: 268 HMQNKQLKFY 277
+ + ++
Sbjct: 218 VLADGKVIAE 227
|
Length = 263 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I ++++S F V D L + G +G++G +G GKSTL+ I +E
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT--- 58
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGG----GEQL---ERVYE------RLEALDASTA 175
+ D L L E+ A+ G L V+E + + +
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI 117
Query: 176 EKRAAEILYGLGFNKTMQAKKTR---DFSGGWRMRIALARALFINPTILLLDEPTNHLD- 231
E+R E+L +G ++ K SGG + R+ +ARAL NP +LL DE T+ LD
Sbjct: 118 EERVLELLELVG----LEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Query: 232 ------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
L L + ++ +V+I+H + + +C + M+ ++
Sbjct: 174 ETTQSILAL---LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 46/250 (18%)
Query: 72 DIRIESLSVTFHGHDLIV-DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI- 121
I E++S ++ G ++ D + G + ++G +G GKSTL+ + GEI
Sbjct: 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 122 ----EASDMS--SLEAVISCDEERLKLEKE--AEILGAQEDGGGEQLERVYERLEALDAS 173
+ D+S SL I + L E + L DA+
Sbjct: 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI----------------ALGRPDAT 431
Query: 174 TAE-KRAAEILYGLGFNKTMQAK-------KTRDFSGGWRMRIALARALFINPTILLLDE 225
E + A ++ F + + + SGG R R+A+ARAL NP IL+LDE
Sbjct: 432 DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491
Query: 226 PTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
T+ LD E +++ LKK R ++I+H + II + N ++ G ++
Sbjct: 492 ATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER-GTHEE 549
Query: 284 YVQTRSELEE 293
+
Sbjct: 550 LLAKGGLYAR 559
|
Length = 567 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I++ +++ FH + + L + G+ YG++G +G GKSTL+ + +E
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE----RP 57
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTA------------- 175
+ D + L +E+ A+ Q+ +++ L + T
Sbjct: 58 TSGSVIVDGQDLTTLSNSELTKARR-----QIGMIFQHFNLLSSRTVFGNVALPLELDNT 112
Query: 176 -----EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
+++ E+L +G + + + SGG + R+A+ARAL NP +LL DE T+ L
Sbjct: 113 PKDEIKRKVTELLALVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 231 DLEACVWLEETLKKFDRIL----VVISHSQDFLNGVCTNIIHMQNKQL 274
D + E LK+ +R L ++I+H D + +C + + N +L
Sbjct: 172 DPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 8e-11
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 46/254 (18%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--- 121
I + L+ +F G ++ +L++ G ++G +G GKSTLL I GE+
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 122 --EASDMSSLEAVISCDEERLKLEKEAEIL---GAQEDGGGEQLERVYERLE-------A 169
+ S +S E +L + +L GA D V+E +
Sbjct: 61 GEDISGLSE--------AELYRLRRRMGMLFQSGALFDS-----LTVFENVAFPLREHTR 107
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
L + E L +G + + + SGG + R+ALARAL ++P +LL DEPT
Sbjct: 108 LSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 230 LD---LEACVWLEETLKK-FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285
LD L +LKK ++++H D + I + + ++ G ++
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEELR 225
Query: 286 QTRSELEENQMKQY 299
+ ++Q+
Sbjct: 226 ASDDP----LVRQF 235
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 22/175 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ + +S +F G + L + G + LLG NG GKSTL+ + + D
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGE 64
Query: 133 ISCDEERLKLE--KEAEILG----AQEDGGGEQLERVYE----------RLEALDASTAE 176
I D + + ++A G QE L V E R +D
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS-VAENIFLGREPTRRFGLIDRKAMR 123
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+RA E+L LG + D S R + +ARAL + +L+LDEPT L
Sbjct: 124 RRARELLARLGLDIDPDTL-VGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177
|
Length = 500 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 8e-11
Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 45/213 (21%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I + ++S F + D L++ G LLG +G GK+TLL I +E
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE---------- 52
Query: 133 ISCDEERLKLE-KEAEILGAQEDGGGEQLE------------------RVYERLEALDAS 173
D + ++A + QE G + RV R E +
Sbjct: 53 -RPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA 111
Query: 174 TAEKRAAEILYGLGFNKTMQAKKTRD-----FSGGWRMRIALARALFINPTILLLDEPTN 228
+ E+L K +Q D SGG R R+ALARAL + P +LLLDEP
Sbjct: 112 EIRAKVHELL------KLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 165
Query: 229 HLDL----EACVWLEETLKKFDRILVVISHSQD 257
LD E WL + V ++H Q+
Sbjct: 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-11
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 42/201 (20%)
Query: 386 LDFGVDLDSRVALVGPNGAGKSTLLK-LMT-----GDLVPLDGMVRRHNHLRIAQFHQ-- 437
L+F V +VAL+GP+G+GKST+L+ LMT + ++G H R
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 438 --HLA---EKLDM---------DMSALQ------YMIKEYPGNEEEKMRAA--IGRFGLT 475
HL K+ M + L ++ E EK RA + GL
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-RAMELLDMVGLA 137
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN------ 529
KA MP + LS GQ+ RV A +P ++L DE T+ LD E + E LN
Sbjct: 138 DKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG---EVLNVIRRLA 193
Query: 530 -EWDGGLVLVSHDFRLINQVA 549
E D ++LV+H+ + A
Sbjct: 194 SEHDLTMLLVTHEMGFAREFA 214
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 44/222 (19%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVP----- 419
++ ++ Y + + K++ + AL+GP+G GKSTLL+L+ DL+P
Sbjct: 1 IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 420 ----LDGM-----------VRRHNHLRIA---Q----FHQHLAEKLDMDMSALQYMIKEY 457
LDG +RR R+ Q F + + + + +KE
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRR----RVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEE 115
Query: 458 PGNEEEKMRAAIGRFGLTGK-AQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNH 515
+E++ A+ + L + + LS GQ+ R+ A LA +P +LLLDEPT+
Sbjct: 116 L---DERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN-EPEVLLLDEPTSA 171
Query: 516 LDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
LD I+ L L + + +V+V+H+ + +VA
Sbjct: 172 LDPISTAKIEELIAELKK-EYTIVIVTHNMQQAARVADRTAF 212
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 35/199 (17%)
Query: 361 KLPPPV---LQFVEVTFGY--TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415
LP P+ ++F +V F Y PD L+ V VALVGP+GAGKSTL +L+
Sbjct: 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388
Query: 416 DLVP------LDGMVRRHNHLRIAQFHQHLA----EKLDMDMSALQYMIKEYPGNEEEKM 465
P LDG+ R L A+ +A + + S ++ + P +E++
Sbjct: 389 FYDPQSGRILLDGVDLR--QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEV 446
Query: 466 RAA---------IGRF-----GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511
AA I G+ V LS GQR R+ A + +LLLDE
Sbjct: 447 EAAARAAHAHEFISALPEGYDTYLGERGVT----LSGGQRQRIAIARAILKDAPILLLDE 502
Query: 512 PTNHLDIETIDSLAEALNE 530
T+ LD E+ + +AL
Sbjct: 503 ATSALDAESEQLVQQALET 521
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 25/180 (13%)
Query: 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
+R+ +S + G ++ ++ G GLLG NG GKSTLL + D
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD----AG 56
Query: 132 VISCDEERL----KLEKEAEILGAQEDGGGEQLERV----------YERLEALDASTAEK 177
+ L + + + ++D V + L A D+
Sbjct: 57 TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAA 116
Query: 178 RAAEILYGLGFNKTMQAKKTRDF---SGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
L + RD SGG R R+ +ARAL P +LLLDEPTNHLD+ A
Sbjct: 117 VVDRALARTE----LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG---------MVRRHNHL-RIA 433
++ V +GPNGAGK+T +K++ G L+ D + L RI
Sbjct: 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 434 Q------FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLS 487
F+ +L + ++ + A I+ ++++ + GL A+ +K S
Sbjct: 76 ALIEAPGFYPNLTARENLRLLARLLGIR------KKRIDEVLDVVGLKDSAKK-KVKGFS 128
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLV-SHDFRL 544
G + R+ A P +L+LDEPTN LD + I L E + G VL+ SH
Sbjct: 129 LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188
Query: 545 INQVAHEIWVCENQAVTRWEG 565
I +VA + N+ EG
Sbjct: 189 IQKVA-DRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 73 IRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE 130
+ I ++S ++ + V + LEL G + LLG +G GKSTLL + D+ +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQ 56
Query: 131 AVISCDEERL-KLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFN 189
I+ D + LEK L + + +R Y F+
Sbjct: 57 GEITLDGVPVSDLEKALSSLISVLN------QRPYL----------------------FD 88
Query: 190 KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DR 247
T++ R FSGG R R+ALAR L + I+LLDEPT LD L + + D+
Sbjct: 89 TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK 148
Query: 248 ILVVISHSQDFLNGV--CTNIIHMQNKQLKF 276
L+ I+H L G+ I+ ++N ++
Sbjct: 149 TLIWITHH---LTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 60/210 (28%), Positives = 86/210 (40%), Gaps = 38/210 (18%)
Query: 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA 440
N+ V +S L+GPNGAGKSTLLK++TG L P G + H
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH--------PWT 65
Query: 441 EKLDMDMSALQYMIKEYP--GN----EEEKMRAA--------------IGRFGLTGKAQV 480
K D+ + +I+ P N E K+ I TGK +
Sbjct: 66 RK---DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA 122
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAEALNEWDGGLVL 537
K S G + R+ A P +L+LDEPTN LD I+ + L + E ++L
Sbjct: 123 ---KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179
Query: 538 VSHDFRLINQVAHEIWVCENQAVTRWEGDI 567
SH + Q+A I + V ++G I
Sbjct: 180 SSHILSEVQQLADHIGIISE-GVLGYQGKI 208
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 9/183 (4%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-----MSSLEAVISCDEERLKLEKEAE 147
++ G +G LG NG GK+T + + + ++ + V + R + +
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQ 73
Query: 148 ILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207
ED G + + RL L AE+RA E+L + +SGG R R
Sbjct: 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTYSGGMRRR 132
Query: 208 IALARALFINPTILLLDEPTNHLDLE--ACVW-LEETLKKFDRILVVISHSQDFLNGVCT 264
+ +A +L P +L LDEPT LD +W LK+ +++ +H + + +C
Sbjct: 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCD 192
Query: 265 NII 267
I
Sbjct: 193 RIA 195
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 35/214 (16%)
Query: 361 KLPPPVLQFVEVTFGYTPDNLIYKNL-DFGVDLDSR-------VALVGPNGAGKSTLLKL 412
+ PP E Y + K L DF ++++ + +VGPNG GK+T KL
Sbjct: 328 ERPPRDESERETLVEYPD---LTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKL 384
Query: 413 MTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN---EEEKMRAAI 469
+ G L P +G V L+I+ Q++ D + L I + G+ + E ++
Sbjct: 385 LAGVLKPDEGEVDP--ELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK--- 439
Query: 470 GRFGLTGKAQVM--PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE-------T 520
L +++ +K+LS G+ RV A R + LLDEP+ HLD+E
Sbjct: 440 -PLQLE---RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA 495
Query: 521 IDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
I +AE E + ++V HD +I+ ++ + V
Sbjct: 496 IRRIAE---EREATALVVDHDIYMIDYISDRLMV 526
|
Length = 590 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 362 LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD 421
+ +L+ E+ + Y+ K ++ + A++G NGAGKSTL + + G L P
Sbjct: 1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 422 GMVRRHN-----------HLRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNE-E 462
G + LR + +Q + + D+S + + P +E
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS-FGAVNLKLPEDEVR 119
Query: 463 EKMRAAIGRFGLTGKAQVMPMKN-----LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+++ A+ R G + +K+ LS GQ+ RV A + +P +L+LDEPT LD
Sbjct: 120 KRVDNALKRTG------IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 518 ----IETIDSLAEALNEWDGGLVLVSHDFRLI 545
E + L E E +++ +HD ++
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIV 205
|
Length = 283 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-10
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--LRIAQ-FHQHLAE-----KLDMDMS 448
L+GPNGAGK+TL++++ P G +R L+ Q + + + + +
Sbjct: 29 GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88
Query: 449 A---LQYM--IKEYP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502
L Y+ +K P + ++ + L +A+ + +LS G R RV A
Sbjct: 89 VREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVG 147
Query: 503 QPHMLLLDEPTNHLDIE 519
P +L++DEPT LD E
Sbjct: 148 DPSILIVDEPTAGLDPE 164
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 39/187 (20%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVP 419
+L+ ++ Y KN++ ++ VA++GP+GAGKSTLL+ + + +
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 420 LDG------------MVRRHNHLRIAQFHQH--LAEKLDM----------DMSALQYMIK 455
L+G +RR I QH L E+L + + ++
Sbjct: 61 LEGTDITKLRGKKLRKLRRR----IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLG 116
Query: 456 EYPGNEEEKMRA--AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513
+ EE+K RA A+ R GL KA LS GQ+ RV A +QP ++L DEP
Sbjct: 117 RFS--EEDKERALSALERVGLADKAYQR-ADQLSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 514 NHLDIET 520
LD +T
Sbjct: 174 ASLDPKT 180
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL----EAVISCDEERLKLEKEAEIL 149
L G+ ++G +GCGKSTL + IE L + ++ D E KL ++ +
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 150 GAQEDGG--------GEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKK-T 197
Q G G+ LE E L +L A+ ++A ++ +G + +
Sbjct: 97 VFQNPYGSLNPRKKVGQILE---EPLLINTSLSAAERREKALAMMAKVGL-RPEHYDRYP 152
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
FSGG R RIA+ARAL ++P +++ DEP + LD+
Sbjct: 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
+ + ++S T+ G V D L + G L+G +GCGKSTLL I +E
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT--- 57
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGGGEQL---ERVYE------RLEALDASTAEKRA 179
+ D E + Q+D L V + L+ + + A +RA
Sbjct: 58 -SGEVLVDGEPVTGPGPDRGYVFQQDA----LLPWLTVLDNVALGLELQGVPKAEARERA 112
Query: 180 AEIL--YGL-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
E+L GL GF SGG R R+ALARAL ++P +LLLDEP + LD
Sbjct: 113 EELLELVGLSGFEN----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET---LKKFDRILVVISHSQD 257
SGG R RIALARAL+ +P +++LDEP ++LD E L LK +VVI+H
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
Query: 258 FLNGVCTNIIHMQNKQLKFY 277
L V I+ +Q+ ++ +
Sbjct: 516 LLGCV-DKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 4e-10
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 30/216 (13%)
Query: 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
P L+ +T + P + ++ V AL+G NGAGKSTL+K++ G P G
Sbjct: 2 EPALEMRGITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 424 VR-----------RH-NHLRIAQFHQH--------LAEKLDMDMSALQYMIKEYPGNEEE 463
+R R L I HQH +AE + + + + + +
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ-ARA 119
Query: 464 KMRAAIGRFGLT--GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
+++ R+GL A+V +LS G++ RV YR +L+LDEPT L +
Sbjct: 120 RIKELSERYGLPVDPDAKVA---DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 522 DSLAEALN---EWDGGLVLVSHDFRLINQVAHEIWV 554
D L E L ++ ++H + + +A + V
Sbjct: 177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTV 212
|
Length = 501 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 56/202 (27%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 363 PPPVLQFVEVT--FGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL 420
P P L+ V+ FG D ++ + V L+GP+G GK+TLL+++ G P
Sbjct: 2 PKPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 421 DGMV----RRHNHLRIAQFH-----QHLAEKLDMDMSALQY------MIKEYPGNE-EEK 464
G + + + Q A L M+ + + K+ E + +
Sbjct: 59 SGEILLDGEDITDVPPEKRPIGMVFQSYA--LFPHMTVEENVAFGLKVRKKLKKAEIKAR 116
Query: 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDS 523
+ A+ GL G A P + LS GQ+ RV A L P +LLLDEP + LD + +
Sbjct: 117 VEEALELVGLEGFADRKPHQ-LSGGQQQRVALARALVPE-PKVLLLDEPLSALDAKLREQ 174
Query: 524 LAEALNEWDGGL----VLVSHD 541
+ + L E L V V+HD
Sbjct: 175 MRKELKELQRELGITFVYVTHD 196
|
Length = 352 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 56/187 (29%), Positives = 76/187 (40%), Gaps = 36/187 (19%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RHNHL--RIAQFHQHLAEKLD 444
+ LVGPNGAGKSTLL M G L+P G ++ L A Q
Sbjct: 25 LHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFA 83
Query: 445 MDMSALQY-MIKEYPGNEEEKMRAAI----GRFGLTGKAQVMPMKNLSDG--QRSRVVFA 497
M + QY + + E + +A+ GL K + LS G QR R+
Sbjct: 84 MPV--FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAV 140
Query: 498 WLAYRQ------PH--MLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLIN 546
L Q P +LLLDEP N LD+ +D L L + +V+ SHD
Sbjct: 141 VL---QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL 197
Query: 547 QVAHEIW 553
+ A +W
Sbjct: 198 RHADRVW 204
|
Length = 248 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 48/234 (20%)
Query: 73 IRIESLSVTFHGHDL-------IVDSELELNYGRRYGLLGLNGCGKSTLLTAI------- 118
+ +E LS TF H + + L +N G L G +G GKSTLL ++
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 119 -GEI------EASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD 171
G I D++ E L++ + + G Q RV R+ AL+
Sbjct: 62 SGRILVRHEGAWVDLAQASP-----REVLEVRR-------KTIGYVSQFLRVIPRVSALE 109
Query: 172 AST------------AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219
A RA E+L L + + FSGG + R+ +AR +
Sbjct: 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYP 169
Query: 220 ILLLDEPTNHLDL---EACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQ 270
ILLLDEPT LD + V L K L+ I H ++ V ++ +
Sbjct: 170 ILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 5e-10
Identities = 45/190 (23%), Positives = 63/190 (33%), Gaps = 77/190 (40%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVP------LDGM------VRRHNHLRI 432
GV L R AL+G NGAGKSTL+K+++G P +DG R I
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77
Query: 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492
A +Q LS G+R
Sbjct: 78 AMVYQ------------------------------------------------LSVGERQ 89
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLD-------IETIDSLAEALNEWDG-GLVLVSHDFRL 544
V A R +L+LDEPT L + I L G ++ +SH
Sbjct: 90 MVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-----GVAVIFISHRLDE 144
Query: 545 INQVAHEIWV 554
+ ++A + V
Sbjct: 145 VFEIADRVTV 154
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 38/210 (18%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA- 131
I ++++SV +G ++ D ++N G + ++G NG GK+TLL+ + +
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLL----TGEHPPSSGD 87
Query: 132 VISCDEERLKLEKEAEILGAQEDGG---GEQLERVYERLEALDASTAEKRAAEILYGLGF 188
V K E E+ ++ G E ER R D + A+ +Y
Sbjct: 88 VTLLGRRFGKGETIFEL---RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDL 144
Query: 189 NKTMQAK-------------KTRDF---SGGWRMRIALARALFINPTILLLDEPTNHLDL 232
A R F S G + R+ +ARAL +P +L+LDEP LDL
Sbjct: 145 TAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDL 204
Query: 233 EACVWLEETLKKFDRI--------LVVISH 254
A E+ L + + + L+ ++H
Sbjct: 205 IA---REQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-10
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 20/195 (10%)
Query: 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV----RRHNHLRI 432
D I N+ V +A+ GP+G GKSTLLK++ + P G + + L+
Sbjct: 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP 72
Query: 433 AQFHQHLAEKLDMDMSAL------QYMIKEYPGNEEEKMRAA----IGRFGLTGKAQVMP 482
+ Q ++ AL +I + RAA + RF L
Sbjct: 73 EAYRQQVS--YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKN 130
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLV 538
+ LS G++ R+ P +LLLDE T+ LD ++ E ++ + + ++ +
Sbjct: 131 ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWI 190
Query: 539 SHDFRLINQVAHEIW 553
+HD + A ++
Sbjct: 191 THDKDQAIRHADKVI 205
|
Length = 223 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 46/212 (21%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LD---------------GM 423
N++ V V+L+GPNGAGK+T+ +TG P L G+
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 424 VRRHNHLR------------IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKM-RAA-- 468
VR H+R +AQ HQ L L S L + E E + RAA
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQ-HQQLKTGL---FSGL-LKTPAFRRAESEALDRAATW 137
Query: 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IETID---SL 524
+ R GL A NL+ GQ+ R+ A QP +L+LDEP L+ ET + +
Sbjct: 138 LERVGLLEHAN-RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI 196
Query: 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
AE NE + ++L+ HD +L+ ++ I+V
Sbjct: 197 AELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228
|
Length = 255 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-------RRHNHLRIAQ--- 434
+L VD ++GPNGAGK+T++ ++TG P +G V +IA+
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79
Query: 435 ---------FHQH-LAEKLDMDMSA----LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV 480
F + E L++ + + E++++ + GL +A
Sbjct: 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR 139
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG--LVLV 538
LS GQ+ + L + P +LLLDEP + E + AE L G +V+V
Sbjct: 140 -LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVV 198
Query: 539 SHDFRLINQVA 549
HD + +A
Sbjct: 199 EHDMEFVRSIA 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 39/231 (16%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMS 127
+ +++LSV+F +V EL G G++G +G GKS L AI G + +
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 128 SLEAVIS-CDEERLKLEKEA--EILGA------QEDGG--------GEQL-ERVYERLEA 169
+ I ++ L L ++ +I G Q+ G+Q+ E + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRD----FSGGWRMRIALARALFINPTILLLDE 225
L A++RA E+L +G ++ + SGG R R+ +A AL +NP +L+ DE
Sbjct: 122 LSKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE 179
Query: 226 PTNHLD-------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHM 269
PT LD L+ L+E ++ L++I+H + + + M
Sbjct: 180 PTTALDVTVQAQILDL---LKELQREKGTALILITHDLGVVAEIADRVAVM 227
|
Length = 316 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-- 424
++F EV++ + I K++ + + +VGP+GAGKSTL+KL+ + P +G +
Sbjct: 4 IEFKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 425 -------------RRHNHLRIAQFHQ--HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAI 469
RR +I Q HL E D M+K + E + +
Sbjct: 63 DGVDIKTIDVIDLRR----KIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV 118
Query: 470 GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAE 526
GL + +KNLS G+ RV A P +LLLDEPT+ LD E I+ L
Sbjct: 119 ---GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 527 AL-NEWDGGLVLVSHD 541
L N+ + ++ ++H+
Sbjct: 176 KLKNKMNLTVIWITHN 191
|
Length = 241 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 8e-10
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL---KKFDRILVVISHSQD 257
SGG R RIALARAL+ +P +++LDEP ++LD E L + K +VVI+H
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 258 FLNGVCTNIIHMQNKQLKFY 277
L I+ +Q+ ++ +
Sbjct: 534 AL-ASVDKILVLQDGRIAAF 552
|
Length = 580 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 8e-10
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 46/233 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ +E L + H+++ L+ N G ++G +G GKST L I +E S+
Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI--R 64
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERL--------------------EA--- 169
++ +E RLK +K+ ++ A + QL+R+ RL EA
Sbjct: 65 VNGEEIRLKRDKDGQLKPADK----RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH 120
Query: 170 -LDASTAEKRAAEILYGLGFNKTMQAKKTRDF----SGGWRMRIALARALFINPTILLLD 224
L S AE Y K A+K + SGG + R+A+ARAL + P ++L D
Sbjct: 121 VLGVSKAEAIERAEKY---LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD 177
Query: 225 EPTNHLDLEACVWLEETLK------KFDRILVVISHSQDFLNGVCTNIIHMQN 271
EPT+ LD E + E LK + R +VV++H F V +++I +
Sbjct: 178 EPTSALDPEL---VGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227
|
Length = 256 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 8e-10
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------ 424
++T GY + +NL + A++GPNG GKSTLL+ ++ + P G V
Sbjct: 12 QLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 425 -----RRHNHLRIAQFHQHLAEKLDMDMSAL--------QYMIKEYPGNEEEKMRAAIGR 471
+ RI Q+ D+ + L Q + + +EE + A+
Sbjct: 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA 130
Query: 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530
G+T A + LS GQR R A + ++ ++LLDEPT LDI L E L+E
Sbjct: 131 TGITHLAD-QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188
|
Length = 265 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLD--LEACVWLEETLKKFD--RILVVISH 254
SGG R R+ALARAL P ILLLDE T+ LD EA + + L + R +++I+H
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII--LQNLLQILQGRTVIIIAH 666
|
Length = 709 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHS 255
R SGG R +ALARAL +P ILLLDEPT+ +D + ++ LK++ + LV+++H
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659
Query: 256 QDFLNGVCTNIIHMQNKQL 274
L+ + II M N ++
Sbjct: 660 TSLLD-LVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + RIA+ARAL NP ILLLDE T+ LD E+ ++E L + R +VI+H
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 22/176 (12%)
Query: 358 DVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417
+ P + VE +G D L+ L F V L+GPNGAGK+T L+++ G
Sbjct: 1 GPMSVAPIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57
Query: 418 VPLDGMVR----------RHNHLRIAQFHQHLAEKLDMDMSALQYMI--KEYPGNEEEKM 465
P G + RH R+ Q + LD D + + ++ Y G
Sbjct: 58 HPDAGSISLCGEPVPSRARHARQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 466 RAAIGRF----GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
RA + L KA + LS G + R+ A P +L+LDEPT LD
Sbjct: 116 RALVPPLLEFAKLENKADA-KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+++ ++ F Y K L + S+ AL+GPNGAGKSTLL + G +P G V+
Sbjct: 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 426 RHNHLRIAQFHQHLAEKL-----DMDMSALQYMIKE----YPGNE-------EEKMRAAI 469
A+ + + K+ D D + + P N E ++ A+
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 470 GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN 529
+ P +LS GQ+ RV A + P +++LDEP +LD ++L E L+
Sbjct: 124 KAVRMWDFRDKPPY-HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182
Query: 530 EW--DGGLVLVS-HDFRLINQVAHEIWVCENQAVTRWEGD 566
G V+V+ HD L + A ++ V + EGD
Sbjct: 183 RLHNQGKTVIVATHDVDLAAEWADQVIVL-KEGRVLAEGD 221
|
Length = 274 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 53/220 (24%)
Query: 365 PVLQFVEVTFGYTPDNLIY--KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
+++ ++F Y PD Y K++ F V VA+VG NG+GKSTL KL+ G L+P G
Sbjct: 4 EIIRVEHISFRY-PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 423 MVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN---------------------- 460
+ L+E+ D+ M+ + P N
Sbjct: 63 TIT--------VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPR 114
Query: 461 EE--EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD- 517
EE E++ A+ + G+ P + LS GQ+ RV A + QP +++LDE T+ LD
Sbjct: 115 EEMVERVDQALRQVGMEDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 518 ------IETIDSLAEALNEWDGGLVLVS--HDFRLINQVA 549
+ET+ L E G+ ++S HD +++ A
Sbjct: 174 RGRREVLETVRQLKE-----QKGITVLSITHD---LDEAA 205
|
Length = 279 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 43/180 (23%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK------------------ 144
LLG +GCGK+TLL I +E ++ D RL +K
Sbjct: 35 LLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93
Query: 145 EAEI---LGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFS 201
I L + G E ERV E L+ + +E+ K S
Sbjct: 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------------KYPGQLS 136
Query: 202 GGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQD 257
GG + R+ALARAL +P +LLLDEP + LD L +++ R L ++++H Q+
Sbjct: 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
I E++S + + D L + G L+G +G GK+T L I IE +
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT-----SG 56
Query: 132 VISCDEERLKLEKEAEI---LG--AQEDGGGEQLERVYE------RLEALDASTAEKRAA 180
I D E + E+ +G Q+ G L V E +L D +KRA
Sbjct: 57 EILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL-TVAENIATVPKLLGWDKERIKKRAD 115
Query: 181 EIL--YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
E+L GL ++ + + SGG + R+ +ARAL +P ILL+DEP LD
Sbjct: 116 ELLDLVGLDPSEYAD-RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR------------RHNHLR 431
KN+ V+ ++GP G+GKS LL+ + G + P G + + +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD--- 72
Query: 432 IAQFHQHLAEKLDMDM-SALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK--NLSD 488
I+ Q+ A M + + Y +K+ +++E R + + G ++ K LS
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSG 132
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVL-VSHDFRL 544
G++ RV A P +LLLDEP + LD+ T + L E L + G VL V+HDF
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE- 191
Query: 545 INQVAHEIWVCENQAVTRWEGDIMDF 570
E W ++ G ++
Sbjct: 192 ------EAWALADKVAIMLNGKLIQV 211
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 18/197 (9%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS--SLE 130
+++E+LS + L S LE+ G + +LG G GKS LL I D L
Sbjct: 1 LKVENLSKDWKEFKLKNVS-LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 131 AVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRAAEILY 184
D L EK Q + VY+ + +D E++ EI
Sbjct: 60 GK---DITNLPPEKRDISYVPQNYALFPHMT-VYKNIAYGLKKRKVDKKEIERKVLEIAE 115
Query: 185 GLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244
LG + + K SGG + R+A+ARAL +NP ILLLDEP + LD+ L E LKK
Sbjct: 116 MLGIDHLLNRKPET-LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK 174
Query: 245 FDRILVV----ISHSQD 257
+ V ++H +
Sbjct: 175 IRKEFGVTVLHVTHDFE 191
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (143), Expect = 1e-09
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 35/222 (15%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLD----SRVALVGPNGAGKSTLLKLMTGDLVPLD 421
+++F +V + Y P++ F +DL+ S AL+G G+GKSTLL+ + G L P +
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 422 GMVR----------RHNHLR--------IAQF--HQHLAEKLDMDMSALQYMIKEYPGNE 461
G V + ++ + QF Q E + D++ + + + +
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVA---FGPQNFGIPK 117
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKN---LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD- 517
E+ + A + + G A K+ LS GQ RV A + +P +L+LDEPT LD
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 518 ---IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
IE + L E++++ +VLV+H + A +++ E
Sbjct: 178 KARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLE 218
|
Length = 288 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 35/211 (16%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-- 424
L+ V + + K+++ ++ V L+GP+G GKSTLL+++ G P G +
Sbjct: 4 LELKNVRKSF-GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 425 --RRHNHL-----RIAQ-FHQ-----HLAEKLDMDMSALQYM-----IKEYPGNE-EEKM 465
R L IA F H M+ + + ++ P E ++++
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNYALYPH--------MTVYENIAFGLKLRGVPKAEIDKRV 114
Query: 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA 525
+ GL P LS GQR RV A R+P + LLDEP ++LD + +
Sbjct: 115 KEVAKLLGLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173
Query: 526 EALNEWDGGL----VLVSHDFRLINQVAHEI 552
+ + L + V+HD +A I
Sbjct: 174 SEIKKLHERLGTTTIYVTHDQVEAMTLADRI 204
|
Length = 338 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 34/182 (18%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMS-ALQYMI 454
+ ++GPNG GK+T +K++ G L P +G + E +S QY+
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDI----------------EIELDTVSYKPQYIK 71
Query: 455 KEYPGNEEEKMRAAIGRFGLTG--KAQVM-PMK----------NLSDGQRSRVVFAWLAY 501
+Y G + + + F K ++ P++ LS G+ RV A
Sbjct: 72 ADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS 131
Query: 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCEN 557
+ + LLDEP+ +LD+E ++ + + + +V HD +I+ +A + V E
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEG 191
Query: 558 QA 559
+
Sbjct: 192 EP 193
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 47/175 (26%), Positives = 65/175 (37%), Gaps = 48/175 (27%)
Query: 98 GRRYGLLGLNGCGKSTLLTAI--------------GEIEASDMSSLEA--------VISC 135
G LLG NG GKSTLL + GE L
Sbjct: 18 GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 136 DEERLKLEKEAEI------LGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFN 189
D++ + + ++ LG E E RV E L A+ AS +R
Sbjct: 78 DDQLFAADVDQDVAFGPLNLGLSEA---EVERRVREALTAVGASGLRERP---------- 124
Query: 190 KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244
T SGG + R+A+A A+ + P +LLLDEPT LD + L++
Sbjct: 125 -------THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVR------RHNHLRIAQFHQHLAEK--LDMDM 447
V +GPNGAGKST +K++TG L P G V+ N + + +L E L +DM
Sbjct: 31 VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 448 SALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501
+Y+ I G ++++ I GL + Q + LS G R RV A
Sbjct: 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALI 149
Query: 502 RQPHMLLLDEPTNHLD 517
P +L+LDEPT LD
Sbjct: 150 HDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 33/191 (17%)
Query: 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE 130
+I + +S + G +++ D ++ G Y ++G +G GKSTL+ I + + E
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL----IDPTE 57
Query: 131 AVISCDEERLKLEKEAEILGAQEDGGGEQLER----VYERLEALDASTAE---------- 176
I D +K +++ L R V+++ + + +
Sbjct: 58 GSILIDGVDIK---TIDVI---------DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKG 105
Query: 177 KRAAEILYGL---GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE 233
++ ++ Y L G NK + ++ SGG R+++AR L NP +LLLDEPT+ LD
Sbjct: 106 EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165
Query: 234 ACVWLEETLKK 244
+ +EE + K
Sbjct: 166 STEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 19/176 (10%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA-------- 433
+++ + V ++GP+G GK+TLL L+ G + P G ++ N RI
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL-NGRRIEGPGAERGV 78
Query: 434 --QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA--IGRFGLTGKAQVMPMKNLSDG 489
Q L +D A ++ + + A + GL G + LS G
Sbjct: 79 VFQNEALLPWLNVIDNVAFGLQLRGIE-KAQRREIAHQMLALVGLEGAEHKYIWQ-LSGG 136
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE-W---DGGLVLVSHD 541
R RV A +P +LLLDEP LD T + + E L + W ++L++HD
Sbjct: 137 MRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192
|
Length = 259 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 377 TPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQ 434
TPD + L+F V R+ + G +GAGK++LL+ + G L P G + +
Sbjct: 402 TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRISMPADSALLF 460
Query: 435 FHQHLAEKLDMDMSALQYMI----KE---YPGNEE----EKMRAAIGRFGLTGKAQVMPM 483
Q Y+ +E YP ++ A + + GL A+ +
Sbjct: 461 LPQR------------PYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 484 KN-----LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLV 536
++ LS G++ R+ FA L +P + LDE T+ LD ET D L + L E D ++
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVI 568
Query: 537 LVSHDFRLINQVAHEI 552
V H L N + ++
Sbjct: 569 SVGHRPTLWNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 33/196 (16%)
Query: 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP---------LD 421
V+ P + + N++F + V L+GP+G GKSTLL M G L L+
Sbjct: 7 NVSLR-LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65
Query: 422 GMVRRHNHLRIAQFH-------QHLAEKLDMDMSALQYMIKEYPGNEEEKM-RAAIGRFG 473
+R + L AQ L L + + L + GN AA+ R G
Sbjct: 66 E--QRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSG 123
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-- 531
L G P LS GQR+RV QP LLLDEP + LD+ +L + +W
Sbjct: 124 LDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV----ALRDQFRQWVF 178
Query: 532 ----DGGL--VLVSHD 541
G+ V V+HD
Sbjct: 179 SEVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 49/205 (23%), Positives = 77/205 (37%), Gaps = 58/205 (28%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAI----------GEI--EASDMSSLEAVISCDEERL 140
L + G + ++G NG GKSTL I GEI + D+ L +ER
Sbjct: 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP-----DERA 79
Query: 141 KL------EKEAEILG------------AQEDGGGEQLERVYERLEALDASTAEKRAAEI 182
+ + EI G A+ G E K E
Sbjct: 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE-------------FIKELKEK 126
Query: 183 LYGLGFNKTMQAKKTRD----FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL 238
LG ++ R FSGG + R + + L + P + +LDEP + LD++A +
Sbjct: 127 AELLGLDEEFL---ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183
Query: 239 EETLKKF---DRILVVISHSQDFLN 260
E + R +++I+H Q L+
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLD 208
|
Length = 251 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F V F Y PD +I N+ + V +VG +G+GKSTL KL+ VP +G V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 426 RHNH---------LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTG 476
H LR Q L E + + S + PG E++ A G
Sbjct: 61 VDGHDLALADPAWLR-RQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 477 KAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
+P LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 24/178 (13%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443
+++ F + L+G NGAGK+TLL+++ L+P G V + + + + K+
Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI-DGVDTVRDPSFVRRKI 77
Query: 444 DM---------DMSA---LQYMIKEYP-GNEEEKMRAA--IGRFGL--TGKAQVMPMKNL 486
+ ++A L+Y + +E K R A R L +V
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG---EF 134
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE---ALNEWDGGLVLVSHD 541
S G + +V A P +L+LDEPT+ LDI T + L ++ SH
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
|
Length = 245 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKST---LLTAIGEIEASD--MS 127
I +E+L + + + + G +GLLG NG GK+T +LT + + + ++
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 128 SLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEIL--YG 185
+ V E R ++ + L ++ G + ++ RL + + +R E+L G
Sbjct: 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVG 120
Query: 186 LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA--CVW--LEET 241
L K +SGG R R+ +AR+L P +L LDEPT LD + VW +E+
Sbjct: 121 LLEAADRLVKT---YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177
Query: 242 LKKFDRILVVISH 254
++F +++ +H
Sbjct: 178 KEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T +K + SGG R RIA+ARAL NP IL+ DE T+ LD E+ + +++
Sbjct: 582 GYN-TEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640
Query: 246 -DRILVVISHSQDFLNGV--CTNIIHMQNKQL 274
R +++I+H L+ V C II ++ Q+
Sbjct: 641 RGRTVIIIAHR---LSTVRACDRIIVLEKGQI 669
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 30/201 (14%)
Query: 357 VDVGKLPPP----VLQFVEVTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLK 411
D G ++F VTF Y + ++ ++ VALVG +G+GKSTL+
Sbjct: 317 KDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVN 376
Query: 412 LMT-------GDLVPLDGMVRRHNHLR-----IAQFHQHLAEKLDMDMSALQYMIKEYPG 459
L+ G ++ LDG L +A Q + L D A
Sbjct: 377 LIPRFYEPDSGQIL-LDGHDLADYTLASLRRQVALVSQDVV--LFNDTIANNIAYGRTEQ 433
Query: 460 NEEEKMRAAIGRFGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLL 509
+ ++ A+ +P+ LS GQR R+ A + +L+L
Sbjct: 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493
Query: 510 DEPTNHLDIETIDSLAEALNE 530
DE T+ LD E+ + AL
Sbjct: 494 DEATSALDNESERLVQAALER 514
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 4e-09
Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 66/222 (29%)
Query: 72 DIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI 121
+ + ++S T+ V L++ G + LLG GCGKSTLL + GEI
Sbjct: 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397
Query: 122 -------EASDMSSLEAVISCDEER-----------LKLEKEAEILGAQEDGGGEQLERV 163
++L IS +R L L A + E L V
Sbjct: 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL--------AAPNASDEALIEV 449
Query: 164 YERL---------EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214
+++ + L+A E G R SGG + R+ +ARAL
Sbjct: 450 LQQVGLEKLLEDDKGLNAWLGE---------GG----------RQLSGGEQRRLGIARAL 490
Query: 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
+ +LLLDEPT LD E + E L + ++ +++I+H
Sbjct: 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532
|
Length = 574 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 57/239 (23%), Positives = 85/239 (35%), Gaps = 62/239 (25%)
Query: 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE--- 122
+ LS F G + D LE+ G GL+G NG GK+TL I G +
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 123 -------------------------ASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGG 157
++ LE V +GA G
Sbjct: 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVA---------------VGAHARLGL 110
Query: 158 EQLERVYERLEALDASTAEKRAAEIL--YGLGFNKTMQAKKTRDFSGGWRMRIALARALF 215
L + A +RA E+L GLG A + S G + R+ +ARAL
Sbjct: 111 SGLLGRPRARKEERE--ARERARELLEFVGLGELADRPA---GNLSYGQQRRLEIARALA 165
Query: 216 INPTILLLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQ 270
P +LLLDEP L+ E L E +++ +++I H + G+ I+ +
Sbjct: 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN 224
|
Length = 250 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM--------------V 424
D + + F V L+GPNGAGK+T +K++T L P G V
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 425 RRHNHLRIAQFHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKA 478
RR RI Q L+ +D +++ + + + PG E E++ + GL A
Sbjct: 72 RR----RIGIVFQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA 125
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
+K S G R R+ A +P +L LDEPT LD +T + E
Sbjct: 126 D-RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 32/224 (14%)
Query: 75 IESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKST-------LLTAIGEIEA 123
++ L VTF D V D L G G++G +G GKS LL A G I
Sbjct: 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74
Query: 124 SDMSSLEAVISCDEERLKLEKEAEILGAQEDGG---------GEQLERVYERLEALDAST 174
S + +++ E+ L + +I +D GEQL V + + +
Sbjct: 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 175 AEKRAAEILYGLGFNKTMQAKK-----TRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
A + + +L + K +A+K +FSGG R R+ +A AL P +L+ DEPT
Sbjct: 135 AFEESVRMLDAV---KMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 191
Query: 230 LDL----EACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHM 269
LD+ + L E ++F+ +++I+H + G+C ++ M
Sbjct: 192 LDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235
|
Length = 330 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 69/195 (35%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--E 122
+ + +S +F G ++I + +L +N G LLG +GCGK+T+L I G I +
Sbjct: 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD 74
Query: 123 ASDMSSLEAVISCDEER------------------------LKLEK--EAEILGAQEDGG 156
D++ + A E R L+++K AEI
Sbjct: 75 GQDITHVPA-----ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT------- 122
Query: 157 GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216
RV +EAL E+ A +K SGG + R+A+ARA+
Sbjct: 123 ----PRV---MEALRMVQLEEFAQ--------------RKPHQLSGGQQQRVAIARAVVN 161
Query: 217 NPTILLLDEPTNHLD 231
P +LLLDE + LD
Sbjct: 162 KPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (137), Expect = 6e-09
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 25/207 (12%)
Query: 73 IRIESLSVTFHGHD-----LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127
I+ E ++ T+ + + D +LE+ G L+G G GKSTLL + +
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 128 SL---EAVISCDEERLKLEKEAEILGAQEDGGGEQL--ERVYERLE------ALDASTAE 176
+ + V+S ++ +++ + +G QL E V + + + AE
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
K AAE L +G K + SGG R+A+A L + P +L+LDEPT LD +A +
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181
Query: 237 WLEETLKKFDRI------LVVISHSQD 257
E ++ F+ I +V+++H D
Sbjct: 182 ---EMMQLFESIHQSGQTVVLVTHLMD 205
|
Length = 288 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 6e-09
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 40/183 (21%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK 455
+ ++GPNG GK+T +KL+ G + P +G E L + QY+
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSE----------------EDLKVSYKP-QYISP 412
Query: 456 EYPGNEEEKMRAAIGRFGLTG--KAQVM-----------PMKNLSDGQRSRVVFAWLAYR 502
+Y G E+ +R+AI + K +++ P+ LS G+ RV A R
Sbjct: 413 DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR 472
Query: 503 QPHMLLLDEPTNHLDIE-------TIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVC 555
+ + LLDEP+ +LD+E I E + ++V HD +I+ V+ + V
Sbjct: 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIE---NNEKTALVVDHDIYMIDYVSDRLIVF 529
Query: 556 ENQ 558
E +
Sbjct: 530 EGE 532
|
Length = 591 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 31/222 (13%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I++ ++ + H + D L+ G LLG +G GKS+LL + +E +L
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN-- 60
Query: 133 ISCDEERLKLE-KEAEILGAQEDGGG--EQ---------LERVYE---RLEALDASTAEK 177
I+ + + I + + G +Q + + E R+ L A
Sbjct: 61 IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120
Query: 178 RAAEILYGLGFNKTMQAKKTRD-----FSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
RA ++L + ++ K D SGG + R+A+ARAL + P +LL DEPT LD
Sbjct: 121 RAEKLL------ERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 233 E---ACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271
E V + L + V+++H + + +++M+N
Sbjct: 175 EITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216
|
Length = 242 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-09
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-LRIAQFHQ--HLAEK--LDMDMSALQ 451
L+GPNGAGK+T ++++ G ++P G V L IA ++ +L E+ L M +
Sbjct: 30 GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVID 89
Query: 452 YMI-----KEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505
++ K E ++ + R L+ A ++ LS G + +V F P
Sbjct: 90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-RVEELSKGNQQKVQFIAAVIHDPE 148
Query: 506 MLLLDEPTNHLDIETIDSLAEALNEW-DGG--LVLVSHDFRLINQVAHEI 552
+L+LDEP + LD ++ L + + E G ++L +H L+ ++ +
Sbjct: 149 LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRV 198
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 7e-09
Identities = 53/236 (22%), Positives = 86/236 (36%), Gaps = 63/236 (26%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEAS------- 124
+ + L+ F G + D + G +GL+G NG GK+TL I G + +
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60
Query: 125 ----------------------------DMSSLEAVISCDEERLKLEKEAEILGAQEDGG 156
+++ LE V+ + AQ G
Sbjct: 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVM---------------VAAQARTG 105
Query: 157 GEQLERVYERLEALDASTAEKRAAEIL--YGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214
L R E A +RA E+L GL A + S G + R+ +ARAL
Sbjct: 106 SGLLLARARREER----EARERAEELLERVGLADLADRPA---GELSYGQQRRLEIARAL 158
Query: 215 FINPTILLLDEPT---NHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNII 267
+P +LLLDEP N + E L L++ ++++ H D + + +
Sbjct: 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 31/186 (16%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMV------------------RRHNHLRIAQFHQH- 438
++G +GAGKSTL++ + P G V RR I QH
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ----IGMIFQHF 91
Query: 439 --LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVV 495
L+ + AL + P +E + K+ + GL K P NLS GQ+ RV
Sbjct: 92 NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVA 150
Query: 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLVSHDFRLINQVAHE 551
A P +LL DE T+ LD T S+ E L E + L +L++H+ ++ ++
Sbjct: 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC 210
Query: 552 IWVCEN 557
+ V N
Sbjct: 211 VAVISN 216
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 57/222 (25%)
Query: 366 VLQFVEVT--FGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLK-------LMTGD 416
+++F V+ FG T + N+D +D V ++GP+G+GKSTLL+ + +GD
Sbjct: 1 MIEFKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD 57
Query: 417 LVPLDGM-----------VRRHNHLRIAQFHQHLAEKLDMDMSALQY----------MIK 455
L+ +DG+ +R+ + QF+ L ++AL+ K
Sbjct: 58 LI-VDGLKVNDPKVDERLIRQEAGMVFQQFY------LFPHLTALENVMFGPLRVRGASK 110
Query: 456 EYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515
E E++ R + + GL +A P LS GQ+ RV A +P ++L DEPT+
Sbjct: 111 E---EAEKQARELLAKVGLAERAHHYP-SELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166
Query: 516 LDIE-------TIDSLAEALNEWDG-GLVLVSHDFRLINQVA 549
LD E + LAE +G +V+V+H+ +VA
Sbjct: 167 LDPELRHEVLKVMQDLAE-----EGMTMVIVTHEIGFAEKVA 203
|
Length = 240 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 397 ALVGPNGAGKSTLLKLM-------TGDLV----PLDGMVRRHNHLRIAQFHQHLAEKLDM 445
L+G NG+GKSTLLK++ G+++ PL+ + ++A Q L M
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100
Query: 446 DMSALQYMIKEYP---------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496
+ L I YP + EK+ AI GL A + + +LS G+R R
Sbjct: 101 TVREL-VAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWI 158
Query: 497 AWLAYRQPHMLLLDEPTNHLDI-ETIDSLA--EALNEWDGGLVL-VSHDFRLINQVA 549
A L + LLLDEPT+ LDI +D LA L++ G V+ V HD IN A
Sbjct: 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD---INMAA 212
|
Length = 265 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 38/212 (17%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE-IEASDMSSLEA 131
I +L V + + +I +L++ + L+G +GCGKSTLL +E ++ + +E
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT 191
+ + I +E G Q + L D + G+ N
Sbjct: 65 EVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD---------NVAIGVKLNGL 115
Query: 192 MQAKKTRD--------------------------FSGGWRMRIALARALFINPTILLLDE 225
+++KK D SGG R R+ +ARAL + P ILL+DE
Sbjct: 116 VKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 226 PTNHLDLEACVWLEETL--KKFDRILVVISHS 255
PT ++D +EE L K + +V+++HS
Sbjct: 176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHS 207
|
Length = 253 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 60/209 (28%), Positives = 87/209 (41%), Gaps = 41/209 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA--------- 123
+ I +L+ +F G + D L + G + LLG +GCGKSTLL + E
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 124 ----SDMSSLEAVISCDEERLKL----EKEAEI-LGAQED--GGGEQLERVYERLEALDA 172
S + + I+ + L E I G ++D E RV E L +
Sbjct: 80 GVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM 139
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD- 231
KR K SGG R R+ALAR+L P +LLLDEP LD
Sbjct: 140 QEFAKR-----------------KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDK 182
Query: 232 -LEACVWLE--ETLKKFDRILVVISHSQD 257
L + LE + L++ V+++H Q+
Sbjct: 183 KLRDRMQLEVVDILERVGVTCVMVTHDQE 211
|
Length = 377 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 36/168 (21%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK 455
+ LVG +G GKSTL +L+ G P G + + E+
Sbjct: 42 LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK----DITKLSKEE------------- 84
Query: 456 EYPGNEEEKMRAAIGRFGLTGK-AQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLD 510
E++ + + GL + P + LS GQR R+ A R P +++ D
Sbjct: 85 -----RRERVLELLEKVGLPEEFLYRYPHE-LSGGQRQRIGIA----RALALNPKLIVAD 134
Query: 511 EPTNHLDIET---IDSLAEALNEWDG-GLVLVSHDFRLINQVAHEIWV 554
EP + LD+ I +L + L E G + +SHD ++ ++ I V
Sbjct: 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAV 182
|
Length = 268 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 30/189 (15%)
Query: 388 FGVDLD----SRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--------RIAQF 435
F V+L S A +G G+GKST+++L+ G VP G VR + L I Q
Sbjct: 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQI 83
Query: 436 HQHLAEKLDMDMSAL--QYMIKEY---PGN----EEEKMRAAIGRFGLTGKAQVMPMKN- 485
+ + S L + ++K+ P N +EE A + L G ++ + KN
Sbjct: 84 RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP 143
Query: 486 --LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSH 540
LS GQ RV A + +P +L+LDEPT LD + + +L + L++ +VLV+H
Sbjct: 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
Query: 541 DFRLINQVA 549
L++ VA
Sbjct: 204 ---LMDDVA 209
|
Length = 280 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 9e-09
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 17/197 (8%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ +E+++ F + D L++ G LLG +GCGK+T L I +E
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT----SGR 56
Query: 133 ISCDEERL-KLE-KEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRAAEILY 184
I + L K+ +I ++ VY+ +L + ++R E+
Sbjct: 57 IYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE 116
Query: 185 GLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244
L + +K + SGG R R+AL RA+ P + L+DEP ++LD + V + LK+
Sbjct: 117 LLQIEHLLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 245 FDRIL----VVISHSQD 257
+ L + ++H Q
Sbjct: 176 LQQRLGTTTIYVTHDQV 192
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 18/228 (7%)
Query: 64 LCSHPLSRDIRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122
L LS LS H H ++++ L L G LLG +GCGKSTL + +E
Sbjct: 4 LNVSGLSHHYAHGGLSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE 62
Query: 123 ASDMSSL----EAVISCDEERLKLEKEAEILGAQEDGG--------GEQLERVYERLEAL 170
+ ++ E + + + K + + Q+ E + L +L
Sbjct: 63 SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSL 122
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
D + RA+E+L + + ++ K+ SGG R+ LARAL + P +L+LDE ++L
Sbjct: 123 DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182
Query: 231 DL----EACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
DL L++ ++F + I+H + C ++ M N Q+
Sbjct: 183 DLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 41/217 (18%)
Query: 89 VDS-ELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEAS-------------DMSSL---- 129
VD+ LE+ G +G++G +G GK+TL I G +E + DM+
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 130 ----EAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEAL----DASTAEKRAAE 181
+ I + L +L + G +L R++A+ E++A E
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE 419
Query: 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET 241
IL K + S G R R+ALA+ L P I++LDEPT +D V + +
Sbjct: 420 IL----------DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS 469
Query: 242 L----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ ++ ++ +++SH DF+ VC M++ ++
Sbjct: 470 ILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 25/191 (13%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ +E++SV+F ++ D LEL G+ LLG NG GKSTL+ + + A D ++
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR- 63
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM 192
+L++ + L L R L T + +IL L K +
Sbjct: 64 ----NGKLRIGYVPQKLYLDT-----TLPLTVNRFLRLRPGT---KKEDILPAL---KRV 108
Query: 193 QAKKTRDF-----SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR 247
QA D SGG R+ LARAL P +L+LDEPT +D+ V L + + + R
Sbjct: 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168
Query: 248 IL----VVISH 254
L +++SH
Sbjct: 169 ELDCAVLMVSH 179
|
Length = 251 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 51/188 (27%), Positives = 69/188 (36%), Gaps = 43/188 (22%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
IR E+LS + G L+ L+L G +LG NG GKSTLL A+ GE+ S
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVT 59
Query: 132 VISCDEERLKLEKEA-------------------EI--LGAQEDGGGEQLERVYERLEAL 170
+ E+ A E+ +G G + E
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL------FINPTILLLD 224
A+T A Y R SGG + R+ LAR L + L LD
Sbjct: 120 LAATDLSGLAGRDY-------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166
Query: 225 EPTNHLDL 232
EPT+ LD+
Sbjct: 167 EPTSALDI 174
|
Length = 259 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 396 VALVGPNGAGKSTLLKLM-------TGDL----VPLDGM-------VRRHNHLRIAQFHQ 437
V L GP+G+GK+TLL L+ G L L G +RR+ I Q H
Sbjct: 34 VILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGY-IFQAHN 92
Query: 438 HL-----AEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492
L + + M + + + M A+G L P NLS GQ+
Sbjct: 93 LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG---LGDHLDYYP-HNLSGGQKQ 148
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEALNEWDGGLVLVSHDFRLINQV 548
RV A +P ++L DEPT LD ++ ++ + + E +++V+HD R+++ V
Sbjct: 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-V 207
Query: 549 AHEI 552
A I
Sbjct: 208 ADRI 211
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Query: 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE-ERLKLEK 144
D++ + + G ++G +G GKSTLL +G ++ +S + + + +L
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAA 80
Query: 145 EAEILGAQEDGGGEQLERVYERLEALD------------ASTAEKRAAEILYGLGFNKTM 192
+AE L Q+ G Q + AL+ + RA E+L +G
Sbjct: 81 KAE-LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA 139
Query: 193 QAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
+ + + SGG R R+A+ARAL NP ++L DEPT +LD
Sbjct: 140 NHRPS-ELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
Length = 233 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 38/193 (19%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA----QFHQHLAEKL------DM 445
+ L+GP+GAGKS+LL+++ +P G L IA F + ++K ++
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSG------TLNIAGNHFDFSKTPSDKAIRDLRRNV 84
Query: 446 DMSALQYMI----------KEYP------GNEEEKMRAA--IGRFGLTGKAQVMPMKNLS 487
M QY + E P ++ RA + R L A P+ +LS
Sbjct: 85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-HLS 143
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG-GL--VLVSHDFRL 544
GQ+ RV A +P +LL DEPT LD E + + E G+ V+V+H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
Query: 545 INQVAHEIWVCEN 557
+ A + EN
Sbjct: 204 ARKTASRVVYMEN 216
|
Length = 242 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 39/201 (19%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVR-----------RHNHLRIA 433
GV L + ++++G +G+GKST L+ + P G +R + L+ A
Sbjct: 24 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83
Query: 434 QFHQ--HLAEKLDM---------DMSALQYMIKEYP--------GNEEEKMRAAIGRFGL 474
Q L +L M M+ L+ +I E P E+ + + G+
Sbjct: 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-EAPVHVLGVSKAEAIERAEKYLAKVGI 142
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID---SLAEALNEW 531
KA P LS GQ+ RV A +P ++L DEPT+ LD E + + + L E
Sbjct: 143 AEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE 201
Query: 532 DGGLVLVSHDFRLINQVAHEI 552
+V+V+H+ V+ +
Sbjct: 202 GRTMVVVTHEMGFARDVSSHV 222
|
Length = 256 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 46/213 (21%)
Query: 367 LQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
+ + +F + + K+++ V VA+VGP G+GKS+LL + G+L L G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 423 MVRRHNHLRIA-----------------QFHQHL-AEKLD--MDMSALQYMIKEYP-GNE 461
V IA F + E+ + + AL+ ++ P G+
Sbjct: 61 SVSVPG--SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDL 118
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
E IG G+ NLS GQ+ R+ A Y + LLD+P + +D
Sbjct: 119 TE-----IGEKGI----------NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 522 DSLAEA--LNEWDGG--LVLVSHDFRLINQVAH 550
+ E L +LV+H +L+
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQ 196
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVP----------LDGMVRRHNHLRIAQFHQHLAEKLDM 445
+ LVGPNG GKST LK++ G L P D ++ R ++ + + L+
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD---EFRGSELQNYFTKLLEG 85
Query: 446 DMSAL---QY---MIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN--------LSDGQR 491
D+ + QY + K G E ++ R L + +++ LS G+
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGEL 145
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIE---TIDSLAEALNEWDGGLVLVSHD 541
RV A R DEP+++LDI+ L L E D +++V HD
Sbjct: 146 QRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 51/177 (28%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVRRH----NHLRIAQFHQHLA-----EKLDMDMS 448
LVGPNGAGKSTLL M G + G ++ + +H A + M
Sbjct: 30 LVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMP 88
Query: 449 ALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----- 502
Y+ P E + G L K LS G+ RV A + +
Sbjct: 89 VWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS-TNQLSGGEWQRVRLAAVVLQITPDA 147
Query: 503 --QPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
+LLLDEP N LD+ +D L AL + +V+ SHD + AH W+
Sbjct: 148 NPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWL 204
|
Length = 248 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 57/206 (27%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL 430
+T GY I +L + AL+GPNG GKSTLLK L P G V
Sbjct: 7 NLTVGYGTKR-ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDK 64
Query: 431 RIAQFH-QHLAEKLDMDMSAL---QYMIKE---------------------YPGNEEEKM 465
I+ + LA +L AL ++ E + ++
Sbjct: 65 PISMLSSRQLARRL-----ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV 119
Query: 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETI 521
A+ + + A + +LS GQR R A + + ++LLDEPT +LDI E +
Sbjct: 120 NQAMEQTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM 178
Query: 522 DSLAEALNEWDGGLVLVSHDFRLINQ 547
+ E LN +V V HD +NQ
Sbjct: 179 RLMRE-LNTQGKTVVTVLHD---LNQ 200
|
Length = 255 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 365 PVLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
++ F V+F Y D K++ F + ++VG NG+GKST+ KLM G G
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 424 VRRHNHLRIAQFHQHLAEKLDMDM---------SALQYMI------KEYPGNE-EEKMRA 467
+ +N + L + + + S ++Y + P +E ++
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
A+ + + +A P LS GQ+ RV A + P +++LDE T+ LD + +L +
Sbjct: 126 ALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184
Query: 528 LNE 530
+ +
Sbjct: 185 VRK 187
|
Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 43/186 (23%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVRRHNHLRIAQFH 436
I K ++ + AL+GPNG+GKSTL K + G +G +
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED------ 65
Query: 437 QHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRF----------GLTGKAQVMPM-KN 485
I + P E RA +G F G+ + + +
Sbjct: 66 -----------------ITDLPPEE----RARLGIFLAFQYPPEIPGVKNADFLRYVNEG 104
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDF 542
S G++ R L +P + +LDEP + LDI+ + +AE +N+ +++++H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 543 RLINQV 548
RL++ +
Sbjct: 165 RLLDYI 170
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 64/232 (27%), Positives = 93/232 (40%), Gaps = 46/232 (19%)
Query: 73 IRIESLSVTF-----HGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125
+ + ++S TF G L V + L +N G L G +G GKSTLL
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLL---------- 54
Query: 126 MSSLEAVISCDEERLKLEKEAE---ILGA----------QEDGGGEQLERVYERLEALD- 171
SL A DE ++ + E E ++ A G Q RV R+ ALD
Sbjct: 55 -RSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDV 113
Query: 172 -----------ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
A +AA++L L + + + FSGG + R+ +AR ++ I
Sbjct: 114 VAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPI 173
Query: 221 LLLDEPTNHLDL---EACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHM 269
LLLDEPT LD V L K LV I H ++ V ++ +
Sbjct: 174 LLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
|
Length = 235 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 67/219 (30%), Positives = 93/219 (42%), Gaps = 35/219 (15%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVP 419
+ F+ V+F Y P I + F + L VA+VG +GAGKST+L+L+ +
Sbjct: 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321
Query: 420 LDGMVRR---HNHLR--IAQFHQHLAEKLDMDMSALQYMIKEYPGN---EEEKMRAA--- 468
+DG R LR I Q D Y IK Y EE AA
Sbjct: 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIA----YNIK-YGRPDATAEEVGAAAEAA 376
Query: 469 -IGRF------GL-TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
I F G TG + LS G++ RV A + P +L+LDE T+ LD T
Sbjct: 377 QIHDFIQSLPEGYDTGVGERGLK--LSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434
Query: 521 IDSLAEALNEWDGG--LVLVSHDFRLINQVAHEIWVCEN 557
++ AL E G ++++H I A EI V +N
Sbjct: 435 EQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDN 472
|
Length = 497 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERLKLEK 144
++ D L + G+ +LG +G GK+TLL AI G +E +S + + + + K ++
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF--NGQPRKPDQ 78
Query: 145 EAEILGAQEDGGGEQLER------VYERL---------EALDASTAEKRAAEILYGLGFN 189
+ + Q + V E L + +KR ++L
Sbjct: 79 FQKCVAY-----VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL 133
Query: 190 KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ + SGG R R+++A L +P +L+LDEPT+ LD
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 24/177 (13%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDGMVRRHNHLRIAQ--- 434
+ F V L+GPNGAGK+T L+++ G L P +DG +
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
Query: 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNL-------- 486
F + L ++A + ++ + G K R L A + M+ L
Sbjct: 82 FVSD-STGLYDRLTARE-NLEYFAGLYGLKGDELTAR--LEELADRLGMEELLDRRVGGF 137
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-DGG--LVLVSH 540
S G R +V A P +LLLDEPT LD+ +L E + + G ++ +H
Sbjct: 138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 35/212 (16%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------------- 413
L+ + FG D +I +L+ ++ A++G +G+GKSTLL ++
Sbjct: 1 LKNISKKFG---DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 414 TGDLVPLDGMVRRHNHLR--IAQFHQHLA--------EKLDMDMSALQYMIKEYPGNEEE 463
G P + R + Q+ A E LD+ L+Y K + E
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDL---GLKY-KKLSKKEKRE 113
Query: 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID- 522
K + A+ + GL K + LS G++ RV A + P ++L DEPT LD + D
Sbjct: 114 KKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDE 172
Query: 523 --SLAEALNEWDGGLVLVSHDFRLINQVAHEI 552
L LN+ +++V+HD + Q A +
Sbjct: 173 VLDLLLELNDEGKTIIIVTHDPEVAKQ-ADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-08
Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 50/186 (26%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ + ++ F G + L + G + LLG NG GKSTL M L +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTL-----------MKILSGL 49
Query: 133 ISCDEERLKLE-KEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT 191
D + ++ KE ++ A + ++Y L
Sbjct: 50 YKPDSGEILVDGKEVSFASPRD---------------------ARRAGIAMVYQL----- 83
Query: 192 MQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRI 248
S G R + +ARAL N +L+LDEPT L L + +++
Sbjct: 84 ---------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVA 134
Query: 249 LVVISH 254
++ ISH
Sbjct: 135 VIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 27/218 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I +++S F ++ + +L ++ G ++G +G GKSTLL I ++E +++S + +
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLI 59
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD-------------ASTAEKRA 179
+ D ++ K E L QE G Q ++ L AL+ AEK+A
Sbjct: 60 V--DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA 117
Query: 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE 239
E+L +G + + + SGG + R+A+ARAL + P ++L DEPT+ LD E
Sbjct: 118 RELLAKVGLAERAHHYPS-ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL---RH 173
Query: 240 ETLKKFDRI------LVVISHSQDFLNGVCTNIIHMQN 271
E LK + +V+++H F V + +I +
Sbjct: 174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDK 211
|
Length = 240 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 21/196 (10%)
Query: 77 SLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE---AVI 133
S L D L + G +G GK+TL+ I + D + +
Sbjct: 4 RFSKRLGDFSLDADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL 61
Query: 134 SCDEERLKLEKEAEILGA--QED------GGGEQLERVYERLEALDASTAEKRAAEILYG 185
+ + L E +G QE L +R S ++
Sbjct: 62 FDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIEL 118
Query: 186 LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEET 241
LG + + SGG + R+A+ RAL +P +LL+DEP LD E +LE
Sbjct: 119 LGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERL 177
Query: 242 LKKFDRILVVISHSQD 257
+F ++ +SHS
Sbjct: 178 HAEFGIPILYVSHSLQ 193
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 53/204 (25%)
Query: 68 PLSRD----IRIESLSVTFH----------GHDLIVDS-ELELNYGRRYGLLGLNGCGKS 112
PL + +E L V F H+++V + L G GL+G +G GKS
Sbjct: 267 PLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKS 326
Query: 113 T-------LLTAIGEIEASDM--------------SSLEAVI----SCDEERLKLEKEAE 147
T L+ + GEI ++ V S RL + + E
Sbjct: 327 TTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386
Query: 148 ILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207
E L RV++ L A+ E++ ++ +G + + + +FSGG R R
Sbjct: 387 ----------EGL-RVHQP--TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433
Query: 208 IALARALFINPTILLLDEPTNHLD 231
IA+ARAL + P++++LDEPT+ LD
Sbjct: 434 IAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIG----------EIEASDMSSLEAVISCDEER 139
D L++ G + ++GL+G GKSTLL I I+ D++++ +E
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS-----RKEL 96
Query: 140 LKLEKEAEILGAQEDGGGEQ---LERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQA 194
+L ++ + Q LE V LE + + E+RAAE L +G + +
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGL-EGWEH 155
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL----KKFDRILV 250
K + SGG + R+ LARAL ++P ILL+DE + LD +++ L + + +V
Sbjct: 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIV 215
Query: 251 VISHSQD 257
I+H D
Sbjct: 216 FITHDLD 222
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 52/153 (33%)
Query: 103 LLGLNGCGKSTLLTAI--------GEI--EASDMSSLEAVISCDEERLK----------- 141
+LG NG GK+TLL + G I + D++ L ER +
Sbjct: 31 VLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP-----HERARAGIAYVPQGRE 85
Query: 142 ----LEKEAEIL-GAQEDGGGEQ--LERVYERLEALDASTAEKRAAEILYGLGFNKTMQA 194
L E +L G + + +YE L K M
Sbjct: 86 IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVL-------------------KEMLG 126
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
++ D SGG + ++A+ARAL P +LLLDEPT
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 34/190 (17%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVP------LDGMV--------------RRHNHL-RIAQF 435
AL GP+G+GK++L+ ++ G P L+G V RR ++ + A+
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVV 495
H + L+Y + + + + + G+ P LS G++ RV
Sbjct: 88 FPHYTVR-----GNLRYGMWK---SMRAQFDQLVALLGIEHLLDRYPGT-LSGGEKQRVA 138
Query: 496 FAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHE 551
P +LL+DEP LD+ E + L +E + ++ VSH + ++A
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198
Query: 552 IWVCENQAVT 561
+ V EN V
Sbjct: 199 VVVLENGKVK 208
|
Length = 352 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISC 135
++L+ + G ++ D L +N G GLLG NG GK+T + I D + I
Sbjct: 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN----III 62
Query: 136 DEERLKL----EKEAEILG--AQEDGGGEQLERVYERLEA-------LDASTAEKRAAEI 182
D+E + L + +G QE +L VY+ L A L A E RA E+
Sbjct: 63 DDEDISLLPLHARARRGIGYLPQEASIFRRLS-VYDNLMAVLQIRDDLSAEQREDRANEL 121
Query: 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ ++ + SGG R R+ +ARAL NP +LLDEP +D
Sbjct: 122 MEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG R RIA+ARAL +P IL+LDE T+ LD E+ ++ L++ +R VI+H
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH 195
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
A++RA E+L +G + + + SGG R R+A+ARAL P+++L DEPT +LD
Sbjct: 118 AKERAYEMLEKVGLEHRIN-HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176
Query: 235 CVWLEETLKKFDRI----LVVISHSQDFLNGVCTNIIHMQNKQLK 275
+ + + + +R +V++H L ++ M++ QL
Sbjct: 177 AKIIFDLMLELNRELNTSFLVVTHD-LELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 30/204 (14%)
Query: 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE 122
+I E+++ ++ ++ D + G ++G G GK+TL+ + G+I
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61
Query: 123 ASDMSSLEAVISCDEERLKLEKEAEILGAQEDG--GGEQLERV-YERLEALDASTAEKRA 179
+ I + +L Q+ G +E + R A D A
Sbjct: 62 IDGID-----IRDISRKSLRSMIGVVL--QDTFLFSGTIMENIRLGRPNATDEE--VIEA 112
Query: 180 AEILYGLGFNK-------TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
A+ F T+ + + S G R +A+ARA+ +P IL+LDE T+++D
Sbjct: 113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
Query: 233 EACVWLEETLKKF--DRILVVISH 254
E ++E L+K R ++I+H
Sbjct: 173 ETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 75 IESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ LS+++ G D L + G +LG +GCGK+TLL + A ++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLL----NLIAGFVTPSRGS 61
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYE-----RLEALDASTAEKRAAEILYGLG 187
I + R++ + Q + L + +L ++ + + A ++L +G
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG 121
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ K SGG R R+ +ARAL + P +LLLDEP LD
Sbjct: 122 LEGA-EHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164
|
Length = 259 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 14/214 (6%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ +E+++ F + D + G +GLLG NG GK+T + I I D
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD----SGE 56
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRAAEILYGL 186
+ D + L + I E+ G +V + +L+ L A +R E L L
Sbjct: 57 VLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERL 116
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLK 243
++ K+ + S G + ++ A+ +P +L+LDEP + LD L++ L
Sbjct: 117 ELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175
Query: 244 KFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277
+ + +++ +H + + +C ++ + + Y
Sbjct: 176 RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV----RRHNHLR-----IAQ 434
+L+ + V L+GP+G GK+T L+++ G P G + R L IA
Sbjct: 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAM 76
Query: 435 FHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSD 488
Q+ A L M+ + +++ P +E +E++R + P K LS
Sbjct: 77 VFQNYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-KQLSG 133
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
GQR RV R+P + L+DEP ++LD
Sbjct: 134 GQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-08
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L F + TP + KN+ F ++ +A+ G G+GKS+LL ++ G+L P +G ++
Sbjct: 429 LFFSNFSLYVTP---VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH 485
Query: 427 HNHLRIA-QFHQHLAEKL-DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK 484
+ + Q + + D + L Y +E + + I L + P K
Sbjct: 486 SGRISFSPQTSWIMPGTIKDNIIFGLSY--------DEYRYTSVIKACQLEEDIALFPEK 537
Query: 485 N----------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
+ LS GQR+R+ A Y+ + LLD P HLD+ T
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 48/213 (22%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
+ +V++ Y + I ++ + ++S+ +VG +G+GKSTL KL+ G G +
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 427 HNHLRIAQFHQHL---------AEKLDMDMSALQ-YMIKEYPGNEEEKMRAAIGRFGLTG 476
N + +H E S L+ ++ ++++ AA +
Sbjct: 534 -NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592
Query: 477 KAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----ID 522
+ MP+ ++S GQ+ R+ A +L+LDE T++LD T ++
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652
Query: 523 SLAEALNEWDGGLVLVSHDFRL-INQVAHEIWV 554
+L LN D ++ V+H RL + + + +I V
Sbjct: 653 NL---LNLQDKTIIFVAH--RLSVAKQSDKIIV 680
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQD 257
SGG + R+ LARAL +P +LLLDEP +D + + E L++ ++V++H
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193
Query: 258 FLNGVCTNIIHMQNKQLKFY 277
+ ++ + N+ +
Sbjct: 194 LVLEYFDRVLLL-NRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 4e-08
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 53/155 (34%)
Query: 102 GLLGLNGCGKSTLLTAI--------GEI--EASDMSSLEAVISCDEERLKL------E-- 143
LLG NG GK+TLL I G I + D++ L ER + E
Sbjct: 30 ALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-----HERARAGIGYVPEGR 84
Query: 144 --------KEAEILGAQ---EDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM 192
+E +LGA +LERVYE L K
Sbjct: 85 RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-------------------KER 125
Query: 193 QAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
+ + SGG + +A+ARAL P +LLLDEP+
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 22/191 (11%)
Query: 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
P +L V +G + + LD + VA+VG +G GKSTLL+L+ G P G
Sbjct: 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE 68
Query: 424 VR---------RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474
+ R + + Q + L K +D L G + A+ GL
Sbjct: 69 LLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGL-----KGQWRDAALQALAAVGL 123
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEW 531
+A P LS GQ+ RV A +P +LLLDEP LD T + L E+L +
Sbjct: 124 ADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182
Query: 532 DGGLV-LVSHD 541
G V LV+HD
Sbjct: 183 HGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 394 SRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LR-----IAQF 435
S VA++G G+GKSTLL+ + G L P G V LR + QF
Sbjct: 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQF 93
Query: 436 --HQHLAEKLDMDMS--ALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491
HQ E ++ D+ + + + E + ++K R I GL + LS GQ
Sbjct: 94 PEHQLFEETVEKDICFGPMNFGVSE--EDAKQKAREMIELVGLPEELLARSPFELSGGQM 151
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHDFRLINQ 547
RV A + +P +L+LDEPT LD E ++ + E VLV+H +
Sbjct: 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR 211
Query: 548 VAHEIWVCENQAVTR 562
A +I V V
Sbjct: 212 YADQIVVMHKGTVFL 226
|
Length = 290 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 31/173 (17%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLER 162
LLG +GCGK+TLL + E D + L+ E + +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-----------SGSIMLDGEDVTNVPPHLRHINMVFQ 49
Query: 163 VYE---------------RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207
Y ++ + + + R E L L + +K SGG + R
Sbjct: 50 SYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEAL-RLVQLEEFADRKPHQLSGGQQQR 108
Query: 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQ 256
+ALARAL P ILLLDEP + LD + ++ LK L V ++H Q
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 22/202 (10%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEI- 148
EL + G ++G +G GKSTLL + ++ D SS E + + KL+++A
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD--DPSSGEVRLL-GQPLHKLDEDARAA 84
Query: 149 LGAQEDGGGEQ----------LERVYERLEALDASTAEKR--AAEILYGLGFNKTMQAKK 196
L A+ G Q LE V LE S+A+ R A +L +G K +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-HY 143
Query: 197 TRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR----ILVVI 252
SGG + R+ALARA P +L DEPT +LD + + L +R LV++
Sbjct: 144 PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV 203
Query: 253 SHSQDFLNGVCTNIIHMQNKQL 274
+H L C + +++ +L
Sbjct: 204 THDPQ-LAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 55/213 (25%)
Query: 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151
+ G + L+G +G GKST+L + +E D ++ E E L
Sbjct: 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV-------------EGEQLYH 66
Query: 152 QEDGGGE--------------------QLERVYERLEALDAST-------------AEKR 178
G Q ++ LD T AEKR
Sbjct: 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR 126
Query: 179 AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL 238
A E+L +G + SGG + R+A+ARAL + P ++L DE T+ LD E +
Sbjct: 127 AMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 239 EETLKKF----DRILVVISH----SQDFLNGVC 263
+++ D +++++H +++F + VC
Sbjct: 186 LNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 26/209 (12%)
Query: 66 SHPLSRDIRIESLSVTFH-----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE 120
PL +I E V F + L + G L+G +G GKSTL +
Sbjct: 331 PVPLRGEIEFEQ--VNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388
Query: 121 I--EASDMSSLEAVISCDEERLKLEKEAEILGAQEDG--GGEQLERVYERLEALDASTAE 176
S L+ V + +L + L Q+ +E + R DA+ E
Sbjct: 389 FYDPQSGRILLDGVDLRQLDPAEL-RARMALVPQDPVLFAASVMENI--RYGRPDATDEE 445
Query: 177 KRAA-------EILYGL--GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
AA E + L G++ T ++ SGG R RIA+ARA+ + ILLLDE T
Sbjct: 446 VEAAARAAHAHEFISALPEGYD-TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504
Query: 228 NHLDLEACVWLEETLKKF--DRILVVISH 254
+ LD E+ +++ L+ R ++I+H
Sbjct: 505 SALDAESEQLVQQALETLMKGRTTLIIAH 533
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISH 254
SGG + RIA+ARAL P +L+LDE T+ LD E L+E+ + R +++I+H
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414
++F VTF Y D + +++ + VALVGP+G+GKSTL+ L+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 21/205 (10%)
Query: 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI 133
+ +L++ + + D +++ + L+G +GCGKST L + ++ ++ ++
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMN-DKIAKIDGLV 62
Query: 134 SCDEERLK------LEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRA-- 179
+ + +K L K ++ Q + ++ +YE +L + + E+ A
Sbjct: 63 EIEGKDVKNQDVVALRKNVGMVFQQPN---VFVKSIYENISYAPKLHGMIKNKDEEEALV 119
Query: 180 AEILYGLGFNKTMQAKKTRD---FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
+ L +G + ++ K ++ SGG + R+ +ARAL I P +LLLDEPT+ LD +
Sbjct: 120 VDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSG 179
Query: 237 WLEETLKKFDRILVVISHSQDFLNG 261
+EE LK+ L +I + + G
Sbjct: 180 VIEELLKELSHNLSMIMVTHNMQQG 204
|
Length = 246 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 37/195 (18%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCDEE--- 138
++ L++ G L+GL+G GKSTLL A+ G + D V +CD
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 139 RLKLEKEAEILGAQEDGGGEQL---ERVYERLEALDASTAE--KRAAEILYGLGFNKTMQ 193
RL+ + + + Q+ E V LE AE KR E L +G +
Sbjct: 102 RLRTHRVSMVF--QQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQ-WA 158
Query: 194 AKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD-----------LEACVWLEETL 242
+K + SGG + R+ LARA ILL+DEP + LD LE L+ L
Sbjct: 159 DRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE----LQSKL 214
Query: 243 KKFDRILVVISHSQD 257
KK +V +SH D
Sbjct: 215 KK---TIVFVSHDLD 226
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCD 136
H I D E G+ Y ++G G GKSTL+ I G + D++ + D
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHK--TKD 77
Query: 137 EERLKLEKEAEIL----GAQ--EDGGGEQLERVYE---RLEALDASTAEKRAAEILYGLG 187
+ + K ++ +Q ED +ER + ++ + A +L LG
Sbjct: 78 KYIRPVRKRIGMVFQFPESQLFED----TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG 133
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-- 245
F++ + ++ SGG +IA+ L +NP I++LDEPT LD ++ + LK
Sbjct: 134 FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 246 --DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++ ++++SH + + +I M+ +
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 28/155 (18%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQ---- 437
+ KN++ ++ +A+ G G+GK++LL L+ G+L P +G ++ RI+ Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWI 109
Query: 438 ---HLAEKLDMDMSALQY----MIKEYPGNEE-----EKMRAAIGRFGLTGKAQVMPMKN 485
+ E + +S +Y ++K E+ EK +G G+T
Sbjct: 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT---------- 159
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
LS GQR+R+ A Y+ + LLD P +LD+ T
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 6e-08
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 51/248 (20%)
Query: 73 IRIESLSVTFHGHDL--IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM---S 127
++I++ V F D + +E+ +G +GCGKST L + +D+ +
Sbjct: 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRM--NDLIPAT 59
Query: 128 SLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
LE I D + + G Q D + + V++R S E A YGL
Sbjct: 60 RLEGEIRIDGRNIYDK------GVQVDELRKNVGMVFQRPNPFPKSIFENVA----YGLR 109
Query: 188 FN-------------KTMQAKKTRD------------FSGGWRMRIALARALFINPTILL 222
N +T++ D SGG + R+ +ARA+ ++P++LL
Sbjct: 110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLL 169
Query: 223 LDEPTNHLDLEACVWLEETLK--KFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280
+DEP + LD + +EE + K D +V+++H+ + +K FY G
Sbjct: 170 MDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQ-------QAARVSDKTAFFYMGE 222
Query: 281 FDQYVQTR 288
+Y T+
Sbjct: 223 MVEYDDTK 230
|
Length = 250 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 40/194 (20%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH------------QHLAEKL 443
+ L+GP+GAGKS+LL+++ +P G L IA H + L +
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSG------TLNIAGNHFDFSKTPSDKAIRELRRNV 84
Query: 444 DM---------DMSALQYMIKEYP------GNEEEKMRAA--IGRFGLTGKAQVMPMKNL 486
M ++ Q +I E P ++ RA + R L A P+ +L
Sbjct: 85 GMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPL-HL 142
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE---TIDSLAEALNEWDGGLVLVSHDFR 543
S GQ+ RV A +P +LL DEPT LD E I S+ L E V+V+H+
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202
Query: 544 LINQVAHEIWVCEN 557
+ + A + EN
Sbjct: 203 VARKTASRVVYMEN 216
|
Length = 242 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 20/175 (11%)
Query: 359 VGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418
G + + V+ Y D + L F V L+GPNGAGKST+ +++ G
Sbjct: 34 PGSMSTVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS 92
Query: 419 PLDGMVR----------RHNHLRIAQFHQHLAEKLDMDMSALQYMI--KEYPGNEEEKMR 466
P G + R RI Q + LD++ + + ++ Y G ++
Sbjct: 93 PDAGKITVLGVPVPARARLARARIGVVPQF--DNLDLEFTVRENLLVFGRYFGMSTREIE 150
Query: 467 AAIGRF----GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
A I L KA + +LS G + R+ A P +L+LDEPT LD
Sbjct: 151 AVIPSLLEFARLESKADA-RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA--- 131
+ ++S + ++ +L + G+ ++G +GCGKSTLL + +E L A
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 132 --VISCDEERLKLEKEAEILGAQE--DGGGEQLERVY--ERLEALDASTAEKRAAEILYG 185
+ ++ RL + +A +L ++ D G L+ + L+AL A RA E
Sbjct: 75 PLAEAREDTRLMFQ-DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA 133
Query: 186 LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
L SGG + R+ALARAL P +LLLDEP LD
Sbjct: 134 L--------------SGGQKQRVALARALIHRPGLLLLDEPLGALD 165
|
Length = 257 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 8e-08
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---- 425
V ++G D ++ +L F + L+GPNGAGKST+ +++ G + P G +
Sbjct: 10 VSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66
Query: 426 ------RHNHLRIAQFHQHLAEKLDMDMSALQYMI--KEYPGNEEEKMRAAIGRF----G 473
R + I Q + LD + + + ++ Y G ++ A I
Sbjct: 67 PVPSRARLARVAIGVVPQF--DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 124
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
L KA V + LS G + R+ A P +L+LDEPT LD
Sbjct: 125 LESKADV-RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 9e-08
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I + +S ++ ++ D + G +GLLG NG GKST+ + + + D + +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLER---------VYERLEALDASTAEKRAAEIL 183
R +L + A + Q D L+ V+ R + E +L
Sbjct: 65 GEPVPSRARLARVAIGVVPQFD----NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120
Query: 184 YGLGFNKTMQAKKTR--DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
F + R SGG + R+ LARAL +P +L+LDEPT LD A
Sbjct: 121 ---EFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 9e-08
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--E 122
+ +E+LS + + LE+ G LLG NG GK+TLL I G I +
Sbjct: 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 123 ASDMSSLEAVISCDEERLKLEKEAEILG----AQEDGGGEQLERVYERLE----ALDAST 174
D++ L ER +L G + +L V E L A
Sbjct: 64 GEDITGLPP-----HERARL-------GIAYVPEGRRIFPRLT-VEENLLLGAYARRDKE 110
Query: 175 AEKRAAEILYGLGFN--KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
A++R E +Y L F K + ++ SGG + +A+ARAL P +LLLDEP+
Sbjct: 111 AQERDLEEVYEL-FPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 49/219 (22%), Positives = 82/219 (37%), Gaps = 44/219 (20%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP----------LDGMVRRHNHLR--- 431
+L+ + +ALVG +G+GKS + G L P LDG +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 432 ---IAQ-----------FHQHLAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTG 476
I Q H E L + + A+ GL
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETL---------RSLGKLSKQARALILEALEAVGLPD 114
Query: 477 KAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNE 530
+V+ LS G RV+ A +P L+ DEPT LD+ + L E
Sbjct: 115 PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174
Query: 531 WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569
+ G++L++HD ++ ++A E+ V ++ + G + +
Sbjct: 175 FGTGILLITHDLGVVARIADEVAVMDDGRIVE-RGTVKE 212
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 41/210 (19%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLK-LM-----------------TGDLVPLDGMVR 425
+++ F V+ + +VG +G+GKSTL LM DL+ L
Sbjct: 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85
Query: 426 RHNHLR---IAQFHQHLAEKLDMDMSALQYMIK----EYPGNEEEKMRAAIGRFGLTGKA 478
R LR IA Q L+ M+ + + G+ E + A+ G
Sbjct: 86 RK--LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLP 143
Query: 479 QVMPMKN------LSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLDIET----IDSLAEA 527
P + LS G R RV+ A LA +P +L+ DEPT LD+ T +D L +
Sbjct: 144 D--PERRDRYPHQLSGGMRQRVMIAMALA-LKPKLLIADEPTTALDVTTQAQILDLLKDL 200
Query: 528 LNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
E ++ ++HD ++ ++A + V
Sbjct: 201 QRELGMAVLFITHDLGVVAELADRVVVMYK 230
|
Length = 539 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLER 162
L+G +G GKSTLL I + E +S ++ ++ L A ++ G Q R
Sbjct: 32 LVGPSGAGKSTLLKLIYKEELP--TSGTIRVN-GQDVSDLRGRAIPYLRRKIGVVFQDFR 88
Query: 163 ------VYER----LEALDASTAE--KRAAEILYGLGFNKTMQAKKTRDF----SGGWRM 206
VYE LE E KR L +G + K R SGG +
Sbjct: 89 LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL-----SHKHRALPAELSGGEQQ 143
Query: 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR---ILVVISHSQDFLN 260
R+A+ARA+ +PTIL+ DEPT +LD + + LKK ++ +VV +H+++ ++
Sbjct: 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVIS 134
++++S+ G L+ + + G L+G +GCGKSTLL+ + A S +
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS-CTGELW 63
Query: 135 CDEERLKL----EKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNK 190
+E+RL + +++ IL Q+ L V + L +T + A +
Sbjct: 64 LNEQRLDMLPAAQRQIGIL-FQDALLFPHLS-VGQNLLFALPATLKGNARRNAANAALER 121
Query: 191 TMQAKKTRDF----SGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ SGG R R+AL RAL P LLLDEP + LD
Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 36/176 (20%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN----------HLRIAQFHQHLAEKLDM 445
V ++GPNG GKST LK++ G+L P G R+ R + + + +
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLG---RYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 446 DMSALQ------YMIKEYPGNEEEKMRAA---------IGRFGLTGKAQVM--PMKNLSD 488
++ A+ + K G E ++ + R GL V+ + LS
Sbjct: 160 ELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN---VLDRDVSELSG 216
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA---LNEWDGGLVLVSHD 541
G+ RV A R + DEP+++LDI + A L E +++V HD
Sbjct: 217 GELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
|
Length = 591 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGE-IEASDMSSLEAVISCDEERLKLEKEAEI 148
D++L + G + ++GL+G GKST + + IE + I D E + + E+
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-----AGQIFIDGENIMKQSPVEL 65
Query: 149 LGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRD--------- 199
+ +++ V+++ T + + LG+ + + +K +
Sbjct: 66 REVRR----KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 200 --------FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DR 247
SGG + R+ LARAL P ILL+DE + LD +++ LKK +
Sbjct: 122 YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 248 ILVVISHSQDFLNGVCTNIIHMQN 271
+V I+H D + I+ M+
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKA 205
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 32/208 (15%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS---L 129
I+I ++ +H H ++ + ++ + ++G +GCGKSTLL A+ + +D+ S L
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM--NDIVSGARL 62
Query: 130 EAVISCDEERL--------KLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAE 181
E + D E + L K ++ Q + + + + +TA+ R E
Sbjct: 63 EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDE 122
Query: 182 ILYGLGFNKTMQAKKTRD------------FSGGWRMRIALARALFINPTILLLDEPTNH 229
++ K+++ D SGG + R+ +AR L I P ++L+DEP +
Sbjct: 123 VV-----EKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 230 LDLEACVWLEETLKKFDR--ILVVISHS 255
LD + + +EE +++ + + +++H+
Sbjct: 178 LDPVSTMRIEELMQELKQNYTIAIVTHN 205
|
Length = 251 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 34/199 (17%)
Query: 83 HGHDLIV-DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVI 133
G + V D+ L++ G + ++GL+G GKSTL+ + GEI + +
Sbjct: 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDG----KDIA 93
Query: 134 SCDEERLK-LEKEAEILGAQ----------EDGGGEQLERVYERLEALDASTAEKRAAEI 182
L+ L ++ + Q + LE ++ + + E+RA E
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE-----VQGVPKAEREERALEA 148
Query: 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL 242
L +G K + SGG + R+ LARAL +P ILL+DE + LD +++ L
Sbjct: 149 LELVGLEG-YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL 207
Query: 243 ----KKFDRILVVISHSQD 257
K + +V I+H D
Sbjct: 208 LELQAKLKKTIVFITHDLD 226
|
Length = 386 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 32/209 (15%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDG-----MVRRH 427
+ I+ N+ V A++GP+G GK+TLL+L+ G + P DG M R
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR 78
Query: 428 NHL---RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR---------FGLT 475
+ R++ Q A L DM+ + YP E ++ A + GL
Sbjct: 79 LYTVRKRMSMLFQSGA--LFTDMNVFDNV--AYPLREHTQLPAPLLHSTVMMKLEAVGLR 134
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL 535
G A++MP + LS G R A +P +++ DEP D T+ L + ++E + L
Sbjct: 135 GAAKLMPSE-LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193
Query: 536 ----VLVSHDFRLINQVAHEIWVCENQAV 560
V+VSHD + +A ++ ++ +
Sbjct: 194 GVTCVVVSHDVPEVLSIADHAYIVADKKI 222
|
Length = 269 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 75/186 (40%)
Query: 396 VALVGPNGAGKSTLLKL---------MTGDL----VPLD--------GMVRRHNHLRIAQ 434
A++GP+GAGKSTLL ++G++ PLD G V + + L
Sbjct: 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDIL---- 93
Query: 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494
H L + + +A ++ LS G+R RV
Sbjct: 94 -HPTLTVRETLMFAAK--------------------------------LRGLSGGERKRV 120
Query: 495 VFAWLAYRQPHMLLLDEPTNHLD-------IETIDSLAEALNEWDGGLVLVSHDFRLINQ 547
A P +L LDEPT+ LD + + LA+ G ++ S I+Q
Sbjct: 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-----TGRTIICS-----IHQ 170
Query: 548 VAHEIW 553
+ EI+
Sbjct: 171 PSSEIF 176
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 23/211 (10%)
Query: 80 VTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEA 131
V + L ++ +L + G ++G +G GKSTLL I G I+ +D S
Sbjct: 6 VRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL 65
Query: 132 VISCDEERLKLEKE---AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGF 188
+ ++ A + Q G G +L A A ++ G+
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQV--GIA- 119
Query: 189 NKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKK 244
+ SGG R R+ALAR L ILLLDEP + LD E +++ +
Sbjct: 120 --DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177
Query: 245 FDRILVVISHSQDFLNGVCTNIIHMQNKQLK 275
R L++++H + + I + ++K
Sbjct: 178 RQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 29/187 (15%)
Query: 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEA 146
LI + L L G+R L+G +G GKST I ++ A I D + E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKST----IAKLVAGLYQPWSGEILFDGIPRE-EIPR 548
Query: 147 EILGA-----QED----GGGEQLERVYERLEALDASTAEK---RAA-------EILYGLG 187
E+L +D G V + L D + + RA I G
Sbjct: 549 EVLANSVAMVDQDIFLFEG-----TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPG 603
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR 247
A+ + SGG R R+ +ARAL NP+IL+LDE T+ LD E +++ L++
Sbjct: 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGC 663
Query: 248 ILVVISH 254
++++H
Sbjct: 664 TCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 386 LDFGVDLDSRVALVGPNGAGKSTLLK----LMTGDLVP------LDGMVRRHNHL----R 431
+D + VAL+GP+G+GKSTLL+ L+TGD L V+R L R
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 432 IAQFHQ-------HLAEKLDMDMSALQYMIKEYP--------GNEEEKMRA--AIGRFGL 474
++ + +L +L + + L + P E+K RA A+ R G+
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM 142
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL---NEW 531
A + LS GQ+ RV A +Q ++L DEP LD E+ + + L N+
Sbjct: 143 VHFAH-QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN 201
Query: 532 DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562
DG V+V+ ++QV + + CE R
Sbjct: 202 DGITVVVT-----LHQVDYALRYCERIVALR 227
|
Length = 262 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDGMVRRHNH----LRIA 433
+ F + + +VG +G+GKS L K + G L+P + G + L
Sbjct: 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 434 QFHQHLAEKLDM----DMSAL--------Q----YMIKEYPGNEEEKMRAAIG---RFGL 474
+ + +++ M M++L Q + +++E AI G+
Sbjct: 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGI 140
Query: 475 TGKAQVMPM--KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEAL 528
+ + LS G R RV+ A P +L+ DEPT LD+ +D L E
Sbjct: 141 PDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ 200
Query: 529 NEWDGGLVLVSHDFRLINQVAHEIWV 554
E L+L++HD ++ ++A + V
Sbjct: 201 REKGTALILITHDLGVVAEIADRVAV 226
|
Length = 316 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 72 DIRIESLSV-TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE 130
I +E+LS+ T G L+ + E+ G R + G +G GK++LL A+ +
Sbjct: 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR-- 449
Query: 131 AVISCDEERLKLEKEAEILGAQEDGGG---EQLERVYERLEALDASTAEKRAAEILYGLG 187
+ + L + L G E L Y D S AE A GLG
Sbjct: 450 -ISMPADSALLFLPQRPYLPQ-----GTLREAL--CYPNAAP-DFSDAELVAVLHKVGLG 500
Query: 188 -----FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL 242
++ + R SGG + R+A AR L P + LDE T+ LD E L + L
Sbjct: 501 DLAERLDEE--DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL 558
Query: 243 KK--FDRILVVISHSQDFLN 260
K+ D ++ + H N
Sbjct: 559 KEELPDATVISVGHRPTLWN 578
|
Length = 604 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 22/211 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ + NL+ + + +VGP+G+GKSTL KL+ P G V
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGK 477
L IA Q L E + S + PG E + A G
Sbjct: 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDF 575
Query: 478 AQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
+P NLS GQR R+ A P +L+ DE T+ LD E+ +
Sbjct: 576 ISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN 635
Query: 528 LNEWDGG--LVLVSHDFRLINQVAHEIWVCE 556
+ E G +++++H + I V E
Sbjct: 636 MREICRGRTVIIIAHRLSTVRA-CDRIIVLE 665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 71 RDIRIE--SLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMS 127
RD +E L T+ L V+ E E+ G G+LG NG GK+T + + G I+ + S
Sbjct: 339 RDTLVEYPDLKKTYGDFKLEVE-EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397
Query: 128 SLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEAL--DASTAEKRAAEILYG 185
+ +S + + + + V + L + A + EI+
Sbjct: 398 EEDLKVSYKPQYISPDYDG---------------TVEDLLRSAIRSAFGSSYFKTEIVKP 442
Query: 186 LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE 233
L ++ + + SGG R+A+A AL + LLDEP+ +LD+E
Sbjct: 443 LNLEDLLE-RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVE 489
|
Length = 591 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 34/213 (15%)
Query: 92 ELELNYGRRYG-----------------LLGLNGCGKSTLLTAIGEIEASDMSSLEAVIS 134
LELN+ +R G L G +G GK++L+ I + D E I
Sbjct: 1 MLELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD----EGRIE 56
Query: 135 CDEERLKLEKEAEILGAQEDGGGEQLE--------RVYERLEALDASTAEKRAAEILYGL 186
+ L ++ L ++ G + V L + + +++ L
Sbjct: 57 LNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL 116
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEETL 242
G + + SGG + R+A+ RAL P +LL+DEP LDL E +LE
Sbjct: 117 GIEHLLD-RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175
Query: 243 KKFDRILVVISHSQDFLNGVCTNIIHMQNKQLK 275
+ + ++ +SHS D + + ++ ++N ++K
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVK 208
|
Length = 352 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 41/195 (21%)
Query: 71 RDIRIESLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSS 128
R++ + S L+ + + G ++G +G GKSTLL A+ G +S
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66
Query: 129 LEAVISCDEERLKLEKEAEILG--AQEDGGGEQLERVYERL---EALDASTAEKRAAEIL 183
+ + L +I+G Q+D ++ L E L + A++
Sbjct: 67 EVLI---NGRPLDKRSFRKIIGYVPQDD-------ILHPTLTVRETLMFA------AKL- 109
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK 243
R SGG R R+++A L NP++L LDEPT+ LD + + + L+
Sbjct: 110 --------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR 155
Query: 244 KF---DRILVVISHS 255
+ R ++ H
Sbjct: 156 RLADTGRTIICSIHQ 170
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET---LKKFDRILVVISHS 255
SGG + R+ +ARAL + P +LLLDEPT+ LD A +EE LKK +V+++H+
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHN 202
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 36/211 (17%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I++ +LS + ++ +E+ + ++G +GCGKST L + M+ LE+
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR-----MNELESE 62
Query: 133 ISCD-----------EERL---KLEKEAEILGAQED----------GGGEQLERVYERLE 168
+ + E R+ +L ++ ++ + + G ++ +LE
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 169 ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
D + + A++ + K K D SGG + R+ +ARAL + P +LL+DEP
Sbjct: 123 IDDIVESALKDADLWDEI---KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 229 HLDLEACVWLEETLKKF----DRILVVISHS 255
LD A + +E ++ + +V++SH+
Sbjct: 180 GLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
|
Length = 261 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 63/229 (27%), Positives = 93/229 (40%), Gaps = 31/229 (13%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-----------RRH 427
D + K L+ L LVG NG GKSTL ++G L P G V R
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 428 NHLR--IAQFHQHLAEKL---DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV-- 480
LR +A Q +++ D+D S + + ++ E E R L
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDID-SDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH 131
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-------IETIDSLAEALNEWDG 533
P++ LS GQ+ RV A Q LLLDEPT LD I I + N
Sbjct: 132 QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH--- 188
Query: 534 GLVLVSHDFRLINQVAHEIWV-CENQAVTRWEGDIMDFKLHLKAKAGLS 581
+++ SHD LI +++ ++V + Q +T + +AGL+
Sbjct: 189 -VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLT 236
|
Length = 271 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 53/206 (25%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441
I K ++ V A++GPNG+GKSTL K + G H +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG-----------HPSYEVTSGTILFKG 63
Query: 442 KLDMDMS-----------ALQYMIKEYPG-NEEEKMRAAI----GRFG------------ 473
+ +++ A QY E PG + E +R+A+ G
Sbjct: 64 QDLLELEPDERARAGLFLAFQYPE-EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL 122
Query: 474 LTGKAQVMPM------KNL----SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523
L K ++ M +++ S G++ R +A +P + +LDE + LDI+ +
Sbjct: 123 LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182
Query: 524 LAEALNEW---DGGLVLVSHDFRLIN 546
+AE +N D ++++H RL+N
Sbjct: 183 VAEGINRLREPDRSFLIITHYQRLLN 208
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD-MDMSALQYMI 454
+ LVG NG+GKSTL ++ G L P G V R+ + + L+ +L ++ + +
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLC 112
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ E + M I F G+ P+K S G R+++ F+ P +L++DE +
Sbjct: 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172
Query: 515 HLDI----ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEI-WV 554
D + +D + E E + + VSH+ + Q +I W+
Sbjct: 173 VGDQTFAQKCLDKIYE-FKEQNKTIFFVSHNLGQVRQFCTKIAWI 216
|
Length = 264 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 2e-07
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT------GDLVPLDGMVR---- 425
Y D I K++ + +S ++GP+G+GKSTLLK++ + +DG V
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 426 ---RHNHLRIAQ-----FHQ-----HLAEKLDMDMSALQYMIK---EYPGNEEEKMRAAI 469
+ + +++ + F Q HL+ ++ + IK E EE +R +
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRK-V 137
Query: 470 GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN 529
G + P LS GQ+ R+ A +P +LL+DEPT+ +DI ++ + +
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 530 EWDG--GLVLVSHDFRLINQVAHEIWVCENQAVTRW 563
E +V+VSH+ + + +VA + N + W
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233
|
Length = 257 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + R+A+ARAL NP +L+LDE T+ LD E+ +++ L + R ++VI+H
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 20/176 (11%)
Query: 72 DIRIESLSVTFHGHDLIVDSELELNY--GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL 129
+ I+ V+ D V + L G +GLLG NG GKST+ I + + D +
Sbjct: 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 130 EAVISCDEERLKLEKEAEILGAQEDGGGEQLER---------VYERLEALDASTAEKRAA 180
+ R +L + + Q D L+ V+ R + E A
Sbjct: 99 TVLGVPVPARARLARARIGVVPQFD----NLDLEFTVRENLLVFGRYFGMSTREIE---A 151
Query: 181 EILYGLGFNKTMQAKKTR--DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
I L F + R D SGG + R+ LARAL +P +L+LDEPT LD A
Sbjct: 152 VIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
|
Length = 340 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 366 VLQFVEVTFGYTPDN--LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
+++F V+F Y PD+ ++ F + S AL+G NG+GKST+ KL+ G L+P D
Sbjct: 5 IVEFKHVSFTY-PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD-- 61
Query: 424 VRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE--------------------EE 463
+ + +I L K D+ ++ + P N+
Sbjct: 62 ---NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRP 118
Query: 464 KM----RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI- 518
+M R + G+ P NLS GQ+ RV A + +P +++LDE T+ LD
Sbjct: 119 EMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 519 --ETIDSLAEALNEWDGGLVLVS--HDFRLINQVAH 550
E I L L + L ++S HD I++
Sbjct: 178 GKEQILKLIRKLKK-KNNLTVISITHD---IDEANM 209
|
Length = 282 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431
V+F Y DNL+ +N++ V VALVG G+GKSTL L+ G +G +R
Sbjct: 346 VSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405
Query: 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGN-------EEEKMRAAIGRFGLTGKAQVMPM- 483
+ H L + + M + + N EE++ A+ L A+ +P
Sbjct: 406 SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDG 465
Query: 484 ---------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
NLS GQ+ + A + + P +L+LDE T ++D T ++ +AL
Sbjct: 466 LYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519
|
Length = 592 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
++I L + G + D L L G +LG +GCGK+TLL I G +
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-----HG 56
Query: 132 VISCDEERLKLEKEAEILGAQEDG---GGEQLERVYERLEALDASTAEKR--AAEILYGL 186
I+ D + ++ + Q +G + V L+ ++ A ++L +
Sbjct: 57 SITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV 116
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
G + + + SGG R R+ +ARAL NP +LLLDEP LD
Sbjct: 117 GL-EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
|
Length = 255 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 52/198 (26%)
Query: 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVPLD 421
+F +V+F Y +++ F VA+VGP GAGKSTL+ L+ + +D
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 422 GM-VR-------RHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGNEEEKMRAA 468
G +R R N IA Q + + S I++ P +E+MRAA
Sbjct: 396 GTDIRTVTRASLRRN---IAVVFQ---DAGLFNRS-----IEDNIRVGRPDATDEEMRAA 444
Query: 469 IGRFGLTGKAQVM------PMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEP 512
R AQ P LS G+R R+ A + P +L+LDE
Sbjct: 445 AER------AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 513 TNHLDIETIDSLAEALNE 530
T+ LD+ET + AL+E
Sbjct: 499 TSALDVETEAKVKAALDE 516
|
Length = 588 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 36/209 (17%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+L +E+ F Y D + + + F + + L G NGAGK+TLLKL+ G L P G +
Sbjct: 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI- 58
Query: 426 RHNHLRIAQFHQHLAEKLDMDMSALQYM---------IKEYPGNEEE---KMRAAIGRFG 473
+ + D+ Q I Y E + + G G
Sbjct: 59 -----------LFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG 107
Query: 474 LTGKAQVMPMKN--------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETID 522
+T ++ +++ LS GQ+ +V L + + LLDEP LD + TI
Sbjct: 108 ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
Query: 523 SLAEALNEWDGGLVLVSHDFRLINQVAHE 551
+ + G ++L SH +N+ +E
Sbjct: 168 TKIQEHRAKGGAVLLTSHQDLPLNKADYE 196
|
Length = 200 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 50/187 (26%), Positives = 67/187 (35%), Gaps = 60/187 (32%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--- 121
+R E+LS + ++ L + G GLLG NG GK+T I G+I
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 122 ----------------------EASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQ 159
EAS L EE + +L + E+
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTV-----EENILA-----VLEIRGLSKKER 110
Query: 160 LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219
E++ E LE + K A L SGG R R+ +ARAL NP
Sbjct: 111 EEKLEELLEEFHITHLRKSKASSL-----------------SGGERRRVEIARALATNPK 153
Query: 220 ILLLDEP 226
LLLDEP
Sbjct: 154 FLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 98 GRRYGLLGLNGCGKST---LLTAIGEIEASDMS----SLEAVISCDEERL----KLEKEA 146
G +GLLG+NG GK+T +LT + + D + S+ IS + + + +
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAID 2024
Query: 147 EILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKK-TRDFSGGWR 205
++L G E L +Y RL + A EK A + LG ++ A + +SGG +
Sbjct: 2025 DLLT-----GREHL-YLYARLRGVPAEEIEKVANWSIQSLGL--SLYADRLAGTYSGGNK 2076
Query: 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV 262
+++ A AL P ++LLDEPT +D +A L T+ R +V+ SHS + +
Sbjct: 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEAL 2136
Query: 263 CTNIIHM 269
CT + M
Sbjct: 2137 CTRLAIM 2143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 58/199 (29%), Positives = 80/199 (40%), Gaps = 30/199 (15%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMV--------RRHNHLRIAQF- 435
V LD VAL+GP+G+GK+TLL+L+ G P G + R F
Sbjct: 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79
Query: 436 HQHLAEKLDMDMSALQ---YMIKEYPGNE-------EEKMRAAIGRFGLTGKAQVMPMKN 485
QH A L M+ + ++ P +E K+ + L A P +
Sbjct: 80 FQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ- 136
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLVSHD 541
LS GQR RV A +P +LLLDEP LD + L L L V V+HD
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 542 FRLINQVAHEIWVCENQAV 560
+VA + V +
Sbjct: 197 QEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-07
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 40/183 (21%)
Query: 102 GLLGLNGCGKSTLLTAIGEIEASDMSSL----------EAVISCDEERLKLEKEAEILGA 151
L+G +GCGKST L + + D+ ++ + + + ++L KE ++
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMN-DDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQ 92
Query: 152 QED----------------GGGEQLERVYERLE-ALDASTAEKRAAEILYGLGFNKTMQA 194
Q G + E + +R+E +L + K + L ++ QA
Sbjct: 93 QPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNL-----DRNAQA 147
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK--KFDRILVVI 252
FSGG + RI +ARAL + P ++LLDEPT+ LD + +EETL K +++
Sbjct: 148 -----FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMV 202
Query: 253 SHS 255
+H+
Sbjct: 203 THN 205
|
Length = 251 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 396 VALVGPNGAGKSTLL-----KLMTGDL----VPLDGMVRRHNHLR-IAQFHQ-------H 438
+A++G +GAGK+TL+ + G V L+GM +R I+ + Q
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 439 LAEKLDMDMSALQYMIKEYPGNEE-EKMRAAIGRFGLTGKAQVM-----PMKNLSDGQRS 492
L + + A M + E+ E++ + GL A +K LS G+R
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK 173
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLD 517
R+ FA P +L DEPT+ LD
Sbjct: 174 RLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 178 RAAEILYGLGF-NK------TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
AA + Y + F NK T+ + SGG R RIA+ARAL + IL+LDE T+ L
Sbjct: 452 EAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 231 DLEACVWLE---ETLKKFDRILVVISH 254
D E+ ++ + L+K +R +VI+H
Sbjct: 512 DTESERAIQAALDELQK-NRTSLVIAH 537
|
Length = 582 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-07
Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 34/150 (22%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK 455
+ +VGP G+GK+TL + + +L P G V +D + +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIY----------------IDGEDILEEV--- 45
Query: 456 EYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515
L + S R R+ A +P +L+LDE T+
Sbjct: 46 ---------------LDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSL 90
Query: 516 LDIETIDSLAEALNEWDGGLVLVSHDFRLI 545
LD E L L+ + +I
Sbjct: 91 LDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 186 LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245
G++ T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+ + +
Sbjct: 126 EGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184
Query: 246 --DRILVVISH 254
R +++I+H
Sbjct: 185 CAGRTVIIIAH 195
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 23/174 (13%)
Query: 366 VLQFVEVTFGYTPDN---LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
VL + +V N I ++ V+ +A++G +G+GK+TLL ++G V G
Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG-RVEGGG 61
Query: 423 MVR-----RHNHLRIAQFHQHLA--EKLDMDMS------ALQYMIK----EYPGNEEEKM 465
+ QF + +A + D+ + L Y + K
Sbjct: 62 TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
Query: 466 RAAIGRFGLTGKAQV--MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
R ++ +K +S G+R RV A P +L+LDEPT+ LD
Sbjct: 122 RVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVP------LDG--MVRRHNHLR-IAQFHQHLAEKLDMDMS 448
L+GP+G GK+TLL+L+ G P LDG + HLR I Q A L M+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMT 58
Query: 449 ALQYMIKEYP------GNEE--EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500
+ + + E ++ A+ L A P + LS GQ+ RV A
Sbjct: 59 VEENV--AFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVALARAL 115
Query: 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLVSHD 541
+P +LLLDEP + LD + D + L L V V+HD
Sbjct: 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 42/225 (18%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI----------GEI--E 122
I+ L V+ +++ L + G + ++G NG GKSTL I G I +
Sbjct: 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK 62
Query: 123 ASDMSSLEAVISCDEER------LKLEKEAEILGAQEDGGGEQLE------RVYERLEAL 170
D+ LE +ER L + EI G E L R E L
Sbjct: 63 GQDLLELEP-----DERARAGLFLAFQYPEEIPGVSNL---EFLRSALNARRSARGEEPL 114
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRD----FSGGWRMRIALARALFINPTILLLDEP 226
D K L LG ++ R FSGG + R + + + P + +LDE
Sbjct: 115 DLLDFLKLLKAKLALLGMDEEF---LNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171
Query: 227 TNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIH 268
+ LD++A + E + + DR ++I+H Q LN + + +H
Sbjct: 172 DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVH 216
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 153 EDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212
D E++ ER +A D E++ G++ T+ ++ R SGG R R+A+AR
Sbjct: 434 PDATDEEMRAAAERAQAHD--FIERKP------DGYD-TVVGERGRQLSGGERQRLAIAR 484
Query: 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
AL +P IL+LDE T+ LD+E ++ L + R +I+H
Sbjct: 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAH 528
|
Length = 588 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
PP+L ++ Y+ ++ K +DF + AL+G NGAGKSTL+K++ G + P G
Sbjct: 8 APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 423 MV----RRHNHLRIAQFHQ---HLAEKLDM---DMSALQYMIKEYPGNE--EEKMRAAIG 470
+ L A+ HQ +L + + ++S + ++ P + +KM+ +
Sbjct: 67 TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA 126
Query: 471 RFG----LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL---DIETIDS 523
G L A + ++D Q ++ + R +L+LDEPT L + E + S
Sbjct: 127 ALGCQLDLDSSAGSL---EVADRQIVEILRGLM--RDSRILILDEPTASLTPAETERLFS 181
Query: 524 LAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
L G+V +SH I Q+A I V
Sbjct: 182 RIRELLAQGVGIVFISHKLPEIRQLADRISV 212
|
Length = 510 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKS-TLLTAIGEIEASDMS 127
+ I +LSV FH V ++ G L+G +G GKS T L+ +G + + +
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 128 SLEAVISCD-EERLKLEKEA--EILGA------QEDGG--------GEQLERVYERLEAL 170
I D E+ L + + G QE G+QL V L
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRD-----FSGGWRMRIALARALFINPTILLLDE 225
+ A RA E+L +G + +K D SGG R R+ +A AL P +L+ DE
Sbjct: 127 SRAAARARALELLELVGIP---EPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADE 183
Query: 226 PTNHLDLE 233
PT LD+
Sbjct: 184 PTTALDVT 191
|
Length = 534 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 6e-07
Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 42/218 (19%)
Query: 361 KLPPPVLQFVEVTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP 419
L V+F Y + K L + +VAL+G G GKSTLL+L+T P
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 392
Query: 420 LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI--------------KE-----YPGN 460
G + N IA + + +AL+ I ++ P
Sbjct: 393 QQGEILL-NGQPIADYSE----------AALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441
Query: 461 EEEKMRAAIGRFGLTGKAQVMPMKN---------LSDGQRSRVVFAWLAYRQPHMLLLDE 511
+E + + + GL + N LS G++ R+ A +LLLDE
Sbjct: 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501
Query: 512 PTNHLDIETIDSLAEALNEWDGG--LVLVSHDFRLINQ 547
PT LD ET + E L E +++++H + Q
Sbjct: 502 PTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ 539
|
Length = 574 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 6e-07
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALV-GPNGAGKSTLLKLMTGDLVPLDGMV 424
+L ++ F NL ++ F L S + + G NG GKS+LL+++ G + P G +
Sbjct: 1 MLSLHQLQFNIEQKNLFDLSITF---LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
Query: 425 RRHNHLRIAQFHQ--------HLAEKLDMDM-SALQYMIKEYPGNEEEKMRAAIGRFGLT 475
N I + +L KL+M + L++ + Y N E + AAI F L
Sbjct: 58 YYKN-CNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKLH 114
Query: 476 GKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE--ALNEW 531
++ K +LS G + V A L Q + LLDE +L E D L +
Sbjct: 115 ---DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN 171
Query: 532 DGGLVLVS 539
GG+VL+S
Sbjct: 172 SGGIVLLS 179
|
Length = 195 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH----NHLRIAQFHQHL 439
L+F + R+ALVGP+GAGK++LL + G L P G ++ + L + +HL
Sbjct: 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425
Query: 440 AEKLDMDMSALQYMIKE-----YPGNEEEKMRAAIGRFGLTGKAQVMP----------MK 484
+ + + +++ P +E+++ A+ ++ ++P
Sbjct: 426 SW-VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA 484
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG--LVLVSHDF 542
LS GQ R+ A + +LLLDEPT LD + + +ALN ++V+H
Sbjct: 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH-- 542
Query: 543 RLINQVAH--EIWVCEN 557
+ +A +IWV ++
Sbjct: 543 -QLEDLAQWDQIWVMQD 558
|
Length = 588 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 98 GRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGG 156
G +LG +G GKSTLL A+ G I+ ++ + +++ + + K + Q+D
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTG--TILANNRKPTKQILKRTGFVTQDDIL 151
Query: 157 GEQLE----RVYERLEALDASTAEK---RAAE-ILYGLGF----NKTMQAKKTRDFSGGW 204
L V+ L L S ++ AE ++ LG N + R SGG
Sbjct: 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211
Query: 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL 242
R R+++A + INP++L+LDEPT+ LD A L TL
Sbjct: 212 RKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249
|
Length = 659 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 40/185 (21%)
Query: 361 KLPPPVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP 419
K +++ V+F Y N KN+ F ++ VA++G NG+GKST+ K++TG L P
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 420 LDGMVR-------RHN--HLR--IA--------QFHQHLAEKLDMDMSALQYMIKEYPGN 460
G ++ + N +R I QF E D A K+ P
Sbjct: 62 QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE----DDIAFGLENKKVP-- 115
Query: 461 EEEKMRAAIGRFGLTGKAQVMPMK--------NLSDGQRSRVVFAWLAYRQPHMLLLDEP 512
+KM+ I A+ + M+ NLS GQ+ RV A + P +++ DE
Sbjct: 116 -PKKMKDIIDDL-----AKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169
Query: 513 TNHLD 517
T+ LD
Sbjct: 170 TSMLD 174
|
Length = 271 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 41/185 (22%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-------------G 119
I + LSV F ++ +L + G GL+G NG GK+TLL AI
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 120 EIEASDMSSLEA---VISCDEE---------RLKLEKEAEILGAQEDGGGEQLERVYERL 167
+ +S+ A V S ++ R +E ++ D E ER
Sbjct: 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVER- 122
Query: 168 EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
A++ + + A + L SGG R R+ LARAL +LLLDEPT
Sbjct: 123 -AMERTGVAQFADRPVTSL--------------SGGERQRVLLARALAQATPVLLLDEPT 167
Query: 228 NHLDL 232
LD+
Sbjct: 168 ASLDI 172
|
Length = 402 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 31/159 (19%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149
D L+++ G +G +GCGKSTLL I +E D++S + I E+R+ AE
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--DITSGDLFI--GEKRMNDVPPAE-- 74
Query: 150 GAQEDGGGEQLE--------RVYE------RLEALDASTAEKR---AAEILYGLGFNKTM 192
G G + V E +L +R AE+L L +
Sbjct: 75 ----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQ-LA---HL 126
Query: 193 QAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+K + SGG R R+A+ R L P++ LLDEP ++LD
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 9e-07
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 37/205 (18%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDG----------MVR-RHNHLRIAQFHQ--HLAEK 442
++++G +G+GKST L+ + P +G +VR + L++A +Q L +
Sbjct: 34 ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93
Query: 443 LDM---------DMSALQYMIKEYP------GNEEEKMRAA--IGRFGLTGKAQVMPMKN 485
L M M+ L+ ++ E P +E + RA + + G+ +AQ +
Sbjct: 94 LTMVFQHFNLWSHMTVLENVM-EAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH 152
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS---LAEALNEWDGGLVLVSHDF 542
LS GQ+ RV A +P +LL DEPT+ LD E + + + L E +V+V+H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 543 RLINQVA-HEIWVCENQAVTRWEGD 566
V+ H I++ +Q EG
Sbjct: 213 GFARHVSSHVIFL--HQGKIEEEGA 235
|
Length = 257 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 201 SGGWRM------RIALARALFINPTILLLDEPTNHLDLEACVW-----LEETLKKFDRIL 249
SGG ++ R+ALA N IL LDEPT +LD E +EE + + L
Sbjct: 117 SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQL 176
Query: 250 VVISHSQDFLN 260
+VI+H ++ ++
Sbjct: 177 IVITHDEELVD 187
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 42/164 (25%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149
L + G L+G +GCGKSTLL I + + VI LE
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGL---AQPTSGGVI--------LE------ 45
Query: 150 GAQEDGGGEQLERVYERLEAL------------------DASTAEKRAAE----ILYGLG 187
G Q G V++ L D S +E+RA L GL
Sbjct: 46 GKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT 105
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
K+ SGG + R+A+ARAL I P +LLLDEP LD
Sbjct: 106 ---EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVP------LDGMVRRHNHLR------IAQFHQHLAEKLD 444
AL+G NGAGKSTLLK+++G+ P +DG R +A +Q L L
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQEL--HLV 91
Query: 445 MDMS-ALQYMIKEYPG-----NEEEKM---RAAIGRFGLTGKAQVMPMKNLSDGQRSRVV 495
+M+ A + + P N R + G+ P+K LS GQR V
Sbjct: 92 PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD-TPLKYLSIGQRQMVE 150
Query: 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVL-VSH 540
A R ++ DEPT+ L I+ L + E +G ++L VSH
Sbjct: 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 15/201 (7%)
Query: 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE----------IEASDMSSLEAVISCDE 137
+ D+ L + G + ++GL+G GKST++ + I+ D++ + +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 138 ERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKT 197
R K+ + L ++A ++A + L +G +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVIS 253
+ SGG R R+ LARAL INP ILL+DE + LD +++ L K R +V IS
Sbjct: 164 -ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 254 HSQDFLNGVCTNIIHMQNKQL 274
H D + I MQN ++
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEV 243
|
Length = 400 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 14/185 (7%)
Query: 98 GRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGG 156
G +LG NG GKSTL + G ++ S L D R L K E +G
Sbjct: 32 GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91
Query: 157 GEQL--ERVYERLE------ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI 208
QL VY+ + L KR L G ++ K T S G + R+
Sbjct: 92 DNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRV 150
Query: 209 ALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILVVISHSQDFLNGVCT 264
A+A L + P +L+LDEPT LD E L E K+ +++ +H D + C
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD 210
Query: 265 NIIHM 269
N+ M
Sbjct: 211 NVFVM 215
|
Length = 283 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQ 256
FSGG + R + + L + P + +LDEP + LD++A + E + K + +++I+H Q
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 257 DFLNGVCTNIIH 268
L+ + + +H
Sbjct: 165 RLLDYIKPDRVH 176
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 50/167 (29%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK 455
+ +VGPNG GK+T +K++ G L+P + + D Y
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNG-------------------DNDEWDGITPVY--- 65
Query: 456 EYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515
K Q + +LS G+ RV A R L DEP+ +
Sbjct: 66 ---------------------KPQYI---DLSGGELQRVAIAAALLRNATFYLFDEPSAY 101
Query: 516 LDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQ 558
LDIE + A A+ E ++V HD +++ ++ I V E +
Sbjct: 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILVVISHSQ 256
SGG + R+ALARAL + P ILLLDEP LD E WL + ++ V ++H Q
Sbjct: 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
+ V ++ M GN +Q
Sbjct: 198 EEAMEVADRVVVMSQ-------GNIEQ 217
|
Length = 353 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET---LKKFDRILVVISHS 255
SGG + R+ +ARAL + P +LL+DEPT+ LD + + +EE LKK +V+++H+
Sbjct: 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHN 207
|
Length = 253 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 52/223 (23%)
Query: 68 PLSRDIRIE-SLSVTFHGHDLIV-DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125
I ++ L F+G+ + V DS + + G +G +GCGKST+L ++
Sbjct: 2 VSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR----- 56
Query: 126 MSSLEAVISCDEERLKLEKEAEILGAQEDGGG-------EQLERVYERLEALDASTAEKR 178
M+ L + + E LG G G + V+++ S +
Sbjct: 57 MNDLV-------KGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNV 109
Query: 179 AAEILYGLGFNK-----------TMQAKKTRD------------FSGGWRMRIALARALF 215
A +GL N+ +Q D SGG + R+ +ARA+
Sbjct: 110 A----FGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165
Query: 216 INPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHS 255
P +LLLDEP + LD A +EE LKK D + +++H+
Sbjct: 166 TEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL----KKFDRILVVIS 253
+ SGG + RIA+ARAL P ILLLDE T+ LD + +E+T+ K D+ ++ I+
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 254 HSQDFLNGVCTNIIHMQNKQLKF----YTGNFDQYVQTRSELEENQMKQYK 300
H I +K + F TG+F Q T EL Q YK
Sbjct: 1417 HR--------IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYK 1459
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 98 GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDG-- 155
G ++G GCGKS+LL+A+ ++M +E + + ++A I Q D
Sbjct: 664 GALVAVVGQVGCGKSSLLSAL----LAEMDKVEGHVHMKGSVAYVPQQAWI---QNDSLR 716
Query: 156 ----GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209
G+ L Y + LEA A EIL ++T +K + SGG + R++
Sbjct: 717 ENILFGKALNEKYYQQVLEA----CALLPDLEIL--PSGDRTEIGEKGVNLSGGQKQRVS 770
Query: 210 LARALFINPTILLLDEPTNHLD-------LEACVWLEETLKKFDRILVVISHSQDFLNGV 262
LARA++ N I L D+P + +D E + E LK RILV +H +L V
Sbjct: 771 LARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV--THGISYLPQV 828
Query: 263 CTNIIHMQNK--------QLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKE 311
I+ K +L G F ++++T + E+ + W KE
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKE 885
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 56/215 (26%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCDEERLK 141
+ +E+ G GL+G G GKSTL+ + G+I + + + + R K
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 142 ----------------LEKEAEI----LGAQEDGGGEQLERVYERLEALDASTAEKRAAE 181
+EK+ LG E+ E RV + +
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEE---EIENRVKRAMNIV----------- 130
Query: 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET 241
GL + + K + SGG + R+A+A + + P IL+LDEPT LD + +E
Sbjct: 131 ---GLDYE-DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG---RDEI 183
Query: 242 L-------KKFDRILVVISHSQDFLNGVCTNIIHM 269
L K+++ ++++SHS + + + II M
Sbjct: 184 LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM 218
|
Length = 287 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 374 FGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA 433
F + N++ + +VG G GKS+LL + G++ L+G V N
Sbjct: 8 FSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE 67
Query: 434 QFHQ-----------HLAEK-LDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM 481
+ + A+K ++ + + + P N++ + +A L ++
Sbjct: 68 PSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQ-RYKAVTDACSLQPDIDLL 126
Query: 482 PMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA---- 527
P NLS GQR R+ A Y+ +++ LD+P + LDI D L +
Sbjct: 127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186
Query: 528 -LNEWDGGLVLVSHDFRLINQVAHEIWV 554
L + LVLV+H + + H W+
Sbjct: 187 FLQDDKRTLVLVTHKLQYL---PHADWI 211
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 52/246 (21%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL--- 129
I IE++S ++ ++ D L++ G ++G NG GKSTLL+ + + D +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 130 -EAVISCDEERLKLEKEAEILGAQED------------GGG-----------EQLERVYE 165
+ S + +L K+ IL QE+ G G E + E
Sbjct: 62 GLELTSTPSK--ELAKKLSIL-KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225
+E L R + L SGG R R +A L + +LLDE
Sbjct: 119 AIEYLHLEDLSDRYLDEL-----------------SGGQRQRAFIAMVLAQDTDYVLLDE 161
Query: 226 PTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281
P N+LD++ V + + L++ + +VV+ H +F + +I+ ++N ++ G+
Sbjct: 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV-VKQGSP 220
Query: 282 DQYVQT 287
D+ +Q
Sbjct: 221 DEIIQP 226
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR-RHN-------------- 428
KN+ V+ VAL GP+GAGKSTLLK + + +P G + RH
Sbjct: 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREV 84
Query: 429 -HLR------IAQFHQHLAEK--LDMDMSALQYMIKEYPGNEEEKMRAAIG----RFGLT 475
+R ++QF + + L++ L G E RA R +
Sbjct: 85 LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-----GVPREAARARARELLARLNIP 139
Query: 476 GKAQVMPMKNLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG- 533
+ +P S G++ RV A P +LLLDEPT LD + E + E
Sbjct: 140 ERLWHLPPATFSGGEQQRVNIARGFIADYP-ILLLDEPTASLDAANRQVVVELIAEAKAR 198
Query: 534 --GLVLVSHDFRLINQVA 549
L+ + HD + VA
Sbjct: 199 GAALIGIFHDEEVRELVA 216
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 71/210 (33%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDL--------VPLDGM------------- 423
GV+L + A++GPNG+GKSTL + G + DG
Sbjct: 22 GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81
Query: 424 --------------VRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAI 469
V + LR A + A + + ++++
Sbjct: 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEF--------------IKELKEKA 127
Query: 470 GRFGLTGKAQVMPMK--------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
G + + S G++ R L +P + +LDEP + LDI+ +
Sbjct: 128 ELLG-------LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDAL 180
Query: 522 DSLAEALNEW---DGGLVLVSHDFRLINQV 548
+AE +N G+++++H RL++ +
Sbjct: 181 KIVAEGINALREEGRGVLIITHYQRLLDYI 210
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 101 YGLLGLNGCGKSTLLTAIG---EIEASDMSSLEAVISCDEE-----RLKLEKEAEILGAQ 152
+G++G +G GKSTLL + EI S + V+ ++ +KL KE ++ Q
Sbjct: 39 FGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQ 98
Query: 153 EDGGGEQLERVYERLEALDASTAEKRAAEI-------LYGLGFNKTMQAK---KTRDFSG 202
+ +Y+ + S K EI L +G K + + SG
Sbjct: 99 PNPFPHL--SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSG 156
Query: 203 GWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR--ILVVISHSQDFLN 260
G + R+ +ARAL + P +LL+DEPT+ +D+ +E+ + + +V++SH+ +
Sbjct: 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVA 216
Query: 261 GVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEE 293
V + + N +L + + + + ++EL E
Sbjct: 217 RVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 29/180 (16%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG----------------MVRRH 427
K ++ + ++L+G +G GKSTLL L++G P G MV
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQ 61
Query: 428 NH--LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
N+ L +++A +D L + K + I GLT A P +
Sbjct: 62 NYSLLPWLTVRENIALAVD---RVLPDLSK---SERRAIVEEHIALVGLTEAADKRPGQ- 114
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGLVLVSHD 541
LS G + RV A +P +LLLDEP LD T +L E L E +++V+HD
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTA-IGEIEASDMSSL----EAVISCDEERLKLEKEAE 147
L L G G++G +GCGKST A IG ++A+D + + D+E + + +
Sbjct: 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ 101
Query: 148 ILGAQE------------DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAK 195
++ Q+ + E L + +L + R ++ +G + +
Sbjct: 102 MI-FQDPLASLNPRMTIGEIIAEPLRTYHPKL---SRQEVKDRVKAMMLKVGLLPNLINR 157
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD--LEACV--WLEETLKKFDRILVV 251
+FSGG RI +ARAL + P +++ DEP + LD ++A V L++ ++ L+
Sbjct: 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217
Query: 252 ISH 254
I+H
Sbjct: 218 IAH 220
|
Length = 331 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK--KFDRILVVISH 254
SGG + R+ +ARA+ + P ILL+DEP + LD + + LEET+ K + +++++H
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLL-TAIGEIEASDMSSLEA 131
+ E+L+ ++ ++ D LE+N G GLLG NG GK+T +G +
Sbjct: 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-----SG 59
Query: 132 VISCDEE---RLKLEKEAEILG----AQEDGGGEQLERVYERLEAL------DASTAE-- 176
I D+E +L + K A LG QE +L V + + A+ D AE
Sbjct: 60 KILLDDEDITKLPMHKRAR-LGIGYLPQEASIFRKLT-VEDNIMAVLEIREKDLKKAERK 117
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226
+ +L ++ K SGG R R+ +ARAL NP +LLDEP
Sbjct: 118 EELDALLEEFHI-THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
S A+K A L +G + + + SGG + R+A+A L I P IL+ DEPT LD
Sbjct: 150 SEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209
Query: 233 EA---CVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ + L K ++ + VI+H+ + + V +I M ++
Sbjct: 210 KGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
|
Length = 320 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEA 123
I E+++ + G V++ LE+ G L+G +G GK+T + I GEI
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 124 SDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEK 177
E + D L+ + I Q+ G + V E +L +
Sbjct: 61 DG----EDIREQDPVELRRKIGYVI---QQIGLFPHM-TVEENIALVPKLLKWPKEKIRE 112
Query: 178 RAAEILYGLGFN-KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
RA E+L +G + + + SGG + R+ +ARAL +P +LL+DEP LD
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-06
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 45/180 (25%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVP----------LDGMVRRHNHLRIAQFHQHLAEKLDM 445
++GPNG GK+T +K+++G+L+P D +++ R + + + +
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLK---RFRGTELQNYFKKLYNG 158
Query: 446 DMSAL---QY--MI-KEYPGN---------EEEKMRAAIGRFGLTGKAQVM--PMKNLSD 488
++ + QY +I K + G E K+ + R GL ++ + LS
Sbjct: 159 EIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLE---NILDRDISELSG 215
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDI-------ETIDSLAEALNEWDGGLVLVSHD 541
G+ RV A R DEPT++LDI I LAE +++V HD
Sbjct: 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-----GKYVLVVEHD 270
|
Length = 590 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKST----LLKLMTG------DLVPLDGMVRRHN- 428
N++ KN+ F + + LVG +G+GKST LL+L+ D PL + RR
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLL 358
Query: 429 --HLRIAQFHQHLAEKLDMDMSALQYMIKE-----YP----GNEEEKMRAAIGRFGLTGK 477
RI Q L+ ++ LQ +I+E P E+++ A + GL +
Sbjct: 359 PVRHRIQVVFQDPNSSLNPRLNVLQ-IIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE 417
Query: 478 AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDG- 533
+ S GQR R+ A +P +++LDEPT+ LD I +L ++L +
Sbjct: 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQL 477
Query: 534 GLVLVSHDFRLINQVAHEIWV 554
+ +SHD ++ + H++ V
Sbjct: 478 AYLFISHDLHVVRALCHQVIV 498
|
Length = 529 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 52/171 (30%)
Query: 98 GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGG 157
G ++G G GK+TL A+
Sbjct: 2 GEVILIVGPPGSGKTTLARALAR------------------------------------- 24
Query: 158 EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217
+L + +D + + L + K SG R+R+ALA A +
Sbjct: 25 -ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGG-----KKASGSGELRLRLALALARKLK 78
Query: 218 PTILLLDEPTNHLD---------LEACVWLEETLKKFDRILVVISHSQDFL 259
P +L+LDE T+ LD LE L + + +++ ++ + L
Sbjct: 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEETLKKFDRILVVISHSQ 256
SGG + R+A+ RAL P +LL+DEP LDL E +LE ++ + ++ +SHS
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189
Query: 257 D 257
D
Sbjct: 190 D 190
|
Length = 352 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL----- 417
P VL V++ D I NL + V+ +VGPNGAGKSTLL L+TGD
Sbjct: 259 PRIVLNNGVVSYN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYS 315
Query: 418 --VPLDGMVRRHNHLRIAQFHQHL---AEKLDMD----MSALQYMIKEY----------P 458
+ L G RR + I +H+ + L +D S ++ +
Sbjct: 316 NDLTLFGR-RRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS 374
Query: 459 GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+++ + + G+ + P +LS GQ+ + + P +L+LDEP LD
Sbjct: 375 DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-06
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFL 259
SGG + R+A AR L P + LDE T+ LD E+ L + LK+ ++ + H
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW 151
Query: 260 N 260
Sbjct: 152 K 152
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 20/176 (11%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152
+ G LLG NG GKSTL I + E +K +K++ + +
Sbjct: 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKYDKKSLLEVRK 78
Query: 153 EDG-----GGEQL--ERVYERLE------ALDASTAEKRAAEILYGLGFNKTMQAKKTRD 199
G +QL V E + L EKR E L +G + + K
Sbjct: 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM-EGFENKPPHH 137
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR--ILVVIS 253
SGG + R+A+A L + P I++LDEPT+ LD + + L ++ I ++IS
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIS 193
|
Length = 275 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 30/201 (14%)
Query: 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDGMVRRHNHLRI------- 432
DF + A+ G +G+GK+TL++L+ G P L+G + I
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 433 --------AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK 484
A+ HL+ + L+Y +K +E + G
Sbjct: 76 RIGYVFQEARLFPHLSVR-----GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG 130
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLVLVSH 540
LS G++ RV P +LL+DEP LD E + L E+ ++ VSH
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 541 DFRLINQVAHEIWVCENQAVT 561
+ + ++A + V E+ V
Sbjct: 191 SLQEVLRLADRVVVLEDGRVA 211
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 30/172 (17%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQH----------------- 438
V L+GPNGAGK+T ++ G + P G + + I + H
Sbjct: 29 VGLLGPNGAGKTTTFYMIVGLVKPDSGKILL-DGQDITKLPMHKRARLGIGYLPQEASIF 87
Query: 439 ----LAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494
+ E + ++ L+ EEK+ + F +T + LS G+R RV
Sbjct: 88 RKLTVEENI---LAVLEIRGLSK-KEREEKLEELLEEFHITHLRKSKASS-LSGGERRRV 142
Query: 495 VFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAEALNEWDGGLVLVSHDFR 543
A P LLLDEP +D ++ I + + L + G+++ H+ R
Sbjct: 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK--KFDRILVVISHS 255
SGG + R+ +AR L +P I+LLDEPT+ LD + +EETL K D +++++ S
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS 206
|
Length = 252 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 45/215 (20%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--------------VPLDGM-V 424
I ++L ++ AL+G NGAGKSTLLK + GDL V L+G +
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 425 RRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE------YP-----GNEEEKMRAAIGR-F 472
+ R+A+ L + A + +E YP G + +
Sbjct: 74 AAIDAPRLARLRAVLPQAAQ---PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQAL 130
Query: 473 GLTGKAQVM--PMKNLSDGQRSRVVFAWL---------AYRQPHMLLLDEPTNHLDI--- 518
L G ++ + LS G+ +RV FA + A + P LLLDEPT LD+
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 519 -ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEI 552
+D++ +W+ G++ + HD L + A I
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225
|
Length = 272 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + R+A+ARA+ NP ILLLDE T+ LD ++ L+ R +VI+H
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 45/204 (22%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG----------- 415
L+ V +G + + + L+GP+G GK+TLL+L+ G
Sbjct: 3 LENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 416 ---DLVPLD------GMVRRH----NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE- 461
D+ L V ++ HL + + ++A L + K+ P E
Sbjct: 60 DGKDITNLPPHKRPVNTVFQNYALFPHLTVFE---NIAFGLRL---------KKLPKAEI 107
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
+E++ A+ L G A P + LS GQ+ RV A +P +LLLDEP LD++
Sbjct: 108 KERVAEALDLVQLEGYANRKPSQ-LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 522 DSLAEALNEWDGGL----VLVSHD 541
+ L L V V+HD
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHD 190
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-06
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 34/171 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ L+ L V+ E+ G G++G NG GK+T + G ++
Sbjct: 341 VEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-------- 391
Query: 132 VISCDEERLKLE-----KEAEILGAQEDGGGEQLERVYERL----EALDASTAEKRAAEI 182
DE + E K I + V + L + L +S + +EI
Sbjct: 392 ----DEGEVDPELKISYKPQYIKPDYD-------GTVEDLLRSITDDLGSSYYK---SEI 437
Query: 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE 233
+ L + + K +D SGG R+A+A L + + LLDEP+ HLD+E
Sbjct: 438 IKPLQLERLLD-KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487
|
Length = 590 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 27/188 (14%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-RIAQFH----QHLAE----KLDMDM 447
A VG NG+GKS L + + G+L L G R + I + Q L + + DM
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSG--ERQSQFSHITRLSFEQLQKLVSDEWQRNNTDM 90
Query: 448 ----------SALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497
+ + + E + A FG+T K LS G+ + +
Sbjct: 91 LSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQ--FGITALLD-RRFKYLSTGETRKTLLC 147
Query: 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG---LVLVSHDFRLINQVAHEIWV 554
+P +L+LDEP + LD+ + LAE L LVLV + F I V
Sbjct: 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGV 207
Query: 555 CENQAVTR 562
+ +
Sbjct: 208 LADCTLAE 215
|
Length = 490 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 5e-06
Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 56/227 (24%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I ++++S F + + L + G +G++G +G GKSTL+ I +E
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGGGEQLER-----------------VYE------ 165
V+ ++ L + R V++
Sbjct: 62 ---VLVDGQDLTAL-----------SEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107
Query: 166 RLEALDASTAEKRAAEIL--YGLGFNKTMQAKKTR---DFSGGWRMRIALARALFINPTI 220
L + + R E+L GL K R SGG + R+A+ARAL NP +
Sbjct: 108 ELAGTPKAEIKARVTELLELVGL------SDKADRYPAQLSGGQKQRVAIARALASNPKV 161
Query: 221 LLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQDFLNGVC 263
LL DE T+ LD + E LK +R L V+I+H D + +C
Sbjct: 162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRIC 208
|
Length = 343 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 459 GNEEEKMRAAIGRFGLTG------KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512
GN++ + + AI G + V P + LS G RV+ A +P +L+ DEP
Sbjct: 122 GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ-LSGGMSQRVMIAMAIACRPKLLIADEP 180
Query: 513 TNHLDI----ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
T LD+ + I+ L E + + LVL++HD L+ + AH+I V
Sbjct: 181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIV 226
|
Length = 326 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 190 KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---- 245
+T+ SGG + RI++ARA+ NP IL+LDE T+ LD ++ +++T+
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 246 DRILVVISH 254
+RI ++I+H
Sbjct: 630 NRITIIIAH 638
|
Length = 1466 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 48/198 (24%)
Query: 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLL-------KLMTGDLV 418
++F V+ Y P+ + KN+ F + +V +VG G+GKS+LL +L +G ++
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 419 PLDGM----VRRHNHLR-----IAQ----FHQHLAEKLDMDMSALQYMIKEYPGNE--EE 463
+DG+ + H+ LR I Q F + LD P E +E
Sbjct: 63 -IDGVDISKIGLHD-LRSRISIIPQDPVLFSGTIRSNLD-------------PFGEYSDE 107
Query: 464 KMRAAIGRFGLTGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513
++ A+ R GL + +P NLS GQR + A R+ +L+LDE T
Sbjct: 108 ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT 167
Query: 514 NHLDIETIDSLAEALNEW 531
+D ET + + + E
Sbjct: 168 ASVDPETDALIQKTIREA 185
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 48/237 (20%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
P+L ++ Y P +++ F + + +VG +G+GK+TLLK ++G L P G
Sbjct: 3 DKPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 423 MVRRHNHLRIAQF----------------------HQHLAEKLDMDMSA-------LQYM 453
V +R Q HQ+ + L M +SA L +
Sbjct: 62 TV--TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAI 119
Query: 454 IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK------NLSDGQRSRVVFAWLAYRQPHML 507
+ GN +RA + + ++ + S G + R+ A +P ++
Sbjct: 120 GARHYGN----IRAEAQDW--LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLV 173
Query: 508 LLDEPTNHLDIET----IDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
+DEPT LD+ +D L + E +V+V+HD + +A + V + V
Sbjct: 174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230
|
Length = 258 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 32/176 (18%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK------------- 442
+AL+G +G+GKSTLL ++ G LD L HQ E
Sbjct: 39 IALIGESGSGKSTLLAILAG----LDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94
Query: 443 ----LDMDMSALQ------YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492
L ++AL+ + E +A + + GL + +P + LS G++
Sbjct: 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQ 153
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGLVLVSHDFRL 544
RV A +P +L DEPT +LD +T D +A+ L E L+LV+HD +L
Sbjct: 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209
|
Length = 228 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 6e-06
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEI-EASDMSSLEAVISCDEERLKLEKEAEILGA 151
L++ G L+G +GCGK+T L AI + + + + + I D + + + +
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84
Query: 152 QEDG-------------------GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM 192
+ G G +L + +R ++ + R A + + K
Sbjct: 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDR 141
Query: 193 QAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRI--LV 250
SGG + R+ +ARAL + P ILL+DEPT+ LD + +E+ + ++ ++
Sbjct: 142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTII 201
Query: 251 VISHS 255
+++H+
Sbjct: 202 IVTHN 206
|
Length = 252 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 15/253 (5%)
Query: 310 KEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQF 369
K YI RF G +A +E+ K +D+ LP
Sbjct: 325 KRYIDRF-VGEDPMAYPHLLLAPRYRMVEKLEGPIKFKNVTKTFASELDIKGLPNEFQDI 383
Query: 370 VEVTFGYTPDNL---IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
+E +FG + + +NL+ + VA+VG +GAGK+TLL+++ G R
Sbjct: 384 LE-SFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYR 442
Query: 427 HNHLRIAQFHQHLAEKL--DMDMSALQYMIKEYPGNEEEKMRAAIG---RFGLTGKA-QV 480
+ ++ ++ + + + + I E+ ++ + AA+ R GL+
Sbjct: 443 PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYR 502
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA----EALNEWDGGLV 536
LS GQ+ R A L +P++LL+DE HLD T +A E E L+
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 537 LVSHDFRLINQVA 549
+V+H + N +
Sbjct: 563 VVTHRPEVGNALR 575
|
Length = 593 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR--ILVVI 252
K SGG + R+ +ARAL + P ++LLDEPT+ LD A +E+ L++ +V++
Sbjct: 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIV 201
Query: 253 SHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMK 297
+H+ I + + Y G +Y TR +E + K
Sbjct: 202 THN-------IGQAIRIADYIAFMYRGELIEYGPTREIVERPKNK 239
|
Length = 250 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ IE ++ +F + + E+ G +GLLG NG GK+T I G +E + E
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-----EG 57
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRAAEIL-- 183
I+ + L E + I E+ G V + L+ + + +K+ L
Sbjct: 58 EITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLER 117
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ KT KK ++ S G + +I A+ P +L+LDEP + LD
Sbjct: 118 LEIVGKKT---KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162
|
Length = 300 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 6e-06
Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 50/243 (20%)
Query: 84 GHDLIVDSELELNYGRRYGLLGLN---------------GCGKSTLLTAIGE-------- 120
+I S++ L YG+ L G++ GCGKST L +
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 121 -IEASDMSSLEAVISCDEERLKLEKEAEILGAQEDG----------GGEQLERVYERLEA 169
I + + + + +E+ ++L K+ ++ Q + G +L V ++
Sbjct: 62 TITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVL 121
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
+A + A I + K + SGG + R+ +AR L + P ++LLDEPT+
Sbjct: 122 DEAVETSLKQAAIWDEV---KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178
Query: 230 LDLEACVWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285
LD + +E L ++ ILV S Q + +K F TGN ++
Sbjct: 179 LDPISSTQIENMLLELRDQYTIILVTHSMHQ---------ASRISDKTAFFLTGNLIEFA 229
Query: 286 QTR 288
T+
Sbjct: 230 DTK 232
|
Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 42/180 (23%)
Query: 102 GLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLE-KEAEILG---AQEDGGG 157
LLG NG GKSTL M L + D ++++ KE I A G G
Sbjct: 34 ALLGENGAGKSTL-----------MKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82
Query: 158 ---------EQLERVYE---------RLEALDASTAEKRAAEI--LYGLGFNKTMQAKKT 197
L V E + +D A R E+ YGL + K
Sbjct: 83 MVHQHFMLVPTLT-VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD---AKV 138
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISH 254
D S G + R+ + +AL+ +L+LDEPT L + L E L++ + ++ I+H
Sbjct: 139 ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
|
Length = 501 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQF 435
Y N + K +D + + AL+GP+G GKSTLL+ L+ L+ R +R+
Sbjct: 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGR 71
Query: 436 HQHLAEKLDMDMSALQYMIKEYP-------------------------GNEEEKMRAAIG 470
+ + + +++ M+ +YP +E++ A+
Sbjct: 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131
Query: 471 RFGL----TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
+ L + P NLS GQR R+V A +P +LL+DEPT ++D + E
Sbjct: 132 KAALWDEVKDRLNDYP-SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 527 ALNEW--DGGLVLVSH 540
L E + +VLV+H
Sbjct: 191 LLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 26/189 (13%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-------LDG 422
V +FG D N+ F V L+GPNGAGK+T +++ G L P G
Sbjct: 8 VTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGG 64
Query: 423 MVRRHNHLRIAQFHQHLAEK--LDMDMS---ALQYM--IKEYPGNE-EEKMRAAIGRFGL 474
+ + RI +L E+ L M+ L+Y+ +K P E ++K++A + R +
Sbjct: 65 PLSQEIKNRIG----YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI 120
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA---LNEW 531
GK + +K LS G + ++ F +P +L+LDEP + LD ++ L +A L E
Sbjct: 121 VGK-KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 532 DGGLVLVSH 540
++ SH
Sbjct: 180 GATIIFSSH 188
|
Length = 300 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 121/558 (21%), Positives = 219/558 (39%), Gaps = 114/558 (20%)
Query: 75 IESLSVTFHGHDLIVDS----ELELNYGRRYGLLGLNGCGKS-TLLTAIGEIEASDMSSL 129
+E+L++ F + + L G ++G +G GKS T L + +E +
Sbjct: 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---- 70
Query: 130 EAVISCDEERLKLEKEAEI-LGAQEDGG--------------------------GEQLE- 161
++ CD+ L+ I L Q GEQ+
Sbjct: 71 -GLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAE 129
Query: 162 --RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219
R+++ +A KR + + + +T+ ++ SGG R R+ +A AL P
Sbjct: 130 SIRLHQGASREEAMVEAKRMLDQVR-IPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188
Query: 220 ILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQDFLNGVCTNIIHMQNKQLK 275
+L+ DEPT LD+ + + +K + + + I+H GV I ++ L
Sbjct: 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM----GVVAEI---ADRVLV 241
Query: 276 FYTGNFDQYVQTRSELEENQMKQYKWEQE------QIASMK--EYIARFGHGSAKLA--R 325
Y G + V+T S + Q+ + + Q+ +MK +Y RF S + +
Sbjct: 242 MYQG---EAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQ 298
Query: 326 QAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKN 385
+ ++ T+ E +++ + LV RF L V + V +
Sbjct: 299 EPPIEQDTVVD------GEPILQVRNLVTRFPLRSGLLNRVTREVHAV----------EK 342
Query: 386 LDFGVDLDSRVALVGPNGAGKST----LLKL--MTGDLVPLDGMVRRHNHL--------- 430
+ F + ++LVG +G+GKST LL+L G + +G +R + L
Sbjct: 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG--QRIDTLSPGKLQALR 400
Query: 431 RIAQF-HQHLAEKLDMDMSALQYMIKE-------YPGNEEEKMRAA--IGRFGLTGKAQV 480
R QF Q LD + + I E PG + R A + R GL +
Sbjct: 401 RDIQFIFQDPYASLDPRQT-VGDSIMEPLRVHGLLPG-KAAAARVAWLLERVGLLPEHAW 458
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLV 536
S GQR R+ A P +++ DE + LD+ + I+ L + ++ +
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 537 LVSHDFRLINQVAHEIWV 554
+SHD ++ +++H + V
Sbjct: 519 FISHDMAVVERISHRVAV 536
|
Length = 623 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 13/74 (17%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQD 257
SGG + R+ +ARAL + P +LL+DEPT+ LD + + +EE LKK I++V + Q
Sbjct: 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQ 207
Query: 258 ----------FLNG 261
FLNG
Sbjct: 208 ASRISDKTAFFLNG 221
|
Length = 250 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 388 FGVDLDSRVALVGPNGAGKSTLLKLMTG--------------DLVPLDGMVRRHNHLRIA 433
FGV +G +GAGKSTL++ + DL L R +I
Sbjct: 34 FGV--------IGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIG 85
Query: 434 QFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDG 489
QH L+ + D AL + P E + ++ + GL+ KA P LS G
Sbjct: 86 MIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-AQLSGG 144
Query: 490 QRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDSLAEAL---NEWDGGL--VLVSHDFR 543
Q+ RV A LA P +LL DE T+ LD T S+ E L N + GL VL++H+
Sbjct: 145 QKQRVAIARALASN-PKVLLCDEATSALDPATTRSILELLKDINR-ELGLTIVLITHEMD 202
Query: 544 LINQVAHEIWVCEN 557
++ ++ + V +
Sbjct: 203 VVKRICDRVAVIDA 216
|
Length = 343 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 45/175 (25%)
Query: 81 TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL 140
F + +I + L + G LLG +GCGK+T+L + +E E I D E +
Sbjct: 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE----KPTEGQIFIDGEDV 70
Query: 141 KLE--KEAEI----------------------LGAQEDGGGEQLERVYERLEALDASTAE 176
++ +I L E+ +RV E LE +D + E
Sbjct: 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE 130
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
R + SGG + R+ALARAL + P +LL DEP ++LD
Sbjct: 131 DRYVD-----------------QISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 8e-06
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK--KFDRILVVISHSQ 256
+ SGG + R+ +ARA+ + PT+LL+DEP + LD A +E ++ K + ++V++HS
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 257 DFLNGVCTNIIHMQNKQL 274
V + Q+ ++
Sbjct: 209 KQAKKVSDRVAFFQSGRI 226
|
Length = 251 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 29/183 (15%)
Query: 386 LDF-GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK-- 442
+DF G+D + + GP GAGKST+L +T L G R+ + E
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAIT---YALYGKTPRYGRQENLRSVFAPGEDTA 76
Query: 443 ---LDMDMSALQYMIKEYPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498
+ +Y ++ G + ++ R + G + P+ LS G+ +
Sbjct: 77 EVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLS- 135
Query: 499 LAYRQPHM-----------LLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQ 547
LA + L +DE LD E ++++A AL + + R++
Sbjct: 136 LALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL-------IRTENRMVGV 188
Query: 548 VAH 550
++H
Sbjct: 189 ISH 191
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 9e-06
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA-VISCDEERLKLEKEAEILG 150
EL + G L+G +G GKSTLL + ++ D SS E ++ ++ E A+ L
Sbjct: 30 ELVVKRGETIALIGESGSGKSTLLAILAGLD--DGSSGEVSLVGQPLHQMDEEARAK-LR 86
Query: 151 AQEDGGGEQ----------LERVYERLEAL----DASTAEKRAAEILYGLGFNKTMQAKK 196
A+ G Q LE V L AL + + A +L LG K +
Sbjct: 87 AKHVGFVFQSFMLIPTLNALENV--ELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 197 TRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ SGG + R+ALARA P +L DEPT +LD
Sbjct: 145 AQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225
+ ++R L +G A + SGG + R+A+ARA+ +P +LL DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADE 163
Query: 226 PTNHLD 231
PT +LD
Sbjct: 164 PTGNLD 169
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 102 GLLGLNGCGKST---LLTAI-----GEIEASDMSSLEAVISCDEERLKLEKEAEILGAQE 153
G +G NG GK+T +L+ + GE+ + + + R K + ++ Q+
Sbjct: 51 GFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-------RRKKFLRRIGVVFGQK 103
Query: 154 D---------GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204
L +Y+ L + +KR E+ L + + R S G
Sbjct: 104 TQLWWDLPVIDSFYLLAAIYD----LPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQ 158
Query: 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILV 250
RMR +A AL P IL LDEPT LD+ A +E ++ F +
Sbjct: 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVA----QENIRNFLKEYN 200
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 40/222 (18%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+R E L++ + + + + +E+ G ++G NGCGKSTLL + + M+
Sbjct: 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL----MTPAHGH 63
Query: 133 ISCDEERLKLEKEAEIL--------GAQEDGGGEQLERVYE------------RLEALDA 172
+ D E ++ E+ A G E V R E +A
Sbjct: 64 VWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEA 123
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRD-FSGGWRMRIALARALFINPTILLLDEPTNHLD 231
T +A I T A ++ D SGG R R +A L I+LLDEPT LD
Sbjct: 124 VTKAMQATGI--------THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
Query: 232 LEACVWLEETLKKFDR----ILVVISHSQDFLNGVCTNIIHM 269
+ + L E L + +R L + H LN C H+
Sbjct: 176 ISHQIDLLELLSELNREKGYTLAAVLHD---LNQACRYASHL 214
|
Length = 265 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 32/206 (15%)
Query: 72 DIRIESLSVTFHGHDLIVDSELELNY--GRRYGLLGLNGCGKSTLLTAI--------GEI 121
D+ +++ + G D + L G L+G +G GKSTL+ I G+I
Sbjct: 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
Query: 122 EASDMSSLEAVISCDEERLKLEKEAEIL-----------GAQEDGGGEQLERVYERLEAL 170
+ ++ ++ L + +L G E ++ER A
Sbjct: 390 LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQ 449
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
D LG + + SGG R R+A+ARAL + IL+LDE T+ L
Sbjct: 450 DFVDKLP--------LGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSAL 500
Query: 231 DLEACVWLEETLKKF--DRILVVISH 254
D E+ ++ L++ R +VI+H
Sbjct: 501 DNESERLVQAALERLMQGRTTLVIAH 526
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + R+A+AR + NP IL+LDE T+ LD ++ L++ R +VI+H
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
|
Length = 497 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLVLVSHD 541
LS G+R RV+ A +P +L+ DEPT LD+ + + L E E + GL+ ++H+
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 542 FRLINQVAHEIWVCEN 557
++ ++A + V +N
Sbjct: 217 LSIVRKLADRVAVMQN 232
|
Length = 529 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVP---LDGMVRRHNHLRIAQFHQ- 437
K + ++ S VA +GP+G GKST L+L DL+P L+G +R + Q
Sbjct: 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79
Query: 438 -HLAEKLDMDMSA-----------LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
L + + M + Y ++ + +R + L G A +K+
Sbjct: 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE-TLKGAALWDEVKD 138
Query: 486 --------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGL 535
LS GQ+ R+ A P +LL+DEP + LD + + E ++E D +
Sbjct: 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTI 198
Query: 536 VLVSHDFRLINQVA 549
V+V+H+ + +V+
Sbjct: 199 VIVTHNMQQAARVS 212
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 46/168 (27%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-----------------DLVPLD 421
D +I K+++ + V VGP+G GKSTLL+++ G D+ P +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE 74
Query: 422 ---GMVRR----HNHLRIAQ---FHQHLA--EKLDMDMSALQYMIKEYPGNEEEKMRAAI 469
GMV + + HL +A+ F LA +K +++ +++
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEIN----------------QRVNQVA 118
Query: 470 GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
L P K LS GQR RV +P + LLDEP ++LD
Sbjct: 119 EVLQLAHLLDRKP-KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 32/206 (15%)
Query: 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE--- 122
+ + TF G + D + G+ + L+G NG GKSTLL + G I
Sbjct: 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG 65
Query: 123 -----ASDMSSLEAVISCDEERLKLEKE---AEILGAQEDGGGEQLERVYERLEALDAST 174
AS ++L A ++ + L L E AE L L ++ + ++
Sbjct: 66 QEMRFASTTAALAAGVAIIYQELHLVPEMTVAENL---------YLGQLPHKGGIVNRRL 116
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL---D 231
A E L LG + + S G R + +A+AL N ++ DEPT+ L +
Sbjct: 117 LNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175
Query: 232 LEACVWLEETLKKFDRILVVISHSQD 257
+E + L+ R+++ +SH +
Sbjct: 176 IEQLFRVIRELRAEGRVILYVSHRME 201
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 31/203 (15%)
Query: 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVP---------LDGMV 424
Y D I KN++ + +S AL+GP+G GKST ++ + DL+P LDG+
Sbjct: 12 YFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD 71
Query: 425 RRHNHLRIAQFHQHLA---------EKLDMDMSALQYMIKEYPGNE------EEKMRAAI 469
+ + + + + K D A I + EE ++AA
Sbjct: 72 IYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAA 131
Query: 470 GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDSLAE 526
+ K + LS GQ+ R+ A P ++L+DEP + LD I T I+ L
Sbjct: 132 LWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 527 ALNEWDGGLVLVSHDFRLINQVA 549
L E D +V+V+H+ + +V+
Sbjct: 191 KLKE-DYTIVIVTHNMQQATRVS 212
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 367 LQFVEVTFGYTPDNLIYK----NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
++F V + Y+P + K N+ F ++ S VALVG G+GKSTL++ L P G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 423 MV-------------------RRHNHLRIAQFHQ-HLAEKLDMDMSALQYMIKEYPGNEE 462
+ R+ L + QF + L E + + +++ K + +E+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSL-VFQFPEAQLFE--NTVLKDVEFGPKNFGFSED 119
Query: 463 EKMRAAIGRFGLTGKAQVMPMKN---LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE 519
E A+ G ++ + K+ LS GQ RV A + +P +L LDEP LD E
Sbjct: 120 EAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 520 TIDSLAEALNEWDGG---LVLVSHDFRLINQVAHEIWVCE 556
+ + ++ ++LV+H+ + + A ++ V E
Sbjct: 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLE 219
|
Length = 287 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISH 254
SGG + R+ +ARAL P +LL DEPT +LD E +E LKK D +V+++H
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 35/153 (22%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG---MVR---------------- 425
N++ V + S VA+VG G GK++L+ M G+L P ++R
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNAT 694
Query: 426 -RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK 484
R N L + F E+ +D++ALQ+ + PG + + IG G+
Sbjct: 695 VRDNILFGSPFDPERYERA-IDVTALQHDLDLLPGGDLTE----IGERGV---------- 739
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
N+S GQ+ RV A Y + + D+P + LD
Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
Length = 1622 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 38/273 (13%)
Query: 94 ELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCDEERLKLEKE 145
E+ G G++GLNG GKSTL I G ++ ++L A+ S +L +
Sbjct: 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIEN 105
Query: 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR 205
E+ G E+++ + + A+I G Q KT +S G +
Sbjct: 106 IELKGLMMGLTKEKIKEIIPEIIEF---------ADI--GKFIY---QPVKT--YSSGMK 149
Query: 206 MRIALARALFINPTILLLDEPTNHLD---LEACVWLEETLKKFDRILVVISHSQDFLNGV 262
R+ A ++ INP IL++DE + D + C+ K+ + + ISHS +
Sbjct: 150 SRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSF 209
Query: 263 CTNIIHMQNKQLKFYTGNFDQYVQTRSEL--EENQMKQYKWEQEQIASMKEYIARFGHGS 320
CT + + Q+K Y G+ + V E + NQM E++ +E I++F HG
Sbjct: 210 CTKALWLHYGQVKEY-GDIKEVVDHYDEFLKKYNQMS--VEERKDF--REEQISQFQHGL 264
Query: 321 AKLARQAQSKEKTLAKMERGGLTEKVVKDKVLV 353
+ + + +++ K K K +VL+
Sbjct: 265 LQEDQTGRERKRKKGKKTS----RKFKKKRVLI 293
|
Length = 549 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEALNEWDGGLVLVSHD 541
LS GQR RV+ A +P +L+ DEPT LD+ +D L E E ++ ++HD
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217
Query: 542 FRLINQVAHEIWV 554
++ + A ++V
Sbjct: 218 LGIVRKFADRVYV 230
|
Length = 534 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 94 ELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152
++ G+LG NG GK+T + + G ++ + + E + + + + A
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-------EIELDTVSYKPQYIKAD 73
Query: 153 EDGGGEQLERVYERLEALDAS--TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210
+G V + L ++ T EI L + + ++ + SGG R+A+
Sbjct: 74 YEG------TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAI 126
Query: 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFL 259
A L + I LLDEP+ +LD+E + + +++F ++ V+ H D +
Sbjct: 127 AACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH--DII 177
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 38/184 (20%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVP------LDGM------------VRRHNHLRIAQFHQHL 439
++G +G+GKSTLL+ + + P +DG +RR +I+ Q
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK---KISMVFQSF 111
Query: 440 AEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493
A L + L+ + ++ P E EE+ A+ GL G P LS G + R
Sbjct: 112 A--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQR 168
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHD----FRLI 545
V A P +LL+DE + LD E D L E +V ++HD RL
Sbjct: 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLG 228
Query: 546 NQVA 549
+++A
Sbjct: 229 DRIA 232
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
A+++A E++ +G + + A+ + SGG R+A+A L + P +L+LDEPT LD
Sbjct: 121 AKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP 419
P+L+ ++ GY + + V+ VAL+G NGAGK+TLLK + G LV
Sbjct: 2 PMLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG-LVR 54
|
Length = 237 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 40/180 (22%)
Query: 397 ALVGPNGAGKSTLLKLM----TGDLVP-------LDGMVRRHNHLRIAQFHQHLAEKLDM 445
+VG NGAGK+T+++ + TG+L P ++R AQ
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE--VRAQVKLAFENANGK 83
Query: 446 DMSALQYM-IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR-- 502
+ + + I E G + + S G++ V A L R
Sbjct: 84 KYTITRSLAILEN---------VIFCHQGESNWPLLDMRGRCSGGEK---VLASLIIRLA 131
Query: 503 -------QPHMLLLDEPTNHLDIETID-SLAEALNEWDGG----LVLVSHDFRLINQVAH 550
+L LDEPT +LD E I+ SLAE + E L++++HD L++ H
Sbjct: 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADH 191
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 41/186 (22%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLER 162
++G GCGKS+LL AI +M +LE + + + E E ++ +
Sbjct: 32 IVGQVGCGKSSLLLAI----LGEMQTLEGKVHWSN-KNESEPSFEATRSRNRY---SVAY 83
Query: 163 VYERLEALDASTAEKRAAEILYGLGFNK------------------------TMQAKKTR 198
++ L+A+ E I +G FNK T ++
Sbjct: 84 AAQKPWLLNATVEEN----ITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL-EETLKKF----DRILVVIS 253
+ SGG R RI +ARAL+ N I+ LD+P + LD+ L +E + KF R LV+++
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 254 HSQDFL 259
H +L
Sbjct: 200 HKLQYL 205
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 51/170 (30%)
Query: 384 KNLDFGVDLDSR----VALVGPNGAGKSTLLKLMTGDLVP---------LDGMVRRHNHL 430
K LD V L R V+L G NGAGKSTL+K+++G + P +G + +++
Sbjct: 19 KALD-NVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNI 76
Query: 431 R------IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTG------KA 478
R IA HQ LA L ++S L+ + + GNE I G+ +A
Sbjct: 77 RDTERAGIAIIHQELA--LVKELSVLENI---FLGNE-------ITPGGIMDYDAMYLRA 124
Query: 479 QVM------------PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
Q + P+ NL GQ+ V A +Q +L+LDEPT L
Sbjct: 125 QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
|
Length = 506 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
A+KRAA+ + +G +++ + + SGG + R+ALA L + P L+ DEPT LD +
Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 235 CVWLEETLKKFDRI------LVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF----DQY 284
++E L+ FD + +++++H D N++ + + F G D Y
Sbjct: 201 ---VKEILEIFDNLNKQGKTIILVTHDLD-------NVLEWTKRTIFFKDGKIIKDGDTY 250
Query: 285 VQTRSE--LEENQMK 297
L EN M+
Sbjct: 251 DILSDNKFLIENNME 265
|
Length = 305 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I+++ LS ++ I +++ + ++G +GCGKST + + I S LE
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI-----SELEGP 62
Query: 133 ISCDEERLKLEKEAEILG-------AQEDGGGEQLERVYERLEALDASTAEK-----RAA 180
+ K+E + G + Q+ V++R S E R +
Sbjct: 63 V-------KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRIS 115
Query: 181 EILYGLGFNKTMQA----------------KKTRDFSGGWRMRIALARALFINPTILLLD 224
L ++ +++ K SGG + R+ +ARAL I P +LL+D
Sbjct: 116 AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 225 EPTNHLDLEACVWLEETLKKF--DRILVVISHS 255
EP + LD A + +EE + + + +++H+
Sbjct: 176 EPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 105 GLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL---- 160
G +GCGKSTLL +I AS +IS L E E +I + + +Q+
Sbjct: 40 GPSGCGKSTLL----KIVAS-------LISPTSGTLLFEGE-DISTLKPEIYRQQVSYCA 87
Query: 161 -------ERVYERL----EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209
+ VY+ L + + + L T+ K + SGG + RI+
Sbjct: 88 QTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRIS 147
Query: 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR---ILVV-ISHSQDFLNGVCTN 265
L R L P +LLLDE T+ LD + E + ++ R I V+ ++H +D +N
Sbjct: 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADK 206
Query: 266 IIHMQ 270
+I +Q
Sbjct: 207 VITLQ 211
|
Length = 225 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 3e-05
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 388 FGVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
FGV L VAL+G NGAGK+TLLK + G L P G +R
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-----------RRHNHLR- 431
N++ ++ V L+G G+GKSTL++ + G L P G + + + +R
Sbjct: 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83
Query: 432 ----IAQF--HQHLAEKLDMDMSALQYMIKEYPGNEEE---KMRAAIGRFGLTGKAQVMP 482
+ Q+ +Q E ++ D++ + +EEE +++ A+ GL +
Sbjct: 84 KVGLVFQYPEYQLFEETIEKDIA---FGPINLGLSEEEIENRVKRAMNIVGL--DYEDYK 138
Query: 483 MKN---LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGL 535
K+ LS GQ+ RV A + +P +L+LDEPT LD + D + + E++ +
Sbjct: 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198
Query: 536 VLVSHDFRLINQVAHEIWV 554
+LVSH + ++A I V
Sbjct: 199 ILVSHSMEDVAKLADRIIV 217
|
Length = 287 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQ 256
SGG + R+ +ARAL NP +LL+DEPT+ LD + +EE LK+ I++V + Q
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 59/220 (26%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLER 162
++G +GCGKST L AI M+ L + SC + +I G D E L R
Sbjct: 70 IIGPSGCGKSTFLRAINR-----MNDL--IPSCHTTGALMFDGEDIYGKFTD---EVLLR 119
Query: 163 -----VYERLEALDASTAEKRA-AEILYGLGFNKTMQA--------------------KK 196
V+++ S + A L+G+ K ++ K
Sbjct: 120 KKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKN 179
Query: 197 TRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQ 256
SGG + R+ +AR L + P ILLLDEPT+ LD +A +E+ +++
Sbjct: 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE------------ 227
Query: 257 DFLNGVCTNIIHMQNKQ---------LKFYTGNFDQYVQT 287
L G T +I N Q + FY G ++ T
Sbjct: 228 --LRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265
|
Length = 286 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-DRILVVI 252
SGG + + LAR L +NP +LLLDEPT+ LD +EE ++ DR+ V+I
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVII 217
|
Length = 276 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHS 255
+ SGG + R+ +ARAL +P ILL DEPT+ LD A +EE LK IL+V +
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
Query: 256 Q 256
Q
Sbjct: 221 Q 221
|
Length = 265 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHS 255
SGG + R+ +ARA+ I P +LLLDEPT+ LD + + +EE LK +V+++H+
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHN 226
|
Length = 272 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 26/182 (14%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEAS 124
+++ LS ++ G D +L G G++G +G GKSTLL + G
Sbjct: 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI 63
Query: 125 DMSSLEAVISC--DEERLKL---------EKEAEILGAQEDGGGEQLERVYERLEALDA- 172
S E + + ER +L + + L + G + ERL A+ A
Sbjct: 64 MRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN----IGERLMAIGAR 119
Query: 173 --STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
A + L + + T R FSGG + R+ +AR L P ++ +DEPT L
Sbjct: 120 HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179
Query: 231 DL 232
D+
Sbjct: 180 DV 181
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM--TGDLVP---LDGMVRRHNH- 429
Y L KN+ + + A +GP+G GKST+L+ DL+P ++G V H
Sbjct: 19 YYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78
Query: 430 ------------LRIAQFHQ--HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLT 475
RI Q + K D A I Y G+ +E + ++ + L
Sbjct: 79 LYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALW 138
Query: 476 GKAQ---VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDSLAEALN 529
+ + +LS GQ+ R+ A QP ++L+DEP + LD I T I+ L L
Sbjct: 139 DEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 530 EWDGGLVLVSHDFRLINQVA 549
E +++V+H+ + +V+
Sbjct: 199 E-QYTIIIVTHNMQQAARVS 217
|
Length = 264 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 26/197 (13%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM------------------ 423
+ +N+ V+ V L GP+G+GKSTLL+ + + +P +G
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 424 ----VRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKA 478
VRR ++QF + + +D+ A + + P K + R L +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG---GL 535
+ S G++ RV A +LLLDEPT LD + E + E L
Sbjct: 146 WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAAL 205
Query: 536 VLVSHDFRLINQVAHEI 552
V + HD + VA +
Sbjct: 206 VGIFHDEEVREAVADRL 222
|
Length = 235 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530
LS GQR R+ A + P +L+LDE T+ LD E+ + AL
Sbjct: 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 28/183 (15%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV---------------RRHN 428
+ D + ++G +G+GKST ++++ + P G + R
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69
Query: 429 HLRIAQFHQHLAEKLDMDMSALQ---YMIKEYPGNEE---EKMRAAIGRFGLTGKAQVMP 482
+I Q A L M+ LQ + E+ EK + GL P
Sbjct: 70 RKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP 127
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLV 538
LS G + RV A +P +LL+DE + LD DS+ + L + L V +
Sbjct: 128 -DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186
Query: 539 SHD 541
+HD
Sbjct: 187 THD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 17/171 (9%)
Query: 387 DFGVDLDSRVALV--GPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-------RIAQFHQ 437
D + L+S LV GP+G GK+TLL L+ G + G + R F
Sbjct: 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78
Query: 438 H--LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494
L + D A + + E + + GL G A+ + LS GQR RV
Sbjct: 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRV 137
Query: 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGLVLVSHD 541
A P +LLLDEP LD T + + L E ++L++HD
Sbjct: 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 48/230 (20%)
Query: 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
P+LQ ++ Y +++ F + + +VG +G+GKSTLL + G L P G
Sbjct: 1 KPLLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 424 VR-------RHNHLRIAQ-------------FHQHLAEKLDMDMSALQYMIKEYPGNEEE 463
++++ HQ+ + L M +SA N E
Sbjct: 60 ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSA--------GANIGE 111
Query: 464 KMRAA----IGRFGLTG-----KAQVMPMK------NLSDGQRSRVVFAWLAYRQPHMLL 508
++ A G T + ++ P + S G + R+ A +P ++
Sbjct: 112 RLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVF 171
Query: 509 LDEPTNHLDIET----IDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
+DEPT LD+ +D L + + +++V+HD + +A + V
Sbjct: 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV 221
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQ 256
SGG + R+ +AR L + P I+L DEPT+ LD + +E+ LKK D +V+++H+
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYI-AR 315
Q ++ YTG F EL E + + + S ++YI R
Sbjct: 214 Q------------QAARISDYTGFF-----LMGELIEFGQTRQIFHNPREKSTEDYITGR 256
Query: 316 FG 317
FG
Sbjct: 257 FG 258
|
Length = 258 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 358 DVGKLPPPV--LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM-- 413
D +LP ++F +TF + + ++ F VA+VGP GAGK+TL+ L+
Sbjct: 324 DAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR 383
Query: 414 ----TGDLVPLDGM----VRRHNHLR--IAQFHQHLAEKLDMDMSALQYMIKEYPGNEE- 462
T + +DG+ V R LR IA Q A + + + +E +EE
Sbjct: 384 VYDPTVGQILIDGIDINTVTR-ESLRKSIATVFQD-AGLFNRSIRENIRLGREGATDEEV 441
Query: 463 -EKMRAAIGRFGLTGK-----AQVMPMKN-LSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515
E +AA + + V N LS G+R R+ A + +L+LDE T+
Sbjct: 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSA 501
Query: 516 LDIET 520
LD+ET
Sbjct: 502 LDVET 506
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 173 STAEKRAAEIL--YGLGFNKTMQAKKTRDF----SGGWRMRIALARALFINPTILLLDEP 226
+R +E+L GL K R SGG + R+A+ARA+ P +LL DEP
Sbjct: 112 REIRRRVSEVLDLVGLK-------HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP 164
Query: 227 TNHLD 231
T +LD
Sbjct: 165 TGNLD 169
|
Length = 223 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 27/188 (14%)
Query: 396 VALVGPNGAGKSTLLKLMTG--------------DLVPLDGMVRRHNHLRIAQFHQHLAE 441
V L+G +G GKSTL +L+ G DL LD RR + Q
Sbjct: 40 VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99
Query: 442 KLDMDMSA-------LQYMIKEYPGNEEEKMRAAIGRFGLTGK-AQVMPMKNLSDGQRSR 493
++ M+ L+++ ++ ++ + GL + A +P + LS GQ R
Sbjct: 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP-RQLSGGQLQR 158
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDG-GLVLVSHDFRLINQVA 549
+ A +P +++LDE ++LD+ I L L + G + ++HD RL+
Sbjct: 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFC 218
Query: 550 HEIWVCEN 557
+ V +
Sbjct: 219 QRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 55/198 (27%), Positives = 72/198 (36%), Gaps = 70/198 (35%)
Query: 103 LLGLNGCGKSTLLTAI-------GEIEASDMSSLEAVISCDEER---------------- 139
L+G NG GKSTLL + G I+ + LEA + + R
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGSGSIQFAG-QPLEAWSAAELARHRAYLSQQQTPPFAMP 85
Query: 140 ----LKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAK 195
L L + + + L V E L D K
Sbjct: 86 VFQYLTLHQPD---KTRTEAVASALNEVAEALGLDD-----------------------K 119
Query: 196 KTR---DFSGG-W-RMRIALARALFINPTI------LLLDEPTNHLDLEACVWLEETLKK 244
R SGG W R+R+A A L + P I LLLDEP N LD+ L+ L +
Sbjct: 120 LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
Query: 245 FDR--ILVVISHSQDFLN 260
+ I VV+S S D LN
Sbjct: 179 LCQQGIAVVMS-SHD-LN 194
|
Length = 248 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
AE A E L +G ++++ K + SGG R+A+A L + P IL+LDEPT LD
Sbjct: 121 AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 396 VALVGPNGAGKSTLLKLM---------TGDLVPLDGMVRRHNHLRIAQFHQ------HLA 440
+A++GP+G+GKSTLL + TG ++ + + R Q HL
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156
Query: 441 EKLDMDMSALQYMIKEYPGNEEEKMRAA---IGRFGLTGKAQVMP----MKNLSDGQRSR 493
+ + +L + K ++EK+ A I GLT + ++ +S G+R R
Sbjct: 157 VRETLVFCSLLRLPKSL--TKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLD-------IETIDSLAE 526
V A P +L+LDEPT+ LD + T+ SLA+
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254
|
Length = 659 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 17/167 (10%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
P+LQ V + D I N+ F + + GP+G GKSTLLK++ + P G +
Sbjct: 6 PLLQLQNVGY-LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 425 RRHNH----LRIAQFHQHLAEKLDM---------DMSALQYMI-KEYPGNEEEKMRAAIG 470
L+ + Q ++ D + I + P + +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP--DPAIFLDDLE 122
Query: 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
RF L + LS G++ R+ P +LLLDE T+ LD
Sbjct: 123 RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 57/276 (20%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVIS 134
+E + V + G +VD L++ + +G +GCGKSTLL + +D+ V
Sbjct: 23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM--NDLIPGAKV-- 78
Query: 135 CDEERLKLEKEAEILGAQEDGGG--EQLERVYERLEALDASTAEKRAAEILYGLGFN--- 189
E RL L ++ I +Q + Q+ V++R S E I + N
Sbjct: 79 --EGRL-LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYEN----IAFAPRANGYK 131
Query: 190 --------------------KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
K +K SGG + R+ +ARA+ + P +LL+DEP +
Sbjct: 132 GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191
Query: 230 LD-------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282
LD E C+ L+E +++++H+ + V F+ D
Sbjct: 192 LDPISTRQVEELCLELKEQYT-----IIMVTHNMQQASRVA--------DWTAFFNTEID 238
Query: 283 QYVQTRSELEENQMKQYKWEQEQIASMKEYIA-RFG 317
+Y + R +L E + + Q +EYI+ RFG
Sbjct: 239 EYGKRRGKLVEFSPTEQMFGSPQTKEAREYISGRFG 274
|
Length = 274 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 33/195 (16%)
Query: 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLK-------LMTGDLVPLDGM 423
+VT + + ++ F V S ALVG NG+GKSTL K L +G + L
Sbjct: 11 DVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP 70
Query: 424 VRRHNHLR---IAQFHQHLAEKLDMDMSAL--------QY----MIKEYPGNEEEKMRAA 468
R+ L+ +A Q +E++D L +Y ++ + + + AA
Sbjct: 71 TRQ--ALQKNLVAYVPQ--SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAA 126
Query: 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSL 524
+ R + + + + LS GQ+ RV A +Q ++LLDEP +D++T I L
Sbjct: 127 LARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185
Query: 525 AEALNEWDGGLVLVS 539
E +E G +LVS
Sbjct: 186 RELRDE--GKTMLVS 198
|
Length = 272 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 35/192 (18%)
Query: 102 GLLGLNGCGKSTLLTAIG---------EIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152
L+G +GCGKST L + +IE + + + + S + + L+L ++ +G
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK---IGMV 93
Query: 153 EDGGGEQLERVYERLEALDA--STAEKRAAEILYGLGFNKTMQAKKTRD--------FSG 202
L +Y+ + T +K+ + + K+ + +D SG
Sbjct: 94 FQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153
Query: 203 GWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQD-- 257
G + R+ +AR L I P ++L+DEPT+ LD + +EE LK+ I++V + Q
Sbjct: 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAG 213
Query: 258 --------FLNG 261
FLNG
Sbjct: 214 RISDRTAFFLNG 225
|
Length = 254 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 45/198 (22%)
Query: 398 LVGPNGAGKSTLLKLMTG------------------DLVPLDGMVRR----HNHLRIAQF 435
LVG +G+GKS + K + G DL+ L RR HN I Q
Sbjct: 38 LVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEE---------KMRAAI---GRFGLTGKAQVM-- 481
Q LD + +++ PG + + R AI R G+ M
Sbjct: 98 PQSC---LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154
Query: 482 -PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDG-GLV 536
P + L++G+ +V+ A QP +L+ DEPTN ++ T I L LN+ + ++
Sbjct: 155 FPYE-LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTIL 213
Query: 537 LVSHDFRLINQVAHEIWV 554
L+SHD ++++Q A +I V
Sbjct: 214 LISHDLQMLSQWADKINV 231
|
Length = 330 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQD 257
SGG + R+ +AR L I P ++L+DEPT+ LD + + +EE LKK I++V + Q
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228
Query: 258 ----------FLNG 261
FLNG
Sbjct: 229 AARISDKTAFFLNG 242
|
Length = 271 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235
S G + R+ALAR L N I +LDEPT LD A
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163
|
Length = 207 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 6e-05
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL----KKFDRILV 250
K SGG + R+ +ARA+ + P +LL+DEPT+ LD A +EE + KK+ I+V
Sbjct: 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIV 280
Query: 251 VISHSQ 256
S +Q
Sbjct: 281 THSMAQ 286
|
Length = 329 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 41/146 (28%)
Query: 396 VALVGPNGAGKSTLLKLM---------TGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446
AL+G +GAGK+TLL ++ TG+++ ++G N R + E+ D+
Sbjct: 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEIL-INGRPLDKNFQRSTGY----VEQQDVH 90
Query: 447 MSALQYMIKEYPGNEEEKMRAAIGRFG--LTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQ 503
+ +R A+ RF L G LS QR R+ LA +
Sbjct: 91 -------------SPNLTVREAL-RFSALLRG---------LSVEQRKRLTIGVELAAK- 126
Query: 504 PHMLLLDEPTNHLDIETIDSLAEALN 529
P +L LDEPT+ LD + ++ L
Sbjct: 127 PSILFLDEPTSGLDSQAAYNIVRFLK 152
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDL---VPLDGMVRRHN----- 428
+N K+++ + AL+GP+G GKSTLL+ + DL V + G +
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 429 -----HLRIA---------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474
LRI F + E + + A G +++K+ + L
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA--------QGIKDKKVLDEVVERSL 126
Query: 475 TGKA---QV-----MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDS 523
G A +V LS GQ+ R+ A +P ++L+DEPT+ LD I T I+
Sbjct: 127 RGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186
Query: 524 LAEALNEWDGGLVLVSH 540
L E L + + +V+V+H
Sbjct: 187 LMEELKK-NYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI-EASDMSSLEA 131
+ ++L++ + + D + + R L+G +GCGKSTLL + + +
Sbjct: 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG 66
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA-AEILYGLGFNK 190
I + E + ++ A+++ + G V++R S E A ++G K
Sbjct: 67 DILYNGENI-MDSGADVVALRRKIG-----MVFQRPNPFPKSIYENVAYGPRIHGEKNKK 120
Query: 191 TMQA------------KKTRD--------FSGGWRMRIALARALFINPTILLLDEPTNHL 230
T+ + +D SGG + R+ +AR L +NP ++L+DEP + L
Sbjct: 121 TLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180
Query: 231 DLEACVWLEETLKKFDR--ILVVISHS 255
D A +E+ ++ + +++++H+
Sbjct: 181 DPIATAKIEDLIEDLKKEYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI----DSLAEALNEWDGGLVLVS 539
++LS G++ RVV A ++P + L DEPT LD +T ++L EA+ +VL S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 540 HDFRLINQVAHE-IWVCENQAVTRWEGD 566
H +I ++ + IW+ EN + EG
Sbjct: 227 HWPEVIEDLSDKAIWL-ENGEIKE-EGT 252
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 38/193 (19%), Positives = 78/193 (40%), Gaps = 22/193 (11%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443
K + F + +A++G NG+GKSTL K++ G + P G + ++H + ++++
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89
Query: 444 DM---DMSA---------------LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
M D + L+ P +++ + GL
Sbjct: 90 RMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM 149
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHD 541
L+ GQ+ RV A +P +++ DE LD + I+ + E + + V+
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 542 FRLINQVAHEIWV 554
+I ++ ++ V
Sbjct: 210 IGMIKHISDQVLV 222
|
Length = 267 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 7e-05
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 33/152 (21%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD--GMVRRHNHLRIAQ----FHQH 438
+++ + + S VA+VG G GK++L+ M G+L + +V R + + Q F+
Sbjct: 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNAT 694
Query: 439 LAEKL-------------DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
+ E + +D++ALQ+ + PG + IG G+ N
Sbjct: 695 VRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD----LTEIGERGV----------N 740
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+S GQ+ RV A Y + + D+P + LD
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
Length = 1495 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423
P+++ ++ + + NLD ++ + L+GP+G GK+T+L+L+ G P G
Sbjct: 12 SPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 424 V----RRHNHLRIAQFH-----QHLAEKLDMDMS-----ALQYMIKEYPGNE-EEKMRAA 468
+ + H+ H Q A L M+ A +++ P E ++ A
Sbjct: 71 IMLDGQDITHVPAENRHVNTVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEA 128
Query: 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+ L AQ P LS GQ+ RV A +P +LLLDE + LD
Sbjct: 129 LRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 35/199 (17%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH--QHLAEKLDMDM------ 447
VAL+G +G GKSTL +L+ G P G V +A+ + Q A + D+ M
Sbjct: 41 VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE-PLAKLNRAQRKAFRRDIQMVFQDSI 99
Query: 448 SA--------------LQYMIKEYPGNEEEKMRAAIGRFGLT-GKAQVMPMKNLSDGQRS 492
SA L++++ + + L P LS GQ
Sbjct: 100 SAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP-PQLSGGQLQ 158
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLVLVSHDFRLINQV 548
RV A +P +L+LDE ++LD+ I L + ++ + ++HD RL+ +
Sbjct: 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF 218
Query: 549 AHEIWV------CENQAVT 561
+ V E Q V
Sbjct: 219 CQRVMVMDNGQIVETQPVG 237
|
Length = 268 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 63/242 (26%), Positives = 92/242 (38%), Gaps = 83/242 (34%)
Query: 73 IRIESLSVTF-----HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEA-SD 125
I +E S T+ + D LE+ G ++G G GKS+LL+A+ GE+E S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 126 MSSLEAVISC----------------------DEERLK-------LEKEAEILGAQEDGG 156
S+ I+ DEER + LE + EIL
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILP-----D 115
Query: 157 GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216
G+ E + E+ G N SGG + RI+LARA++
Sbjct: 116 GDLTE-IGEK--------------------GIN----------LSGGQKQRISLARAVYS 144
Query: 217 NPTILLLDEPTNHLD-------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHM 269
+ I LLD+P + +D E C+ L L RILV +H L I+ +
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHIFENCI-LGLLLNNKTRILV--THQLQLLP-HADQIVVL 200
Query: 270 QN 271
N
Sbjct: 201 DN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 31/232 (13%)
Query: 354 FRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM 413
F++++ G +L+ ++ G K+ ++ ++G +G+GKST+++L+
Sbjct: 22 FKYIEQGLSKEQILEKTGLSLGV-------KDASLAIEEGEIFVIMGLSGSGKSTMVRLL 74
Query: 414 TGDLVPLDGMV---------------RRHNHLRIAQFHQHLAEKLDM---DMSALQYMIK 455
+ P G V R +IA Q A M D +A +
Sbjct: 75 NRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134
Query: 456 EYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
E EK A+ + GL A P LS G R RV A P +LL+DE +
Sbjct: 135 GINAEERREKALDALRQVGLENYAHSYP-DELSGGMRQRVGLARALAINPDILLMDEAFS 193
Query: 515 HLD----IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562
LD E D L + + +V +SHD ++ I + +N V +
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245
|
Length = 400 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 51/202 (25%)
Query: 80 VTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG---EIEASDMSSLEAVISCD 136
V+FH + G ++G NG GKST + I E E+ I D
Sbjct: 26 VSFH-----------VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ-------IIID 67
Query: 137 EERLKLEKEAEI---------------LGAQ-EDGGGEQLERVYERLEALDASTAEKRAA 180
+ L E +I +GA ED LE + + ++R
Sbjct: 68 GDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN-----KGIPHEEMKERVN 122
Query: 181 EILYGLGFNKTMQAKKTRD---FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW 237
E L +G MQ K R+ SGG + R+A+A A+ + P I++LDE T+ LD E +
Sbjct: 123 EALELVG----MQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178
Query: 238 LEETLKKF--DRILVVISHSQD 257
L +T+K D + VIS + D
Sbjct: 179 LIKTIKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 45/190 (23%)
Query: 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR-------------------R 426
+ F + + VA+VG G GKS+LL + ++ ++G V R
Sbjct: 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLR 716
Query: 427 HNHLRIAQFHQHLAEKL---DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPM 483
N L F + L EK ++ AL ++ P + R IG G+
Sbjct: 717 ENIL----FGKALNEKYYQQVLEACALLPDLEILPSGD----RTEIGEKGV--------- 759
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL-----VLV 538
NLS GQ+ RV A Y + L D+P + +D + E + +G L +LV
Sbjct: 760 -NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV 818
Query: 539 SHDFRLINQV 548
+H + QV
Sbjct: 819 THGISYLPQV 828
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 157 GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216
G E VYE +A A IL T+ ++ SGG R R+A+ARA+
Sbjct: 435 GATDEEVYEAAKAAAAHDF------ILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488
Query: 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
N IL+LDE T+ LD+E ++ + +R +I+H
Sbjct: 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH 528
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 43/183 (23%)
Query: 103 LLGLNGCGKSTLLTAIGEIE------------ASDMSSLEAVISCDEERLKL-------- 142
L+G +GCGKSTLL + + D + I + R+K+
Sbjct: 34 LIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93
Query: 143 -------EKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAK 195
E A L AQ + L+ V E +L + + L F
Sbjct: 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVE--RSLRGAALWDEVKDRLKSHAFG------ 145
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVI 252
SGG + R+ +AR + + P ++L+DEPT+ LD A +EE LKK + +V++
Sbjct: 146 ----LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIV 200
Query: 253 SHS 255
+HS
Sbjct: 201 THS 203
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 397 ALVGPNGAGKSTLLKLMT------------GDLVPLDG-----------MVRRHNHLRIA 433
A++GP+G GKST L+ + G+L G +RR RI
Sbjct: 69 AMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT-FRGKNVYDADVDPVALRR----RIG 123
Query: 434 QFHQHLAE--KLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK---NLSD 488
Q K D A I+ Y G+ +E++ ++ R L + + +LS
Sbjct: 124 MVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG 183
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDSLAEALNEWDGGLVLVSHD 541
GQ+ R+ A P ++L+DEP + LD + T I+ L E L E + +V+V+H+
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHN 238
|
Length = 285 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLN 260
SGG R R+ +ARAL P ILL DE T+ LD + E+L++ +VI+H L+
Sbjct: 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHR---LS 646
Query: 261 GV--CTNIIHMQNKQLKFYTGNFDQYVQTR---SELEENQM 296
+ I + ++ G +D+ + ++L Q+
Sbjct: 647 TIRNADRIYVLDAGRV-VQQGTYDELMAREGLFAQLARRQL 686
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 37/184 (20%)
Query: 397 ALVGPNGAGKSTLLKLMT--GDLVP---LDG-----------------MVRRHNHLRIAQ 434
+GP+G GKST+L+ + DLV +G +VRR+ + Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 435 ---FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL----TGKAQVMPMKNLS 487
F + D A + Y G+ ++++ A+ L K +V + +LS
Sbjct: 98 PNPFSMSI-----FDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGL-SLS 151
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLI 545
GQ+ R+ A +P +LLLDEP + LD + E + E D + LV+H+ +
Sbjct: 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211
Query: 546 NQVA 549
+VA
Sbjct: 212 IRVA 215
|
Length = 261 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 48/219 (21%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-- 424
++F VT Y NL+ + + L+GP+G+GK+T +K++ + P G +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 425 -------------RRH-----------NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN 460
RR H+ + + +++ + ++K
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE-----------NIALVPKLLKWPKEK 109
Query: 461 EEEKMRAAIGRFGL--TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+ + GL A P LS GQ+ RV A P +LL+DEP LD
Sbjct: 110 IRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP 168
Query: 519 ETIDSLAEAL----NEWDGGLVLVSHD----FRLINQVA 549
T D L E E +V V+HD FRL +++A
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA 207
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 48/230 (20%), Positives = 98/230 (42%), Gaps = 53/230 (23%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL--- 129
I +E+L+ F ++ + L++ L+G +GCGKST + + + +D+
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM--NDLIPGFRH 61
Query: 130 EAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFN 189
E I D + + +++ ++ G V+++ S + A YGL +
Sbjct: 62 EGHIYLDGVDI-YDPAVDVVELRKKVG-----MVFQKPNPFPKSIFDNVA----YGLRIH 111
Query: 190 -------------KTMQA------------KKTRDFSGGWRMRIALARALFINPTILLLD 224
++++A K SGG + R+ +AR + ++P ++L+D
Sbjct: 112 GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171
Query: 225 EPTNHLDLEACVWLEETLKKF--DRILVVISHSQD-----------FLNG 261
EP + LD + +E+ + K D +V+++H+ FLNG
Sbjct: 172 EPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNG 221
|
Length = 250 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL- 443
N+ F V V ++G NG+GKSTL L+ G +P G V + L +L
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101
Query: 444 ---DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500
++++ L + + + +++ I F GK P+K S G +SR+ FA
Sbjct: 102 GIENIELKGLMMGLTK---EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV 158
Query: 501 YRQPHMLLLDE 511
+ P +L++DE
Sbjct: 159 HINPDILVIDE 169
|
Length = 549 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 40/182 (21%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVR-----------RHNHLRIAQFHQH------ 438
V ++G NGAGKSTLL + GDL P G + +A+ Q
Sbjct: 35 VTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94
Query: 439 ----LAEKLDMDM---------SALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
+ E L + SAL + + R A GL + +
Sbjct: 95 PELTIEENLALAESRGKKRGLSSALNERRRSS-----FRERLARLGLGLENRLS-DRIGL 148
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEALNEWDGGLVLVSHD 541
LS GQR + P +LLLDE T LD +T ++ A+ + E ++V+H+
Sbjct: 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208
Query: 542 FR 543
Sbjct: 209 ME 210
|
Length = 263 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 57/215 (26%), Positives = 85/215 (39%), Gaps = 51/215 (23%)
Query: 77 SLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM---SSLEAVI 133
LS + + D LE + L+G +GCGKST L + + +D+ + +E I
Sbjct: 11 GLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM--NDLIPGARVEGEI 68
Query: 134 SCDEERLKLEKEAEILGAQEDGGGEQLER----VYERLEALDASTAEKRAAEILYGLGFN 189
D E I D +L R V+++ S E A YGL N
Sbjct: 69 LLDGE--------NIYDPHVDV--VELRRRVGMVFQKPNPFPKSIFENVA----YGLRVN 114
Query: 190 ----KTMQAKKTRD---------------------FSGGWRMRIALARALFINPTILLLD 224
K A++ SGG + R+ +ARAL + P +LL+D
Sbjct: 115 GVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 225 EPTNHLDLEACVWLEE---TLKKFDRILVVISHSQ 256
EP + LD A +EE LK I++V + Q
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 57/199 (28%)
Query: 90 DSELELNYGRRYGLLGLNGCGKST--------LLTAIGEIEASDMSSLEAVISCDEERL- 140
D LE+ G +LG NG GKST L+ + G++ + + DEE L
Sbjct: 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT------SDEENLW 81
Query: 141 KLEKEA---------EILGA--QED--GGGEQL--------ERVYERLEALDASTAEKRA 179
+ +A +I+ +ED G E L ERV E L+ + + A
Sbjct: 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA 141
Query: 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEAC 235
+L SGG + R+A+A L + P ++ DEPT LD E
Sbjct: 142 PHLL-----------------SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184
Query: 236 VWLEETLKKFDRILVVISH 254
++E KK+ +++I+H
Sbjct: 185 NTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 36/202 (17%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ + V +G N + +L ++ +AL+G +G GK+TLL+ + G V G+
Sbjct: 7 RIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG-FVKAAGLTG 62
Query: 426 RHNHLRIAQFH-QHLA-EKLDMDMSALQYMIKEYPGNEE-----------------EKMR 466
R + IA H K + + Y + + E+ E++
Sbjct: 63 R---IAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-------IE 519
A+ GL A +P + LS G + R+ A +P +LLLDEP + LD E
Sbjct: 120 DALKLVGLGDAAAHLPAQ-LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE 178
Query: 520 TIDSLAEALNEWDGGLVLVSHD 541
I +L E L E ++ V+HD
Sbjct: 179 EIAALHEELPELT--ILCVTHD 198
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 2e-04
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASD 125
+ +LSV G L+ D L L G +LG NG GKSTLL A+ GE+
Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS 56
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
LD T R + L+ LG + ++ + SGG + R+A+A + + P +L+LDEPT
Sbjct: 109 LDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
Query: 230 LD 231
LD
Sbjct: 168 LD 169
|
Length = 277 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 54/166 (32%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 80 VTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER 139
V F L + +L + G +LG +G GKSTLL I E S E +I+ +
Sbjct: 7 VRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILIN-GVDH 63
Query: 140 LKL---EKEAEILGAQEDGGGEQLERVYE----------RLEALDASTAEKRAAEILYGL 186
E+ +L QE+ L V + +L A E AA++ GL
Sbjct: 64 TASPPAERPVSML-FQENNLFAHLT-VAQNIGLGLSPGLKLNAEQREKVEAAAAQV--GL 119
Query: 187 -GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
GF K + + SGG R R+ALAR L ILLLDEP + LD
Sbjct: 120 AGFLK----RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225
+L A D E A + GL ++ + + SGG R R+ALAR L + +LLLDE
Sbjct: 100 KLTAEDRQAIEVALARV--GLA---GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154
Query: 226 PTNHLD 231
P LD
Sbjct: 155 PFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 43/242 (17%)
Query: 66 SHPLSRDIRIESLSVTF----HGHDLIVDSELELNYGRRYGLLGLNGCGKS-TLLTAI-- 118
+ PL + IE+LSV F ++ D L++ G L+G +G GKS T L+ +
Sbjct: 2 TQPL---LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL 58
Query: 119 ----------GEIEASDMSSLEAVISCDEERLKL---EKEAEILGAQEDGGG----EQLE 161
G+I S L A E+ L+ K A I QE LE
Sbjct: 59 LPSPPVVYPSGDIRFHGESLLHA----SEQTLRGVRGNKIAMIF--QEPMVSLNPLHTLE 112
Query: 162 R-VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKT-RDF----SGGWRMRIALARALF 215
+ +YE L E EIL L QA K D+ SGG R R+ +A AL
Sbjct: 113 KQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172
Query: 216 INPTILLLDEPTNHLDL----EACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271
P +L+ DEPT LD+ + L E ++ + L+ I+H+ + + + MQN
Sbjct: 173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 272 KQ 273
+
Sbjct: 233 GR 234
|
Length = 529 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKL---MTGDLVPLDGMVR--------------RH 427
+++ ++ + AL+G +G GKST L+ M + +DG+V R
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 428 NHLRIAQFHQHLAEKLDMDMS---ALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK 484
N + Q + + ++S L MIK EE + + + GL + + +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKN-KDEEEALVVDCLQKVGLFEEVKDKLKQ 138
Query: 485 N---LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL--VLVS 539
N LS GQ+ R+ A +P +LLLDEPT+ LD + + E L E L ++V+
Sbjct: 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198
Query: 540 HDFRLINQVA 549
H+ + +VA
Sbjct: 199 HNMQQGKRVA 208
|
Length = 246 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 46/185 (24%), Positives = 68/185 (36%), Gaps = 18/185 (9%)
Query: 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCD-----EERLK 141
L+ D L L G L+G +G GKS AI + ++ I D ++
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 142 LEKEAEILGAQEDG------GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAK 195
A I+ G L L + A E L +G +
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL-SKQARALILEALEAVGLPDPEEVL 119
Query: 196 KTRDF--SGGWRMRIALARALFINPTILLLDEPTNHLDLEACV----WLEETLKKFDRIL 249
K F SGG R+ +A AL + P L+ DEPT LD+ L E + F +
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179
Query: 250 VVISH 254
++I+H
Sbjct: 180 LLITH 184
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK--FDRILVVISHSQDF 258
S G R+ALARAL +LLLDEPT LD + + + L + ++++H +
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 259 LNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286
L I MQ+ Q+ G++ + Q
Sbjct: 547 LAQ-WDQIWVMQDGQI-VQQGDYAELSQ 572
|
Length = 588 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
A+++A + L +G ++ + +K + SGG R+A+A + P IL LDEP LD E
Sbjct: 121 AKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180
Query: 235 CVWLEETLKKFDR---ILVVISHSQD 257
+ + K + + +++++H+ D
Sbjct: 181 RKEMMQLFKDYQKAGHTVILVTHNMD 206
|
Length = 287 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 67/202 (33%)
Query: 388 FGVDLD---SRV-ALVGPNGAGKSTLLK-------LMTG-------------------DL 417
F + + +RV A +GP+G GKSTLL+ L+ D+
Sbjct: 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101
Query: 418 VPLD---GMV-RRHN------------HLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461
L GMV +R N LR+ Q + + +D A++ ++ +
Sbjct: 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRL----QGINNRRVLD-EAVERSLRGAALWD 156
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET 520
E K R FGL+G GQ+ R+V A +P +LLLDEPT+ LD I T
Sbjct: 157 EVKDRLHENAFGLSG------------GQQQRLVIARAIAIEPEVLLLDEPTSALDPIST 204
Query: 521 --IDSLAEALNEWDGGLVLVSH 540
I+ L L +V+V+H
Sbjct: 205 LKIEELITELKS-KYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR--ILVVISH 254
SGG + R+ +ARA+ + P ++L+DEP + LD + + +EE + + +++++H
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 47/195 (24%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVPLDGMVRRHNHLRIA---QFHQH 438
++ + + AL+GP+G GKSTLL+ DL+P RI ++
Sbjct: 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP---------GCRITGDILYNGE 73
Query: 439 LAEKLDMDMSALQY---MIKEYP------------------GNEEEKMRAAIGRFGLTGK 477
D+ AL+ M+ + P G + +K I L G
Sbjct: 74 NIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGA 133
Query: 478 AQVMPMKN--------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDSLAE 526
A +K+ LS GQ+ R+ A P ++L+DEP + LD I T I+ L E
Sbjct: 134 ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193
Query: 527 ALNEWDGGLVLVSHD 541
L + + +++V+H+
Sbjct: 194 DLKK-EYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 396 VALVGPNGAGKSTLLKLM-------TG-------DLVPLDG----MVRRHNHLRIAQ-FH 436
VA+VG +G+GKSTL+ ++ +G D+ LD +RR + I Q +H
Sbjct: 37 VAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH 96
Query: 437 --QHLAEKLDMDMSALQYMIKEYPGNE----EEKMRAAIGRFGLTGKAQVMPMKNLSDGQ 490
HL ++++ A+ Y G E + + + R GL + + P LS GQ
Sbjct: 97 LLSHLTAAQNVEVPAV------YAGLERKQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQ 149
Query: 491 RSRVVFAWLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQ 547
+ RV A ++L DEPT LD E + ++ L + +++V+HD ++ Q
Sbjct: 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ 209
|
Length = 648 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVR-RHNHLRIAQF 435
D I + L+ V A++GPNG+GKSTL + G D G V + L
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72
Query: 436 HQHLAEKLDMDMSALQYMIKEYPG-----------NEEEKMR--AAIGRFGLTG----KA 478
E + M A QY + E PG N R + RF K
Sbjct: 73 EDRAGEGIFM---AFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKI 128
Query: 479 QVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
++ M S G++ R +A +P + +LDE + LDI+ + +A+ +
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGV 188
Query: 529 NEWDGG---LVLVSHDFRLINQV 548
N G ++V+H R+++ +
Sbjct: 189 NSLRDGKRSFIIVTHYQRILDYI 211
|
Length = 248 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 43/197 (21%)
Query: 398 LVGPNGAGKSTLLKLMTG------------------DLVPLDGMVRR----HNHLRIAQF 435
LVG +G+GKS + K + G DL+ L RR HN ++
Sbjct: 38 LVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHN---VSMI 94
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEE---------KMRAAIG---RFGLTGKAQVMPM 483
Q LD + +I+ P + + R AI R G+ +M
Sbjct: 95 FQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRS 154
Query: 484 --KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDG-GLVL 537
L++G+ +V+ A QP +L+ DEPTN ++ T I L LN+ ++L
Sbjct: 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILL 214
Query: 538 VSHDFRLINQVAHEIWV 554
+SHD ++I+Q A +I V
Sbjct: 215 ISHDLQMISQWADKINV 231
|
Length = 330 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVV 251
K SGG + R+ +AR + + P ++L+DEPT+ LD + + +E+ LKK + +V+
Sbjct: 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVI 201
Query: 252 ISHS 255
++H+
Sbjct: 202 VTHN 205
|
Length = 251 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 52/210 (24%)
Query: 68 PLSRDIRIESLSVTFHGH--DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125
P +I +E+LSV + ++ + ++ G + G++G G GKSTL+ A+
Sbjct: 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILAL------- 54
Query: 126 MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERL---------------EAL 170
LEA +E +I D LE + L L
Sbjct: 55 FRFLEA------------EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 171 DA----STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226
D S E A + G N S G R + LARAL P +L+LDE
Sbjct: 103 DPFDEYSDEEIYGALRVSEGGLN----------LSQGQRQLLCLARALLKRPRVLVLDEA 152
Query: 227 TNHLDLEACVWLEETLKKF--DRILVVISH 254
T +D +++T+++ + ++ I+H
Sbjct: 153 TASIDYATDALIQKTIREEFTNSTILTIAH 182
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET---LKKFDRILVVISHSQ 256
SGG + R+ +AR + I P ++L+DEP + LD + + +EET LKK I++V + Q
Sbjct: 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 377 TPDNLIYKN-LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQF 435
TP+ + L F V + + + GPNG GKS+L +++ G+L P+ G R + F
Sbjct: 461 TPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGG-RLTKPAKGKLF 518
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN---------- 485
+ + ++ M + L+ I YP + E+ R + L + + +
Sbjct: 519 Y--VPQRPYMTLGTLRDQII-YPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSA 575
Query: 486 -------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLV 538
LS G++ R+ A L Y +P +LDE T+ + ++ + E+ L V
Sbjct: 576 VQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSV 635
Query: 539 SH 540
SH
Sbjct: 636 SH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 61/257 (23%), Positives = 113/257 (43%), Gaps = 47/257 (18%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI----------GEI--E 122
I++L + + ++++ L +N G + ++G NG GKSTL I G+I +
Sbjct: 10 IKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFK 69
Query: 123 ASDMSSLEAVISCDEER------LKLEKEAEILGAQEDGGGEQL-------ERVYERLEA 169
+ LE EER L + EI G +R ++ L
Sbjct: 70 GESILDLEP-----EERAHLGIFLAFQYPIEIPGVSN----ADFLRLAYNSKRKFQGLPE 120
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRD-FSGGWRMRIALARALFINPTILLLDEPTN 228
LD + E L +G + + ++ + FSGG + R + + ++ + +LDE +
Sbjct: 121 LDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180
Query: 229 HLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIH-MQNKQLKFYTGNFDQY 284
LD++A + E + K + +++I+H Q L+ + + +H MQN ++ TG+
Sbjct: 181 GLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKI-IKTGD---- 235
Query: 285 VQTRSELEENQMKQYKW 301
+ ELE+ K Y W
Sbjct: 236 AELAKELEK---KGYDW 249
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 38/160 (23%), Positives = 53/160 (33%), Gaps = 36/160 (22%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCDEERLKLEK 144
LN G + G NG GK+TLL + GE+ + + E L L
Sbjct: 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80
Query: 145 EAEILGA----------QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQA 194
+ GG Q + + L A+ + E A L
Sbjct: 81 LPGLKPELSALENLHFWAAIHGGAQRT-IEDALAAVGLTGFEDLPAAQL----------- 128
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
S G + R+ALAR + +LDEPT LD
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
+ SGG R R+ +ARAL P++LLLDEP LD+
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 397 ALVGPNGAGKSTLLKLMTGDLVP------LDGMVRRH--NHLR-IAQFHQHLAEKLDMDM 447
AL+G +G GKSTLL+++ G P LDG+ H + R I Q A L M
Sbjct: 49 ALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHM 106
Query: 448 SALQ---YMIKE--YPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501
+ Q + +K+ P E ++ +G + A+ P + LS GQR RV A
Sbjct: 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ-LSGGQRQRVALARSLA 165
Query: 502 RQPHMLLLDEPTNHLDIETIDSL----AEALNEWDGGLVLVSHD 541
++P +LLLDEP LD + D + + L V+V+HD
Sbjct: 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
|
Length = 377 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 54/224 (24%), Positives = 84/224 (37%), Gaps = 54/224 (24%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV--------RRHNHLRIA 433
I + + V ++G NG GK+TLLK + G L G + + H R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 434 ----------QFHQHL--AEKLDMDMSALQYMIKEYPGNEE--------EKMRAAIGRFG 473
+ L E L ++AL ++ P +E ++M GR G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--DEIYELFPVLKEML---GRRG 129
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL------DIE-TIDSLAE 526
+LS GQ+ ++ A +P +LLLDEPT + DI I L
Sbjct: 130 ----------GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 527 ALNEWDGGLVLVSHDFRLINQVAHEIWVCEN-QAVTRWEGDIMD 569
E ++LV ++A +V E + V GD +D
Sbjct: 180 ---EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 30/100 (30%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P HLD+ E+C+
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608
Query: 240 ETLKKFDRILVVISHSQDFLNGVC---TNIIHMQNKQLKF 276
E LKK D+IL++ H GVC +Q K+ F
Sbjct: 609 EHLKKADKILLL--H-----EGVCYFYGTFSELQAKRPDF 641
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 44/214 (20%)
Query: 69 LSRDIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------G 119
L+ DI I +S ++ +G +++ D L + + ++G++G GKSTL + G
Sbjct: 470 LNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529
Query: 120 EIEASDMSSLEAVISCDEERLKLEK-----------------EAEILGAQEDGGGEQLER 162
EI L D +R L + E +LGA+E+ +++
Sbjct: 530 EI------LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWA 583
Query: 163 VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222
E AE + LG+ T +++ SGG + RIALARAL + +L+
Sbjct: 584 ACE--------IAEIKDDIENMPLGYQ-TELSEEGSSISGGQKQRIALARALLTDSKVLI 634
Query: 223 LDEPTNHLDL--EACVWLEETLKKFDRILVVISH 254
LDE T++LD E + + L D+ ++ ++H
Sbjct: 635 LDESTSNLDTITEKKI-VNNLLNLQDKTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH----------QHLAEKLDM 445
VAL+GP+G+GK+TLL+++ G G +R H +++ H QH A M
Sbjct: 31 VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT-DVSRLHARDRKVGFVFQHYALFRHM 89
Query: 446 DMS-ALQYMIKEYPGNEEEKMRAAIGR--------FGLTGKAQVMPMKNLSDGQRSRVVF 496
+ + + + P E AAI L A P + LS GQ+ RV
Sbjct: 90 TVFDNIAFGLTVLP-RRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ-LSGGQKQRVAL 147
Query: 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLVSHDFRLINQVAHEI 552
A +P +LLLDEP LD + L L + L V V+HD +VA +
Sbjct: 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRV 207
Query: 553 WV 554
V
Sbjct: 208 VV 209
|
Length = 353 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAEALNEWDGGLVLV 538
P LS GQ+ R+ A +P ++LLDEPT+ LD + I+ L E L+E + +V+V
Sbjct: 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIV 201
Query: 539 SHD 541
+H+
Sbjct: 202 THN 204
|
Length = 250 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 31/173 (17%)
Query: 105 GLNGCGKSTLLTAI-----GEIEA-SDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGE 158
G G GKST+L AI G+ +L +V + E+ ++ ++ G
Sbjct: 35 GPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQL--------GG 86
Query: 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
+ RV ER LD R + G F++ + A+ SGG +L+ AL ++
Sbjct: 87 KKYRV-ERSRGLDYDQF-TRIVLLPQG-EFDRFL-ARPVSTLSGGETFLASLSLALALSE 142
Query: 219 TI----------LLLDEPTNHLDLEACVWLEETLKK---FDRILVVISHSQDF 258
+ L +DE LD EA + L+ +R++ VISH ++
Sbjct: 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL 195
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHS 255
D SGG + R+ +ARA+ +P ++L+DEP + LD A +E+ +++ + +V+++H+
Sbjct: 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238
|
Length = 285 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 12/127 (9%)
Query: 426 RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN 485
+ + + L + +K + + + + R + +K
Sbjct: 136 LASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRL------LKLLIKG 189
Query: 486 LSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALN---EWDGGLVLVS 539
+SDG + + +LL+DEP N L + + L E L E L+ +
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249
Query: 540 HDFRLIN 546
H L++
Sbjct: 250 HSPLLLD 256
|
Length = 256 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 37/195 (18%)
Query: 83 HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASD--MSSLEAVISCDEER 139
G ++ + L++ G + G G GK++LL I GE+E S+ + + +
Sbjct: 48 VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFS 107
Query: 140 LKLE---KEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKK 196
+ KE I G D Y + A E+ +I + T+ +
Sbjct: 108 WIMPGTIKENIIFGVSYDE--------YRYKSVVKACQLEE---DITKFPEKDNTVLGEG 156
Query: 197 TRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW------------ 237
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216
Query: 238 -LEETLKKFDRILVV 251
E LKK D+IL++
Sbjct: 217 SKMEHLKKADKILIL 231
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 26/201 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ + L V ++ D L + GR LLG NG GKSTLL A+ G++
Sbjct: 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGAR 61
Query: 132 V---ISCDEERL------KLEKEAEILGAQEDGG----GEQLERVYERLEALDASTAEKR 178
V ++ + E L +L + +L ++ + A A R
Sbjct: 62 VTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHR 121
Query: 179 AAEILY---GLGFNKTMQAKKTRDFSGGWRMRIALARAL---------FINPTILLLDEP 226
EI + L + + SGG R+ AR L P LLLDEP
Sbjct: 122 DGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181
Query: 227 TNHLDLEACVWLEETLKKFDR 247
T LDL L +T+++ R
Sbjct: 182 TAALDLAHQHRLLDTVRRLAR 202
|
Length = 272 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 47/195 (24%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVP---LDGMVRRHNHLRIAQFHQH 438
K ++ ++ + AL+GP+G GKST L+ + DL+P ++G V
Sbjct: 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV---------LLDGQ 70
Query: 439 LAEKLDMDMSALQY---MIKEYP------------------GNEEEKMRAAIGRFGLTGK 477
K D+D++ L+ M+ + P G +++K I L G
Sbjct: 71 DIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA 130
Query: 478 AQVMPMKN--------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDSLAE 526
A +K+ LS GQ+ R+ A +P +LL+DEPT+ LD I T I+ L +
Sbjct: 131 ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQ 190
Query: 527 ALNEWDGGLVLVSHD 541
L + D +V+V+H+
Sbjct: 191 ELKK-DYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 26/207 (12%)
Query: 81 TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTL---LTAI-------GEI-------EA 123
TF G + +LE+ G GL G NG GKSTL L+ + GEI +A
Sbjct: 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA 69
Query: 124 SDMSSLEAV-ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEI 182
S++ E I + L L E + A+ G ++ R+ + RA +
Sbjct: 70 SNIRDTERAGIVIIHQELTLVPELSV--AENIFLGNEITLPGGRM---AYNAMYLRAKNL 124
Query: 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL---DLEACVWLE 239
L L + + D+ GG + + +A+AL +L+LDEP++ L + E + +
Sbjct: 125 LRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNI 266
LK V ISH + + VC I
Sbjct: 185 RDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 43/159 (27%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLL-TAIGEIEASDMSSL----------------EAVISC 135
L +N G L+G NG GK+TLL T G+ A+ + EAV
Sbjct: 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85
Query: 136 DE-----ERLKLEKEAEILG--AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGF 188
E R+ +E+ + G A+ D E+++ VYE L E+R
Sbjct: 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL----HERRI--------- 132
Query: 189 NKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227
++ SGG + +A+ RAL P +LLLDEP+
Sbjct: 133 ------QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
Length = 237 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILVVISHSQ 256
SGG R R+ALAR L ILLLDEP + LD E + + ++ L+++SHS
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190
Query: 257 D 257
+
Sbjct: 191 E 191
|
Length = 232 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 39/200 (19%)
Query: 372 VTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH 429
+TF Y D ++ F V ++++G NG+GKST ++L+ G L G +
Sbjct: 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69
Query: 430 LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE------------------------EEKM 465
L L E+ D+ M+ + P N+ +E++
Sbjct: 70 L--------LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERV 121
Query: 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----IETI 521
A+ G+ + P + LS GQ+ RV A +P +++LDE T+ LD +E I
Sbjct: 122 NEALELVGMQDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 522 DSLAEALNEWDGGLVLVSHD 541
++ +++ ++ ++HD
Sbjct: 181 KTIKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 41/258 (15%)
Query: 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI----------GEIE-- 122
I+ L V+ ++ LE+ G + ++G NG GKSTL + G +E
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 123 ASDMSSLEAVISCDEER------LKLEKEAEILGAQED---GGGEQLERVYERLEALDAS 173
D+ L E+R + + EI G R Y E LD
Sbjct: 64 GKDLLELSP-----EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRF 118
Query: 174 TAEKRAAEILYGLGFNKTMQAKKTR-DFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
+ E + L + + + FSGG + R + + + P + +LDE + LD+
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 233 EACVWLEE---TLKKFDRILVVISHSQDFLNGVCTNIIHM--QNKQLKFYTGNFDQYVQT 287
+A + + +L+ R ++++H Q L+ + + +H+ Q + +K +G+F Q
Sbjct: 179 DALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK--SGDFTLVKQ- 235
Query: 288 RSELEENQMKQYKWEQEQ 305
LEE + Y W EQ
Sbjct: 236 ---LEE---QGYGWLTEQ 247
|
Length = 248 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 33/220 (15%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-------------G 119
+ ++ LS+ + + D +++ L+G +GCGKST L +I G
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81
Query: 120 EIEASDMSSLEAVISCDEERLKL----EKEAEILGAQEDGGGEQLERVYERLEA-LDAST 174
EI ++ L++ I+ R ++ +K + + L+ ER ++ LD
Sbjct: 82 EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
E L+ ++ + + SGG + R+ +AR L + P +LLLDEP + LD +
Sbjct: 142 EESLTKAALWDEVKDRLHSSALS--LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 235 CVWLEETLK--KFDRILVVISHSQD-----------FLNG 261
+EE + K + +++++H+ FLNG
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNG 239
|
Length = 268 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 196 KTRDF----SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVV 251
K ++F SGG + R+ +ARA+ P +LL DEPT +LD + ++F+R+ V
Sbjct: 130 KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189
Query: 252 I 252
+
Sbjct: 190 V 190
|
Length = 222 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 48/207 (23%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH 429
++V+FG + ++ + ++ AL+GP+G+GKSTLL++ + ++ +
Sbjct: 9 LKVSFGQVE---VLDGVNLEIPDNTITALMGPSGSGKSTLLRV-------FNRLIELYPE 58
Query: 430 LRIA-QFHQHLAEKLDMDMSALQ---YMIKEYPG-----------------NEEEKMRAA 468
R++ + + + MD+ L+ M+ + P N K +
Sbjct: 59 ARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE 118
Query: 469 IG---RFGLTGKAQV---------MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
+ R+ L KAQ+ P LS GQ+ R+ A QP +LL DEPT +L
Sbjct: 119 LQERVRWALE-KAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 517 DIET---IDSLAEALNEWDGGLVLVSH 540
D E I+SL L + D +VLV+H
Sbjct: 178 DPENTAKIESLFLELKK-DMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 376 YTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN----HL 430
Y PD + KN+ F V ++ +VG GAGKSTL+ + L +G + +
Sbjct: 16 YAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI 75
Query: 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPM------- 483
+ L +I + P +R+ + F ++
Sbjct: 76 PLEDLRSSLT------------IIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGG 123
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHD 541
NLS GQR + A ++P +L+LDE T +D T + + + E + ++ ++H
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHR 183
Query: 542 FRLI 545
R I
Sbjct: 184 LRTI 187
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 26/150 (17%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLM------TGDLVPLDGMVRRHNHLR-----IA 433
G+DLD + LVGP+G GKSTLL+++ T + + G R N L IA
Sbjct: 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG--RVVNELEPADRDIA 79
Query: 434 QFHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLS 487
Q+ A L MS + M I+ P E EE++ A L P + LS
Sbjct: 80 MVFQNYA--LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRE-LS 136
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
GQR RV R+P + L DEP ++LD
Sbjct: 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 47/154 (30%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLER 162
L+G +GCGKSTLL + +E ++S E I + + A+ R
Sbjct: 35 LVGPSGCGKSTLLRMVAGLER--ITSGE--IWIGGRVVNELEPAD--------------R 76
Query: 163 ----------------VYERLE------ALDASTAEKR---AAEILYGLGFNKTMQAKKT 197
V E + + + E+R AA IL L + +K
Sbjct: 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL-ELE---PLLDRKP 132
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
R+ SGG R R+A+ RA+ P + L DEP ++LD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHS 255
SGG + R+ +AR L ++P ++L+DEP + LD A +E+ +++ + +VV++H+
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258
|
Length = 305 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVR-RHNHLRIAQFHQHLAEKL 443
G+ L R + LVG +G+GKSTL + L+P G +R + + +
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLR-LIPSQGEIRFDGQDIDGLSRKEMRPLRR 363
Query: 444 DMD-------------MSALQYMIKE---------YPGNEEEKMRAAIGRFGLTGKAQVM 481
M M+ Q +I+E ++++ A+ GL +
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR 422
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDSLAEALNEWDGGLVL 537
S GQR R+ A +P ++LLDEPT+ LD + +D L + + +
Sbjct: 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF 482
Query: 538 VSHDFRLINQVAHEIWV 554
+SHD ++ + H + V
Sbjct: 483 ISHDLAVVRALCHRVIV 499
|
Length = 534 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
++F V+ Y + +++ ++ + L+GP+G+GK+T LK++ + P G +
Sbjct: 2 IEFENVSKRYGNKKAV-DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 427 HNH---------LR---------IAQF-HQHLAEKLDMDMSALQYMIKEYPGNE-EEKMR 466
LR I F H +AE + A + + +++
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI-----ATVPKLLGWDKERIKKRAD 115
Query: 467 AAIGRFGLTGK--AQVMPMKNLSDGQRSRV-VFAWLAYRQPHMLLLDEPTNHLDIETIDS 523
+ GL A P LS GQ+ RV V LA P +LL+DEP LD T
Sbjct: 116 ELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAAD-PPILLMDEPFGALDPITRKQ 173
Query: 524 LAEALNEWDGGL----VLVSHD 541
L E + E L V V+HD
Sbjct: 174 LQEEIKELQKELGKTIVFVTHD 195
|
Length = 309 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 103 LLGLNGCGKSTLLTAI-----------------GE-IEASDMSSLEAVISCDEERLKLEK 144
++G +G GK+TL+ A+ G I+A +M ++ A + D+ +
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT-- 113
Query: 145 EAEILGAQEDGGGEQLERVYERLEALDASTAEKRAA--EILYGLGFNK-----TMQAKKT 197
L +E + R+ R+ + EKR E+L LG K +
Sbjct: 114 ----LTVREHLMFQAHLRMPRRV-----TKKEKRERVDEVLQALGLRKCANTRIGVPGRV 164
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ SGG R R+A A L +P +L DEPT+ LD
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEA---CVWLEETLKKFDRILVVISHSQD 257
SGG + ++ + R L P IL+LDEPT +D+ A L L K D+ +++IS
Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452
Query: 258 FLNGVCTNIIHMQNKQL 274
L G+ I+ M N +
Sbjct: 453 ELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 46/180 (25%)
Query: 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAE 147
+ + ++ + + G++G GKSTL+ + +L
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASG---------------KARLISFLP 55
Query: 148 ILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207
+ +QL+ + I GLG+ Q T SGG R
Sbjct: 56 KFSRNKLIFIDQLQFL------------------IDVGLGYLTLGQKLST--LSGGELQR 95
Query: 208 IALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKFDRI------LVVISHSQDFL 259
+ LA LF P T+ +LDEP+ L + + + L+ + +++I H+ D L
Sbjct: 96 VKLASELFSEPPGTLFILDEPSTGLHQQD---INQLLEVIKGLIDLGNTVILIEHNLDVL 152
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 372 VTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLK-----LMTGDLVPLDGMVR 425
+T YT + ++L F V+ RV L+G G+GKSTLL L T + +DG+
Sbjct: 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGV-- 1280
Query: 426 RHNHLRIAQFHQHLA---EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP 482
N + + + + +K+ + + + Y +E++ GL + P
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340
Query: 483 MK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530
K LS+G + + A + +LLLDEP+ HLD T+ + + L +
Sbjct: 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDG--------------MVRRHNHLRIAQFHQH--L 439
V L+GPNGAGK+T ++ G LV D M +R L I Q +
Sbjct: 33 VGLLGPNGAGKTTTFYMIVG-LVRPDSGKILLDDEDITKLPMHKR-ARLGIGYLPQEASI 90
Query: 440 AEKL---DMDMSALQYMIKEYPGNEEEKMRAA--IGRFGLTGKAQVMPMKNLSDGQRSRV 494
KL D M+ L+ + ++ E K + F +T + +LS G+R RV
Sbjct: 91 FRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRV 148
Query: 495 VFAWLAYRQPHMLLLDEP 512
A P +LLDEP
Sbjct: 149 EIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 90 DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAV----ISCDE 137
D +L G G++G +G GK+TLL I G + M + +S E
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT-YRMRDGQPRDLYTMSEAE 82
Query: 138 ERLKLEKE--------AEILGAQEDGGGEQLERVYERLEALDA---STAEKRAAEILYGL 186
R L E + L Q GG + ERL A+ A A + L +
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGN----IGERLMAIGARHYGNIRAEAQDWLEEV 138
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
+ R FSGG + R+ +AR L P ++ +DEPT LD+
Sbjct: 139 EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184
|
Length = 258 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK--KFDRILVVISH 254
SGG + R+ +AR + I P +LLLDEP + LD + +EE + K D +V+++H
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
++ D SGG R R LA L + ++LLDEPT +LD+
Sbjct: 134 RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 397 ALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNHL-RIAQFHQHLA-----EKLDMDMS 448
L+G NGAGK+T K++TGD + D V + L I+ HQ++ + +D ++
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028
Query: 449 ALQYM-----IKEYPGNEEEKMRA-AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502
+++ ++ P E EK+ +I GL+ A + S G + ++ A
Sbjct: 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-GTYSGGNKRKLSTAIALIG 2087
Query: 503 QPHMLLLDEPTNHLD 517
P ++LLDEPT +D
Sbjct: 2088 CPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 41/194 (21%)
Query: 364 PPV--LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTL-------LKLM 413
PP ++F Y D +L+ ++++ + +V +VG GAGKS+L +
Sbjct: 1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 414 TGDLVPLDGM----VRRHNHLR-----IAQFHQHLAEKLDMDMSAL-QYMIKEYPGNEEE 463
G+++ +DG+ + H+ LR I Q + L M++ QY +E
Sbjct: 1340 EGEII-IDGLNIAKIGLHD-LRFKITIIPQDPVLFSGSLRMNLDPFSQY--------SDE 1389
Query: 464 KMRAAIGRFGLTGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513
++ A+ L +P K NLS GQR V A R+ +L+LDE T
Sbjct: 1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449
Query: 514 NHLDIETIDSLAEA 527
+D+ET D+L ++
Sbjct: 1450 AAVDLET-DNLIQS 1462
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 61/175 (34%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVP---LDGMVRRHNH---------- 429
+LDF + AL+GP+G+GKSTLL+ + DL P + G + + H
Sbjct: 25 SLDF--YPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82
Query: 430 ---------------------------LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEE 462
LR+ + LD A++ +K +E
Sbjct: 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK--QVLD---EAVEKSLKGASIWDE 137
Query: 463 EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
K R GL+G GQ+ RV A + P ++LLDEPT+ LD
Sbjct: 138 VKDRLHDSALGLSG------------GQQQRVCIARVLATSPKIILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
S G R + LARAL IL+LDE T +D E +++T+++ D ++ I+H
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.001
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 54/200 (27%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--------------------------DL 417
KN+ + +S AL+GP+G GKST ++ + D+
Sbjct: 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88
Query: 418 VPLD---GMV-RRHNHLRIAQFHQ-------HLAEKLDMDMSALQYMIKEYPGNEEEKMR 466
V L GMV ++ N ++ + H A K D+D G E +R
Sbjct: 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD------------GVVENALR 136
Query: 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDS 523
+A + T P +LS GQ+ R+ A +P ++L DEPT+ LD I T I+
Sbjct: 137 SA-ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195
Query: 524 LAEALNEWDGGLVLVSHDFR 543
L L + D +V+V+H+ +
Sbjct: 196 LIMNLKK-DYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 34/206 (16%)
Query: 73 IRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEA 123
I + ++VT+ +GH + D+ + G L+G+NG GKSTL A+ G+I
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 124 SDMS-------SLEAVISCDEER----LKLEKEAEILGAQEDGGGEQLERVYERLEALDA 172
+L A + EE L ++ ++G G + + +R + + A
Sbjct: 67 LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR-QIVTA 125
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
+ A E + ++ + SGG + R+ LARA+ ++LLDEP +D+
Sbjct: 126 ALARVDMVEFRH----------RQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
Query: 233 EA---CVWLEETLKKFDRILVVISHS 255
+ + L L+ + ++V +H+
Sbjct: 176 KTEARIISLLRELRDEGKTMLVSTHN 201
|
Length = 272 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 45/218 (20%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVP----- 419
L+ + V FG N K++ +S A++GP+G GKST+L+ + DLVP
Sbjct: 7 LEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVT 63
Query: 420 ----LDG-----------MVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN---- 460
LD +RR + + + A MS +I Y N
Sbjct: 64 GKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPA------MSIYDNVIAGYKLNGRVN 117
Query: 461 ---EEEKMRAAIGRFGLTGKAQVMPMKN---LSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+E + +++ R L + + N LS GQ+ R+ A +P ++L+DEP +
Sbjct: 118 RSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177
Query: 515 HLD-IET--IDSLAEALNEWDGGLVLVSHDFRLINQVA 549
LD I T I+ L E L E +++V+H+ + +V+
Sbjct: 178 ALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVS 214
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 45/218 (20%), Positives = 92/218 (42%), Gaps = 22/218 (10%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEAS 124
I + + +F + L + G + LLG NG GKSTL+ + G I +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 125 DMS--------SLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAE 176
+++ + + I + L + E +L + G L + + +D
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVL--ENLYIGRHLTKKVCGVNIIDWREMR 123
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL---DLE 233
RAA +L +G + +K + S + + +A+ L ++ ++++DEPT+ L +++
Sbjct: 124 VRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 234 ACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271
+ L+K +V ISH + +C M++
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKD 220
|
Length = 510 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 33/165 (20%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR- 425
L+ V F Y + ++ + V L+G NG+GKSTL L+TG P G +
Sbjct: 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 426 -----------RHNHLRIAQFHQ-HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFG 473
+ L A F HL ++L L K P E+ ++ R
Sbjct: 383 DGKPVSAEQLEDYRKLFSAVFSDYHLFDQL------LGPEGKASPQLIEKWLQ----RLE 432
Query: 474 LTGKAQVM-----PMKNLSDGQRSRV--VFAWLAYRQPHMLLLDE 511
L K + +K LS GQ+ R+ + A L R +L+LDE
Sbjct: 433 LAHKTSLNDGRFSNLK-LSTGQKKRLALLLALLEERD--ILVLDE 474
|
Length = 546 |
| >gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 470 GRFGLT--GKAQVMPMKN--LSDGQRSRVVFAWLA----YRQPHMLLLDEPTNHLDIETI 521
GR L + + P ++ LSDG A R P +LLLDEP L + +
Sbjct: 251 GRIELKWQDRGFLDPFRDRELSDGTLR--FLALATLLLSPRPPPLLLLDEPETSLHPDLL 308
Query: 522 DSLAEALNEW--DGGLVLVSHDFRLINQV-AHEIWVC 555
+LAE + +++ +H RL+N V H ++
Sbjct: 309 PALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFWL 345
|
Length = 373 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121
+R E+L+V + ++ D L L G+ L+G NGCGKSTLL +
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51
|
Length = 255 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 396 VALVGPNGAGKSTLLKLMTG----------------DLVPLDGMVRRHNHLRIAQFHQHL 439
V L+GPNGAGK+T ++ G L+PL RR I Q
Sbjct: 32 VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG----IGYLPQEA 87
Query: 440 A-----EKLDMDMSALQYMIKEYPGNEEEKMRAA--IGRFGLTGKAQVMPMKNLSDGQRS 492
+ D M+ LQ I++ E+ + RA + F + M ++LS G+R
Sbjct: 88 SIFRRLSVYDNLMAVLQ--IRDDLSAEQREDRANELMEEFHIEHLRDSMG-QSLSGGERR 144
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLD-IETID--SLAEALNEWDGGLVLVSHDFR 543
RV A P +LLDEP +D I ID + E L + G+++ H+ R
Sbjct: 145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198
|
Length = 241 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 367 LQFVEVTFGY-TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414
++F VTF Y + +N++F + VALVG +G+GKST+ L+T
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390
|
Length = 582 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV- 424
VL+ + FG N + NL+ + + V L+GP+G GK+T+L+L+ G P +G +
Sbjct: 8 VLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64
Query: 425 --------RRHNHLRIAQFHQHLAEKLDMDMSA---LQYMIKEYPGNEEE---KMRAAIG 470
R I Q A L MS + Y +K +EE +++ A+
Sbjct: 65 IDGEDVTHRSIQQRDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE 122
Query: 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI-------ETIDS 523
L G + +S GQ+ RV A +P +LL DEP ++LD E I
Sbjct: 123 LVDLAGFEDRY-VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRE 181
Query: 524 LAEALN 529
L + N
Sbjct: 182 LQQQFN 187
|
Length = 351 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 41/205 (20%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG----DLVPLDGMVRRHNHLRI-A 433
+N I K L+ ++ A++GPNG+GKSTL K++ G ++ D + + + L +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 434 QFHQHLAEKLDMDMSALQYMIKEYPG-NEEEKMRAA---------------IGRFG-LTG 476
+ HL L A QY I E PG + + +R A + +
Sbjct: 79 EERAHLGIFL-----AFQYPI-EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINE 132
Query: 477 KAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
K +++ M S G++ R +A + +LDE + LDI+ + +AE
Sbjct: 133 KLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 527 ALNEW---DGGLVLVSHDFRLINQV 548
+N+ + ++L++H RL++ +
Sbjct: 193 GINKLMTSENSIILITHYQRLLDYI 217
|
Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 73 IRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLL-------------TAI 118
IR+E++S ++ G + + L + G G++G NG GKSTL +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 119 GEIEASDMSSLEAVISCDEERLKL------EKEAEILG--AQED--GGGEQLERVYERLE 168
I+ D S L+ + KL E + +G +ED G E L
Sbjct: 62 SGIDTGDFSKLQGI-------RKLVGIVFQNPETQFVGRTVEEDLAFGPENL-------- 106
Query: 169 ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
L KR L +G K + + + SGG +ALA L + P L+ DE T+
Sbjct: 107 CLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165
Query: 229 HLDLEACVWLEETLKKFDR---ILVVISHS 255
LD ++ + + E +KK +V I+H+
Sbjct: 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHN 195
|
Length = 274 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 47/198 (23%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVR---RHNHLR-IAQF---------------- 435
+ +VG +G+GK+TLL ++ L P G V R LR +
Sbjct: 35 LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA-------IGRFGLTGKAQV-MPMKNLS 487
HQH + L M +SA GN E++ A I +V + +
Sbjct: 95 HQHPRDGLRMQVSA--------GGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARID 146
Query: 488 D-------GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEALNEWDGGLV 536
D G + R+ A P ++ +DEPT LD+ +D L + E +V
Sbjct: 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206
Query: 537 LVSHDFRLINQVAHEIWV 554
+V+HD + +AH + V
Sbjct: 207 IVTHDLAVARLLAHRLLV 224
|
Length = 258 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHS 255
SGG + R+ +ARA+ ++P ++L+DEP + LD A +EE + + + +V+++HS
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHS 221
|
Length = 267 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 57/199 (28%)
Query: 397 ALVGPNGAGKSTLLKLMT-------GDLVPLDGM-VRRHNHLRIAQFHQH---------- 438
A+VG +G GKSTL +L+T G+L G + + + Q
Sbjct: 45 AVVGESGCGKSTLARLLTMIETPTGGELY-YQGQDLLKADPEAQKLLRQKIQIVFQNPYG 103
Query: 439 -----------LAEKLDM--DMSALQYMIKEYPGNEEEKMRAAIGRFGL-TGKAQVMP-M 483
L E L + +SA + EK A + + GL P M
Sbjct: 104 SLNPRKKVGQILEEPLLINTSLSAAE---------RREKALAMMAKVGLRPEHYDRYPHM 154
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL-AEALN-------EWDGGL 535
S GQR R+ A P +++ DEP + LD+ S+ A+ LN E
Sbjct: 155 --FSGGQRQRIAIARALMLDPDVVVADEPVSALDV----SVQAQVLNLMMDLQQELGLSY 208
Query: 536 VLVSHDFRLINQVAHEIWV 554
V +SHD ++ +A E+ V
Sbjct: 209 VFISHDLSVVEHIADEVMV 227
|
Length = 327 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 64/223 (28%)
Query: 73 IRIESLSVTFHGHD--LIVDSELELNYGRRYGLLGLNGCGKST---LLTAI-----GEIE 122
I++E++S ++ + + + E+N G +LG NG GKST +LT + GEI+
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 123 ASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEI 182
++ + E ++ K+ I+ D +T E +I
Sbjct: 68 ------IDGITISKENLKEIRKKIGIIFQNPD-------------NQFIGATVE---DDI 105
Query: 183 LYGLGFNKTMQAKKTRD---------------------FSGGWRMRIALARALFINPTIL 221
+GL NK + KK +D SGG + R+A+A L +NP I+
Sbjct: 106 AFGLE-NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164
Query: 222 LLDEPTNHLD-------LEACVWLEETLKKFDRILVVISHSQD 257
+ DE T+ LD + V L +T KK L+ I+H D
Sbjct: 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKK---TLISITHDMD 204
|
Length = 271 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLE 233
D SGG R+A+A AL N T L DEP+ +LD+E
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAEALNEWDGGLVLVSHD 541
LS GQ+ RV A + +P L+ DEPT LD ++ I + + LN+ ++LV+HD
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 49/191 (25%)
Query: 397 ALVGPNGAGKSTLLKLMT--GDLVP---LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQ 451
AL+GP+G GKST L+ + DL+ ++G V +++ +K D+D+ L+
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG--------KNIYDK-DVDVVELR 84
Query: 452 Y---MIKEYP------------------GNEEEKMRAAIGRFGLTGKAQVMPMKN----- 485
M+ + P G +++K I + L A +K+
Sbjct: 85 KRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKS 144
Query: 486 ---LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IETI---DSLAEALNEWDGGLVLV 538
LS GQ+ R+ A +P ++L+DEPT+ LD I T+ D + E E+ +V+V
Sbjct: 145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIV 202
Query: 539 SHDFRLINQVA 549
+H+ + ++V+
Sbjct: 203 THNMQQASRVS 213
|
Length = 251 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.4 bits (91), Expect = 0.003
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF---INPTILLLDEPTNHLDLEACV 236
+ L+ + + S G + +AL AL ++LL+DEP N L +
Sbjct: 170 VKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLR 229
Query: 237 WLEETLKKFDRI---LVVISHSQDFLN 260
L E LK+ L+ +HS L+
Sbjct: 230 KLVELLKELSEKGAQLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
FSGG + R+ +AR L +P ++ +DEPT LD
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK--KFDRILVVISH 254
SGG + R+ +ARA+ + P +LL+DEP + LD + + +E+ + K D +V+++H
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205
|
Length = 258 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 397 ALVGPNGAGKSTLLKLMTG 415
ALVG NGAGKST++K++TG
Sbjct: 34 ALVGENGAGKSTMMKVLTG 52
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 198 RDF---SGGWRMRIALARAL------FINPTILLLDEPTNHLDL 232
RD+ SGG + R+ LAR L P LLLDEPT+ LDL
Sbjct: 130 RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 31/192 (16%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVP---LDGMV--RRHNHLR 431
++ KN++ + + A++GP+G GKST +K + +LVP G + R N
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 432 IAQFHQHLAEKLDMDMSA-----------LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV 480
+ + L + M + Y K + G +++K I L G A
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIH-GIKDKKTLDEIVEKSLRGAAIW 154
Query: 481 MPMKN--------LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-IET--IDSLAEALN 529
+K+ LS GQ+ R+ A +P ++L+DEPT+ LD I T ++ L + L
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 530 EWDGGLVLVSHD 541
+ D +++V+H+
Sbjct: 215 K-DYSIIIVTHN 225
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 16/59 (27%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR--ILVVISHS 255
+ SGG + R+ +AR + + P ++L+DEP + LD + + +EE +++ +++++H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 31/199 (15%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431
K+++ V AL+G NGAGKSTL+K+++G P G + +N L
Sbjct: 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
Query: 432 IAQFHQHLAEKLDMDMSALQYM-IKEYPGNE----------EEKMRAAI--GRFGLTGKA 478
I +Q L+ + +++ L+ + I + + E ++RAA+ R GL
Sbjct: 82 IGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG---GL 535
+ NLS + + A ++++DEPT+ L + +D L +N+ +
Sbjct: 140 DEK-VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAI 198
Query: 536 VLVSHDFRLINQVAHEIWV 554
V +SH I ++ V
Sbjct: 199 VYISHKLAEIRRICDRYTV 217
|
Length = 510 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 582 | |||
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-111 Score=872.29 Aligned_cols=578 Identities=63% Similarity=0.985 Sum_probs=505.9
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCchhHHHhhh--hhHhhhcCchHHHHHHHHhh--ccccccccccccccCCCccceEEe
Q 007982 1 MVSDASKKKALQKKAAAAAKRGGKAAAAAASS--KAAALQNGSAADKAASEMAA--MQISDRTCTGVLCSHPLSRDIRIE 76 (582)
Q Consensus 1 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~i~v~ 76 (582)
||++++|.|+.+|++++.++++.++.....-+ ...++. ..+.+..+..... ..+..|+++|++.|+|.+++++++
T Consensus 1 ~~~~~~k~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vd~~~~~l~~~~~~~~~~~~tg~l~s~~~s~dvk~~ 79 (614)
T KOG0927|consen 1 MPSDASKLKSAAKKAAAKARKGRKSKPSRKPSTNVAAASE-ETEVDALADELESLELIAKARSVTGNLFSHPISRDVKIE 79 (614)
T ss_pred CccchHHHHHHHhhhhhccccccccCcccccCcccccccc-chhhHHHHhhhHHHHhHHhhhhcccccccCcccccceee
Confidence 79999999999999877666544311111000 000000 0111222222211 225689999999999999999999
Q ss_pred eeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCcee-----------------eee-echHH
Q 007982 77 SLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE-----------------AVI-SCDEE 138 (582)
Q Consensus 77 nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~-----------------~~i-~~~~~ 138 (582)
|++++|.++.+++|++|++++|++|||+|+|||||||+|++|++-..|....+. .++ ..+..
T Consensus 80 sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e 159 (614)
T KOG0927|consen 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHE 159 (614)
T ss_pred eeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999875554222110 001 11111
Q ss_pred HHHHHHHHHHhccc-cCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 139 RLKLEKEAEILGAQ-EDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 139 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+....+.+... +........+++.++..++.+.++.++..+|.++|+...++++.+.+||||||+|++|||+|+.+
T Consensus 160 ~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~k 239 (614)
T KOG0927|consen 160 RKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQK 239 (614)
T ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcC
Confidence 22233333333222 22234456678888888999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhcCc-EEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKFDR-ILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQM 296 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~ 296 (582)
|++|||||||||||++++.||.++|.++.. ++|++||+++|++.+|++|+.|+++++++|+|||++|..++.+..++|+
T Consensus 240 P~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q~ 319 (614)
T KOG0927|consen 240 PDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEENQM 319 (614)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHHHHHhHHHH
Confidence 999999999999999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEe
Q 007982 297 KQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGY 376 (582)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y 376 (582)
++|.|+|+++.+++++++++|+++++..++++++++.+++|.+.++++.+..++++.|+|+.++..|+|++.+.|++|.|
T Consensus 320 K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y 399 (614)
T KOG0927|consen 320 KAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGY 399 (614)
T ss_pred HHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc
Q 007982 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE 456 (582)
Q Consensus 377 ~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 456 (582)
+++..++++++|.|+.++++|+|||||||||||||+++|.+.|+.|.|+.+.+..++++.|+....++++.++.++++..
T Consensus 400 ~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~ 479 (614)
T KOG0927|consen 400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPK 479 (614)
T ss_pred CCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHh
Confidence 87668999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceE
Q 007982 457 YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL 535 (582)
Q Consensus 457 ~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tv 535 (582)
++. .+.+.++.+|++|||+++.+..|+++||+|||.||+|||+++..|+||||||||||||+++++.+.++|++|.++|
T Consensus 480 ~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggv 559 (614)
T KOG0927|consen 480 FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGV 559 (614)
T ss_pred ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCce
Confidence 874 6778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHHHcC
Q 007982 536 VLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKAG 579 (582)
Q Consensus 536 i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~ 579 (582)
|+||||+.++.+++++||++++|.++.|+|++..|++++++++.
T Consensus 560 v~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~ 603 (614)
T KOG0927|consen 560 VLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRA 603 (614)
T ss_pred eeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987653
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-96 Score=797.40 Aligned_cols=499 Identities=41% Similarity=0.658 Sum_probs=422.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee----eechHHHH------H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV----ISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~----i~~~~~~~------~ 141 (582)
+|+++|++++|+++.+|+++||+|.+|++|||||+||||||||||+|+|...++.|.+... +.+-.+.. .
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCcc
Confidence 7999999999999999999999999999999999999999999999999887776643211 11110000 0
Q ss_pred --------------HHHHHHHhcccc-CCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHH
Q 007982 142 --------------LEKEAEILGAQE-DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRM 206 (582)
Q Consensus 142 --------------~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrq 206 (582)
.....+.+.... ......+..+...+..++.+..+.++..+|..+|++.. ++++++||||||+
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r~ 160 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRR 160 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHHHHH
Confidence 000001110000 00111122233334445567888999999999999864 7899999999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||+||+||+.+|++|||||||||||.+++.||.++|+++..|+|+||||++|++.+|++|+.++.|++..|.|||+.|.+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC-CCCcccccCceeEEEeccCC-CCCC
Q 007982 287 TRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG-GLTEKVVKDKVLVFRFVDVG-KLPP 364 (582)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 364 (582)
.+.+....+.+.+..++++++++.+++.++.. .+..+++++++.+.+++|... ....+....++..+.|+... ..+.
T Consensus 241 ~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~-~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~ 319 (530)
T COG0488 241 QKAERLRQEAAAYEKQQKELAKEQEWIRRGKA-AASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCC
Confidence 99888888888888889999999999998875 334457899999999999853 22222333444556776665 3678
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
++++++|+++.|++++++++++||.|.+|+++||+||||+|||||||+|+|...|.+|+|.+....+++|++|+.... .
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l-~ 398 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL-D 398 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc-C
Confidence 899999999999765789999999999999999999999999999999999999999999998889999999997543 3
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
.+.++.+++...++......++.+|++|++++....+|+..||||||.||+||++++.+|+||||||||||||+++++.|
T Consensus 399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence 67799999987766545778999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
.++|.+|.+|||+||||.+|+.++|++||++++ ++..|.|++++|.+...
T Consensus 479 e~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~~ 528 (530)
T COG0488 479 EEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKK 528 (530)
T ss_pred HHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhhc
Confidence 999999999999999999999999999999999 88888999999998653
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-90 Score=774.88 Aligned_cols=497 Identities=36% Similarity=0.620 Sum_probs=394.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee--e--eechHH-HHHH-HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA--V--ISCDEE-RLKL-EKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~--~--i~~~~~-~~~~-~~~ 145 (582)
+|+++||+++|+++.+|+|+||+|++|+++|||||||||||||||+|+|+.+|+.|.+.. . +.+..+ .... ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 488999999999999999999999999999999999999999999999998887665321 0 110000 0000 000
Q ss_pred HHHhcccc---------------CCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 146 AEILGAQE---------------DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 146 ~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
...+.... ......+..+...+...+.+..+.++.++|+.+||.....++++.+|||||||||+|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 00000000 000000000111111122334567889999999996445688999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSE 290 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 290 (582)
||||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..|.|+|+.|...+..
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~ 240 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRAT 240 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999987666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEE
Q 007982 291 LEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFV 370 (582)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (582)
....+.+.|..++.+++++..++.++.. .+...++++++.+.++++.... +....+...|.|+.+...+.++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~r~~~-~a~~~~~a~~r~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (638)
T PRK10636 241 RLAQQQAMYESQQERVAHLQSYIDRFRA-KATKAKQAQSRIKMLERMELIA---PAHVDNPFHFSFRAPESLPNPLLKME 316 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhccc---ccccCCceeEecCCCccCCCceEEEE
Confidence 5666777888888888888888887643 2334567778887777765311 11112345566655544567899999
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHH
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSAL 450 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~ 450 (582)
|+++.|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+.....++|++|+....+....++.
T Consensus 317 ~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~ 395 (638)
T PRK10636 317 KVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPL 395 (638)
T ss_pred eeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHH
Confidence 99999964 67999999999999999999999999999999999999999999998666689999997433344455666
Q ss_pred HHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 451 QYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
+++....+......++.+|+.|++......+++++|||||||||+||++|+.+|+||||||||||||+.++..|.++|.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 475 (638)
T PRK10636 396 QHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID 475 (638)
T ss_pred HHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 65533222233567889999999975444567899999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 531 WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 531 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+++|||+||||++++..+||+|++|++|+++.+.|++++|.+.
T Consensus 476 ~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 476 FEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHH
Confidence 9889999999999999999999999999998889999999654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-87 Score=755.62 Aligned_cols=502 Identities=45% Similarity=0.792 Sum_probs=386.3
Q ss_pred CccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC---CCCCCceeee---e-----ec--
Q 007982 69 LSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE---ASDMSSLEAV---I-----SC-- 135 (582)
Q Consensus 69 ~~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~---~~~~~~~~~~---i-----~~-- 135 (582)
.+.+|+++|++++|+++.+|+|+||+|++|+++||||||||||||||++|+|.. .|+.+.+... + ..
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 456899999999999989999999999999999999999999999999999753 2222222100 0 00
Q ss_pred -----hHHHHHH-HHHHHHhcc----ccC--------------CCc---chHHHHHHHHHcCChhHHHHHHHHHHHhCCC
Q 007982 136 -----DEERLKL-EKEAEILGA----QED--------------GGG---EQLERVYERLEALDASTAEKRAAEILYGLGF 188 (582)
Q Consensus 136 -----~~~~~~~-~~~~~~~~~----~~~--------------~~~---~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl 188 (582)
+.....+ ......+.. +.. ... ..+..+++.+...+.+..+.++.++|..+||
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 0000000 000110100 000 000 1122334445555666788899999999999
Q ss_pred ChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEE
Q 007982 189 NKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIH 268 (582)
Q Consensus 189 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~ 268 (582)
.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.||.++|++++.|||+||||++++..+||+|++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 75667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCccccc
Q 007982 269 MQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVK 348 (582)
Q Consensus 269 l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (582)
|++|++..|.|+|+.|...+.+....+.+.|..++.+.++++.++.++... ++...+++++.+.++++... .....
T Consensus 414 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~-a~~~~~~~s~~k~l~~~~~~---~~~~~ 489 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYN-AKRASLVQSRIKALDRLGHV---DAVVN 489 (718)
T ss_pred EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHhhcchHHHHHhhh---hcccc
Confidence 999999989999999987766666667777777788888888777765431 12223344444444443211 01111
Q ss_pred CceeEEEeccCC-CCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 349 DKVLVFRFVDVG-KLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 349 ~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
.....+.++... ..+.++|+++|+++.|++++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~ 569 (718)
T PLN03073 490 DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569 (718)
T ss_pred CCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEEC
Confidence 112233443322 1235789999999999654579999999999999999999999999999999999999999999987
Q ss_pred CceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 428 NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 428 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
+...++|++|+....+....+....+...++....+.++++|+.||+.+....+++.+|||||||||+|||+++.+|++|
T Consensus 570 ~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 570 AKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred CceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 77789999997533222222222222222333345678899999999754445678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
||||||+|||+.++..+.+.+.++++|||+||||++++..+||++|+|++|+++.+.|++++|++.+
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~ 716 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHh
Confidence 9999999999999999999999888899999999999999999999999999987899999998765
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-89 Score=709.06 Aligned_cols=496 Identities=43% Similarity=0.712 Sum_probs=417.5
Q ss_pred ccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHh
Q 007982 70 SRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149 (582)
Q Consensus 70 ~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (582)
+.+|.+.+++..||++.+|++.++++..|.+|||+|+||+|||||||+|+.-.......-+.....+... .....
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~-----~~~~l 152 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEA-----LQSVL 152 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHH-----Hhhhh
Confidence 5689999999999999999999999999999999999999999999999841100000000000101000 00000
Q ss_pred ccccCCCcchHHHHHHHHHcCChh-HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC
Q 007982 150 GAQEDGGGEQLERVYERLEALDAS-TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228 (582)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~ 228 (582)
........-+.+.- .+... ..++....+|..+||+++++.+++++||||||+|++|||||+.+|+|||||||||
T Consensus 153 ----~~D~~~~dfl~~e~-~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTN 227 (582)
T KOG0062|consen 153 ----ESDTERLDFLAEEK-ELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTN 227 (582)
T ss_pred ----hccHHHHHHHHhhh-hhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcc
Confidence 00000001111110 01111 2233344499999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007982 229 HLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIAS 308 (582)
Q Consensus 229 ~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (582)
+||..+..||.++|..|+.|+|+||||..|++.+|+.||++++-++-+|.|||++|.+++.+...++...|..++...++
T Consensus 228 hLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h 307 (582)
T KOG0062|consen 228 HLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAH 307 (582)
T ss_pred cchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999988889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEecc-CCCCCCCeEEEEEEEEEecCCc-eeeEee
Q 007982 309 MKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVD-VGKLPPPVLQFVEVTFGYTPDN-LIYKNL 386 (582)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~-~~l~~v 386 (582)
++.++.+|.- .++.+...+|+.+.+.++.. -.++..+....|.||. .....+|++++.+|+|.|.++. +++.++
T Consensus 308 ~q~fid~FrY-na~ra~svqSRIk~L~kl~~---lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~ 383 (582)
T KOG0062|consen 308 LQVFIDKFRY-NAARASSVQSRIKMLGKLPA---LKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQL 383 (582)
T ss_pred HHHHHHHhcc-CcccchhHHHHHHHhccCCC---CCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhcc
Confidence 9999998863 23334477888887766533 2333344456788887 3466789999999999998766 688999
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHH
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (582)
++++...++++++|+||+||||++|++.|.+.|..|.+.+++..+++|+.|+-.+.++...+..+++...++...++.++
T Consensus 384 ~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r 463 (582)
T KOG0062|consen 384 GLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIR 463 (582)
T ss_pred CCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888899998888888889999
Q ss_pred HHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHH
Q 007982 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN 546 (582)
Q Consensus 467 ~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~ 546 (582)
+.++.|||++....+++.+||||||.||+||.+.+.+|++|+|||||||||.++..+|.++|+.|+++||+||||.+|+.
T Consensus 464 ~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 464 RHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred HHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCeEEEEcCCHHHHHHHHHHHcC
Q 007982 547 QVAHEIWVCENQAVTRWEGDIMDFKLHLKAKAG 579 (582)
Q Consensus 547 ~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~ 579 (582)
.+|+++|++++|+|+.++|.+.+|++.+..++.
T Consensus 544 ~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e~~ 576 (582)
T KOG0062|consen 544 SLCKELWVVEDGKVTPIEGGIDKYKKLLGAELR 576 (582)
T ss_pred hcCceeEEEcCCcEEeeeccHHHHHHHHHHHHh
Confidence 999999999999999999999999998877653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=750.12 Aligned_cols=492 Identities=29% Similarity=0.480 Sum_probs=382.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee----eec-hHH----H-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV----ISC-DEE----R-LK 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~----i~~-~~~----~-~~ 141 (582)
+|+++||+++|+++.+|+|+||+|++|+++||+|||||||||||++|+|+.+|+.|.+... +.. ... . ..
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 6999999999999999999999999999999999999999999999999988876654210 000 000 0 00
Q ss_pred HHHH--------------HHHhccc-cCCCc-chHH---HHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCCh
Q 007982 142 LEKE--------------AEILGAQ-EDGGG-EQLE---RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSG 202 (582)
Q Consensus 142 ~~~~--------------~~~~~~~-~~~~~-~~~~---~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSG 202 (582)
.... ...+... ..... ..+. .+...+...+....+.++.++|+.+||. .++++.+|||
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~LSg 159 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSSLSG 159 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhhcCH
Confidence 0000 0000000 00000 0000 0111111122234567889999999996 2689999999
Q ss_pred hHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChh
Q 007982 203 GWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 203 GqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 282 (582)
||||||+|||||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|+++.|.|+|+
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999998999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCC
Q 007982 283 QYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKL 362 (582)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (582)
.|...+.+..+.+...+..++.+++.+..++.+ +. .+...++ +++.+.++++..... ++....+...+.|+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~a~~~~~-~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 315 (635)
T PRK11147 240 QYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GI-KARRTRN-EGRVRALKALRRERS-ERREVMGTAKMQVEEASRS 315 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hhhhhhH-HHHHHHHHHhhhhhc-cccccCCceeEEeCCCCCC
Confidence 999876665555556666667777777777766 21 1222222 555555655542111 1111123345666554445
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhh
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK 442 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 442 (582)
+.++|+++|+++.|++ +++|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+.....++|++|+. ..
T Consensus 316 ~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~-~~ 393 (635)
T PRK11147 316 GKIVFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR-AE 393 (635)
T ss_pred CCceEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc-cc
Confidence 6779999999999964 679999999999999999999999999999999999999999999885456799999975 23
Q ss_pred cCCcccHHHHHHhcCC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 007982 443 LDMDMSALQYMIKEYP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518 (582)
Q Consensus 443 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 518 (582)
+....|+.+++..... ......++++|+.|++......+++.+|||||||||+|||+|+.+|+||||||||||||+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 5566788888754321 112446788999999975444567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEe-CCeEEEEcCCHHHHHH
Q 007982 519 ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE-NQAVTRWEGDIMDFKL 572 (582)
Q Consensus 519 ~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~-~G~i~~~~g~~~~~~~ 572 (582)
.++..|.++|+++++|||+||||++++..+||+|++|+ +|+++.|.|++++|.+
T Consensus 474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998999999999999999999999998 8999999999999965
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-84 Score=718.35 Aligned_cols=498 Identities=30% Similarity=0.557 Sum_probs=367.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee----eechHHH------HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV----ISCDEER------LK 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~----i~~~~~~------~~ 141 (582)
+|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+.+|+.|.+... +.+..+. ..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 4889999999998899999999999999999999999999999999999988876643210 1110000 00
Q ss_pred HHHHHH--------------HhccccCCC---cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH
Q 007982 142 LEKEAE--------------ILGAQEDGG---GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204 (582)
Q Consensus 142 ~~~~~~--------------~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 204 (582)
...... .+....... .....+....+..+.....+.++.++|+.+|+.....++++.+|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 000000 000000000 000011111111122233456788999999997544456899999999
Q ss_pred HHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 205 rqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||+|||||+.+|+||||||||++||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+++.+.|++++|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999997788999998
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCC
Q 007982 285 VQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPP 364 (582)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (582)
...+..........+...+.++..+..++.+... .+.....++++.+.++++...... ...... ..+.++.....+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 317 (530)
T PRK15064 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSA-NASKAKQATSRAKQIDKIKLEEVK-PSSRQN-PFIRFEQDKKLHR 317 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHhhccccccC-CccccC-ceeeCCCCCCCCC
Confidence 7654433333333444444455444444443211 111122233333333322111110 000000 1112222222245
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
++|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|.+...+.
T Consensus 318 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 318 NALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE 396 (530)
T ss_pred ceEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCC
Confidence 78999999999964 57999999999999999999999999999999999999999999998887789999998643344
Q ss_pred CcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 007982 445 MDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 445 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 523 (582)
...++.+++.... .....++++++|+.+|+.....++++.+|||||||||+|||+++.+|++|||||||+|||+.++..
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 476 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIES 476 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 4567777654321 122345688999999995333456779999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 524 LAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 524 l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+.+.|+++++|||+||||++++..+||+|++|++|+++.+.|++.++.+.
T Consensus 477 l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 477 LNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999889999999999999999999999999998789999988764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-83 Score=710.88 Aligned_cols=495 Identities=27% Similarity=0.413 Sum_probs=368.1
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee----eechHHH------H
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV----ISCDEER------L 140 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~----i~~~~~~------~ 140 (582)
+|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+... +.+-.+. .
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 85 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEK 85 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 799999999998 7899999999999999999999999999999999999988876654210 1110000 0
Q ss_pred HHHHHHHH-hc-------------cccCCCcc-------hHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCC
Q 007982 141 KLEKEAEI-LG-------------AQEDGGGE-------QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRD 199 (582)
Q Consensus 141 ~~~~~~~~-~~-------------~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 199 (582)
........ +. ........ ....+.+.+...+.+....++.++++.+|+. . .++++.+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~~~~~ 163 (556)
T PRK11819 86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDAKVTK 163 (556)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccCchhh
Confidence 00000000 00 00000000 0001111111222233456788999999995 3 5789999
Q ss_pred CChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcC
Q 007982 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTG 279 (582)
Q Consensus 200 LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g 279 (582)
|||||||||+|||||+.+|++||||||||+||+.++.++.++|++++.|||+||||++++..+||+|++|++|+++.+.|
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g 243 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEG 243 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999987899
Q ss_pred ChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccC
Q 007982 280 NFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDV 359 (582)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (582)
+|++|...+......+...+.+.+..+..+.+++.+.... + ....+++.+.++++...... ...+...+.++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 317 (556)
T PRK11819 244 NYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA--R-QAKSKARLARYEELLSEEYQ---KRNETNEIFIPPG 317 (556)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHHHhhccccc---ccCCCceeecCCC
Confidence 9999987654433334444444444554444444331100 0 00112222223332211100 0111122233332
Q ss_pred CCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhh
Q 007982 360 GKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHL 439 (582)
Q Consensus 360 ~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~ 439 (582)
.....++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|..
T Consensus 318 ~~~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 318 PRLGDKVIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred CCCCCeEEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCch
Confidence 2224578999999999964 579999999999999999999999999999999999999999999986555799999975
Q ss_pred hhhcCCcccHHHHHHhcCC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 440 AEKLDMDMSALQYMIKEYP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
. .+....++.+++..... ......++.+++.+|+.....++++.+|||||||||+|||+++.+|+||||||||+|
T Consensus 397 ~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 397 D-ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred h-hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 2 34456788887653211 112334668899999975333567799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeC-CeEEEEcCCHHHHHHHHHH
Q 007982 516 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN-QAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~~ 576 (582)
||+.++..+.+.|.++.+|||+||||++++..+||+|++|++ |++..|.|++++|.+...+
T Consensus 476 LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~~ 537 (556)
T PRK11819 476 LDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKKR 537 (556)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHHH
Confidence 999999999999999988999999999999999999999985 8888899999999887554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-83 Score=708.36 Aligned_cols=496 Identities=26% Similarity=0.428 Sum_probs=364.5
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee----eeechHHH------H
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA----VISCDEER------L 140 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~----~i~~~~~~------~ 140 (582)
+|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+.+|+.|.+.. .+.+-.+. .
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 799999999998 788999999999999999999999999999999999998887665321 01110000 0
Q ss_pred HHHHHHHH-hcc-------------c-cCCCcc------hHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCC
Q 007982 141 KLEKEAEI-LGA-------------Q-EDGGGE------QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRD 199 (582)
Q Consensus 141 ~~~~~~~~-~~~-------------~-~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 199 (582)
........ +.. . ...... ....+.+.+..++.+..+.++.++++.+|+.. .++++.+
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~ 161 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADVTK 161 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCchhh
Confidence 00000000 000 0 000000 00111222222232334567888999999953 4789999
Q ss_pred CChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcC
Q 007982 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTG 279 (582)
Q Consensus 200 LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g 279 (582)
|||||||||+|||||+.+|++||||||||+||+.++.+|.++|++++.|||+||||++++..+||++++|++|+++.+.|
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g 241 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEG 241 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999988899
Q ss_pred ChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccC
Q 007982 280 NFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDV 359 (582)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (582)
++++|........+.+...+...++++..+..++.+..... . ...+++.+..++...... ........+.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 315 (552)
T TIGR03719 242 NYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-Q--AKSKARLARYEELLSQEF---QKRNETAEIYIPPG 315 (552)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-H--HHHHHHHHHHHhhhhhcc---cccCCCceeecCCC
Confidence 99999875543333333334444444444333333211100 0 011111122222211100 00111112223322
Q ss_pred CCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhh
Q 007982 360 GKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHL 439 (582)
Q Consensus 360 ~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~ 439 (582)
.....++|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|..
T Consensus 316 ~~~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 316 PRLGDKVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred CCCCCeEEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCc
Confidence 2224578999999999964 579999999999999999999999999999999999999999999886555799999974
Q ss_pred hhhcCCcccHHHHHHhcCC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 440 AEKLDMDMSALQYMIKEYP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
. .+....++.+++..... ......++++++.+|+.....++++.+|||||||||+|||+|+.+|++|||||||+|
T Consensus 395 ~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 395 D-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred c-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 2 24456788887754221 112334678899999965433567799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeC-CeEEEEcCCHHHHHHHHHHH
Q 007982 516 LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN-QAVTRWEGDIMDFKLHLKAK 577 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~~~ 577 (582)
||+.++..+.+.|+++++|||+||||++++.++||+|++|++ |++..|.|++++|++...+.
T Consensus 474 LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~~~ 536 (552)
T TIGR03719 474 LDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRR 536 (552)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHHHH
Confidence 999999999999999988999999999999999999999986 68888999999998765543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-84 Score=650.60 Aligned_cols=499 Identities=44% Similarity=0.774 Sum_probs=406.8
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc---CCCCCCCceeee--ee-----------
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE---IEASDMSSLEAV--IS----------- 134 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~---~~~~~~~~~~~~--i~----------- 134 (582)
.+|+|+|++.+-.|+.+|.+.||.|-.|.+||||||||-||||||+.|+. -+||....+-.. +.
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence 47999999999999999999999999999999999999999999999972 334433222110 11
Q ss_pred -chHHHHHHHHHHHHhccccC----CCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHH
Q 007982 135 -CDEERLKLEKEAEILGAQED----GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 209 (582)
.+..+..+......+..+.. .....+..+++.+..+....++.+++.+|.++||+..+.+++...+|||||+||+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 11111111111112211111 1123445677778777778888999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRS 289 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 289 (582)
|||||+.+|.+|.|||||||||..+..||-++|..|++|++|||||..|+..+|+.||+|++.++.+|.|||..|.....
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~ 502 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYA 502 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH--HHHHHHHH-----------cCCCCccccc--CceeEE
Q 007982 290 ELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSK--EKTLAKME-----------RGGLTEKVVK--DKVLVF 354 (582)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~--~~~~~~ 354 (582)
.......+.|..++...+.++.. |. ++ .+++.. +....+.. ..+..+-+.+ +-.+.|
T Consensus 503 Qk~~e~~K~yekQeK~LkelKa~----Gk-S~---KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF 574 (807)
T KOG0066|consen 503 QKMQEHEKNYEKQEKQLKELKAE----GK-SA---KQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKF 574 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----Cc-ch---HHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEE
Confidence 44455566777777666655421 11 11 111111 11111111 0111111111 224678
Q ss_pred EeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEE
Q 007982 355 RFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQ 434 (582)
Q Consensus 355 ~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~ 434 (582)
+||++.++.+|+|-+++|+|.|++.+++|..++|.|...+++|||||||.||||||++|.|-+.|..|..+.+..++||+
T Consensus 575 ~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~ 654 (807)
T KOG0066|consen 575 QFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGW 654 (807)
T ss_pred ecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeec
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999988899999
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
+.|+....+....|+.+|+...|. ...+.++..|+.|||......-.+..|||||+.||+||-..+..|+|||||||||
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FN-lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFN-LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcC-CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 999999999999999999877653 3567899999999998766666788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHHHc
Q 007982 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKA 578 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~ 578 (582)
+||++++++|.++|++|.++|||||||..++.+..=..||+++..|-+.+|++++|++.+-..+
T Consensus 734 NLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaL 797 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEVLDAL 797 (807)
T ss_pred CcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877668999999999889999999998765443
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-81 Score=666.08 Aligned_cols=455 Identities=23% Similarity=0.327 Sum_probs=349.3
Q ss_pred ceEEeeeEEEECCe----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HHH-HH
Q 007982 72 DIRIESLSVTFHGH----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KLE-KE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~~-~~ 145 (582)
.|+|+||++.|... .+++||||+|.+||++||||+|||||||+.++|.|+.++......|.+.+++... .+. ..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 79999999999532 6999999999999999999999999999999999999887544445555444322 110 00
Q ss_pred H-----HHhc--cccCCCc--------chHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhh-hccCCCCChhHHHHHH
Q 007982 146 A-----EILG--AQEDGGG--------EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQ-AKKTRDFSGGWRMRIA 209 (582)
Q Consensus 146 ~-----~~~~--~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~~LSGGqrqRv~ 209 (582)
. ..++ +|.+... .++.+++.........+.++++.++|+.+||++... +++|++|||||||||.
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 1 1122 3332211 111222221222347788899999999999986544 3699999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+||+.+|++||+||||++||+..+.+|+++|+++ +.++|+||||+..+.++||||+||++|+++. .|..++.+
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i~ 243 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEIL 243 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999999999999998764 7899999999999999999999999999974 57766654
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCC
Q 007982 286 QTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPP 365 (582)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (582)
.+ +.|.|.+.--.+ . +.....+....... ......|
T Consensus 244 ~~----------------------------p~hpYT~~Ll~a---------~------p~~~~~~~~~~~~~-~~~~~~~ 279 (539)
T COG1123 244 SN----------------------------PQHPYTRGLLAA---------V------PRLGDEKIIRLPRR-GPLRAEP 279 (539)
T ss_pred hc----------------------------cCCcccHHHHhh---------C------CCcccccccccccc-cccccCc
Confidence 31 222222110000 0 00000000000000 0001578
Q ss_pred eEEEEEEEEEecC------C----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------
Q 007982 366 VLQFVEVTFGYTP------D----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~------~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------ 429 (582)
+++++|+++.|.. . ..+++||||+|.+||++||||+||||||||.|+|+|+++|++|.|.+.+.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 9999999999973 1 35799999999999999999999999999999999999999999988663
Q ss_pred -------eeEEEechhhhhhcCCcccHHHHHHhcC----C---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHH
Q 007982 430 -------LRIAQFHQHLAEKLDMDMSALQYMIKEY----P---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 495 (582)
..+.+++|++...+++..|+.+.+.... . ....+++.++|+.+||......+.+++|||||||||+
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRva 439 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHH
Confidence 2567789998888899999888765421 1 1123468889999999874334455899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||+.+|++||+||||+.||+-.+..+.++|.+ ++.|.|+||||+.++..+||||+||.+|+|++ .|+.++..
T Consensus 440 IARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE-~G~~~~v~ 518 (539)
T COG1123 440 IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE-EGPTEKVF 518 (539)
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE-eCCHHHHh
Confidence 99999999999999999999999999988888765 47899999999999999999999999999986 67777665
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
+
T Consensus 519 ~ 519 (539)
T COG1123 519 E 519 (539)
T ss_pred c
Confidence 4
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=671.55 Aligned_cols=438 Identities=24% Similarity=0.362 Sum_probs=335.6
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeeee-----------------
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAVI----------------- 133 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~i----------------- 133 (582)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+. +|+.|.+...-
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999889999999999999999999999999999999999986 46555432110
Q ss_pred -----e--c-----hH---HHHHHHHHHHHhc--ccc-C---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCCh
Q 007982 134 -----S--C-----DE---ERLKLEKEAEILG--AQE-D---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNK 190 (582)
Q Consensus 134 -----~--~-----~~---~~~~~~~~~~~~~--~~~-~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~ 190 (582)
. + +. ...........++ ++. . ......+++...+. .........++.++++.+|+.+
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 0 0 00 0000011112232 221 1 11233444433222 2334455678999999999974
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeE
Q 007982 191 TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNI 266 (582)
Q Consensus 191 ~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i 266 (582)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|
T Consensus 161 -~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 161 -RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred -hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 568899999999999999999999999999999999999999999998887654 679999999999999999999
Q ss_pred EEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCccc
Q 007982 267 IHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKV 346 (582)
Q Consensus 267 ~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (582)
++|++|+++. .|+++++..... ... . .+. . .
T Consensus 240 ~~l~~G~i~~-~g~~~~~~~~~~------------------------~~~----~--------------~~~-----~-~ 270 (520)
T TIGR03269 240 IWLENGEIKE-EGTPDEVVAVFM------------------------EGV----S--------------EVE-----K-E 270 (520)
T ss_pred EEEeCCEEee-ecCHHHHHHHHH------------------------hhc----h--------------hhc-----c-c
Confidence 9999999974 677766532100 000 0 000 0 0
Q ss_pred ccCceeEEEeccCCCCCCCeEEEEEEEEEecC----CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 347 VKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTP----DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
.....+.++|+++|+++.|++ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|
T Consensus 271 -----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G 339 (520)
T TIGR03269 271 -----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339 (520)
T ss_pred -----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 000113568999999999952 24699999999999999999999999999999999999999999
Q ss_pred EEEEc-Cc-----------------eeEEEechhhhhhcCCcccHHHHHHhc----CCCC-hHHHHHHHHHhcCCCCc--
Q 007982 423 MVRRH-NH-----------------LRIAQFHQHLAEKLDMDMSALQYMIKE----YPGN-EEEKMRAAIGRFGLTGK-- 477 (582)
Q Consensus 423 ~i~~~-~~-----------------~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~l~~~gl~~~-- 477 (582)
+|.+. +. ..++|++|... +....++.+++... .+.. ..+++.++++.+|+...
T Consensus 340 ~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 417 (520)
T TIGR03269 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKA 417 (520)
T ss_pred EEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccc
Confidence 99874 21 23789998753 44456787776431 1111 23467889999999752
Q ss_pred --cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCE
Q 007982 478 --AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 478 --~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~ 551 (582)
..++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++ .+.|||+||||++++.++||+
T Consensus 418 ~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 418 EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 23467799999999999999999999999999999999999999999999864 367999999999999999999
Q ss_pred EEEEeCCeEEEEcCCHHHHHHHH
Q 007982 552 IWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 552 i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
+++|++|+++ +.|+++++.+.+
T Consensus 498 i~~l~~G~i~-~~g~~~~~~~~~ 519 (520)
T TIGR03269 498 AALMRDGKIV-KIGDPEEIVEEL 519 (520)
T ss_pred EEEEECCEEE-EECCHHHHHhhc
Confidence 9999999996 578888776543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-78 Score=679.57 Aligned_cols=473 Identities=19% Similarity=0.242 Sum_probs=341.1
Q ss_pred ceEEeeeEEEEC----CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee-eeech----------
Q 007982 72 DIRIESLSVTFH----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA-VISCD---------- 136 (582)
Q Consensus 72 ~i~v~nls~~y~----~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~-~i~~~---------- 136 (582)
+|+++||+++|+ +..+|+|+||+|++|+++|||||||||||||+++|+|+.+++.|.+.. ...+.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 799999999996 257999999999999999999999999999999999999887664321 11110
Q ss_pred H-HHHHHHHHH-HHhc--cccC-----CCcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCCh--hhhhccCCCCCh
Q 007982 137 E-ERLKLEKEA-EILG--AQED-----GGGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNK--TMQAKKTRDFSG 202 (582)
Q Consensus 137 ~-~~~~~~~~~-~~~~--~~~~-----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSG 202 (582)
. ......... ..++ +|.+ +.....+++...+. .++....+.++.++|+.+||.. ...++++.+|||
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 0 000011111 1122 2322 11234444443322 2345556678999999999963 346889999999
Q ss_pred hHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEc
Q 007982 203 GWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT 278 (582)
Q Consensus 203 GqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~ 278 (582)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ ..
T Consensus 172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~ 250 (623)
T PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ET 250 (623)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-cc
Confidence 9999999999999999999999999999999999999888754 679999999999999999999999999997 46
Q ss_pred CChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEecc
Q 007982 279 GNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVD 358 (582)
Q Consensus 279 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (582)
|+++++...... .|. +.++......... .........+... ......... ..+..
T Consensus 251 g~~~~~~~~~~~-------~~~---------~~l~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~--~~~~~ 305 (623)
T PRK10261 251 GSVEQIFHAPQH-------PYT---------RALLAAVPQLGAM---KGLDYPRRFPLIS----LEHPAKQEP--PIEQD 305 (623)
T ss_pred CCHHHhhcCCCC-------hhh---------hhhhhccCccccc---ccccCCccccccc----cccccccCc--ccccc
Confidence 777766421100 000 0000000000000 0000000000000 000000000 00000
Q ss_pred CCCCCCCeEEEEEEEEEecC----------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 359 VGKLPPPVLQFVEVTFGYTP----------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 359 ~~~~~~~~l~~~~l~~~y~~----------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
......++|+++|+++.|+. ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+.+
T Consensus 306 ~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g 385 (623)
T PRK10261 306 TVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred cccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC
Confidence 00113578999999999952 14689999999999999999999999999999999999999999998755
Q ss_pred c--------------eeEEEechhhhhhcCCcccHHHHHHhc---CC---C-ChHHHHHHHHHhcCCCCccccCCCCCCC
Q 007982 429 H--------------LRIAQFHQHLAEKLDMDMSALQYMIKE---YP---G-NEEEKMRAAIGRFGLTGKAQVMPMKNLS 487 (582)
Q Consensus 429 ~--------------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LS 487 (582)
. ..++|++|+....+....++.+++... .. . ...+++.++|+.+||.....++++.+||
T Consensus 386 ~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 386 QRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred EECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 2 248999998643455667777765431 11 1 1235678899999996333345678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEE
Q 007982 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRW 563 (582)
Q Consensus 488 gGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 563 (582)
|||||||+|||||+.+|+||||||||++||+.++..+.++|++ .+.|||+||||++++.++||||++|++|+++ .
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~ 544 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV-E 544 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-E
Confidence 9999999999999999999999999999999999999999865 3679999999999999999999999999997 4
Q ss_pred cCCHHHHH
Q 007982 564 EGDIMDFK 571 (582)
Q Consensus 564 ~g~~~~~~ 571 (582)
.|+.+++.
T Consensus 545 ~g~~~~i~ 552 (623)
T PRK10261 545 IGPRRAVF 552 (623)
T ss_pred ecCHHHHh
Confidence 78888764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-78 Score=670.19 Aligned_cols=447 Identities=23% Similarity=0.325 Sum_probs=333.5
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC-CceeeeeechHHHH------
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM-SSLEAVISCDEERL------ 140 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~-~~~~~~i~~~~~~~------ 140 (582)
+|+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+.++.. +...|.+.+++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 7999999999963 579999999999999999999999999999999999987520 00122232222111
Q ss_pred HHHHHH-HHhc--cccCC--C---cchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChh--hhhccCCCCChhHHHH
Q 007982 141 KLEKEA-EILG--AQEDG--G---GEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKT--MQAKKTRDFSGGWRMR 207 (582)
Q Consensus 141 ~~~~~~-~~~~--~~~~~--~---~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqR 207 (582)
...... ..++ +|... . ....+.+...+. ..+......++.++++.+|+.+. ..++++.+||||||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 001111 1222 22211 0 111122222111 23444556788999999999642 3578999999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
|+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++. .|..++
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~~ 243 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE-QNRAAT 243 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence 99999999999999999999999999999999999763 6799999999999999999999999999975 455544
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCC
Q 007982 284 YVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLP 363 (582)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (582)
+...... .+ .+.+. .. .... .. .. ....+
T Consensus 244 ~~~~~~~-------~~---------~~~~~---------------------~~----~~~~-----~~--~~---~~~~~ 272 (529)
T PRK15134 244 LFSAPTH-------PY---------TQKLL---------------------NS----EPSG-----DP--VP---LPEPA 272 (529)
T ss_pred HhhCCCC-------HH---------HHHHH---------------------Hh----Cccc-----cc--cc---cCCCC
Confidence 4321000 00 00000 00 0000 00 00 01123
Q ss_pred CCeEEEEEEEEEecC----------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----
Q 007982 364 PPVLQFVEVTFGYTP----------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~----------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---- 429 (582)
.++|+++|+++.|+. ++.+|+++||+|.+|+++||+||||||||||+++|+|++ |++|+|.+.+.
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 568999999999952 357999999999999999999999999999999999998 58999987651
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHhc---C----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHH
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIKE---Y----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqk 491 (582)
..++|++|.....+....++.+++... + +.. ..+.+.++++.+|+.....++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 247899998633344556777766431 1 111 2356788999999974333567799999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCH
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDI 567 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 567 (582)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~ 510 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDC 510 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCH
Confidence 9999999999999999999999999999999999998753 579999999999999999999999999996 57888
Q ss_pred HHHHH
Q 007982 568 MDFKL 572 (582)
Q Consensus 568 ~~~~~ 572 (582)
+++..
T Consensus 511 ~~~~~ 515 (529)
T PRK15134 511 ERVFA 515 (529)
T ss_pred HHHhc
Confidence 87753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-78 Score=666.30 Aligned_cols=438 Identities=18% Similarity=0.258 Sum_probs=331.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCCceeeeeechHHHH---HHHHH-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS--DMSSLEAVISCDEERL---KLEKE- 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~--~~~~~~~~i~~~~~~~---~~~~~- 145 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.++ +.|.+ .+++... .....
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i----~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI----IFEGEELQASNIRDTE 80 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE----EECCEECCCCCHHHHH
Confidence 79999999999988999999999999999999999999999999999999875 44432 2222111 00000
Q ss_pred HHHhc--cccC---CCcchHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILG--AQED---GGGEQLERVYERLE-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~--~~~~---~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...++ +|.. ......+++..... ..+......++.++++.+|+.. ..++++.+|||||||||+|||||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHh
Confidence 11122 2221 11122333322111 0122344567899999999964 568899999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELE 292 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~ 292 (582)
.+|++|||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++... .
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~~--~-- 234 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAAGMTED--D-- 234 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-ecccccCCHH--H--
Confidence 999999999999999999999999998765 5799999999999999999999999999874 4554433210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEE
Q 007982 293 ENQMKQYKWEQEQIASMKEYIARF-GHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVE 371 (582)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (582)
.+..+ +. ...... +. .. ...+.++|+++|
T Consensus 235 -------------------~~~~~~~~----------------------~~~~~~-~~-------~~-~~~~~~~l~~~~ 264 (506)
T PRK13549 235 -------------------IITMMVGR----------------------ELTALY-PR-------EP-HTIGEVILEVRN 264 (506)
T ss_pred -------------------HHHHhhCc----------------------Cccccc-cc-------cc-cCCCCceEEEec
Confidence 00000 00 000000 00 00 012356899999
Q ss_pred EEEEec--CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEcCc------------eeEEEec
Q 007982 372 VTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRHNH------------LRIAQFH 436 (582)
Q Consensus 372 l~~~y~--~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~~~------------~~~~~~~ 436 (582)
+++.|+ ++..+|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+.+. ..++|++
T Consensus 265 l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 344 (506)
T PRK13549 265 LTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVP 344 (506)
T ss_pred CccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeC
Confidence 999994 23569999999999999999999999999999999999998 59999987542 2378999
Q ss_pred hhhh-hhcCCcccHHHHHHhc----CC-----CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 437 QHLA-EKLDMDMSALQYMIKE----YP-----GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 437 q~~~-~~~~~~~~~~~~~~~~----~~-----~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
|... ..+....++.+++... +. .. ..+.+.++++.+++.....++++.+|||||||||+|||||+.+|
T Consensus 345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p 424 (506)
T PRK13549 345 EDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNP 424 (506)
T ss_pred cchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCC
Confidence 8753 1234456777766421 11 11 23457889999999633335677999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++ +.|+.+++
T Consensus 425 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence 999999999999999999999887754 679999999999999999999999999996 57777766
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-78 Score=665.49 Aligned_cols=432 Identities=19% Similarity=0.257 Sum_probs=327.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHH-HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEK-EAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~-~~~ 147 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+. +++... .... ...
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~----~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT----INNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEE----ECCEECCCCCHHHHHHC
Confidence 79999999999988999999999999999999999999999999999999988765432 111110 0000 111
Q ss_pred Hhcc--ccCC---CcchHHHHHHHHH------c---CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 148 ILGA--QEDG---GGEQLERVYERLE------A---LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l~------~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
.+++ +... .....+++..... . .+......++.++++.+|+.+ ..++++.+|||||||||+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHH
Confidence 1222 2111 1122333321110 1 112334567889999999974 5688999999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSE 290 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 290 (582)
|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++... +
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~--~ 236 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVSND--D 236 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCCHH--H
Confidence 99999999999999999999999999998765 579999999999999999999999999996 56776654311 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEE
Q 007982 291 LEENQMKQYKWEQEQIASMKEYIARF-GHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQF 369 (582)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (582)
.+..+ +... .. ...... . .......+++|++
T Consensus 237 ---------------------~~~~~~~~~~-----------------~~-~~~~~~-~--------~~~~~~~~~~l~~ 268 (510)
T PRK09700 237 ---------------------IVRLMVGREL-----------------QN-RFNAMK-E--------NVSNLAHETVFEV 268 (510)
T ss_pred ---------------------HHHHhcCCCc-----------------cc-cccccc-c--------ccccCCCCcEEEE
Confidence 00000 0000 00 000000 0 0000113468999
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEech
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQ 437 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q 437 (582)
+|+++.|. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 269 ~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 269 RNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred eCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 99998763 3899999999999999999999999999999999999999999987652 24789998
Q ss_pred hhh-hhcCCcccHHHHHHhcC--------------CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 438 HLA-EKLDMDMSALQYMIKEY--------------PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 438 ~~~-~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
... ..+....++.+++.... .. .....+.++++.+|+.....++++.+|||||||||+|||||+
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 742 23444567777654211 00 112457789999999622345677999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999998765 6799999999999999999999999999974
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-78 Score=664.26 Aligned_cols=441 Identities=19% Similarity=0.242 Sum_probs=328.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH-H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA-E 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~-~ 147 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ...... .
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE----IGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEECCCCCHHHHHhC
Confidence 69999999999988999999999999999999999999999999999999988765432 221110 001111 1
Q ss_pred Hhc--cccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 148 ILG--AQEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 148 ~~~--~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
.++ ++... .....+++...+ ......++++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGL--PKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhccc--ccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 122 22211 112222222111 112234567889999999974 4688999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQY 299 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (582)
|||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.....
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~---------- 232 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLSTDDI---------- 232 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcCHHHH----------
Confidence 99999999999999999998765 679999999999999999999999999997 4678776542100
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEecc---CCCCCCCeEEEEEEEEEe
Q 007982 300 KWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVD---VGKLPPPVLQFVEVTFGY 376 (582)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~y 376 (582)
. ..+. +.... ...... . ...+.++. .....+++|+++|+++
T Consensus 233 ------~---~~~~---~~~~~---~~~~~~-------------~------~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 276 (510)
T PRK15439 233 ------I---QAIT---PAARE---KSLSAS-------------Q------KLWLELPGNRRQQAAGAPVLTVEDLTG-- 276 (510)
T ss_pred ------H---HHHh---Ccccc---cccccc-------------c------cccccccccccccCCCCceEEEeCCCC--
Confidence 0 0000 00000 000000 0 00000110 0012356899999983
Q ss_pred cCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEechhhh-hhc
Q 007982 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQHLA-EKL 443 (582)
Q Consensus 377 ~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q~~~-~~~ 443 (582)
.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++|++|.+. ..+
T Consensus 277 ----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 277 ----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGL 352 (510)
T ss_pred ----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCc
Confidence 1589999999999999999999999999999999999999999987652 24789988742 223
Q ss_pred CCcccHHHHHHhc------C--C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 444 DMDMSALQYMIKE------Y--P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 444 ~~~~~~~~~~~~~------~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
....++.+++... + . ....+.+.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~ 432 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence 4445666654211 1 1 11234578899999996223356779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 515 HLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ +.|+.+++.
T Consensus 433 gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~ 491 (510)
T PRK15439 433 GVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS-GALTGAAIN 491 (510)
T ss_pred CcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccCC
Confidence 99999999999998774 679999999999999999999999999997 466665544
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-77 Score=657.49 Aligned_cols=442 Identities=22% Similarity=0.303 Sum_probs=322.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+...- ..............+++
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQF-SHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECC-cccccCCHHHHHHHhce
Confidence 69999999999988899999999999999999999999999999999999988766542110 00000000111112221
Q ss_pred --ccCCCc--ch-----HHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 152 --QEDGGG--EQ-----LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 152 --~~~~~~--~~-----~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
+..... .. ...+.+.+. . ....+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQ-D-EVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcc-c-chhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 111100 00 011122111 1 1223567889999999964 5689999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQY 299 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (582)
|||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.....
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~~~~---------- 227 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGEREEILQQAL---------- 227 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCCHHHHhcchh----------
Confidence 99999999999999999999876 5799999999999999999999999999974 466654431100
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCC
Q 007982 300 KWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPD 379 (582)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~ 379 (582)
. .+... . . .+....... . .... . +.......++|+++|+++.|++
T Consensus 228 ------~-------~~~~~-~----------~----~~~~~~~~~-~-~~~~--~--~~~~~~~~~~l~~~~l~~~~~~- 272 (490)
T PRK10938 228 ------V-------AQLAH-S----------E----QLEGVQLPE-P-DEPS--A--RHALPANEPRIVLNNGVVSYND- 272 (490)
T ss_pred ------h-------hhhhh-h----------h----ccCccccCc-c-cccc--c--ccccCCCCceEEEeceEEEECC-
Confidence 0 00000 0 0 000000000 0 0000 0 0000123578999999999964
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEcCc------------eeEEEechhhhhhcCCc
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVRRHNH------------LRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~~~~~------------~~~~~~~q~~~~~~~~~ 446 (582)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+. ..++|++|.........
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 5799999999999999999999999999999999998875 6999987542 23788888753222222
Q ss_pred ccHHHHHHhc-------CC---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 007982 447 MSALQYMIKE-------YP---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516 (582)
Q Consensus 447 ~~~~~~~~~~-------~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 516 (582)
.++.+++... +. ....+.++++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||+||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gL 432 (490)
T PRK10938 353 TSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGL 432 (490)
T ss_pred CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 3444443211 11 1123467899999999862345677999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHh-hcCEEEEEeCCeEEEE
Q 007982 517 DIETIDSLAEALNEW---D-GGLVLVSHDFRLINQ-VAHEIWVCENQAVTRW 563 (582)
Q Consensus 517 D~~~~~~l~~~l~~~---~-~tvi~vsHd~~~~~~-~~d~i~~l~~G~i~~~ 563 (582)
|+.++..+.+.|+++ + .|||+||||++++.. +||++++|++|+++.+
T Consensus 433 D~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 433 DPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999998875 3 369999999999987 5999999999998754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-77 Score=657.35 Aligned_cols=440 Identities=19% Similarity=0.267 Sum_probs=326.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCCceeeeeechHHHH---HHHH-H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS--DMSSLEAVISCDEERL---KLEK-E 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~--~~~~~~~~i~~~~~~~---~~~~-~ 145 (582)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.++ +.|. +.+++... .... .
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~----i~~~g~~~~~~~~~~~~ 76 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE----IYWSGSPLKASNIRDTE 76 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE----EEECCEECCCCCHHHHH
Confidence 37899999999988999999999999999999999999999999999999875 4343 22222111 0001 1
Q ss_pred HHHhcc--ccCC---CcchHHHHHHHHHc------CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGA--QEDG---GGEQLERVYERLEA------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~--~~~~---~~~~~~~~~~~l~~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++ +... .....+++...... ........++.++++.+|+.....++++.+|||||||||+|||||
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred hCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 111222 2111 12233333221110 122344567889999999975433577999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSEL 291 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~ 291 (582)
+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.+ ++.+++... .
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~~--~- 232 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSED--D- 232 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee-cCcccCCHH--H-
Confidence 9999999999999999999999999998764 67999999999999999999999999999753 443322100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEE
Q 007982 292 EENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVE 371 (582)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (582)
.+..+ ......... .. .....+.++|+++|
T Consensus 233 --------------------~~~~~---------------------~~~~~~~~~-~~--------~~~~~~~~~l~~~~ 262 (500)
T TIGR02633 233 --------------------IITMM---------------------VGREITSLY-PH--------EPHEIGDVILEARN 262 (500)
T ss_pred --------------------HHHHH---------------------hCccccccc-cc--------cccCCCCceEEEeC
Confidence 00000 000000000 00 00012346899999
Q ss_pred EEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEcCc------------eeEEEec
Q 007982 372 VTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVRRHNH------------LRIAQFH 436 (582)
Q Consensus 372 l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~~~~~------------~~~~~~~ 436 (582)
+++.|++ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+.+. ..++|++
T Consensus 263 l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 342 (500)
T TIGR02633 263 LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVP 342 (500)
T ss_pred CcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcC
Confidence 9999842 34699999999999999999999999999999999999995 8999987541 2478999
Q ss_pred hhhh-hhcCCcccHHHHHHhc----CC---C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 437 QHLA-EKLDMDMSALQYMIKE----YP---G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 437 q~~~-~~~~~~~~~~~~~~~~----~~---~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
|.+. ..+....++.+++... +. . . ..+.+.++++.+++.....++++.+|||||||||+|||||+.+|
T Consensus 343 q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p 422 (500)
T TIGR02633 343 EDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNP 422 (500)
T ss_pred cchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCC
Confidence 8853 1234455666655321 10 0 1 23457889999999743345677999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ .+++..++
T Consensus 423 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 490 (500)
T TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK-GDFVNHAL 490 (500)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence 999999999999999999998877664 679999999999999999999999999996 45554444
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-77 Score=656.18 Aligned_cols=432 Identities=20% Similarity=0.287 Sum_probs=326.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 147 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... .......
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~----~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL----YLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEECCCCCHHHHHhC
Confidence 79999999999988999999999999999999999999999999999999988766432 221110 0000111
Q ss_pred Hhc--cccC---CCcchHHHHHHHHH------cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 148 ILG--AQED---GGGEQLERVYERLE------ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 148 ~~~--~~~~---~~~~~~~~~~~~l~------~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
.++ ++.. ......+++..... ..+....+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhc
Confidence 122 1211 11223333322111 1122334567889999999975 4688999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEE 293 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~ 293 (582)
+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+.+++... .
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~~--~--- 232 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVADLTED--S--- 232 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCcCCHH--H---
Confidence 99999999999999999999999888764 6799999999999999999999999999964 4544432110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEE
Q 007982 294 NQMKQYKWEQEQIASMKEYIARF-GHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEV 372 (582)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 372 (582)
....+ +. ...... + ..+ ....+++|+++|+
T Consensus 233 ------------------~~~~~~~~----------------------~~~~~~-~------~~~--~~~~~~~l~~~~l 263 (501)
T PRK10762 233 ------------------LIEMMVGR----------------------KLEDQY-P------RLD--KAPGEVRLKVDNL 263 (501)
T ss_pred ------------------HHHHhcCC----------------------Cccccc-c------ccc--cCCCCcEEEEeCc
Confidence 00000 00 000000 0 000 0112468999999
Q ss_pred EEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEechhhh
Q 007982 373 TFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQHLA 440 (582)
Q Consensus 373 ~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q~~~ 440 (582)
++ .+++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|.+.
T Consensus 264 ~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 337 (501)
T PRK10762 264 SG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRK 337 (501)
T ss_pred cc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccc
Confidence 84 2699999999999999999999999999999999999999999987652 24899999853
Q ss_pred -hhcCCcccHHHHHHhc----C-------CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 441 -EKLDMDMSALQYMIKE----Y-------PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 441 -~~~~~~~~~~~~~~~~----~-------~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
..+....++.+++... . .. ...++++++++.+|+.....++++.+|||||||||+|||||+.+|++|
T Consensus 338 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 338 RDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred cCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 2234456777765321 1 00 123457889999999532335677999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|+..++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS-GEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE-EEeccccC
Confidence 999999999999999999998876 469999999999999999999999999986 46666655
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-77 Score=654.26 Aligned_cols=436 Identities=21% Similarity=0.245 Sum_probs=325.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 147 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... .......
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL----IDGQEMRFASTTAALAA 79 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE----ECCEECCCCCHHHHHhC
Confidence 79999999999988999999999999999999999999999999999999988766532 111110 0001111
Q ss_pred Hhcc--ccC---CCcchHHHHHHHHH----c-CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 148 ILGA--QED---GGGEQLERVYERLE----A-LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 148 ~~~~--~~~---~~~~~~~~~~~~l~----~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
.+++ |.. ......+++..... . .+......++.++++.+|+.. ..++++.+|||||||||+|||||+.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 1221 211 11223333322110 1 123445567889999999974 45789999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEEN 294 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~ 294 (582)
|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++.....+... ....
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~--~~~~---- 232 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV--DRDQ---- 232 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccC--CHHH----
Confidence 9999999999999999999999998765 579999999999999999999999999986422111100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEE
Q 007982 295 QMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTF 374 (582)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 374 (582)
....+ ....... .. ... +....+++++++|+++
T Consensus 233 -----------------~~~~~---------------------~~~~~~~-~~-------~~~-~~~~~~~~l~~~~~~~ 265 (501)
T PRK11288 233 -----------------LVQAM---------------------VGREIGD-IY-------GYR-PRPLGEVRLRLDGLKG 265 (501)
T ss_pred -----------------HHHHh---------------------cCCCccc-cc-------ccc-ccCCCCcEEEEecccc
Confidence 00000 0000000 00 000 0011245799999984
Q ss_pred EecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEechhhh-h
Q 007982 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQHLA-E 441 (582)
Q Consensus 375 ~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q~~~-~ 441 (582)
. .+++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|... .
T Consensus 266 ~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 340 (501)
T PRK11288 266 P-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAE 340 (501)
T ss_pred C-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhC
Confidence 2 4899999999999999999999999999999999999999999987642 24788888753 2
Q ss_pred hcCCcccHHHHHHhcC-----------CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 442 KLDMDMSALQYMIKEY-----------PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 442 ~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
.+....++.+++.... .. ...+.++++++.+|+.....++++.+|||||||||+|||+|+.+|+||||
T Consensus 341 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 341 GIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 2444567777653210 11 11245788999999953334567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 484 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA-GELAREQAT 484 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence 9999999999999999988654 679999999999999999999999999987 467666654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=641.74 Aligned_cols=433 Identities=20% Similarity=0.252 Sum_probs=318.5
Q ss_pred EeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHHHHhc
Q 007982 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEAEILG 150 (582)
Q Consensus 75 v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ 150 (582)
++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ........++
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL----FQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEE----ECCEECCCCCHHHHHhCCEE
Confidence 36899999999999999999999999999999999999999999999988765432 222111 0001111122
Q ss_pred c--ccCC---CcchHHHHHHHHH---c--CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 151 A--QEDG---GGEQLERVYERLE---A--LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~---~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
+ +... .....+++..... . .+......++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~l 155 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKI 155 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 1 2111 1123333321111 1 122334567889999999974 46789999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMK 297 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~ 297 (582)
|||||||++||+.++.+|.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.++... .+
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~--~~------- 225 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPLAGLTM--DK------- 225 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecChhhCCH--HH-------
Confidence 9999999999999999999998765 6799999999999999999999999999974 454433210 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEecc-CCCCCCCeEEEEEEEEEe
Q 007982 298 QYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVD-VGKLPPPVLQFVEVTFGY 376 (582)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y 376 (582)
.... +....... .++. .....+++|+++|+++.|
T Consensus 226 --------------~~~~---------------------~~~~~~~~----------~~~~~~~~~~~~~i~~~~l~~~~ 260 (491)
T PRK10982 226 --------------IIAM---------------------MVGRSLTQ----------RFPDKENKPGEVILEVRNLTSLR 260 (491)
T ss_pred --------------HHHH---------------------HhCCCccc----------ccccccCCCCCcEEEEeCccccc
Confidence 0000 00000000 0000 001124689999999875
Q ss_pred cCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEechhhh-hhc
Q 007982 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQHLA-EKL 443 (582)
Q Consensus 377 ~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q~~~-~~~ 443 (582)
+.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+.+. ..++|++|... ..+
T Consensus 261 ---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 261 ---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGI 337 (491)
T ss_pred ---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCc
Confidence 35899999999999999999999999999999999999999999987652 12678877642 112
Q ss_pred CCcccHH-----HHHHhc---C---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 444 DMDMSAL-----QYMIKE---Y---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 444 ~~~~~~~-----~~~~~~---~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
....++. +++... + .. .....++++++.+++.....++++.+|||||||||+|||+++.+|+||||||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE 417 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE 417 (491)
T ss_pred ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2223322 222111 1 11 1234578899999996333456779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 512 PTNHLDIETIDSLAEALNE---WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||+|||+.++..+.+.|++ .+.|||+||||++++..+|||+++|++|+++. .++...|.
T Consensus 418 Pt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~-~~~~~~~~ 479 (491)
T PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG-IVDTKTTT 479 (491)
T ss_pred CCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence 9999999999999888855 47899999999999999999999999999974 44434443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-73 Score=572.72 Aligned_cols=448 Identities=24% Similarity=0.329 Sum_probs=349.5
Q ss_pred ceEEeeeEEEEC----CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHHH-H-HH
Q 007982 72 DIRIESLSVTFH----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERLK-L-EK 144 (582)
Q Consensus 72 ~i~v~nls~~y~----~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~~-~-~~ 144 (582)
.|+++||++.|+ ...+++++||+|++||.++|||+||||||-..+.|.++.+.... ..++.+.+++...- . +.
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 689999999996 56899999999999999999999999999999999988875322 12334555544331 0 11
Q ss_pred HHH-----Hhc--cccCCCc-c-------hHHHHHHHHHcCChhHHHHHHHHHHHhCCCCh--hhhhccCCCCChhHHHH
Q 007982 145 EAE-----ILG--AQEDGGG-E-------QLERVYERLEALDASTAEKRAAEILYGLGFNK--TMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 145 ~~~-----~~~--~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqR 207 (582)
... .+. +|.+... . ++.+.......+....++.++.++|+.+|+.+ ...+.+|++||||||||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR 165 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR 165 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH
Confidence 111 121 3333221 1 12223333346677888999999999999963 45678999999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
|+||.||+.+|++||.||||++||.....+++++|+++ +..+++||||+..+..++|||+||.+|+++. .|..++
T Consensus 166 VMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~ 244 (534)
T COG4172 166 VMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTET 244 (534)
T ss_pred HHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHH
Confidence 99999999999999999999999999999999998764 7899999999999999999999999999974 555444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCC
Q 007982 284 YVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLP 363 (582)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (582)
.+. ...|.|.+.- ++. +..+.. +......
T Consensus 245 lF~----------------------------~PqHpYTr~L---------l~a-eP~g~~-------------~p~~~~~ 273 (534)
T COG4172 245 LFA----------------------------APQHPYTRKL---------LAA-EPSGDP-------------PPLPEDA 273 (534)
T ss_pred Hhh----------------------------CCCChHHHHH---------Hhc-CCCCCC-------------CCCCCCC
Confidence 332 1112122110 000 000100 0111224
Q ss_pred CCeEEEEEEEEEecCC----------ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----
Q 007982 364 PPVLQFVEVTFGYTPD----------NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~----------~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---- 429 (582)
+++++.+++.++|+-. ..+++++||++++|+.+||||.+|||||||-..|.+++++. |.|++.+.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 6789999999998621 24789999999999999999999999999999999999776 99988653
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHhcC----CC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHH
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIKEY----PG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqk 491 (582)
.++..++|++...+++.+++.+.+.... +. ...+++.++|..+||+.....+.+++.|||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 2467789998888888898887765432 11 13467899999999988665566699999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCH
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDI 567 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 567 (582)
||++||||++.+|++++||||||+||..-...+.++|+++ +.+-++||||+..+..+||+|+||.+|+|++ .|+.
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE-~G~~ 511 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE-QGPT 511 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee-eCCH
Confidence 9999999999999999999999999999998888888765 5799999999999999999999999999987 8998
Q ss_pred HHHHHH
Q 007982 568 MDFKLH 573 (582)
Q Consensus 568 ~~~~~~ 573 (582)
++++.+
T Consensus 512 ~~if~~ 517 (534)
T COG4172 512 EAVFAN 517 (534)
T ss_pred HHHhcC
Confidence 888764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-72 Score=619.33 Aligned_cols=429 Identities=21% Similarity=0.285 Sum_probs=313.3
Q ss_pred eeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeec-------hHHHHH-HHHHH-
Q 007982 77 SLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISC-------DEERLK-LEKEA- 146 (582)
Q Consensus 77 nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~-------~~~~~~-~~~~~- 146 (582)
+++++|+++ .+|.+++ .+++|+++||+||||||||||+|+|+|+.+|+.|.+.....+ .+.... .....
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 479999874 6999999 999999999999999999999999999998887665321111 111111 00000
Q ss_pred H---Hhc--cccCCCcch--HHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 E---ILG--AQEDGGGEQ--LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~---~~~--~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
. .+. .+....... ...+.+.+.. .....++.++++.+||.. ..++++.+|||||||||+||+||+.+|+
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK---VDERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh---hhHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 011 010000000 0022222221 223457889999999974 5689999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMK 297 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~ 297 (582)
+|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++. |.|..+...... .
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~-~----- 301 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGV-R----- 301 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc-----cccceecchhHH-H-----
Confidence 99999999999999999999999877 7899999999999999999999998641 111111100000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC--CCCCCeEEEEEEEEE
Q 007982 298 QYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG--KLPPPVLQFVEVTFG 375 (582)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~ 375 (582)
..+..+...+.. . + .+. +. .....|.++... ....++|+++|+++.
T Consensus 302 ---------~~i~~~~~~~~~-------~----e----~~~---~~-----~~~~~~~~~~~~~~~~~~~~l~~~~ls~~ 349 (590)
T PRK13409 302 ---------VGINEYLKGYLP-------E----E----NMR---IR-----PEPIEFEERPPRDESERETLVEYPDLTKK 349 (590)
T ss_pred ---------HhHHHHHHhcch-------h----h----hhh---cc-----ccCcceecCCCccccCCceEEEEcceEEE
Confidence 000111111100 0 0 000 00 000111111111 123578999999999
Q ss_pred ecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHh
Q 007982 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK 455 (582)
Q Consensus 376 y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 455 (582)
|++ . .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+. ..++|++|+.. .....|+.+++..
T Consensus 350 ~~~-~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~ 423 (590)
T PRK13409 350 LGD-F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRS 423 (590)
T ss_pred ECC-E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHH
Confidence 964 3 5899999999999999999999999999999999999999999875 57999999864 3456788877653
Q ss_pred cCC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---
Q 007982 456 EYP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--- 531 (582)
Q Consensus 456 ~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--- 531 (582)
... ......+.++++.+||... .++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++
T Consensus 424 ~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 424 ITDDLGSSYYKSEIIKPLQLERL-LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred HhhhcChHHHHHHHHHHCCCHHH-HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 211 1123356889999999854 45678999999999999999999999999999999999999999999999876
Q ss_pred -CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 532 -DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 532 -~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
+.|||+||||++++..+||||++|++ ++.
T Consensus 503 ~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 503 REATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 67999999999999999999999965 654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=560.22 Aligned_cols=428 Identities=22% Similarity=0.309 Sum_probs=332.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH--HHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK--LEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~ 149 (582)
.++++|++|+|++..+|+++||+|.+||+++|+|.||||||||+|+|+|.++|+.|.+ .+++.... -.......
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I----~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI----LIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE----EECCEEccCCCHHHHHhC
Confidence 6899999999999999999999999999999999999999999999999999987643 23322211 11111111
Q ss_pred c----cccC---CCcchHHHHHHH------HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 150 G----AQED---GGGEQLERVYER------LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 150 ~----~~~~---~~~~~~~~~~~~------l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
+ +|.. +...+.++++-. +..++....+.++.++|..+|+... .+.++.+||+||||.|+|||||..
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhc
Confidence 1 2222 223344444321 1124667888999999999999644 678999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCC-hhHHHHhHHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN-FDQYVQTRSELE 292 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~-~~~~~~~~~~~~ 292 (582)
+++||||||||++|+....+.|+++++++ |.++|+|||.++++.++||||.||++|+++.. .+ ..++.
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~-~~~~~~~~------- 234 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT-RPTAAETS------- 234 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee-cccccCCC-------
Confidence 99999999999999999999999988765 67999999999999999999999999998632 22 11110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEE
Q 007982 293 ENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEV 372 (582)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 372 (582)
.......|.+..+...+.. +......+|+++++++
T Consensus 235 -------------------------------------~~~lv~~MvGr~~~~~~~~--------~~~~~~~~~~l~v~~l 269 (500)
T COG1129 235 -------------------------------------EDELVRLMVGRELEDLFPE--------PPEEGIGEPVLEVRNL 269 (500)
T ss_pred -------------------------------------HHHHHHHhhCcchhhhccc--------ccccCCCCcEEEEecC
Confidence 0112223333222111110 0011234688999999
Q ss_pred EEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce------------eEEEechhhh
Q 007982 373 TFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------------RIAQFHQHLA 440 (582)
Q Consensus 373 ~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~------------~~~~~~q~~~ 440 (582)
+.. ..++|+||++++||++||.|-=|||+|.|+++|.|..++.+|+|..++.. .++|++.+..
T Consensus 270 ~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk 344 (500)
T COG1129 270 SGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344 (500)
T ss_pred CCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccc
Confidence 853 15789999999999999999999999999999999999999999987641 3677766532
Q ss_pred -hhcCCcccHHHHHHh----c------CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 441 -EKLDMDMSALQYMIK----E------YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 441 -~~~~~~~~~~~~~~~----~------~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
+.+.+..++.+|+.. . .. ..+.+.++++.+.+++.......++.+||||+||||+|||+|+.+|++||
T Consensus 345 ~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLi 424 (500)
T COG1129 345 SEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLI 424 (500)
T ss_pred cCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEE
Confidence 344455555555421 1 11 11345678889999998776678999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|||||.|+|..++.+++++|+++ |.+||+||.|++++..+||||+||.+|+++.
T Consensus 425 lDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 425 LDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred ECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999876 6799999999999999999999999999974
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=588.58 Aligned_cols=201 Identities=28% Similarity=0.373 Sum_probs=173.7
Q ss_pred EEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 367 LQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 367 l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
|+++||+|+||. +.++|+|+||+|++|+.+|||||+||||||++.+|-.+|.|++|.|..++. .+++
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 899999999984 346999999999999999999999999999999999999999999998763 2478
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
.+.|.+. -+..|+.+++..+......+++.++++..+..++....| ..+||||||||++||||++++
T Consensus 1068 lVsQEP~---LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1068 LVSQEPV---LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred eeccCch---hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 8888764 367799999887643346677888877665544332222 469999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||.||+||.++.+.+.++|.+. ++|.|+|.|.+..+ +-||.|+|+++|+|++ .|+-+++..
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI-QNADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh-hcCCEEEEEECCEEEe-cccHHHHHh
Confidence 9999999999999999999999999986 67999999999999 6799999999999987 899998876
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-64 Score=519.10 Aligned_cols=432 Identities=22% Similarity=0.317 Sum_probs=338.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHH--HHHHH--
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKL--EKEAE-- 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~-- 147 (582)
.|++++++|.|++..++++|||+|.+||+.+|+|+||||||||+++|.|++.|+.|.+ .+++....+ .....
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI----~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI----RVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE----EECCEEeccCCHHHHHHc
Confidence 5899999999999999999999999999999999999999999999999999996643 333332211 11111
Q ss_pred Hhc--cccC---CCcchHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 148 ILG--AQED---GGGEQLERVYERLE-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 148 ~~~--~~~~---~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
-++ +|.. +..++.+++.-..+ .++....++++.++.+++||+-+ .+.++.+||-||||||.|.+||.++
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-p~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-ccceeecCCcchhHHHHHHHHHhcC
Confidence 122 2221 23344555543322 23566788999999999999754 5789999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEEN 294 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~ 294 (582)
|++|||||||+-|-|...+.|++.|+++ |+|||+|||.++++.++|||+.||+.|+++ |.++....+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv---gt~~~~~~~------- 228 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV---GTVDPVAET------- 228 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE---eeecCCCCC-------
Confidence 9999999999999999999999998765 789999999999999999999999999975 333311000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEE
Q 007982 295 QMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTF 374 (582)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 374 (582)
+......-|.+........ . .+....+++|++++++.
T Consensus 229 ----------------------------------t~~ela~lMvG~~v~~~~~--------~-~~~~pg~~vL~V~~L~v 265 (501)
T COG3845 229 ----------------------------------TEEELAELMVGREVVLRVV--------K-PPSTPGEVVLEVEDLSV 265 (501)
T ss_pred ----------------------------------CHHHHHHHhcCCccccccc--------c-CCCCCCCeEEEEeeeEe
Confidence 0001112233322221111 0 11223478999999998
Q ss_pred EecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-------------eEEEechhh-h
Q 007982 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-------------RIAQFHQHL-A 440 (582)
Q Consensus 375 ~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-------------~~~~~~q~~-~ 440 (582)
.-..+...++++||+|++||++||.|-.|.|.+.|+.+|+|+.+|.+|+|...+.. .++|+|.+. .
T Consensus 266 ~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~ 345 (501)
T COG3845 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHG 345 (501)
T ss_pred ecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhcc
Confidence 75433468999999999999999999999999999999999999999999887642 356776654 3
Q ss_pred hhcCCcccHHHHHHhc-CC-----C---C----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 441 EKLDMDMSALQYMIKE-YP-----G---N----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 441 ~~~~~~~~~~~~~~~~-~~-----~---~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
..+.++.++.+++... +. . . ....++++++.|++.......|..+||||++||+.+||-|..+|++|
T Consensus 346 ~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lL 425 (501)
T COG3845 346 HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLL 425 (501)
T ss_pred CccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEE
Confidence 4556677777775421 11 0 1 13457888999999765566788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
|+.+||.|||..+.+.+.+.|.+. |.+|++||-|++++..+||||.||.+|+++
T Consensus 426 I~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred EEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 999999999999999999988654 678999999999999999999999999996
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=582.34 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=173.7
Q ss_pred eEEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC------------------------
Q 007982 366 VLQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------------------------ 419 (582)
Q Consensus 366 ~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p------------------------ 419 (582)
-|+++||+|+|++ +.++|+|+||+|++|+++|||||||||||||+++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4999999999973 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CCcEEEEcCc-----------eeEEEechhhhhhcCCcccHHHHHHhcCC
Q 007982 420 ------------------------------LDGMVRRHNH-----------LRIAQFHQHLAEKLDMDMSALQYMIKEYP 458 (582)
Q Consensus 420 ------------------------------~~G~i~~~~~-----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 458 (582)
++|+|..++. ..++|++|.+. -+..|+.+++....+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~---LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM---LFNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc---cccccHHHHHhcCCC
Confidence 5999988763 25899999863 357899999876655
Q ss_pred CChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007982 459 GNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528 (582)
Q Consensus 459 ~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 528 (582)
....+++.++++..++.++....| ...||||||||++|||||+++|+||||||||++||.++...+.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 556677888888887755433222 3579999999999999999999999999999999999999999999
Q ss_pred Hhc----CceEEEEecCHHHHHhhcCEEEEEeC----CeEEEEcCCHHHHHH
Q 007982 529 NEW----DGGLVLVSHDFRLINQVAHEIWVCEN----QAVTRWEGDIMDFKL 572 (582)
Q Consensus 529 ~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~----G~i~~~~g~~~~~~~ 572 (582)
.+. +.|+|+|||++..+. .||+|+||++ |+++.-.|+.+++.+
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 876 579999999999984 6999999999 896545899888764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=562.31 Aligned_cols=207 Identities=24% Similarity=0.276 Sum_probs=176.1
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~ 433 (582)
.+|+++|+++.|++ .+.+++|+||+|.+||++||+||||||||||+|+|+|+++|++|+|...+. ..+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 36899999999974 257999999999999999999999999999999999999999999987652 2489
Q ss_pred EechhhhhhcCCcccHHHHHHh-----cCCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIK-----EYPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|... +....|+.+++.. ..+.. ..+.+.++++.+||.... ++++++|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~~--L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFDA--IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-DRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEecccc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999753 4445677776532 11211 234567889999997654 4667999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
||||||+|||+.+++.+.+.|.+. +.|||++||++++++.+||||++|++|++. ..|++++++....
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKFG 2162 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHhC
Confidence 999999999999999999998764 579999999999999999999999999997 4899998876654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-60 Score=572.81 Aligned_cols=201 Identities=20% Similarity=0.271 Sum_probs=171.2
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
.|+++||+|+|+++ +++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++. .+++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 49999999999644 57999999999999999999999999999999999999999999988763 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
+++|++. -++-|+.+++... ...+.+++.++++..++.+.....| ...||||||||++|||||+++
T Consensus 1314 iVpQdp~---LF~gTIr~NL~~~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1314 IIPQSPV---LFSGTVRFNIDPF-SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred EECCCCe---eeCccHHHHcCCC-CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999863 2456888887432 2335667888888887754332222 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||.++...+.+.|++. ++|||+|+|+++.+.. ||+|+||++|+|++ .|+++++.+
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl~ 1458 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELLS 1458 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 5799999999999965 99999999999987 788888764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=571.08 Aligned_cols=201 Identities=19% Similarity=0.262 Sum_probs=171.4
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|+++ +++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++. .+++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999654 47999999999999999999999999999999999999999999998763 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
+++|++. -+.-|+.+++... ...+++++.++++..++.+.....| ...||||||||++|||||+++
T Consensus 1317 iVpQdp~---LF~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1317 IIPQAPV---LFSGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred EECCCCc---cccccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999863 2456888887432 2335667888888877754332222 358999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||.++...|.+.|++. ++|||+|+|+++.+.. ||+|+||++|+|++ .|+++++.+
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl~ 1461 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLLS 1461 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999999999875 5799999999999965 99999999999986 688888764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=567.67 Aligned_cols=201 Identities=21% Similarity=0.264 Sum_probs=170.7
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|+++ .++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++. .+++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999754 47999999999999999999999999999999999999999999998763 3588
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~~ 503 (582)
+++|++. -+.-|+.+++.. +...+.+++.++++..++.+..... ....||||||||++|||||+++
T Consensus 1364 iVpQdp~---LF~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1364 IIPQDPV---LFSGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred EECCCCc---ccCccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 9999863 245688888742 2234566788888888775432211 2357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||.++...+.+.|++. ++|||+|+|+++.+. .||+|+||++|+|++ .|+++++.+
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 579999999999996 589999999999987 789988865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=550.56 Aligned_cols=201 Identities=21% Similarity=0.288 Sum_probs=171.9
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|+++ +++|+||||+|++||++||||++|||||||+++|.|+++|++|+|..++. ..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 49999999999754 45999999999999999999999999999999999999999999988763 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
+++|++. -++-|+.+++.. +...+.+++.++++..|+.+.....| ...||||||||++|||||+++
T Consensus 1388 iVpQdp~---LF~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1388 MIPQDPV---LFDGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred EECCCCc---cccccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999863 245688888743 22345678999999988865432221 257999999999999999995
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 -PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 -p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||+++...+.+.|++. +.|||+|+|+++.+. .||+|+||++|+|++ .|+++++.+
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 8999999999999999999999999875 579999999999985 599999999999986 789888864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=534.83 Aligned_cols=200 Identities=23% Similarity=0.328 Sum_probs=169.7
Q ss_pred eEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|++ .+++|+|+||+|++|+++||+|+||||||||+++|.|+++ .+|+|..++. .+++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5999999999974 3679999999999999999999999999999999999996 7999987762 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
+++|++. -+.-|+.+++.. +.....+++.++|+.+++.+.....| ...||||||||++|||||+++
T Consensus 1296 ~IpQdp~---LF~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1296 VIPQKVF---IFSGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred EEeCCCc---cCccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999863 345688888732 22335678899999988854433222 237999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||.++...|.+.|++. ++|||+|||+++.+. .||+|++|++|+|++ .|++.++.+
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~~DrIlvL~~G~ivE-~g~p~~Ll~ 1440 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL-ECQQFLVIEGSSVKQ-YDSIQKLLN 1440 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHHc
Confidence 9999999999999999999999999875 579999999999986 499999999999987 678887764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=530.83 Aligned_cols=198 Identities=20% Similarity=0.265 Sum_probs=163.9
Q ss_pred eEEEEEEEEEec---CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEcCc-------eeE
Q 007982 366 VLQFVEVTFGYT---PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV---PLDGMVRRHNH-------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~---p~~G~i~~~~~-------~~~ 432 (582)
+++++||++.|+ +.+.+|+|||+.|++|+++||+|||||||||||++|+|+.+ |++|+|..++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 579999999985 23579999999999999999999999999999999999997 78899988763 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc----CCC--C---hHHHHHHHHHhcCCCCccccCCCC----CCChhHHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE----YPG--N---EEEKMRAAIGRFGLTGKAQVMPMK----NLSDGQRSRVVFAWL 499 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~----~~~--~---~~~~~~~~l~~~gl~~~~~~~~~~----~LSgGqkqrv~lAra 499 (582)
+|++|+.. +....|+.+++... .+. . ..++++++++.+|+.+..+ ..++ .|||||||||+||++
T Consensus 839 ~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d-~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD-AVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC-CeeCCCCCCCCHHHhhHHHHHHH
Confidence 89998742 34567888776521 111 1 1345789999999976543 4444 799999999999999
Q ss_pred HccCCC-EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHH-HHhhcCEEEEEeCC-eEEEEcCCH
Q 007982 500 AYRQPH-MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRL-INQVAHEIWVCENQ-AVTRWEGDI 567 (582)
Q Consensus 500 l~~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~ 567 (582)
|+.+|+ ||+|||||+|||+.+...+.+.|+++ +.|||++||+++. +.+.||++++|++| +++ +.|+.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 999997 99999999999999999999998875 5799999999986 45789999999987 886 67776
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=517.53 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=161.9
Q ss_pred eEEEEEEEEEec------------CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCc--
Q 007982 366 VLQFVEVTFGYT------------PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNH-- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~------------~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~-- 429 (582)
.+.++||++..+ +.+.+|+|+|+.|++|+++||+|||||||||||++|+|...+ .+|+|..++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 488999998863 123699999999999999999999999999999999999763 7899987652
Q ss_pred ------eeEEEechhhhhhcCCcccHHHHHHhc----CCC-C----hHHHHHHHHHhcCCCCccccCCC-----CCCChh
Q 007982 430 ------LRIAQFHQHLAEKLDMDMSALQYMIKE----YPG-N----EEEKMRAAIGRFGLTGKAQVMPM-----KNLSDG 489 (582)
Q Consensus 430 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~-~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgG 489 (582)
..++|++|... +....|+.+++... .+. . ..+.+.++++.+||.+... ..+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~-~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC-CccCCCCCCCcCHH
Confidence 23789998743 44567888776421 121 1 1235788999999976543 333 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHH-HHHhhcCEEEEEeC-CeEEEEc
Q 007982 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFR-LINQVAHEIWVCEN-QAVTRWE 564 (582)
Q Consensus 490 qkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~ 564 (582)
|||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++ +.|||+++|+++ .+.++||++++|++ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999999998875 679999999998 47789999999996 8886 67
Q ss_pred CCH
Q 007982 565 GDI 567 (582)
Q Consensus 565 g~~ 567 (582)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=412.91 Aligned_cols=426 Identities=21% Similarity=0.305 Sum_probs=286.2
Q ss_pred eeEEEECCeeeeEeeeEE-EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHH--HHHHH---hc
Q 007982 77 SLSVTFHGHDLIVDSELE-LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLE--KEAEI---LG 150 (582)
Q Consensus 77 nls~~y~~~~il~~vsl~-i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~---~~ 150 (582)
++..+|+.. -|+=-.+- ..+|.++||+|+||-||||-+|+|+|...|..+.....-.|+..-..++ ....+ +.
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 346677521 12222232 3479999999999999999999999988887665544333333211111 01111 10
Q ss_pred cccC--CCcchHHHHHH-HHHc-----CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 151 AQED--GGGEQLERVYE-RLEA-----LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 151 ~~~~--~~~~~~~~~~~-~l~~-----~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
.... ..-.++-+... .+.+ +.......+..++.+.++|.. ..++.+++|||||-||+|||.|++++.++.+
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~n-vl~r~v~~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN-VLDRDVSELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchh-hhhhhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence 0000 00111111111 1100 011111235788899999974 6799999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQY 299 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (582)
+|||||.||...+-.....++++ +++||+|.||+..++-++|-|-++-.-.= .| |-.+.-...+
T Consensus 237 FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg-~Y-Gvvs~p~svr----------- 303 (591)
T COG1245 237 FDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPG-VY-GVVSKPKSVR----------- 303 (591)
T ss_pred EcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCc-cc-eEeccchHHH-----------
Confidence 99999999999998888877766 57999999999999999998887753110 11 1100000000
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCccc--ccCceeEEEeccCCC-CC-CCeEEEEEEEEE
Q 007982 300 KWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKV--VKDKVLVFRFVDVGK-LP-PPVLQFVEVTFG 375 (582)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-~~~l~~~~l~~~ 375 (582)
..+..|+.-+- .+.. .+...+.|...++.. .. ..+++..++++.
T Consensus 304 -------~gIN~yL~Gyl-------------------------~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~k~ 351 (591)
T COG1245 304 -------VGINEYLKGYL-------------------------PEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKT 351 (591)
T ss_pred -------HHHHHHHhccC-------------------------chhcccccccceeeeccCcccccccceeeecchheee
Confidence 11122221111 0000 011123333322221 11 445666677777
Q ss_pred ecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHh
Q 007982 376 YTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK 455 (582)
Q Consensus 376 y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 455 (582)
|++ . .|+-=.=+|..||+++++||||-||||++++|+|.++|++|. ....+++|-+|.+.. .++.|+.+++..
T Consensus 352 ~g~-F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~--~~~gtV~~~l~~ 424 (591)
T COG1245 352 YGD-F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISP--DYDGTVEDLLRS 424 (591)
T ss_pred cCc-e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecC--CCCCcHHHHHHH
Confidence 642 1 122222246677899999999999999999999999999998 445678999998753 466788877765
Q ss_pred cCCC--ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--
Q 007982 456 EYPG--NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-- 531 (582)
Q Consensus 456 ~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 531 (582)
..+. .+.-...++++-+.|.... .+++..|||||.|||+||.+|.++++|.|||||+++||.+.+-.+.+.|+++
T Consensus 425 ~~~~~~~~s~~~~ei~~pl~l~~i~-e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e 503 (591)
T COG1245 425 AIRSAFGSSYFKTEIVKPLNLEDLL-ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE 503 (591)
T ss_pred hhhhhcccchhHHhhcCccchHHHH-hcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHh
Confidence 4322 1222345778889997654 5788999999999999999999999999999999999999998888888775
Q ss_pred --CceEEEEecCHHHHHhhcCEEEEEeC
Q 007982 532 --DGGLVLVSHDFRLINQVAHEIWVCEN 557 (582)
Q Consensus 532 --~~tvi~vsHd~~~~~~~~d~i~~l~~ 557 (582)
+.|.++|-||+-++.-++||++|+++
T Consensus 504 ~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 504 NNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred hcCceEEEEecceehhhhhhceEEEEec
Confidence 57999999999999999999999863
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=460.01 Aligned_cols=201 Identities=21% Similarity=0.363 Sum_probs=166.1
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++|++.+|.++ +.+|+||||+|++||.+||||..|||||||+.+|.++..|.+|+|..++. .+++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 59999999999765 67999999999999999999999999999999999999999999998763 3577
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
.+||++. -++-|+..++ +.+....++++.++|+..+|.+.....| ..++|-||||.|+|||||+++
T Consensus 1218 IIPQdPv---LFsGTvR~NL-DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1218 IIPQDPV---LFSGTVRFNL-DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred eeCCCCc---eecCcccccc-CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 8888863 1333443332 1122334667888888877754333222 368999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+||+|||+|+++|+++-..|.+.|++. ++|||.|.|.++.+.. ||||+||++|+|++| |+|.+++.
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef-dsP~~Ll~ 1362 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF-DSPAELLS 1362 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec-CChHHHHh
Confidence 9999999999999999999999999874 6899999999999965 999999999999985 56666653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=380.28 Aligned_cols=204 Identities=24% Similarity=0.432 Sum_probs=181.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
++|+++|++++|+ +..+|+||||+|.+||+++|+||||||||||||+|.||..|++|+|..++. .++
T Consensus 1 ~mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4799999999996 468999999999999999999999999999999999999999999998772 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc------CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE------YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
|+++|++. +.+.+|+++++... .++ ..++.+.++|+++||.+..+.+| .+|||||||||+|||||+++|+
T Consensus 80 GmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCcHHHHHHHHHHHHcCCCC
Confidence 89999974 77889999998643 121 13456889999999998777666 7999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
++|+|||||+|||+...++.+.++++ |.|+|+|||++.|+.++||||++|++|+|++ +|+++++..+
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie-~g~p~~~f~~ 226 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE-EGPPEEFFDN 226 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE-ecCHHHHhcC
Confidence 99999999999999999999888775 6799999999999999999999999999976 7799888764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=368.70 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=173.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH----HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER----LKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~ 147 (582)
+|+++||+|+||+..+|++||++|++||+++|+||||||||||||||+++..++.|.+. +++.. ..+.....
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~----i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT----VDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE----ECCEeccchhhHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999876542 22211 02233333
Q ss_pred Hhcc--ccC---CCcchHHHHHHHH---HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 148 ILGA--QED---GGGEQLERVYERL---EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 148 ~~~~--~~~---~~~~~~~~~~~~l---~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.++. |.. +..+.++++.... ...+..++++++.++|+++||.+ ..+.+|.+|||||||||||||||+.+|+
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 3332 221 2234455554322 35678889999999999999986 4689999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHh
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQT 287 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 287 (582)
++|+|||||+|||+...++++.++++ +.|.|+|||++.|+.++||||++|++|+++. .|++++++.+
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie-~g~p~~~f~~ 226 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE-EGPPEEFFDN 226 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE-ecCHHHHhcC
Confidence 99999999999999999999988765 7899999999999999999999999998875 4688887753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=375.95 Aligned_cols=206 Identities=26% Similarity=0.430 Sum_probs=180.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEEEe
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIAQF 435 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~~~ 435 (582)
.++|+++|+++.|.+. ++|+||||+|.+|++++|+||||||||||+|+|+|+++|.+|+|...+. .++||+
T Consensus 2 ~~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred CcEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 3679999999999754 7999999999999999999999999999999999999999999986543 479999
Q ss_pred chhhhhhcCCcccHHHHHHhc-C---------CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKE-Y---------PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
||.......+..|+.+.+... + ...+.+.+.++|+++|+.+.. ++++++|||||+|||.|||||+++|+
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-DRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-CCcccccCcHHHHHHHHHHHhccCCC
Confidence 998765667788999987643 1 112457899999999999765 57899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||||||||+|+|+.+...+.++|+++ ++|||+||||+..+.++||+|+.|+ ++++ ..|+++++...
T Consensus 160 lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~-~~G~~~~~~~~ 228 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLI-ASGPPEEVLTE 228 (254)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeE-eccChhhccCH
Confidence 99999999999999999999998775 6799999999999999999999995 5554 48898888664
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=370.67 Aligned_cols=202 Identities=30% Similarity=0.484 Sum_probs=176.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
++|+++|++|+|+ ++++++|+||+|.+|++++|+||||||||||||+|+|+++|.+|+|...+. ..++
T Consensus 1 ~~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 1 MMLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred CeeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 3689999999997 578999999999999999999999999999999999999999999998763 3689
Q ss_pred EechhhhhhcCCcccHHHHHHhc-CC---------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE-YP---------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|... .....++.+.+... +| ..+.+.+.++|+.+|+.+... +++.+|||||||||.|||||+++
T Consensus 80 ~vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 80 YVPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-RPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred EeccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-CcccccChhHHHHHHHHHHHhcC
Confidence 9999863 44566777765432 11 123456889999999987664 67999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|++|||||||++||+....++++.++++ +.|||+|+||++++.++||++++|++|+++ ..|++.+..
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~-a~G~p~evl 227 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV-AQGTPEEVL 227 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-eecCcchhc
Confidence 9999999999999999999999998876 479999999999999999999999999997 588887664
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=355.45 Aligned_cols=207 Identities=22% Similarity=0.346 Sum_probs=179.5
Q ss_pred CeEEEEEEEEEecCCc---eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 365 PVLQFVEVTFGYTPDN---LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
++|+++|+++.|+... +++++|||+|.+||++||+|+||||||||+++|+|+.+|++|+|.+++.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999997643 4999999999999999999999999999999999999999999998772
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhcCC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKEYP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
..+.+++|++...+++..++.+.+..... ....+++.++|+.+||.....++.+.+|||||+|||+|||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 34778999998888888888777654322 12345699999999998765555568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||++||+.....+.+++.+ ++-|+|+||||+..+..+||||+||++|++++ .++..+++.
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE-~~~~~~l~~ 231 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE-IGPTEELLS 231 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE-eechhhhhc
Confidence 9999999999999999998888765 46799999999999999999999999999986 556555543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=414.46 Aligned_cols=336 Identities=21% Similarity=0.240 Sum_probs=234.0
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
+..++. +|+.+||.....++++.+|||||+|||+||+||+.+| ++|||||||++||+..+..|.++|+++ +.||
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV 544 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL 544 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 344553 7889999643268999999999999999999999997 999999999999999999999998765 6799
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKL 323 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (582)
|+||||++++. .||+|++| ++|+++ +.|+++++........ ..+-.
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~~~~~~l~---------------------~~~l~----- 596 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIMKNPNSLT---------------------GQYLS----- 596 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHhcChhhee---------------------ehhhc-----
Confidence 99999999986 69999999 889986 5677766532110000 00000
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCC
Q 007982 324 ARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNG 403 (582)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NG 403 (582)
...... . +.. . .....+.|++++++. ..|+|+||+|+.|++++|+|+||
T Consensus 597 ---------------~~~~~~-~-~~~------~--~~~~~~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsG 645 (943)
T PRK00349 597 ---------------GKKKIE-V-PKE------R--RKGNGKFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSG 645 (943)
T ss_pred ---------------cccccc-c-ccc------c--cCCCcceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCC
Confidence 000000 0 000 0 001235788988862 24899999999999999999999
Q ss_pred CcHHHHHHHHh---------CCCCC----------------------------CCcEEEEcCc--------------eeE
Q 007982 404 AGKSTLLKLMT---------GDLVP----------------------------LDGMVRRHNH--------------LRI 432 (582)
Q Consensus 404 sGKSTLl~ll~---------Gl~~p----------------------------~~G~i~~~~~--------------~~~ 432 (582)
||||||++-+. +...+ .++-.++.+. ...
T Consensus 646 SGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~ 725 (943)
T PRK00349 646 SGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKAR 725 (943)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCcccccc
Confidence 99999998763 11111 1110000000 000
Q ss_pred EEechhhhhhc----------------------------------------------------CCcccHHHHHHhcCCCC
Q 007982 433 AQFHQHLAEKL----------------------------------------------------DMDMSALQYMIKEYPGN 460 (582)
Q Consensus 433 ~~~~q~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~ 460 (582)
+|.+++++.+. ...+++.+.+.......
T Consensus 726 g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~ 805 (943)
T PRK00349 726 GYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIP 805 (943)
T ss_pred CCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhch
Confidence 11111111000 00122222221110001
Q ss_pred hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---Cce
Q 007982 461 EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP---HMLLLDEPTNHLDIETIDSLAEALNEW---DGG 534 (582)
Q Consensus 461 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t 534 (582)
......+.|..+||......+++.+|||||+|||.||++|+.+| +++||||||+|||+..+..+.+.|+++ +.|
T Consensus 806 ~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~T 885 (943)
T PRK00349 806 KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNT 885 (943)
T ss_pred hhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 12334677889999764345677899999999999999999999 999999999999999999999988775 579
Q ss_pred EEEEecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 535 LVLVSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 535 vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
||+||||++++. .||+|++| ++|+|+ +.|+++++..
T Consensus 886 VIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~ 927 (943)
T PRK00349 886 VVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK 927 (943)
T ss_pred EEEEecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence 999999999985 79999999 689996 5899888764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=351.01 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=181.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------e
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------L 430 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~ 430 (582)
++|+++||++.|++++.+|+||||+|++||+++|+||||||||||||+|.|+..|++|+|...+. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 57999999999987889999999999999999999999999999999999999999999987652 3
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc--------------CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE--------------YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 496 (582)
.+|+++|.+. +....++++++... +++.+...+.++|+++|+.+... .+.++|||||||||+|
T Consensus 82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-QRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-HHhccCCcchhHHHHH
Confidence 5899999874 55667777776421 23445667889999999987665 4568999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+++|+|+|.|||++.|||.+...+++.|++. +.|||+..|+++++.++||||+-|++|+|+ |+|++.++-+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence 99999999999999999999999999999998764 689999999999999999999999999996 8999988765
Q ss_pred HH
Q 007982 573 HL 574 (582)
Q Consensus 573 ~~ 574 (582)
..
T Consensus 238 ~~ 239 (258)
T COG3638 238 EA 239 (258)
T ss_pred HH
Confidence 43
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=354.87 Aligned_cols=190 Identities=29% Similarity=0.393 Sum_probs=167.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEechh
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQH 438 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q~ 438 (582)
.++.++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|...+. ..++|++|+
T Consensus 2 ~~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 46899999999975 78999999999999999999999999999999999999999999988663 368999999
Q ss_pred hhhhcCCcccHHHHHHhcC-----CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 439 LAEKLDMDMSALQYMIKEY-----PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
.. +.+..|+.+|+.... +. ...+++.++|+.+||.++....| .+|||||||||+|||||+.+|+|||||||
T Consensus 81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-cccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 65 678889999875332 11 13457899999999999877665 89999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCC
Q 007982 513 TNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G 558 (582)
+++||..++..+.+.+.+ .+.|||+||||++++..++|||++|.++
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999888776654 4789999999999999999999999984
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=363.82 Aligned_cols=205 Identities=24% Similarity=0.382 Sum_probs=178.9
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
||++++|++.|... ..+++||||+|++||++||+|.||||||||+|+|.++.+|++|+|..++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 58999999999752 46999999999999999999999999999999999999999999988762
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
.++|+++|+|. +.-..|+++++... .++. ..+++.++|+.+||++.....| .+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-hhcCcchhhHHHHHHHHh
Confidence 36999999985 44457888877532 2222 3567899999999997776665 799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
.+|+|||+|||||+|||++...+.++|++ ++.|||+|||.|+.+.++||||.||++|++++ .|+..+.+.+-
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE-~G~v~~vF~~P 233 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE-EGTVSEVFANP 233 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE-eccHHHhhcCc
Confidence 99999999999999999999999998875 47799999999999999999999999999986 88888886643
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=348.48 Aligned_cols=205 Identities=27% Similarity=0.370 Sum_probs=176.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
.++|++++|+++|+ ++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|...+.
T Consensus 6 ~~~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 67899999999996 578999999999999999999999999999999999999999999988763
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhc---CCCCh----HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKE---YPGNE----EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
.++|+++|+-+ +.-++|+++|+... +.+.. ++.+..-|+.+||.+...+.-+++||||+++||+||||++.
T Consensus 85 ~r~GvlFQ~gA--LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQGA--LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeeccc--cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 25889999854 55678888887532 22222 23455668999999873334458999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+||++||||+||||-+...+.++|+++ +.|+|+||||++.+..+||||+++.+|+|. |.|+++++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 99999999999999999988888877654 679999999999999999999999999995 8999999876
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=347.78 Aligned_cols=210 Identities=26% Similarity=0.359 Sum_probs=172.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------LKLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------~~~~~~ 145 (582)
||+++||||+|+++.+++|+||+|++||+++|||||||||||+||+|+++..|+.|.+ .++++. ..++..
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I----~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI----LIDGEDISDLDPVELRRK 76 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE----EECCeecccCCHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999998886643 222221 223333
Q ss_pred HHHhcccc--CCCcchHHHH--HHHHHcCChhHHHHHHHHHHHhCCCCh-hhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 146 AEILGAQE--DGGGEQLERV--YERLEALDASTAEKRAAEILYGLGFNK-TMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 146 ~~~~~~~~--~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
..++.++. .+..++.+++ ...+..++...+++++.++|+.+||+. .+.+|+|++|||||+|||.+||||+.+|+|
T Consensus 77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 32222211 1222333333 345667788899999999999999975 588999999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||+|||+++|||.++..+.+.+.+ +++||||||||++++..++|||.+|++|+++.| +++++++.
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~il~ 225 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEILA 225 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHHHh
Confidence 999999999999999998887754 588999999999999999999999999999876 56766654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=407.24 Aligned_cols=328 Identities=20% Similarity=0.278 Sum_probs=224.7
Q ss_pred HHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCH
Q 007982 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQ 256 (582)
Q Consensus 182 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~ 256 (582)
.|..+||.....++++.+|||||+|||+||++|+.+| .+|||||||+|||+..+..|.++|+++ +.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677888642258899999999999999999999986 899999999999999999999998765 67999999999
Q ss_pred HHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 007982 257 DFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSK 330 (582)
Q Consensus 257 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (582)
+++. .||+|++| ++|+|+ +.|+++++........ ..+-.
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~~~~~~lt---------------------~~~l~------------ 594 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEILANPDSLT---------------------GQYLS------------ 594 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEe-eccCHHHHhcCchhee---------------------eeccc------------
Confidence 9986 89999999 899986 4676655421100000 00000
Q ss_pred HHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHH
Q 007982 331 EKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLL 410 (582)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl 410 (582)
....... +.. ......+.|+++|++. ..|+|+||+|+.|++++|+|+||||||||+
T Consensus 595 ---------~~~~~~~-~~~--------~~~~~~~~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl 650 (924)
T TIGR00630 595 ---------GKKKIEV-PKE--------RRPGNGKFLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLI 650 (924)
T ss_pred ---------ccccccc-ccc--------ccCCCcceEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHH
Confidence 0000000 000 0001234789999873 258999999999999999999999999999
Q ss_pred HHHh---------C-CCCCC-----Cc------EEEEcC-------ce---------------------------eEEEe
Q 007982 411 KLMT---------G-DLVPL-----DG------MVRRHN-------HL---------------------------RIAQF 435 (582)
Q Consensus 411 ~ll~---------G-l~~p~-----~G------~i~~~~-------~~---------------------------~~~~~ 435 (582)
+-.. + ...|. .| .|.... +. ..+++
T Consensus 651 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~F 730 (924)
T TIGR00630 651 NDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRF 730 (924)
T ss_pred HHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhc
Confidence 8222 1 11110 11 010000 00 00000
Q ss_pred chhhh---------------------h----------------hc-----------CCcccHHHHHHhcCCCChHHHHHH
Q 007982 436 HQHLA---------------------E----------------KL-----------DMDMSALQYMIKEYPGNEEEKMRA 467 (582)
Q Consensus 436 ~q~~~---------------------~----------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 467 (582)
.-+.. + .+ ...+++.+.+..........+..+
T Consensus 731 SfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~ 810 (924)
T TIGR00630 731 SFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQ 810 (924)
T ss_pred CCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHH
Confidence 00000 0 00 001111111110000001123457
Q ss_pred HHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecC
Q 007982 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR---QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHD 541 (582)
Q Consensus 468 ~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd 541 (582)
+|..+||......+++.+|||||+|||.||++|+. +|+++||||||+|||+..+..+.+.|+++ +.|||+||||
T Consensus 811 ~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 811 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 78899997543456789999999999999999997 59999999999999999999999998775 5799999999
Q ss_pred HHHHHhhcCEEEEE------eCCeEEEEcCCHHHH
Q 007982 542 FRLINQVAHEIWVC------ENQAVTRWEGDIMDF 570 (582)
Q Consensus 542 ~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~ 570 (582)
++++. .||+|++| ++|+++ +.|+++++
T Consensus 891 ~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~l 923 (924)
T TIGR00630 891 LDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEEV 923 (924)
T ss_pred HHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHHh
Confidence 99985 79999999 799997 58887764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=350.41 Aligned_cols=203 Identities=23% Similarity=0.334 Sum_probs=176.5
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
||+++||++.|. ++.+++|+||+|..||+++++|||||||||+||+|.+++.|++|+|..++. .++||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 589999999997 578999999999999999999999999999999999999999999998763 46999
Q ss_pred echhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCC--ccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTG--KAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~--~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+-|... +.+.+|+.+++..- +.+. ..+++.++|..+||+. +..+ .+++|||||||||.+||||+.+|++
T Consensus 80 viQqig--LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-yP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 80 VIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-YPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhcc--cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-CchhcCcchhhHHHHHHHHhcCCCe
Confidence 999864 77888999987532 2221 3467899999999975 3444 4589999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||+|||+++|||-++..+.+.+.+ ++.|||+||||++++.+++|||++|++|+++. .+++++++.+
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q-~~~P~~il~~ 226 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ-YDTPDEILAN 226 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE-eCCHHHHHhC
Confidence 999999999999999988877754 57899999999999999999999999999986 5677776554
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=420.64 Aligned_cols=328 Identities=20% Similarity=0.271 Sum_probs=229.4
Q ss_pred HHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCH
Q 007982 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQ 256 (582)
Q Consensus 182 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~ 256 (582)
.|..+||.....++.+.+|||||+|||+||+||+.+| ++|||||||+|||+..+..|.++|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3557788643257899999999999999999999999 899999999999999999999988765 67999999999
Q ss_pred HHHHhhcCeEEEEe------CCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 007982 257 DFLNGVCTNIIHMQ------NKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSK 330 (582)
Q Consensus 257 ~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (582)
++ ..+||+|++|. +|+++ +.|+++++........ ..
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv-~~G~~~eil~~~~~l~---------------------~~--------------- 580 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVL-FNGSPREFLAKSDSLT---------------------AK--------------- 580 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEE-EecCHHHHhhChHHHH---------------------HH---------------
Confidence 94 58999999996 67876 5677766542111000 00
Q ss_pred HHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHH
Q 007982 331 EKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLL 410 (582)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl 410 (582)
+......... +. ....+.+.|++++++. ..|+++||+|+.|++++|+|+||||||||+
T Consensus 581 ------~l~~~~~~~~-~~---------~~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl 638 (1809)
T PRK00635 581 ------YLRQELTIPI-PE---------KRTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLI 638 (1809)
T ss_pred ------HhcCcccccC-cc---------cccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHH
Confidence 0000000000 00 0001234688888862 268999999999999999999999999999
Q ss_pred H---------HHhCCCCCC------------------------CcEEEEcCc--------------eeEE-----Eechh
Q 007982 411 K---------LMTGDLVPL------------------------DGMVRRHNH--------------LRIA-----QFHQH 438 (582)
Q Consensus 411 ~---------ll~Gl~~p~------------------------~G~i~~~~~--------------~~~~-----~~~q~ 438 (582)
+ .|.|...|. ++.+++.+- ...+ +.++.
T Consensus 639 ~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~ 718 (1809)
T PRK00635 639 NDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNT 718 (1809)
T ss_pred HHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecC
Confidence 9 666654331 111221000 0000 00110
Q ss_pred ---------------h---hh------------------hcCCcccHHHHHHh-------cCC-CC-hHHHHHHHHHhcC
Q 007982 439 ---------------L---AE------------------KLDMDMSALQYMIK-------EYP-GN-EEEKMRAAIGRFG 473 (582)
Q Consensus 439 ---------------~---~~------------------~~~~~~~~~~~~~~-------~~~-~~-~~~~~~~~l~~~g 473 (582)
+ .. ......++.+.+.. .+. .. ..+.+ ++|+.+|
T Consensus 719 ~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vG 797 (1809)
T PRK00635 719 PLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLG 797 (1809)
T ss_pred CCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcC
Confidence 0 00 00011223332211 011 11 12334 5788999
Q ss_pred CCCccccCCCCCCChhHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHh
Q 007982 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAY---RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQ 547 (582)
Q Consensus 474 l~~~~~~~~~~~LSgGqkqrv~lAral~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~ 547 (582)
|......+++.+|||||+|||+||++|+ .+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++ .
T Consensus 798 L~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~ 876 (1809)
T PRK00635 798 LDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-K 876 (1809)
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-H
Confidence 9764235677899999999999999997 699999999999999999999999988765 57999999999999 8
Q ss_pred hcCEEEEEe------CCeEEEEcCCHHHHHH
Q 007982 548 VAHEIWVCE------NQAVTRWEGDIMDFKL 572 (582)
Q Consensus 548 ~~d~i~~l~------~G~i~~~~g~~~~~~~ 572 (582)
+||+|++|. +|+++ ..|+++++..
T Consensus 877 ~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 877 VADYVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred hCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 999999996 67886 5899988754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=354.13 Aligned_cols=209 Identities=30% Similarity=0.433 Sum_probs=172.3
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH------HH
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE------RL 140 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~------~~ 140 (582)
||++++|+|.|+. ..+++||||+|++||++||||.||||||||+|||+++..|+.|.+ .+++. ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v----~v~G~di~~l~~~ 76 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV----FVDGQDLTALSEA 76 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE----EEcCEecccCChH
Confidence 5899999999976 479999999999999999999999999999999999999987653 22221 11
Q ss_pred HHHHHHHHhc--cccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 141 KLEKEAEILG--AQEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 141 ~~~~~~~~~~--~~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
.+++..+.++ +|... ..++++++...+ ...++.+.++|+.++|+.+||++ ..+++|.+|||||||||+||||
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d-k~~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD-KADRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh-hhccCchhcCcchhhHHHHHHH
Confidence 2333334443 22221 234455655444 46778899999999999999985 6789999999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|+.+|+|||+|||||+|||++.+.++++|++ ++.||++|||.|+.+..+|||+.+|++|+++. .|+..+.+.
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE-~G~v~~vF~ 231 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE-EGTVSEVFA 231 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE-eccHHHhhc
Confidence 9999999999999999999999999999875 47899999999999999999999999999975 566665543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=351.24 Aligned_cols=207 Identities=29% Similarity=0.436 Sum_probs=179.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
+++.+++++|.|+++.++++++||+|.+|++++|+|+||||||||+++|+|+++|++|.|...+. .++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 57899999999976568999999999999999999999999999999999999999999976542 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|+++|++..++ +..|+.+.+... .+.. ..+++.++|+.+|+.+... +++..|||||||||+||.+|+++|++
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCcceeeHHhhHHHHcCCCE
Confidence 99999987665 455666655432 1211 3467889999999998754 56689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
|||||||++||+.++..+.+.++++ +.|||++|||++++..+|||+|+|++|+++ ++|++.++....
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~~~ 230 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFNDA 230 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhhhh
Confidence 9999999999999999999999886 359999999999999999999999999996 699988887653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=344.25 Aligned_cols=193 Identities=26% Similarity=0.386 Sum_probs=166.7
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+++++||++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.+.+.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46799999999643 36899999999999999999999999999999999999999999987652
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--C---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--Y---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..+||++|++. +-+..|+.+++.-. + +. ...+.+..+++.+||.+...++++.+|||||||||+|||||+
T Consensus 81 R~~~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 25999999864 66788999987521 1 11 234567889999999876665667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
.+|++||.||||.+||.++...+.+++.++ +.||||||||.+.+ .+|||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeee
Confidence 999999999999999999999999998765 56999999999988 589999999999964
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=343.88 Aligned_cols=201 Identities=28% Similarity=0.428 Sum_probs=162.4
Q ss_pred ceEEeeeEEEECCee----eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHH-----
Q 007982 72 DIRIESLSVTFHGHD----LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKL----- 142 (582)
Q Consensus 72 ~i~v~nls~~y~~~~----il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~----- 142 (582)
+|+++|+++.|+++. ++++|||+|.+||++||+|+||||||||.++|+|+..++.|.+ .+++.....
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I----~~~G~~~~~~~~~~ 78 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI----LLDGKPLAPKKRAK 78 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE----EECCcccCccccch
Confidence 799999999998877 9999999999999999999999999999999999999986643 333322111
Q ss_pred --HHHHHHhccccCCC-c----chHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh
Q 007982 143 --EKEAEILGAQEDGG-G----EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 143 --~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
....+.+ +|++.. . .+..-+.+.+........++++.++|+.+|++..+.+++|.+|||||+|||||||||+
T Consensus 79 ~~~~~VQmV-FQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 79 AFYRPVQMV-FQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hhccceeEE-ecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 1111222 333321 1 1222233334332334556679999999999999999999999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEE
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 277 (582)
.+|++||||||||+||+.....++++|.+. +.|+||||||+..+..+||||++|++|+++..
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 999999999999999999999999988654 56999999999999999999999999999753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=347.88 Aligned_cols=196 Identities=30% Similarity=0.398 Sum_probs=156.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
.++++++++.|++..+|+|+||+|.+||+++||||||||||||||+|+|+..|+.|.+ .+++....-......+.+
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V----~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV----LLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE----EECCcccCCCCCCEEEEe
Confidence 6899999999999999999999999999999999999999999999999999986643 233221100000001112
Q ss_pred ccC---CCcchHHHHHHHHHc--CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 152 QED---GGGEQLERVYERLEA--LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 152 ~~~---~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
|.. +..+..+++...+.. ....+.++++.++|+.+||.+ ..+++|++|||||||||+|||||+.+|+|||||||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 222 122334454444432 355666779999999999985 57899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHh----hcCcEEEEEecCHHHHHhhcCeEEEEeCC
Q 007982 227 TNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNIIHMQNK 272 (582)
Q Consensus 227 t~~LD~~~~~~l~~~l~----~~~~tviivsHd~~~~~~~~d~i~~l~~G 272 (582)
+++||..++..+.+.|. +.+.|||+||||.+++-.++|||++|.++
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999987776654 45789999999999999999999999983
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=328.65 Aligned_cols=196 Identities=29% Similarity=0.463 Sum_probs=172.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~ 431 (582)
||+|+||++.|++++++|+||||+|++||++-|+||||||||||||+|++..+|++|.|...++ .+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999998877999999999999999999999999999999999999999999987653 36
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC-----C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY-----P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
+|.++|++. +-.+.|+++++.... + ..-..++.++|+.+||.+.....| .+|||||||||+||||++.+|+
T Consensus 81 IGvVFQD~r--LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDFR--LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeecc--ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCchHHHHHHHHHHHccCCC
Confidence 899999864 556788888876432 1 123467889999999998776666 6999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEc
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 564 (582)
|||.||||.+|||+....|++++.++ |.||||.|||.+++.++-.|++.+++|+++.++
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999888887664 679999999999999999999999999998644
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=351.02 Aligned_cols=208 Identities=26% Similarity=0.406 Sum_probs=165.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+++++||++.|+++.+++|+||++++|++++|+||||||||||||+|+|+.+|..|. +..++..+ ........
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~----V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE----VLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCE----EEECCCchhhcCHHHHhhh
Confidence 589999999999999999999999999999999999999999999999999987654 33333222 22333444
Q ss_pred hccccCC-----CcchHHHHHH----HHHcCC--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 149 LGAQEDG-----GGEQLERVYE----RLEALD--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 149 ~~~~~~~-----~~~~~~~~~~----~l~~~~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+++.++. ...+.+-+.. ....+. ..+.++.+.+.|+.+|+.+ +.++++.+|||||||||.|||||+++
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~-la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH-LADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH-HhcCcccccChhHHHHHHHHHHHhcC
Confidence 4432211 1222222211 111111 3344557899999999974 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++||||||||+||+.....++++++++ +.|+|+|+||++++.++||++++|++|+++. .|.+.+.+
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~evl 227 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPEEVL 227 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcchhc
Confidence 9999999999999999999999999876 5799999999999999999999999999975 57766554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=336.57 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=174.8
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE 147 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ 147 (582)
..|++++|+++|+++.+++|+||+|++||+++|+||||||||||||+|.|+..|+.|.+.. ...+.... .......
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i-~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI-DGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEE-cCcchhccCHHHHHHHHh
Confidence 3799999999999999999999999999999999999999999999999999998775421 11111111 1111122
Q ss_pred Hhc--cccC---CCcchHHHHHHHH---HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 148 ILG--AQED---GGGEQLERVYERL---EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 148 ~~~--~~~~---~~~~~~~~~~~~l---~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.++ +|.. ...++++++...+ ..++...+++.+..-|+.+||.....+++|++|||||++|++||||++.+|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence 222 2322 2234566664433 3577888899999999999998876889999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+|++||||+||||.+...+.++|+++ +.|+|+||||++.+..+|||+++|.+|+|+ +.|++++...
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 99999999999999999998888764 679999999999999999999999999997 4688887654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=347.40 Aligned_cols=203 Identities=27% Similarity=0.358 Sum_probs=179.5
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~ 433 (582)
+|+++++++.|+ ...+++||||+|+.||.+||.||||||||||||+|+|+..|++|.|..++. .++|
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 578999999996 467899999999999999999999999999999999999999999987654 4699
Q ss_pred EechhhhhhcCCcccHHHHHHhcC------C--CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY------P--GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
+++|+++ +.+.+|+.+++.... + .....++.++|..+.|++...++| .+|||||||||+|||||+.+|+
T Consensus 81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-AQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-hhcChHHHHHHHHHHHhhcCCC
Confidence 9999976 677899999987543 1 123567889999999998877666 7999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+||||||+++||..-+..+...|++ ++.|+|+||||.+++.++||||++|++|+|. ..|+++++..+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie-qvg~p~ev~~~ 228 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE-QVGPPDEVYDH 228 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee-eeCCHHHHhcC
Confidence 9999999999999998888877765 4789999999999999999999999999996 47888887654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=361.15 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=179.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQ 434 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~ 434 (582)
.+.++++|+++.|+ +..+++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|...+. +.+++
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 46799999999997 578999999999999999999999999999999999999999999987653 46899
Q ss_pred echhhhhhcCCcccHHHHHHhcCC-----C-C-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYP-----G-N-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
++|+++ +.+.+|+.+|+..... . . ..+++.++|+.++|.+...++| ++|||||||||+|||||+.+|+||
T Consensus 82 VFQ~YA--LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSYA--LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-HQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCcc--cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-hhhChHHHHHHHHHHHhhcCcchh
Confidence 999965 7788999999865432 1 1 2357999999999998776655 899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||||.++||..-+..+...++ +.+.|.|+||||.+++..++|||.||++|+|. --|+++++...
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~-Q~gtP~eiY~~ 227 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE-QVGTPEEIYER 227 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee-ecCCHHHHhhC
Confidence 9999999999988877766554 45789999999999999999999999999996 47888887664
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=358.40 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=172.8
Q ss_pred eEEEEEEEEEecC---CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTP---DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
||+++|++++|++ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999963 246999999999999999999999999999999999999999999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
..++|++|++. +....|+.+++... .+.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHh
Confidence 25899999863 44456888776532 1111 2356788999999987654 4568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|++.++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999988764 679999999999999999999999999997 478888775
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=353.75 Aligned_cols=206 Identities=24% Similarity=0.323 Sum_probs=177.0
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeE
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRI 432 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~ 432 (582)
..++|+++|++++|++ ..+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|...+. ..+
T Consensus 4 ~~~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred CCceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 3568999999999964 67999999999999999999999999999999999999999999987652 358
Q ss_pred EEechhhhhhcCCcccHHHHHHh--c-CCC--C-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIK--E-YPG--N-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~--~-~~~--~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+|++|... +....|+.+++.. . +.. . ...++.++++.+++.... ++++++|||||||||+||+||+.+|++
T Consensus 83 g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 83 GVVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-DAKVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred EEEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-cCchhhCCHHHHHHHHHHHHHhCCCCE
Confidence 99999853 4456788877642 1 111 1 234577899999997654 467799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||||||+|||+.++..+.+.|+++ +.|||++||+++++.++||+|++|++|+++ +.|+++++...
T Consensus 160 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence 9999999999999999999999876 579999999999999999999999999996 58999888654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=353.84 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=178.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEe
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQF 435 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~ 435 (582)
..|+++|+++.|++.. +++++||+|..||+++|+||||||||||||+|+|+..|++|+|...+. +.++++
T Consensus 2 ~~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 2 AELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred cEEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 3689999999997433 899999999999999999999999999999999999999999987653 469999
Q ss_pred chhhhhhcCCcccHHHHHHhcCC-----CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKEYP-----GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+|+++ +.+.+|+.+++..... +. ..++++++++.++|++.+.++| .+|||||||||+|||||+++|+++||
T Consensus 81 FQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 81 FQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred eCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-ccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99975 6788999999865321 12 3567899999999999887665 89999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||+|+||...+..+...|++ ++.|+|+||||..++..++|||+||++|+|.. -|++.++.+.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely~~ 224 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELYER 224 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHhhC
Confidence 999999999998887777665 46799999999999999999999999999975 6777777654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=341.68 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=160.1
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
.+|+++|++++|++.++|+||||+|++|++++||||||||||||+|+|.|+..|..|.+. +.+...........++
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~----~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK----IFGKPVRKRRKRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE----EccccccccccCCeEE
Confidence 379999999999976899999999999999999999999999999999998888765432 2111110000001122
Q ss_pred cccC-------CCcchHHHHHHH----H--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 151 AQED-------GGGEQLERVYER----L--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 151 ~~~~-------~~~~~~~~~~~~----l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+.++ ....+.+-+.-. . .........+.+.++|+.+|+. ++.++++.+|||||+|||.|||||+.+
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccC
Confidence 1111 112222222111 0 0111233468899999999997 578999999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|++|||||||+|+|+.++..++++|+++ ++|||+||||++.+..+||+|+.|++..+ +.|+++++..
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~--~~G~~~~~~~ 227 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI--ASGPPEEVLT 227 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE--eccChhhccC
Confidence 9999999999999999999999998765 67999999999999999999999976543 4688777653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=351.49 Aligned_cols=207 Identities=28% Similarity=0.404 Sum_probs=180.2
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQ 434 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~ 434 (582)
.+++++|+++.|+.++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|...+. ..+||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 35789999999963468999999999999999999999999999999999999999999987762 25899
Q ss_pred echhhhhhcCCcccHHHHHHh---cCCC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIK---EYPG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|.+. +...+|+.+++.. .+.. ...++++++++.+||.... ++++++||+||||||.||+||+.+|+|||
T Consensus 83 ~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~lli 159 (293)
T COG1131 83 VPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELLI 159 (293)
T ss_pred EccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999865 5667888877642 2221 2356799999999998744 56789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW---D-GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
|||||+||||.++..+.+.|+++ + .|||++||.++++..+||+|++|++|+++ +.|+.+++.....
T Consensus 160 LDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~~~ 229 (293)
T COG1131 160 LDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEKFG 229 (293)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHhhc
Confidence 99999999999999999999876 3 59999999999999999999999999997 5789888776644
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=338.52 Aligned_cols=192 Identities=30% Similarity=0.447 Sum_probs=163.0
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------e
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------L 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~ 430 (582)
+|+++|++++|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999643 46999999999999999999999999999999999999999999987652 1
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|... +....++.+++... ... ...+++.++++.+|+.+... +++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-ALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCC
Confidence 4788888753 33456777766421 111 12456788999999986554 456899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999998876 57999999999999999999999999974
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=339.81 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=169.2
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------eeE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LRI 432 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~~ 432 (582)
|+++|+++.|+ +..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999996 467999999999999999999999999999999999999999999987542 237
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
+|++|... +....++.+++... +.. . ..+++.++++.+|+.... ++++.+|||||||||+|||||+.+|+
T Consensus 80 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-DLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCcc--cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 88888753 33456777776432 111 1 134578899999997655 45678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence 99999999999999999999998764 579999999999999999999999999996 578887764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=325.33 Aligned_cols=210 Identities=27% Similarity=0.380 Sum_probs=166.2
Q ss_pred ceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH---HHHHHHHHH
Q 007982 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE---RLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~ 147 (582)
+|+++||++.| +++.+|+||||+|++||+++||||||||||||||+|+|+..++.|.+... ..+.. ...+++...
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~-g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN-GVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEec-ccchhccchHHHHHHHH
Confidence 79999999999 78899999999999999999999999999999999999988876643211 00101 011222233
Q ss_pred Hhcc--ccCC---CcchHHHHHH----------HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 148 ILGA--QEDG---GGEQLERVYE----------RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~----------~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
.+++ |..+ ...++.++.. .+-.+...+.+..+.+.|+++|+.+. ...+..+|||||+|||+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-AYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HHHHhccCCcchhHHHHHHH
Confidence 3332 2221 2333444322 22234445667789999999999764 56789999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||+++|++||.|||+++|||.+...++++|++. +.|||+..|+++.+.++||||+-|++|+++ |+|+.++.
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el 235 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASEL 235 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhh
Confidence 999999999999999999999999999999764 689999999999999999999999999997 67887663
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=338.47 Aligned_cols=209 Identities=28% Similarity=0.404 Sum_probs=170.7
Q ss_pred ceEEeeeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH----HHHHHHH
Q 007982 72 DIRIESLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER----LKLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~----~~~~~~~ 146 (582)
+++++|++++|++. .+|+++||+|++|++++|+|+||||||||+++|+|+..|..|.+ .+++.. .......
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v----~~~g~~~~~~~~~~~~~ 78 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV----LVDGLDTSSEKSLLELR 78 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE----EECCeeccchhhHHHhh
Confidence 78999999999775 99999999999999999999999999999999999999986653 222221 1122222
Q ss_pred HHhc--cccCCCc----chHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILG--AQEDGGG----EQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~--~~~~~~~----~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..++ +|++..+ .+.+++...+. .++.+++++++.++|+.+|+.+ ..++++.+|||||||||+||.+|+.+|
T Consensus 79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHhhHHHHcCC
Confidence 3333 3433322 33444544433 3556678899999999999975 578999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
++|||||||++||+.++.++++.++++ +.|+|++|||++++..+||++++|++|+++ +.|.+.++..
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~ 228 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFN 228 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhh
Confidence 999999999999999999999999876 469999999999999999999999999996 5677666553
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=357.14 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=175.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|...+. ..++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6899999999943467999999999999999999999999999999999999999999987653 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCC-----CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP-----GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|++. +.+..|+.+++..... .. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+|||||
T Consensus 83 Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNYA--LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-RKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCcc--ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9864 5567788888754321 11 2356789999999987654 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++...
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~-~~g~~~~~~~~ 225 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE-QIGTPVEVYEK 225 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EECCHHHHHhC
Confidence 999999999999988887654 679999999999999999999999999997 47888887553
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=353.42 Aligned_cols=207 Identities=24% Similarity=0.337 Sum_probs=177.0
Q ss_pred CCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------ee
Q 007982 362 LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LR 431 (582)
Q Consensus 362 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~ 431 (582)
.+.++|+++|++++|+ ++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|...+. ..
T Consensus 37 ~~~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 37 MSTVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred CCceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 3456899999999996 467999999999999999999999999999999999999999999987652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHh---cCCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIK---EYPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|... +....++.+++.. .+... ..+.+.++++.++|.... ++++.+|||||||||+||+||+.+|+
T Consensus 116 ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 116 IGVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-DARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-CCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 899998753 4455677777642 12111 234567889999998654 45679999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+|||||||+|||+.++..+.++|+++ +.|||++||+++++.++||+|++|++|+++ +.|++++++..
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence 99999999999999999999999875 579999999999999999999999999996 68999988654
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=331.99 Aligned_cols=192 Identities=22% Similarity=0.389 Sum_probs=163.0
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEEEechhh
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIAQFHQHL 439 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~~~~q~~ 439 (582)
+++|++++|++.+.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+. ..++|++|..
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999964257999999999999999999999999999999999999999999987653 2588999885
Q ss_pred hhhcCCcccHHHHHHhcC--CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 007982 440 AEKLDMDMSALQYMIKEY--PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 517 (582)
...+ +..++.+++.... ......++.++++.+|+.+... +++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 3222 2457777764321 1223356889999999986554 5668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 518 IETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 518 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999876 579999999999999999999999999873
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=327.90 Aligned_cols=202 Identities=26% Similarity=0.426 Sum_probs=156.6
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee---ee-chHHHHHHH
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV---IS-CDEERLKLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~---i~-~~~~~~~~~ 143 (582)
+++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|+++..|+.|.+... +. ...... ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~-~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKEL-AK 79 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHH-HH
Confidence 3679999999953 379999999999999999999999999999999999999987653211 11 111111 11
Q ss_pred HHHHHhccccC-----CCcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 144 KEAEILGAQED-----GGGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 144 ~~~~~~~~~~~-----~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
-....+++.++ +..+..+++.-. +..........++.++++.+|+.+...+++|.+|||||||||||||||+.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 12233443222 223445555432 22333335677889999999998666558999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
+|++||.||||.+||.++...+++++.++ +.||||||||.+.+. +|||++.|++|++.
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 99999999999999999999999998765 679999999988775 89999999999853
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=331.15 Aligned_cols=205 Identities=31% Similarity=0.419 Sum_probs=178.1
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.+++++++++++|++ ..+++||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 2 ~~lL~v~~l~k~FGG-l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 2 TPLLEVRGLSKRFGG-LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred CceeeeccceeecCC-EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 368999999999964 78999999999999999999999999999999999999999999998764 23
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC------------CC---C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY------------PG---N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~------------~~---~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
+++-+|.. .+...+|+++++.-.. +. . ..+++.++|+.+||.+.. +.+.++||+|||+|
T Consensus 81 i~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-~~~A~~LsyG~qR~ 157 (250)
T COG0411 81 IARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-DRPAGNLSYGQQRR 157 (250)
T ss_pred ceeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-cchhhcCChhHhHH
Confidence 56667775 3567889998875320 11 1 235688999999998765 46789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
+.|||||+.+|++||||||.+||.+.....+.+.|++. +.||++|.|||+++..+||||+||+.|+++ .+|++++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~e 236 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEE 236 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHH
Confidence 99999999999999999999999999999999988765 479999999999999999999999999997 5999999
Q ss_pred HHHH
Q 007982 570 FKLH 573 (582)
Q Consensus 570 ~~~~ 573 (582)
...+
T Consensus 237 V~~d 240 (250)
T COG0411 237 VRNN 240 (250)
T ss_pred HhcC
Confidence 8764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=318.66 Aligned_cols=210 Identities=25% Similarity=0.411 Sum_probs=168.2
Q ss_pred ceEEeeeEEEECCee-eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHD-LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~-il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
||++.+++++|+..+ +++||||+++.|+++||+|||||||||+||+|+.+..|+.|.+... .++....+ ....+.++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~id-g~d~~~~p-~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID-GVDTVRDP-SFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEe-ecccccCh-HHHhhhcc
Confidence 589999999999875 9999999999999999999999999999999999988886643211 12211111 11112222
Q ss_pred cccCC-C------cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 AQEDG-G------GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~~~~~-~------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
..+.. . .......+..+..+...+.+.++.++.+.|++.+ ..++++.+||-||||||+|||||+++|+++||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 11111 1 1112223456667778888999999999999965 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||||||..++..+.++++++ +++||++||++.++..+||+|++|++|+++ +.|+.+...
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~ 221 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALD 221 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHH
Confidence 9999999999999999998766 679999999999999999999999999997 567776543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=369.68 Aligned_cols=207 Identities=33% Similarity=0.566 Sum_probs=181.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
.+|+++|++++|+ ++++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|......+++|++|+.. .+
T Consensus 2 ~~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~ 78 (530)
T COG0488 2 SMITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LD 78 (530)
T ss_pred ceEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cC
Confidence 4789999999995 57899999999999999999999999999999999999999999999988889999999864 23
Q ss_pred CcccHHHHHHhcCC------------------------------------CChHHHHHHHHHhcCCCCccccCCCCCCCh
Q 007982 445 MDMSALQYMIKEYP------------------------------------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSD 488 (582)
Q Consensus 445 ~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 488 (582)
...|+.+.+..... ...+.++..+|..+|++.. .+|+++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 33355444332110 0113467778888999876 578999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHH
Q 007982 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 489 Gqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 568 (582)
|||.||+||++|+.+|++|||||||||||.+++..|.+.|.++.+|||+||||.+|+..+|++|+.++.|++..|.|+++
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007982 569 DFKLHLKA 576 (582)
Q Consensus 569 ~~~~~~~~ 576 (582)
.|.+.-..
T Consensus 237 ~~~~~r~~ 244 (530)
T COG0488 237 SYLEQKAE 244 (530)
T ss_pred HHHHHHHH
Confidence 99886443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=353.75 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=176.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQ 434 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~ 434 (582)
.++|+++|+++.|+ +..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|...+. ..++|
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 45899999999996 467999999999999999999999999999999999999999999987653 46899
Q ss_pred echhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|++. +.+.+|+.+++.... +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||
T Consensus 83 vfQ~~~--lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 83 VFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-RYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EeCCcc--cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999864 556678888876421 111 2457889999999987654 4568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++.. .|+++++..
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~~ 226 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELYR 226 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999998888654 6799999999999999999999999999974 789888754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=348.24 Aligned_cols=204 Identities=24% Similarity=0.340 Sum_probs=173.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQ 434 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~ 434 (582)
.+|+++|++++|++ ..+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 57999999999964 67999999999999999999999999999999999999999999987642 35889
Q ss_pred echhhhhhcCCcccHHHHHHh--c-CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIK--E-YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~--~-~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|... +....|+.+++.. . +... ..+.+.++++.+++.... ++++.+|||||||||+|||||+.+|++||
T Consensus 82 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-DVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-cCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998753 3445677777642 1 1111 124567889999998654 45678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||||+|||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ +.|+++++...
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 225 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALIDE 225 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence 99999999999999999999876 679999999999999999999999999996 58888887543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=318.80 Aligned_cols=205 Identities=22% Similarity=0.343 Sum_probs=173.2
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEe
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQF 435 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~ 435 (582)
||++.+++++|++...+++||||++..|+++||.|||||||||+||+|++++.|++|.|...+. ..+|.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 5889999999986444899999999999999999999999999999999999999999987642 235555
Q ss_pred chhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+.. ..+...+|+.+++... ..+ ....++.++.++|++.+..+ +++..+|-|+||||+|||||+++|++|||
T Consensus 81 ~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 81 FGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred cCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-HHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 522 2344567777776432 112 23567889999999987665 45689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
||||+|||+.+...+.+.+... +.+||++||++++++.+||+|+++++|+++ +.|+++.+.+.-
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~ 224 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDART 224 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHH
Confidence 9999999999999999888765 679999999999999999999999999996 699999887753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=338.86 Aligned_cols=195 Identities=26% Similarity=0.299 Sum_probs=167.8
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEech
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQ 437 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q 437 (582)
.++|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 10 ~~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 467999999999964 67999999999999999999999999999999999999999999987542 24889988
Q ss_pred hhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 007982 438 HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 517 (582)
... +....++.+++.........+++.++++.+|+.+... +++.+|||||||||+|||+|+.+|++|||||||+|||
T Consensus 89 ~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred Ccc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 753 3344688887754322223456788999999986554 5668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 518 IETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 518 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999988764 5799999999999999999999999999964
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=332.36 Aligned_cols=192 Identities=28% Similarity=0.373 Sum_probs=163.3
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 468999999964 67999999999999999999999999999999999999999999987542 24788888
Q ss_pred hhhhhcCCcccHHHHHHhc--CCC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKE--YPG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++... ... ...+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-NRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 753 33456777766421 111 1234578899999998654 45668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
||+|||+.++..+.+.|.++ +.|||++|||++++..+||+|++|++|+++.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999998774 5799999999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=342.42 Aligned_cols=203 Identities=26% Similarity=0.369 Sum_probs=171.6
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
++|+++|+++.|++...+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 47999999999964457999999999999999999999999999999999999999999987652 2488
Q ss_pred EechhhhhhcCCcccHHHHHHhcC-----CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY-----PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|.+...+ +..++.+++.... .. ...+++.++++.+|+.+.. ++++.+|||||+|||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-DKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853222 3457777764311 11 1234678899999997655 4566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
||||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|+++++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL-AEGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHh
Confidence 999999999999999999998765 579999999999999999999999999997 47877654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=356.53 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=174.4
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
++|+++|++++|++ +.+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|...+. ..++
T Consensus 2 ~~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 47999999999964 68999999999999999999999999999999999999999999987652 2488
Q ss_pred EechhhhhhcCCcccHHHHHHhc-------CC---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE-------YP---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
+++|... +.+..++.+++... +. ....++++++++.+|+.+.. ++++.+|||||||||+|||||+++
T Consensus 81 ~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-DRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHHHHHcC
Confidence 9988753 44567787776431 11 12345688999999998654 467899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|++|||||||+|||+.++..+.++|+++ +.|||++|||++++.++|||+++|++|+++ ..|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 9999999999999999999999988875 569999999999999999999999999997 589998864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=347.01 Aligned_cols=205 Identities=20% Similarity=0.304 Sum_probs=170.8
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
+|+++|+++.|++. ..+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 25999999999999999999999999999999999999999999977421
Q ss_pred -----------------------eeEEEechhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCcccc
Q 007982 430 -----------------------LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQV 480 (582)
Q Consensus 430 -----------------------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~ 480 (582)
..++|++|++...+ +..++.+++... .+. ...+++.++++.+||.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 13789999753333 245777776422 111 123568899999999733334
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeC
Q 007982 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCEN 557 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~ 557 (582)
+++.+|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 567899999999999999999999999999999999999999999988765 67999999999999999999999999
Q ss_pred CeEEEEcCCHHHHHH
Q 007982 558 QAVTRWEGDIMDFKL 572 (582)
Q Consensus 558 G~i~~~~g~~~~~~~ 572 (582)
|+++ .+|+++++..
T Consensus 241 G~i~-~~g~~~~~~~ 254 (305)
T PRK13651 241 GKII-KDGDTYDILS 254 (305)
T ss_pred CEEE-EECCHHHHhc
Confidence 9996 5788888654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=344.84 Aligned_cols=205 Identities=26% Similarity=0.353 Sum_probs=171.0
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
||+++|++|.|+++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999632 25999999999999999999999999999999999999999999987652
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|++...+ +..++.+++.... +.. ...++.++++.+||.....++++.+|||||||||+|||+|
T Consensus 81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 14788998753233 2357777764321 111 2345788899999964333467799999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ++|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence 9999999999999999999999999988764 579999999999999999999999999997 5899888754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=332.05 Aligned_cols=198 Identities=26% Similarity=0.380 Sum_probs=166.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEec
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFH 436 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~ 436 (582)
|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 478999999964 67999999999999999999999999999999999999999999987652 2478888
Q ss_pred hhhhhhcCCcccHHHHHHhc---CC--CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKE---YP--GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~---~~--~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|... +....++.+++... .. .. ..+++.++++.+|+.... +.++.+|||||||||+||||++.+|++||||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-DRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8753 33445776665321 11 11 234678999999997654 4567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
|||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|++++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 218 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPEE 218 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChHH
Confidence 999999999999999988764 5799999999999999999999999999974 676654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=352.31 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=176.2
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEe
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQF 435 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~ 435 (582)
++|+++|++++|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|...+. ..++|+
T Consensus 3 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 47999999999964 67999999999999999999999999999999999999999999988652 358999
Q ss_pred chhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+|++. +.+..|+.+++.... +.. ...++.++++.+||.+... +++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSYA--LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-KYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 555678888875321 111 2456889999999987665 45689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~-~~g~~~~~~~ 224 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE-QVGTPQEIYR 224 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999998888764 679999999999999999999999999997 4788888765
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=336.62 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=170.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~ 431 (582)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 4789999999962457999999999999999999999999999999999999999999987542 13
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC--------------CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY--------------PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 497 (582)
++|++|... +....++.+++.... .....+++.++++.+|+.... ++++.+|||||||||+||
T Consensus 81 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-YQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHHH
Confidence 788888753 334567777664211 111235678899999997654 456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ ..|+++++.+
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 235 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELDD 235 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhCh
Confidence 9999999999999999999999999999998765 569999999999999999999999999997 5788887643
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=348.16 Aligned_cols=208 Identities=23% Similarity=0.302 Sum_probs=174.6
Q ss_pred CCeEEEEEEEEEecC---------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----
Q 007982 364 PPVLQFVEVTFGYTP---------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~---------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----- 429 (582)
+++|+++||++.|+. ...+|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999962 246899999999999999999999999999999999999999999987652
Q ss_pred ---------eeEEEechhhhhhcCCcccHHHHHHh---c---CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 430 ---------LRIAQFHQHLAEKLDMDMSALQYMIK---E---YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 430 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~---~---~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
..++|++|+....++...++.+.+.. . ... ...+++.++|+.+||.....++++.+|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 24899999875556666666655432 1 111 1235688999999996433345668999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
|+|||||+.+|+|||+||||++||+.++..+.++|.++ +.|||+||||++++.++||+|++|++|+|++ .|+.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive-~g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE-KGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999999999999988764 6799999999999999999999999999985 788777
Q ss_pred HHH
Q 007982 570 FKL 572 (582)
Q Consensus 570 ~~~ 572 (582)
+..
T Consensus 242 ~~~ 244 (327)
T PRK11308 242 IFN 244 (327)
T ss_pred Hhc
Confidence 654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=344.18 Aligned_cols=205 Identities=25% Similarity=0.305 Sum_probs=171.1
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
.|+++|++++|++. .++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 46999999999999999999999999999999999999999999987652
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|.+...+. ..++.+++... .+.. ..+.+.++++.+||.....++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 247899997532332 35777766421 1111 2346788999999974333566799999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++.++||||++|++|+++ ++|++.++..
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 235 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIFA 235 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999999988764 579999999999999999999999999997 5888887643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=348.52 Aligned_cols=208 Identities=18% Similarity=0.280 Sum_probs=174.8
Q ss_pred CCeEEEEEEEEEecC------------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--
Q 007982 364 PPVLQFVEVTFGYTP------------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~------------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-- 429 (582)
+++|+++||+++|+. ...+++|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 578999999999952 246899999999999999999999999999999999999999999987542
Q ss_pred ------------eeEEEechhhhhhcCCcccHHHHHHhc---C----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChh
Q 007982 430 ------------LRIAQFHQHLAEKLDMDMSALQYMIKE---Y----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDG 489 (582)
Q Consensus 430 ------------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 489 (582)
..++|++|++...+.+..++.+++... + ... ..+.+.++++.+|+.....++.+.+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 258999998754466667777776421 1 111 23457889999999543334556899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcC
Q 007982 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEG 565 (582)
Q Consensus 490 qkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 565 (582)
|+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|.+|+|++ .|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-LG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999999888764 5799999999999999999999999999975 78
Q ss_pred CHHHHHH
Q 007982 566 DIMDFKL 572 (582)
Q Consensus 566 ~~~~~~~ 572 (582)
+.+++..
T Consensus 245 ~~~~i~~ 251 (331)
T PRK15079 245 TYDEVYH 251 (331)
T ss_pred CHHHHHc
Confidence 8777654
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=334.64 Aligned_cols=202 Identities=27% Similarity=0.410 Sum_probs=169.1
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------eeE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LRI 432 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~~ 432 (582)
|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999964257999999999999999999999999999999999999999999987542 137
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC--------------CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY--------------PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
+|++|... +....++.+++.... .....+++.++++.+|+.... ++++.+|||||||||+|||
T Consensus 81 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-YQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-CCCcccCCHHHHHHHHHHH
Confidence 78888753 334467777664211 111234678899999997654 4566899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 234 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD 234 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecCHHHhhH
Confidence 999999999999999999999999999988764 579999999999999999999999999997 5788887744
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=340.17 Aligned_cols=205 Identities=23% Similarity=0.358 Sum_probs=172.1
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+.++|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 4 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 4 VANLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ccceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 356899999999996 467999999999999999999999999999999999999999999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc---CCC--C--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE---YPG--N--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~--~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..++|++|... +....++.+++... ... . ....+.++++.+|+.+.. ++++.+|||||||||+|||||+
T Consensus 83 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 83 RKRMSMLFQSGA--LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-KLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred hhcEEEEecccc--cCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHh
Confidence 13788888743 33445777766421 111 1 124567889999998654 4566899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+.+++.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 233 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQA 233 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999999999988775 569999999999999999999999999996 5788877654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=334.45 Aligned_cols=201 Identities=26% Similarity=0.305 Sum_probs=169.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 4899999999964 67999999999999999999999999999999999999999999987652 2478888
Q ss_pred hhhhhhcCCcccHHHHHHhcC---C-----CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 437 QHLAEKLDMDMSALQYMIKEY---P-----GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~---~-----~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|.+. +....++.+++.... . .. ..+.+.++++.+|+.... ++++.+|||||+|||+|||||+.+|++
T Consensus 81 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-hcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8753 334467777664211 1 11 124567889999997654 456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEVY 225 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHHh
Confidence 9999999999999999999998765 569999999999999999999999999996 578887764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=342.09 Aligned_cols=205 Identities=23% Similarity=0.328 Sum_probs=171.1
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
.|+++||++.|++. +++|+||||+|.+||++||+||||||||||+++|+|+++|++|+|...+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38899999999642 36999999999999999999999999999999999999999999977541
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCC-ccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTG-KAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..++|++|.+...+ +..++.+++... .... ..+++.++++.+||.. ...++++.+|||||||||+|||||+
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 24789999753222 345777776421 1111 2346788999999962 2334667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++ .+|+.+++..
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998764 579999999999999999999999999997 4888888754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=350.08 Aligned_cols=209 Identities=28% Similarity=0.408 Sum_probs=169.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HHHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 150 (582)
.|+++||+|+|++..+++|+||+|++||+++|+||||||||||||+|+|+..|+.|.+. +++..+ .+......++
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~----l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL----LDGEDITDVPPEKRPIG 80 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEECCCCChhhcccc
Confidence 69999999999999999999999999999999999999999999999999999977542 222111 0111111122
Q ss_pred --cccC---CCcchHHHHHHHHHc---CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 151 --AQED---GGGEQLERVYERLEA---LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
+|.. +..++.+++...+.. ....+.++++.++|+.+++++ +.+++|++|||||||||||||||+.+|++||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 2222 334566777666651 234567789999999999986 6789999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHh----hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~----~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||||.|+||..-+..+...|+ +.+.|.|+||||.+++..++|||++|++|+|.. .|+++++..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q-~gtP~eiY~ 226 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ-VGTPEEIYE 226 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee-cCCHHHHhh
Confidence 999999999988887776654 458899999999999999999999999999964 577776543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=350.67 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=171.9
Q ss_pred eEEEEEEEEEec--C-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYT--P-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~--~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
||+++|++++|+ + .+.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 588999999996 2 357999999999999999999999999999999999999999999987642
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
..++|++|+.. +....++.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHc
Confidence 24889998753 44456777776432 1 111 2346788999999986544 5668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|+..++..
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~~~ 230 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV-EQGTVSEVFS 230 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999998775 579999999999999999999999999997 4788877653
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=329.49 Aligned_cols=191 Identities=28% Similarity=0.443 Sum_probs=161.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~ 431 (582)
+|+++|+++.|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 4789999999953467999999999999999999999999999999999999999999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|... +....++.+++... ... ...+++.++++.+|+.... ++++.+|||||+|||+|||||+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA-DAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 788888753 33446777665431 111 1235678899999998654 35668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999998875 6799999999999999999999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=330.74 Aligned_cols=193 Identities=29% Similarity=0.356 Sum_probs=162.9
Q ss_pred EEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEech
Q 007982 367 LQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q 437 (582)
|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 57999999999999999999999999999999999999999999987652 35889988
Q ss_pred hhhhhcCCcccHHHHHHhc--CCC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKE--YPG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++... ... ...+.+.++++.+|+..... +++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 753 33346777665421 111 12356788999999976544 5568999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEe--CCeEEE
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCE--NQAVTR 562 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~--~G~i~~ 562 (582)
||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999998764 5799999999999999999999999 799864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.40 Aligned_cols=205 Identities=24% Similarity=0.337 Sum_probs=170.7
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
+|+++|+++.|++. +.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58899999999632 46999999999999999999999999999999999999999999987652
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc---CCC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE---YPG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|.+...+. ..++.+++... ... ...+++.++++.+||......+++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 137888887532222 45777776421 111 12346788999999963333567799999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+.+++..
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999998875 469999999999999999999999999996 5788887654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=344.35 Aligned_cols=207 Identities=19% Similarity=0.278 Sum_probs=171.2
Q ss_pred CCCeEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------
Q 007982 363 PPPVLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------- 429 (582)
.+++|+++|++|.|++. .++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|...+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 35789999999999642 35999999999999999999999999999999999999999999987531
Q ss_pred ------------------eeEEEechhhhhhcCCcccHHHHHHhcC--CC-C---hHHHHHHHHHhcCCCCccccCCCCC
Q 007982 430 ------------------LRIAQFHQHLAEKLDMDMSALQYMIKEY--PG-N---EEEKMRAAIGRFGLTGKAQVMPMKN 485 (582)
Q Consensus 430 ------------------~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~ 485 (582)
..++|++|.+...+ +..++.+++.... .. . ...++.++++.+||......+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 13788888753223 2347777764321 11 1 2345778899999963223456689
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 486 LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~- 255 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL- 255 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-
Confidence 9999999999999999999999999999999999999999998764 579999999999999999999999999997
Q ss_pred EcCCHHHHH
Q 007982 563 WEGDIMDFK 571 (582)
Q Consensus 563 ~~g~~~~~~ 571 (582)
.+|+.+++.
T Consensus 256 ~~g~~~~~~ 264 (320)
T PRK13631 256 KTGTPYEIF 264 (320)
T ss_pred EeCCHHHHh
Confidence 478888764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=333.45 Aligned_cols=200 Identities=30% Similarity=0.424 Sum_probs=168.6
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~ 434 (582)
|+++|+++.|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 468999999964 67999999999999999999999999999999999999999999987542 23788
Q ss_pred echhhhhhcCCcccHHHHHHhcC---CC-------------ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY---PG-------------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
++|.+. +....|+.+++.... .. ...+.+.++++.+|+.... ++++.+|||||||||+|||
T Consensus 80 v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-DRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-hCChhhCCHHHHHHHHHHH
Confidence 888753 344567777654211 00 1234578899999997654 4567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEVR 231 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHhc
Confidence 999999999999999999999999999998765 579999999999999999999999999996 578887764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=350.91 Aligned_cols=205 Identities=23% Similarity=0.346 Sum_probs=176.9
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEE
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIA 433 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~ 433 (582)
..++|+++|+++.|++ ..+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+. ..++
T Consensus 11 ~~~~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3568999999999964 67999999999999999999999999999999999999999999987653 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|++. +.+.+++.+++.... +.. ..+++.++++.+||.+...+ ++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-KPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCcc--cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999864 556778888875432 111 13467889999999876654 55899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||+|++|++|++.. .|++.++..
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~i~~ 234 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ-DGTPREIYE 234 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999998888764 6799999999999999999999999999974 788888765
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.93 Aligned_cols=208 Identities=21% Similarity=0.296 Sum_probs=170.1
Q ss_pred CCeEEEEEEEEEecC--------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------
Q 007982 364 PPVLQFVEVTFGYTP--------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------ 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------ 429 (582)
+++|+++||+++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 357999999999952 246999999999999999999999999999999999999999999987542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHh---cC---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIK---EY---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|.....+....++.+++.. .. .. ...+.+.++++.+|+.....+.++.+|||||+|||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 24788888753223334455544421 11 11 12346788999999953333456689999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++. +.|+++++..
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 9999999999999999999999999999988764 579999999999999999999999999996 5788877653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=329.74 Aligned_cols=191 Identities=30% Similarity=0.452 Sum_probs=161.2
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEechhhhh
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQHLAE 441 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q~~~~ 441 (582)
+++|++++|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++..
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 36899999964 67999999999999999999999999999999999999999999998763 358999997642
Q ss_pred hcCCcccHHHHHHhcCC----------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 442 KLDMDMSALQYMIKEYP----------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 442 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
...+..++.+++..... ....+++.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-DRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 22234678777653211 11234678899999997544 45678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 512 PTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
||+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|.+
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 99999999999999998875 47999999999999999999999988643
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=351.94 Aligned_cols=202 Identities=24% Similarity=0.294 Sum_probs=173.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
.|+++|++++|++ +.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 5899999999964 67999999999999999999999999999999999999999999987542 2489999
Q ss_pred hhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|... +.+..|+.+++.... ... ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9853 445678888775321 111 2356888999999986554 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~-~~g~~~~i~~ 223 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999998888764 679999999999999999999999999997 4788888754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=335.00 Aligned_cols=205 Identities=22% Similarity=0.350 Sum_probs=172.4
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
...|+++|+++.|++ +.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 456899999999964 67999999999999999999999999999999999999999999976542
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHhc----CC---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHH
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIKE----YP---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 492 (582)
..++|++|... +....++.+++... .. .....++.++++.+|+.......++.+|||||||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 23788888753 33346777776421 11 1123567889999999865434567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999999999999999988765 579999999999999999999999999997 5788887
Q ss_pred HHH
Q 007982 570 FKL 572 (582)
Q Consensus 570 ~~~ 572 (582)
+..
T Consensus 239 ~~~ 241 (257)
T PRK10619 239 LFG 241 (257)
T ss_pred hhh
Confidence 753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=333.13 Aligned_cols=210 Identities=26% Similarity=0.362 Sum_probs=167.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee--eeechHHHHHHHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA--VISCDEERLKLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 149 (582)
+|.++|+++.|+...+++||||+|+.||.++|+|||||||||||++|+|++.|+.|.+.. ..-.+... .......+
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~--~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN--LAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc--cchhhcce
Confidence 689999999999999999999999999999999999999999999999999998765421 11112222 12222334
Q ss_pred ccccC-----CCcchHHHHHHHHH----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 150 GAQED-----GGGEQLERVYERLE----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 150 ~~~~~-----~~~~~~~~~~~~l~----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
++.++ ...++.+++.+.+. ..+....+.++.++|+.+.|+. +.+++|.+|||||||||||||||+.+|++
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 43222 12344555555442 2345677889999999999975 68999999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHH----hhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l----~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||||+++||...+..|...| .+++.|+|+||||++++.++||||++|++|+|.. .|+++++.
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~ev~ 226 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDEVY 226 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHHHh
Confidence 9999999999998876665555 4568899999999999999999999999999964 56766654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=340.24 Aligned_cols=205 Identities=20% Similarity=0.313 Sum_probs=170.6
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
.|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48999999999632 36999999999999999999999999999999999999999999987652
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|.+...+ +..++.+++... ... ...+.+.++++.+||.....++++.+|||||+|||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQL-FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhcc-chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 14789999753333 234777776431 111 12346788999999963333456789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++.++..
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999998764 579999999999999999999999999997 5888887654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=329.32 Aligned_cols=190 Identities=30% Similarity=0.410 Sum_probs=159.7
Q ss_pred EEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 367 LQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 367 l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
|+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 57999999999999999999999999999999999999999999986541
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc--CCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE--YPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
..++|++|... +....++.+++... +... ..+.+.++++.+|+.... ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-NHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-hcChhhcCHHHHHHHHHHHHHcc
Confidence 24788888753 33445777765431 1111 234678899999998655 45668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999998765 569999999999997 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.96 Aligned_cols=203 Identities=25% Similarity=0.396 Sum_probs=175.5
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEe
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQF 435 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~ 435 (582)
+++++|++++|+ +..+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|...+. ..++|+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 589999999996 467999999999999999999999999999999999999999999987652 248899
Q ss_pred chhhhhhcCCcccHHHHHHh---cC--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIK---EY--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~---~~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+|... +....++.+++.. .+ +.. ..+++.++++.||+.+.. ++++..|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98753 4455678777642 11 111 235688899999998765 456789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||||+|||+.++..+.+.|+++ +.|||++||+++++.++||+|++|++|++. +.|+++++...
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 222 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAA 222 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHHh
Confidence 9999999999999999999887 579999999999999999999999999997 68999998654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=334.97 Aligned_cols=206 Identities=24% Similarity=0.316 Sum_probs=169.4
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------------- 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~------------- 430 (582)
.++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+..
T Consensus 4 ~~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 357999999999964 679999999999999999999999999999999999999999999775531
Q ss_pred -------eEEEechhhhhhcCCcccHHHHHHhc---CC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH
Q 007982 431 -------RIAQFHQHLAEKLDMDMSALQYMIKE---YP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 431 -------~~~~~~q~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 496 (582)
.++|++|.....+....++.+++... +. ......+.++++.+++.....++++.+|||||+|||+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 37888887643344444444443211 11 11234577889999996423345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999999988653 679999999999999999999999999997 478877764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=347.51 Aligned_cols=202 Identities=24% Similarity=0.324 Sum_probs=174.2
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|++ ..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++|+|.+.+. ..++|++
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 5899999999964 67999999999999999999999999999999999999999999987652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCC------CC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP------GN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|++. +.+..++.+++..... .. ..+++.++++.++|.+... +++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~~--l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHYA--LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-RYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCcc--cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9853 4556788887753211 11 2356888999999987654 45689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~-~~g~~~~i~~ 226 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE-QAGTPDQVWR 226 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999998888764 579999999999999999999999999997 4788888764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=336.02 Aligned_cols=206 Identities=22% Similarity=0.356 Sum_probs=171.5
Q ss_pred eEEEEEEEEEecC--------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------
Q 007982 366 VLQFVEVTFGYTP--------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------- 429 (582)
+|+++|+++.|++ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999963 357999999999999999999999999999999999999999999987542
Q ss_pred ------eeEEEechhhhhhcCCcccHHHHHHhc------CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH
Q 007982 430 ------LRIAQFHQHLAEKLDMDMSALQYMIKE------YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|.....+....++.+++... +.. ...+++.++++.+|+.....+.++.+|||||+|||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 148888887532344456776665311 111 1245678899999996333345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++..
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHcC
Confidence 99999999999999999999999999999988764 579999999999999999999999999997 5788887753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=337.69 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=174.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------e
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~ 430 (582)
+++|+++|+++.|++++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 468999999999964467999999999999999999999999999999999999999999987652 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|.+...+ +..++.+++... ++.. ..+.+.++++.+||.+.. ++++.+|||||+|||+|||||+.+|
T Consensus 83 ~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 83 SVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred hEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-hCCcccCCHHHHHHHHHHHHHHcCC
Confidence 3789888753222 345777776431 1111 235678899999998654 4667999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||++|||++++..+|||+++|++|+++ +.|+++++..
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999998888764 579999999999999999999999999996 5898888754
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=328.02 Aligned_cols=194 Identities=27% Similarity=0.378 Sum_probs=163.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~ 431 (582)
+|+++|+++.|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4789999999943467999999999999999999999999999999999999999999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc--CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE--YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|... +.+..++.+++... ... . ..+.+.++++.+|+.+... +++.+|||||||||+||||++.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCC
Confidence 788888753 33456777766431 111 1 1335678999999986544 5668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999988865 5799999999999999999999999999863
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=335.26 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=173.3
Q ss_pred CCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e
Q 007982 362 LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L 430 (582)
Q Consensus 362 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~ 430 (582)
..+++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 7 ~~~~~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 7 HSDTTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CCCceEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 45678999999999964 67999999999999999999999999999999999999999999987652 1
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcC----------CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEY----------PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
.++|++|... +....++.+++.... .....+++.++++.+++.+.. ++++.+|||||+|||+|||||
T Consensus 86 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 86 KVAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA-HRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred heEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-cCCcccCCHHHHHHHHHHHHH
Confidence 4788888743 334557777764321 011234678899999997644 456689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++|+++ ..|+.+++..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELMR 237 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhcC
Confidence 9999999999999999999999999888764 579999999999999999999999999996 5788877654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=327.59 Aligned_cols=197 Identities=22% Similarity=0.337 Sum_probs=161.7
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++|+++.|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999643 27999999999999999999999999999999999999999999986542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc---C-CCCh---HHH-HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE---Y-PGNE---EEK-MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~-~~~~---~~~-~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|.....+....++.+++... . .... ... +.++++.+++.....+.++.+|||||+|||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 247888887632344456777765321 1 1111 122 247889999953233456789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999998765 5799999999999999999999999999863
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=332.24 Aligned_cols=203 Identities=26% Similarity=0.473 Sum_probs=170.2
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
++|+++|+++.|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|.+.....
T Consensus 3 ~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 58999999999964 57999999999999999999999999999999999999999999998876679999998532212
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
+..++.+++.. .+....+++.++++.+|+.+.. ++++.+|||||+|||+|||||+.+|++|||||||+|||+.++..+
T Consensus 82 l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 82 LPLTVNRFLRL-RPGTKKEDILPALKRVQAGHLI-DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred cChhHHHHHhc-cccccHHHHHHHHHHcCChHHH-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 22345554422 2222345678899999998654 456789999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 525 AEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 525 ~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+.|.++ +.|||+||||++++..+||+|++|++ +++ ..|+++++..
T Consensus 160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~~ 209 (251)
T PRK09544 160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVSL 209 (251)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHhC
Confidence 9988654 67999999999999999999999965 665 5788877643
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=348.38 Aligned_cols=203 Identities=22% Similarity=0.305 Sum_probs=175.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC--cEEEEcCc---------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD--GMVRRHNH---------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~--G~i~~~~~---------~~~~~ 434 (582)
-|+++|++++|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|...+. ..++|
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 3789999999964 679999999999999999999999999999999999999999 99987652 35899
Q ss_pred echhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|++. +.+.+|+.+++.... +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999864 556778888875321 111 2356889999999987655 4568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW-----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++...
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~-~~g~~~~~~~~ 229 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA-AHGEPQALYDA 229 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhC
Confidence 99999999999999999887653 569999999999999999999999999997 47898888654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=329.31 Aligned_cols=198 Identities=24% Similarity=0.306 Sum_probs=165.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEcCc------------
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL-----VPLDGMVRRHNH------------ 429 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~-----~p~~G~i~~~~~------------ 429 (582)
|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+.
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 478999999964 57999999999999999999999999999999999999 999999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc---CC--CC--hHHHHHHHHHhcCCCCccccCC-CCCCChhHHHHHHHHHHH
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE---YP--GN--EEEKMRAAIGRFGLTGKAQVMP-MKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~l~~~gl~~~~~~~~-~~~LSgGqkqrv~lAral 500 (582)
..++|++|... +. ..|+.+++... .. .. ..+++.++++.+|+.......+ +.+|||||||||+|||||
T Consensus 80 ~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 80 RRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred HhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHH
Confidence 14788888753 22 56777776421 11 11 2356788999999986544443 589999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++..+||++++|++|+++. .|++++
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 226 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPTEQ 226 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCccc
Confidence 99999999999999999999999999998763 589999999999999999999999999974 666543
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=325.40 Aligned_cols=192 Identities=24% Similarity=0.327 Sum_probs=162.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 478999999964 57999999999999999999999999999999999999999999987542 24788888
Q ss_pred hhhhhcCCcccHHHHHHhc--CCC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKE--YPG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++... ... ...+++.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-DRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 753 33456777765421 111 1234577889999997654 45678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99999999999999998764 5799999999999999999999999999974
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=343.98 Aligned_cols=208 Identities=27% Similarity=0.415 Sum_probs=169.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HHHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 150 (582)
.|+++||+|.|++..+++++||+|+.||+++|+||||||||||||+|+|++.++.|.+. +++... .+......++
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~----i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL----IDGRDVTDLPPEKRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEECCCCChhHCCEE
Confidence 69999999999987699999999999999999999999999999999999999876542 222111 0111112232
Q ss_pred --cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|.. +..++++++...+. ..+.++.++++.++.+.+++++ +++++|.+|||||||||||||||+.+|+++||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 2222 23455666665554 4567888999999999999975 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+|+||...+..+...|++ ++.|+|+||||..++..++|||++|++|+|.. .|++.+..
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely 222 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELY 222 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHh
Confidence 999999999988887777655 57899999999999999999999999999975 46665543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=327.40 Aligned_cols=200 Identities=25% Similarity=0.334 Sum_probs=167.0
Q ss_pred EEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEe
Q 007982 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQF 435 (582)
Q Consensus 367 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~ 435 (582)
|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4789999999642 57999999999999999999999999999999999999999999987653 237888
Q ss_pred chhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+|... +....++.+++... . +.. ..+++.++++.+|+.... +.++.+|||||+|||+|||||+.+|++|||
T Consensus 81 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-NKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-hChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88742 33355677665421 1 111 234678899999997554 356789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
||||++||+.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++ ..|+.+++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 219 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQEL 219 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE-ecCCHHHc
Confidence 9999999999999999999876 369999999999999999999999999997 46776653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=336.89 Aligned_cols=205 Identities=25% Similarity=0.410 Sum_probs=171.7
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
++|+++|++++|++...+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 46899999999964456999999999999999999999999999999999999999999987552 1478
Q ss_pred EechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|.+...+ +..++.+++... .... ..+.+.++++.+|+..... +++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-RVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 8888753222 245777766421 1111 1345788999999986544 556899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||+|||+.++..+.+.|+++ +.|||++|||++++.++||+|++|++|+++ +.|+++++..
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 227 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIFL 227 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHhc
Confidence 999999999999999999988764 579999999999999999999999999997 5789888754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=341.72 Aligned_cols=208 Identities=24% Similarity=0.342 Sum_probs=164.5
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH--HHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK--LEKEAEI 148 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 148 (582)
.+|+++||+|+|+++.+|+|+||+|++|+++||+||||||||||+++|+|+.+|+.|.+. +++.... .......
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~----i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS----LCGEPVPSRARHARQR 81 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----ECCEecccchHHHHhc
Confidence 479999999999999999999999999999999999999999999999999988866432 2221110 0111222
Q ss_pred hcc--ccCC---CcchHHHHH--HHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGA--QEDG---GGEQLERVY--ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++ +... .....+++. ..+...+..+...++.++++.+++.. ..+++++.|||||||||+||+||+.+|++|
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 332 2211 122333332 22223344455677889999999975 568899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||||+|||+.++.++.++|+++ +.|||++||+++++..+||||++|++|+++ +.|+++++
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l 225 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHAL 225 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999876 579999999999999999999999999997 45776654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=329.39 Aligned_cols=202 Identities=26% Similarity=0.351 Sum_probs=169.1
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999643 17999999999999999999999999999999999999999999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc---CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE---YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
..++|++|... +....++.+++... .... ....+.++++.+|+..... +++.+|||||+|||+|||||+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHHHHHHHHHhc
Confidence 23778888753 33446777765421 1111 2346788999999976544 5668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV-EEGTVEEVF 229 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999999999998764 569999999999999999999999999997 578877654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=339.52 Aligned_cols=207 Identities=26% Similarity=0.392 Sum_probs=164.0
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH--HHHHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK--LEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 148 (582)
.++++||+++|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+..|+.|.+ .+.+.... .......
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i----~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI----LVLGYDVVKEPAKVRRR 79 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE----EEcCEeCccCHHHHHhh
Confidence 688999999999 6999999999999999999999999999999999999999876543 22221110 1112223
Q ss_pred hccccC-----CCcchHH--HHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGAQED-----GGGEQLE--RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~~~~-----~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++.+. +..+..+ .++..+........++++.++++.+||.+ ..++++++||+||||||+||+||+.+|++|
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 332211 1122222 23334444333455678999999999986 347889999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc---C-cEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF---D-RILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~---~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||||+||||.++..+.++|+++ + .|||++||.++++..+||+|++|++|+++.+ |+.+++
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~-g~~~~l 224 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE-GTPEEL 224 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe-CCHHHH
Confidence 999999999999999999999876 3 6999999999999999999999999999865 566654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=328.73 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=168.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
.|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 5899999999964 57999999999999999999999999999999999999999999987652 24788
Q ss_pred echhhhhhcCCcccHHHHHHhc--CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE--YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
++|... +. ..++.+++... .......++.++++.+|+.....++++.+|||||+|||+||||++.+|++||||||
T Consensus 82 ~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 82 VFQQPH--LF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EecCch--hc-hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 888753 22 24677765421 11123456788999999963333456789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|++.++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 220 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE-YAKTYDFF 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE-eCCHHHHh
Confidence 9999999999999988764 6799999999999999999999999999974 67776654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=344.61 Aligned_cols=207 Identities=20% Similarity=0.271 Sum_probs=171.1
Q ss_pred CeEEEEEEEEEec---CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEcCc--------
Q 007982 365 PVLQFVEVTFGYT---PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV----PLDGMVRRHNH-------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~----p~~G~i~~~~~-------- 429 (582)
++|+++|++++|+ +...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 4799999999995 23469999999999999999999999999999999999996 58999987652
Q ss_pred -------eeEEEechhhhhhcCCcccHHHHHHhc-----CC-----C--ChHHHHHHHHHhcCCCCc--cccCCCCCCCh
Q 007982 430 -------LRIAQFHQHLAEKLDMDMSALQYMIKE-----YP-----G--NEEEKMRAAIGRFGLTGK--AQVMPMKNLSD 488 (582)
Q Consensus 430 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~-----~--~~~~~~~~~l~~~gl~~~--~~~~~~~~LSg 488 (582)
..++|++|.....+.+..++.+.+... +. . ...+++.++|+.+||.+. ..+..+.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 148899998754455556665554321 10 1 123568899999999752 12345589999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEc
Q 007982 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564 (582)
Q Consensus 489 Gqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 564 (582)
||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||+|++|++|+|++ .
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-T 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999999988764 6799999999999999999999999999975 7
Q ss_pred CCHHHHHH
Q 007982 565 GDIMDFKL 572 (582)
Q Consensus 565 g~~~~~~~ 572 (582)
|+.+++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 88877754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=332.10 Aligned_cols=202 Identities=23% Similarity=0.389 Sum_probs=169.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------- 429 (582)
+|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 6899999999964 57999999999999999999999999999999999999999999976431
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc---CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE---YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
..++|++|... +....++.+++... ... . ..+.+.++++.+|+.... +.++.+|||||+|||+||||
T Consensus 82 ~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-hCChhhCChHHHHHHHHHHH
Confidence 24788888743 33446777765321 111 1 234578889999997654 45678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++..
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 233 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALFA 233 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999999999988764 579999999999999999999999999996 5788877653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=329.38 Aligned_cols=203 Identities=25% Similarity=0.405 Sum_probs=171.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..+
T Consensus 1 ~~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 46899999999964 57999999999999999999999999999999999999999999987652 137
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCC--------------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYP--------------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
+|++|... +....++.+++..... .....++.++++.+|+.... +.++.+|||||+|||+|||
T Consensus 80 ~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKPT--VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-DRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEeccccc--cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-cCChhhCCHHHHHHHHHHH
Confidence 78887642 3345677776543110 01234678899999998654 4567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+.+++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHhc
Confidence 999999999999999999999999999999876 469999999999999999999999999997 5888888754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=323.54 Aligned_cols=192 Identities=24% Similarity=0.364 Sum_probs=164.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++|++++|++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 478999999964 67999999999999999999999999999999999999999999988653 24788888
Q ss_pred hhhhhcCCcccHHHHHHhc--CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 438 HLAEKLDMDMSALQYMIKE--YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
... +....++.+++... ......+++.++++.+++..... +++.+|||||||||+||||++.+|++|||||||++
T Consensus 80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 743 44456777776432 11223556888999999976544 56689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 516 LDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999988764 5799999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=330.22 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=168.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEEe
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQF 435 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~~ 435 (582)
|+++|++++|++.+.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999964256999999999999999999999999999999999999999999987542 247888
Q ss_pred chhhhhhcCCcccHHHHHHhc--CCC----ChHHHHHHHHHhcCCCC-ccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKE--YPG----NEEEKMRAAIGRFGLTG-KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
+|... +....|+.+++... +.. ...+.+.++++.+|+.. ....+++.+|||||+|||+|||||+.+|++||
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccCcc--ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88753 33456777776421 111 12346788999999985 23345678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+++.
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 224 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEIL 224 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999988774 5789999999999999999999999999974 68877764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=342.80 Aligned_cols=206 Identities=21% Similarity=0.296 Sum_probs=170.3
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC----CCCcEEEEcCc---------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV----PLDGMVRRHNH--------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~----p~~G~i~~~~~--------- 429 (582)
+|+++|+++.|+.. ..+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 369999999999999999999999999999999999997 48999987652
Q ss_pred ------eeEEEechhhhhhcCCcccHHHHHHh----c--CC-CChHHHHHHHHHhcCCCCc--cccCCCCCCChhHHHHH
Q 007982 430 ------LRIAQFHQHLAEKLDMDMSALQYMIK----E--YP-GNEEEKMRAAIGRFGLTGK--AQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 ------~~~~~~~q~~~~~~~~~~~~~~~~~~----~--~~-~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqkqrv 494 (582)
..++|++|.....+++..++.+.+.. . .. ....+++.++|+.+||.+. ..+..+.+|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 14899999865445555555443321 1 11 1124568899999999742 22345689999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||++++.++||||++|.+|+|++ .|+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive-~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999988764 5799999999999999999999999999986 7888777
Q ss_pred HH
Q 007982 571 KL 572 (582)
Q Consensus 571 ~~ 572 (582)
.+
T Consensus 242 ~~ 243 (326)
T PRK11022 242 FR 243 (326)
T ss_pred hh
Confidence 54
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=308.43 Aligned_cols=204 Identities=23% Similarity=0.325 Sum_probs=164.8
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-ee---chHHHHHHHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-IS---CDEERLKLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~---~~~~~~~~~~~~ 146 (582)
||+++||+|.|+ ++.+|+|+||+|++||++.|+||||||||||+|+|.+...|+.|.+... .. .....+.+ ..
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~--LR 78 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF--LR 78 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch--hh
Confidence 589999999996 4569999999999999999999999999999999999988886653210 00 11111111 12
Q ss_pred HHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 EILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
..++ +|+. ....+++++...+. +.+..++++++.++|+.+||.+. .+..|.+|||||||||+||||++.+|+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k-~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK-ARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh-hhcCccccCchHHHHHHHHHHHccCCC
Confidence 2233 2222 22345666655544 45678899999999999999864 578999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEc
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT 278 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~ 278 (582)
+||.||||.+|||.....+++++.++ |.||||.|||.+.++.+--|++.|++|+++.+.
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999998887665 789999999999999999999999999997643
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=331.26 Aligned_cols=206 Identities=22% Similarity=0.290 Sum_probs=168.4
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--------------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-------------- 430 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-------------- 430 (582)
++|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 57999999999964 578999999999999999999999999999999999999999999875421
Q ss_pred ------eEEEechhhhhhcCCcccHHHHHHh---cCC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHH
Q 007982 431 ------RIAQFHQHLAEKLDMDMSALQYMIK---EYP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 431 ------~~~~~~q~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 497 (582)
.++|++|.....+....++.+++.. .+. ....+.+.++++.+|+.....++++..|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 2678887753223333444444321 011 112356788999999964333456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++..
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~~ 238 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVLD 238 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999999999888653 579999999999999999999999999997 4788777753
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=330.05 Aligned_cols=202 Identities=25% Similarity=0.393 Sum_probs=170.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------eeE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~~ 432 (582)
+|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 ~l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 4789999999964 67999999999999999999999999999999999999999999987542 147
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---CCC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---YPG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
+|++|... +....++.+++... ... ...+.+.++++.+|+.... ++++.+|||||+|||+||||++.+|+
T Consensus 80 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-hcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 88888753 33456777765421 111 1234578899999997654 45668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+..++.+
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 225 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLIK 225 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHhc
Confidence 99999999999999999999998765 579999999999999999999999999997 5788887754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=326.98 Aligned_cols=195 Identities=27% Similarity=0.377 Sum_probs=163.7
Q ss_pred CCeEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------
Q 007982 364 PPVLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------- 429 (582)
.|+|+++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4689999999999642 46999999999999999999999999999999999999999999987641
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
..++|++|... +....++.+++... ... ...+++.++++.+|+.+... +++.+|||||||||+||||
T Consensus 83 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-HRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHH
Confidence 24788888753 33445777766431 111 12346788999999986554 4568999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
++.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ |++++|++|+++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99999999999999999999999999998764 56999999999999775 6999999999974
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=324.30 Aligned_cols=192 Identities=22% Similarity=0.395 Sum_probs=163.6
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------eeEEEechhh
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------LRIAQFHQHL 439 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------~~~~~~~q~~ 439 (582)
|+++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|..
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999996 467999999999999999999999999999999999999999999988753 2588898875
Q ss_pred hhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 440 AEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. +....++.+++... . .. ...+.+.++++.+|+..... +++.+|||||||||+|||||+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 G--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred c--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 33446777765321 1 11 12356788999999976544 566899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 514 NHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
+|||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|++..
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999999999999998875 5799999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=303.06 Aligned_cols=200 Identities=29% Similarity=0.408 Sum_probs=168.9
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce---------eEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL---------RIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~---------~~~~~~ 436 (582)
+|.+++|.|+|+. . --.++++|..||++||+||+||||||||++|+|+..|.+|.|..++.. .++.++
T Consensus 1 ~l~L~~V~~~y~~-~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYGH-L--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeCc-c--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 4678999999963 2 236889999999999999999999999999999999999999987642 244555
Q ss_pred hhhhhhcCCcccHHHHHHhcC-C-----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEY-P-----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|. .++...+++.+++.... | ..+++++..++.++||.++..+.| .+|||||||||+|||+|+++-+|||||
T Consensus 78 QE--nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QE--NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hc--cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-cccCchHHHHHHHHHHHhccCCeEEec
Confidence 54 23555677777775432 2 225677999999999999877666 799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||++.|||.-+.++..++.+. +.|++||||.++.+.+++++++++++|+|. |.|+.+++..
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~ 219 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS 219 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence 999999999999988887765 569999999999999999999999999995 7999888764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=343.25 Aligned_cols=208 Identities=27% Similarity=0.436 Sum_probs=164.7
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------H
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~ 141 (582)
||+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++..+ .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~----i~G~~i~~~~~~~ 76 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI----VDGQDLTTLSNSE 76 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----ECCEECCcCCHHH
Confidence 5899999999952 4799999999999999999999999999999999999998866432 222111 1
Q ss_pred HHHHHHHhcc--ccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
+......+++ |... .....+++...+. ..+....++++.++++.+||.+ ..++++.+|||||||||+|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHH
Confidence 1111222332 2211 1234444433322 3445566778999999999975 57899999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..++++|+++ +.|||+|||+++.+..+||+|++|++|+++ ..|+.+++.
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999999999998764 679999999999999999999999999997 457776654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=332.46 Aligned_cols=193 Identities=23% Similarity=0.293 Sum_probs=163.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEechhh
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQHL 439 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q~~ 439 (582)
+|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|..
T Consensus 1 ml~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 4789999999964 67999999999999999999999999999999999999999999987652 2478888875
Q ss_pred hhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 440 AEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. +....++.+++... .... ..+++.++++.+|+..... +++.+|||||||||+|||||+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 G--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred c--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 33446777765421 1111 2346788999999976544 566899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEe--CCeEEE
Q 007982 514 NHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCE--NQAVTR 562 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~--~G~i~~ 562 (582)
+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|+ +|+++.
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999999998775 5799999999999999999999998 599864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=367.04 Aligned_cols=206 Identities=27% Similarity=0.423 Sum_probs=177.3
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 443 (582)
+++|+++|++++|++++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....++|++|++. +
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--L 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--C
Confidence 56899999999996246799999999999999999999999999999999999999999998876667999999853 3
Q ss_pred CCcccHHHHHHhcC-----------------C-C------------------------ChHHHHHHHHHhcCCCCccccC
Q 007982 444 DMDMSALQYMIKEY-----------------P-G------------------------NEEEKMRAAIGRFGLTGKAQVM 481 (582)
Q Consensus 444 ~~~~~~~~~~~~~~-----------------~-~------------------------~~~~~~~~~l~~~gl~~~~~~~ 481 (582)
....|+.+++.... . . ....++.++++.+|+.. .++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WDA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--ccC
Confidence 33456655543110 0 0 01245677899999963 356
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 482 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
++.+|||||||||+|||+|+.+|++|||||||||||+.++..+.+.|+++++|||+||||++++..+||+|++|++|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 78999999999999999999999999999999999999999999999999889999999999999999999999999997
Q ss_pred EEcCCHHHHHHH
Q 007982 562 RWEGDIMDFKLH 573 (582)
Q Consensus 562 ~~~g~~~~~~~~ 573 (582)
.|.|++++|.+.
T Consensus 240 ~~~g~~~~~~~~ 251 (556)
T PRK11819 240 PWEGNYSSWLEQ 251 (556)
T ss_pred EecCCHHHHHHH
Confidence 789999988653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=377.86 Aligned_cols=185 Identities=21% Similarity=0.322 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh---cCCCceeecCCCCCCCHHHHHHHHHHHhhc---Cc
Q 007982 174 TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF---INPTILLLDEPTNHLDLEACVWLEETLKKF---DR 247 (582)
Q Consensus 174 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 247 (582)
....++ ++|+.+|+.....++++.+|||||+|||+||+||+ .+|++|||||||++||+.++..|+++|+++ +.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 445556 58899999643258899999999999999999998 699999999999999999999999998765 67
Q ss_pred EEEEEecCHHHHHhhcCeEEEEe------CCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q 007982 248 ILVVISHSQDFLNGVCTNIIHMQ------NKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 321 (582)
Q Consensus 248 tviivsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (582)
|||+|||+++++ .+||++++|. +|+++ ..|+++++... ...... + ++.+
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~~-~s~t~~----~---------l~~~--------- 918 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIHL-HTPTAK----A---------LRPY--------- 918 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHhc-cCchHH----H---------HHHH---------
Confidence 999999999999 7999999996 67886 46777665421 000000 0 0000
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcC
Q 007982 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGP 401 (582)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~ 401 (582)
+.... .. .... + .. ..+ +...++++.+.. ...|+|+||+|++|++++|+|+
T Consensus 919 ------------l~~~~--~~-~~~~---------~-~~--~~~-l~~~~i~i~~~~-~~~lk~isl~i~~gei~~itG~ 969 (1809)
T PRK00635 919 ------------LSSPQ--EL-PYLP---------D-PS--PKP-PVPADITIKNAY-QHNLKHIDLSLPRNALTAVTGP 969 (1809)
T ss_pred ------------hhccc--cc-cccc---------c-cc--ccc-cccceEEEeccc-cccccceeEEecCCcEEEEECC
Confidence 00000 00 0000 0 00 011 345566666542 3469999999999999999999
Q ss_pred CCCcHHHHHHHH
Q 007982 402 NGAGKSTLLKLM 413 (582)
Q Consensus 402 NGsGKSTLl~ll 413 (582)
||||||||+..+
T Consensus 970 nGsGKStL~~~~ 981 (1809)
T PRK00635 970 SASGKHSLVFDI 981 (1809)
T ss_pred CCCChhHHHHHH
Confidence 999999977654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=325.85 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=164.2
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeE
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~ 432 (582)
+|+++|+++.|++. .++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|...+. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 47899999999642 17999999999999999999999999999999999999999999987642 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+|++|... +....++.+++... + .. ...+++.++++.+|+.+.. ++++.+|||||||||+||||++.+|++
T Consensus 81 ~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDSTG--LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-DRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCCcc--cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-hhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 88888752 34446777765321 1 11 1235678899999997654 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999875 5799999999999999999999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=328.00 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=168.6
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~ 434 (582)
|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 478999999964 67999999999999999999999999999999999999999999987542 23788
Q ss_pred echhhhhhcCCcccHHHHHHhcC---CCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY---PGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|... +....++.+++.... ... ....+.++++.+|+.... +.++.+|||||||||+|||||+.+|++||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-KSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCcc--ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888753 334457777664311 111 234567899999998654 45678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||+|||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ +.|+.+++..
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 222 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIAA 222 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhhc
Confidence 99999999999999999988764 569999999999999999999999999996 5788877644
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=327.11 Aligned_cols=202 Identities=29% Similarity=0.439 Sum_probs=168.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEe
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQF 435 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~ 435 (582)
+|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999996 467999999999999999999999999999999999999999999987552 247888
Q ss_pred chhhhhhcCCcccHHHHHHhc--CCC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKE--YPG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+|... +.+..++.+++... ... ...+.+.++++.+|+..... +++.+|||||+|||+|||||+.+|++|||
T Consensus 80 ~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD-DKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88743 33456777765421 111 12345788999999976544 56689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||||+|||+.++..+.+.|.++ +.|||+||||++++. .||++++|++|+++ +.|+++++...
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~-~~~~~~~~~~~ 222 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVL-ADGAAAELRGA 222 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEE-EeCCHHHHHHH
Confidence 9999999999999999988764 569999999999997 49999999999996 47888777643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=346.67 Aligned_cols=204 Identities=25% Similarity=0.303 Sum_probs=175.4
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQ 434 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~ 434 (582)
.++|+++|+++.|++ ..+|+|+||+|.+|++++|+|||||||||||++|+|+.+|++|+|...+. ..++|
T Consensus 17 ~~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 568999999999964 67999999999999999999999999999999999999999999987653 25899
Q ss_pred echhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|+.. +.+..|+.+++.... +.. ..+++.++++.+||.+...+ .+.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-KPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999864 556778888875321 111 23567889999999876554 558999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||++||+.++..+.+.|. +.+.|+|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE-EEcCHHHHHh
Confidence 999999999999988876554 45789999999999999999999999999997 4788888765
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=325.34 Aligned_cols=192 Identities=25% Similarity=0.365 Sum_probs=160.6
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999642 46999999999999999999999999999999999999999999987541
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..++|++|... +....++.+++... .... ..+.+.++++.+|+.... ++++.+|||||||||+|||+|+
T Consensus 81 ~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHH--LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-NHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHh
Confidence 24788888742 33346777766421 1111 234578899999997654 4566899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||+|++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999998754 5799999999999965 8999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=370.12 Aligned_cols=204 Identities=26% Similarity=0.453 Sum_probs=172.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDM 445 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 445 (582)
+|.++||+++|++ +.+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|.... .
T Consensus 1 ~i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~-- 76 (638)
T PRK10636 1 MIVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-L-- 76 (638)
T ss_pred CEEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-C--
Confidence 5889999999964 67999999999999999999999999999999999999999999998877678888874211 0
Q ss_pred cccHHHHHH-----------------------------hc---CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHH
Q 007982 446 DMSALQYMI-----------------------------KE---YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492 (582)
Q Consensus 446 ~~~~~~~~~-----------------------------~~---~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 492 (582)
..+...++. .. ... ....++..+|..+||.....++++.+|||||||
T Consensus 77 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 77 PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 011111100 00 001 123567889999999743345688999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+||++|+.+|+||||||||||||+.++..|.+.|.++++|||+||||++++.++||+|++|++|+++.|.|++..|..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999976
Q ss_pred H
Q 007982 573 H 573 (582)
Q Consensus 573 ~ 573 (582)
.
T Consensus 237 ~ 237 (638)
T PRK10636 237 Q 237 (638)
T ss_pred H
Confidence 3
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=324.99 Aligned_cols=191 Identities=28% Similarity=0.425 Sum_probs=160.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------eeE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------LRI 432 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~~~ 432 (582)
|+++|+++.|++.+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964457999999999999999999999999999999999999999999987542 137
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+|++|... +....++.+++... . .. ...+++.++++.+|+..... +++.+|||||||||+|||||+.+|++
T Consensus 81 ~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 88888753 33445777765421 1 11 12346788999999976544 45689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999998875 57999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=328.22 Aligned_cols=207 Identities=25% Similarity=0.383 Sum_probs=160.2
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---H---HHHHH
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---K---LEKEA 146 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~---~~~~~ 146 (582)
|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... . .....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~----~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL----IDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEEccccChhhHHHHh
Confidence 5789999999988999999999999999999999999999999999999988765432 222110 0 01111
Q ss_pred HHhcc--ccCC---CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QEDG---GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~~---~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ +... .....+++..... .........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 22222 2111 1233333322111 1233445567889999999975 468899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence 999999999999999999999998764 679999999999999999999999999996 456666543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=324.51 Aligned_cols=198 Identities=24% Similarity=0.365 Sum_probs=154.0
Q ss_pred ceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHH
Q 007982 72 DIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~ 143 (582)
+|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... ...
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI----RFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEehhhcChhHHH
Confidence 4789999999964 479999999999999999999999999999999999998875543 2222111 011
Q ss_pred HHHHHhcc--ccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 144 KEAEILGA--QEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 144 ~~~~~~~~--~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
.....+++ +... .....+++..... .......+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11122322 2211 1123333322111 2233445667899999999974 5688999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999876 67999999999999999999999999974
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=325.33 Aligned_cols=200 Identities=25% Similarity=0.371 Sum_probs=166.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~ 434 (582)
|+++|++++|++ .++++++||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 478999999964 57999999999999999999999999999999999999999999987542 23788
Q ss_pred echhhhhhcCCcccHHHHHHhcC---C-CChHHHHHHHHHhc-CCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY---P-GNEEEKMRAAIGRF-GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
++|... +....++.+++.... . ......+.++++.+ ++.... ++++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGRR--IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERR-KQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred eccccc--cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhh-hCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888753 344567777664321 1 11234566778888 465543 456789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||+|||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ ..|+.+++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV-LEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE-EeCCHHHHh
Confidence 9999999999999999999765 579999999999999999999999999997 478777654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=334.71 Aligned_cols=203 Identities=25% Similarity=0.344 Sum_probs=167.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------eeE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~~ 432 (582)
||+++|++++|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 ml~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 5889999999964 57999999999999999999999999999999999999999999987542 137
Q ss_pred EEechhhhhhcCCcccHHHHHHh---cC--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIK---EY--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~---~~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+|++|.....+ +..++.+++.. .. ... ..+.+.++++.+|+.+.. ++++.+|||||||||+|||+|+.+|++
T Consensus 80 ~~v~q~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQI-FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhcc-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-cCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 88888753211 22344444321 11 111 124567889999997654 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++..
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 225 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL-THGAPGEVFA 225 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999998875 579999999999999999999999999997 4788877644
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=322.68 Aligned_cols=191 Identities=24% Similarity=0.351 Sum_probs=162.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEec
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFH 436 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~ 436 (582)
|+++|+++.|++ .++++|+||+|.+| +++|+||||||||||+++|+|+++|++|+|...+. ..++|++
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 478999999964 57999999999999 99999999999999999999999999999987652 2478888
Q ss_pred hhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +....++.+++... ... ...+.+.++++.+|+.+.. +.++.+|||||||||+|||||+.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-KKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-hCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8753 33445777765421 111 1235678899999997654 4566899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 511 EPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++..
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999876 5799999999999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=364.54 Aligned_cols=204 Identities=27% Similarity=0.457 Sum_probs=174.2
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDM 445 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 445 (582)
+|+++|++++|++ +++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+...++|++|.+. +..
T Consensus 1 ml~i~~ls~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~ 77 (530)
T PRK15064 1 MLSTANITMQFGA-KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFE 77 (530)
T ss_pred CEEEEEEEEEeCC-cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCC
Confidence 4789999999964 6799999999999999999999999999999999999999999999877667999998753 223
Q ss_pred cccHHHHHHhc----------------CC----------------------CChHHHHHHHHHhcCCCCccccCCCCCCC
Q 007982 446 DMSALQYMIKE----------------YP----------------------GNEEEKMRAAIGRFGLTGKAQVMPMKNLS 487 (582)
Q Consensus 446 ~~~~~~~~~~~----------------~~----------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 487 (582)
..++.+++... .+ .....++.++++.+|+.....++++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 34444443210 00 01134577899999997544445678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCH
Q 007982 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDI 567 (582)
Q Consensus 488 gGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 567 (582)
|||||||+|||+|+.+|+||||||||+|||+.++..+.+.|.+.+.|||+||||++++.++||+|++|++|+++.+.|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999997689999
Q ss_pred HHHHH
Q 007982 568 MDFKL 572 (582)
Q Consensus 568 ~~~~~ 572 (582)
++|.+
T Consensus 238 ~~~~~ 242 (530)
T PRK15064 238 DEYMT 242 (530)
T ss_pred HHHHH
Confidence 98864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=323.92 Aligned_cols=190 Identities=29% Similarity=0.431 Sum_probs=158.4
Q ss_pred EEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEEe
Q 007982 368 QFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQF 435 (582)
Q Consensus 368 ~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~~ 435 (582)
+++|+++.|++. +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642 57999999999999999999999999999999999999999999987652 247888
Q ss_pred chhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 436 HQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
+|..... .+..++.+++... . .. .....+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~~~-~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDDQ-FFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-DRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhhh-cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875311 2345777765421 1 11 1234678899999997554 456689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 510 DEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999998775 4699999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=329.74 Aligned_cols=204 Identities=25% Similarity=0.413 Sum_probs=170.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
+++|+++|+++.|++ .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 3 QPLLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred CceEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 458999999999964 67999999999999999999999999999999999999999999987652 12
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC------------------CCC---hHHHHHHHHHhcCCCCccccCCCCCCChhH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY------------------PGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQ 490 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~------------------~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 490 (582)
++|++|... +....++.+++.... ... ..+.+.++++.+|+.... ++++.+|||||
T Consensus 82 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~ 158 (255)
T PRK11300 82 VVRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHA-NRQAGNLAYGQ 158 (255)
T ss_pred eEEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhh-hCChhhCCHHH
Confidence 667777643 344567777654210 001 124577889999997654 45678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 491 RSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 491 kqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
||||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|+
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~ 237 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGT 237 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCC
Confidence 99999999999999999999999999999999999988754 579999999999999999999999999996 5888
Q ss_pred HHHHHH
Q 007982 567 IMDFKL 572 (582)
Q Consensus 567 ~~~~~~ 572 (582)
.+++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 887654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=335.30 Aligned_cols=205 Identities=24% Similarity=0.340 Sum_probs=169.0
Q ss_pred eEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------
Q 007982 366 VLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------ 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------ 429 (582)
.|+++|++++|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 47899999999642 36999999999999999999999999999999999999999999987542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|.....+. ..++.+++... . ... ..+.+.++++.+|+.....++++.+|||||||||+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 237888887522222 34777765421 1 111 1235678899999974333567789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV-LSGKPKDIFQ 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999998775 579999999999999999999999999997 4788877644
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=333.65 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=170.4
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
++|+++|+++.|++. ..+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 478999999999632 45999999999999999999999999999999999999999999987652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC-----CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY-----PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|.+.. ..+..++.+++.... .. ...+++.++++.+||.+... +++.+|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPDN-QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChHH-hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899987532 223457777764221 11 12356788999999986554 5668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++ ..||+|++|++|+++ .+|+++++..
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~-~~g~~~~~~~ 229 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE-STSTPRELFS 229 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE-EECCHHHHHc
Confidence 99999999999999999999988764 57999999999999 589999999999997 4788887654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=324.80 Aligned_cols=195 Identities=24% Similarity=0.313 Sum_probs=162.8
Q ss_pred CCeEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------
Q 007982 364 PPVLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------- 429 (582)
+++|+++|++++|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 4689999999999642 25999999999999999999999999999999999999999999986542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc--C---C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE--Y---P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
..++|++|.+. +....++.+++... + . ....+++.++++.+|+..... +++.+|||||+|||+||||
T Consensus 84 ~~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHH
Confidence 24788888753 33445677765421 1 1 112456788999999976544 4568999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++. .||++++|++|++++
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999999999999999999999999998654 579999999999985 599999999999863
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=330.93 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=171.1
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEcCc-----------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL---DGMVRRHNH----------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~---~G~i~~~~~----------- 429 (582)
+++|+++||++.|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 2 ~~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 2 QTIIRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred CcEEEEeeEEEEeCC-eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 368999999999964 67999999999999999999999999999999999999986 499976552
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhcC--------------CCChHHHHHHHHHhcCCCCccccCCCCCCChhH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKEY--------------PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQ 490 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 490 (582)
..++|++|... +....++.+++.... .....+++.++++.+|+.... ++++.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~ 157 (262)
T PRK09984 81 IRKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-HQRVSTLSGGQ 157 (262)
T ss_pred HHHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-hCCccccCHHH
Confidence 13688888753 334567777764211 111234678899999997544 45678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 491 RSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 491 kqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++. ++|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~ 236 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGS 236 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCC
Confidence 99999999999999999999999999999999999999875 469999999999999999999999999995 6899
Q ss_pred HHHHH
Q 007982 567 IMDFK 571 (582)
Q Consensus 567 ~~~~~ 571 (582)
++++.
T Consensus 237 ~~~~~ 241 (262)
T PRK09984 237 SQQFD 241 (262)
T ss_pred HHHhc
Confidence 98873
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=332.99 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=171.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------eeE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~~ 432 (582)
+|+++|++++|++...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|...+. ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 4789999999964457999999999999999999999999999999999999999999987542 137
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+|++|.+...+ +..++.+++... . .. ...+++.++++.+|+.+.. ++++.+|||||+|||+|||||+.+|++
T Consensus 81 ~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88888753222 235777766421 1 11 1234578899999998654 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 226 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII-KEGTPKEVFS 226 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999998875 579999999999999999999999999997 4788888754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=312.76 Aligned_cols=205 Identities=22% Similarity=0.302 Sum_probs=170.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC-----cEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD-----GMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~-----G~i~~~~~--------- 429 (582)
.+.++++|+++.|+ ++.+|+|||+.|.++.++||+||+|||||||||++..+..... |+|.+.+.
T Consensus 5 ~~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46799999999996 5679999999999999999999999999999999999988765 88877653
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhcC-----C-CChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKEY-----P-GNEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
.++|.++|.+. ++.+++++++.... . ..-.+.++..|....|-+. ..+.+...||||||||++|
T Consensus 84 ~~lRr~vGMVFQkPn---PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPN---PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCC---CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 35889999864 35588999886432 1 1123456777877776432 2234456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||||+.+|+|||||||||+|||-+...|.++|.++. -|||+|||+|..+.+++|+++++..|++++| |+.+.+...
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~iF~~ 238 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKIFTN 238 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhhhcC
Confidence 999999999999999999999999999999999874 5999999999999999999999999999985 666666554
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=339.81 Aligned_cols=209 Identities=20% Similarity=0.319 Sum_probs=173.8
Q ss_pred CCCeEEEEEEEEEecC---CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEcCc-------
Q 007982 363 PPPVLQFVEVTFGYTP---DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL---DGMVRRHNH------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~---~G~i~~~~~------- 429 (582)
..++|+++|+++.|+. ...+++||||+|.+||++||+|+||||||||+++|+|+++|. +|+|.+.+.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 4578999999999952 246999999999999999999999999999999999999996 999987652
Q ss_pred --------eeEEEechhhhhhcCCcccHHHHHHh---cCCC-C---hHHHHHHHHHhcCCCCcc--ccCCCCCCChhHHH
Q 007982 430 --------LRIAQFHQHLAEKLDMDMSALQYMIK---EYPG-N---EEEKMRAAIGRFGLTGKA--QVMPMKNLSDGQRS 492 (582)
Q Consensus 430 --------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~l~~~gl~~~~--~~~~~~~LSgGqkq 492 (582)
..++|++|+....+++..++.+++.. .... . ..+++.++|+.+||.+.. ....+.+|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 25899999975556666666654432 1111 1 235678899999997421 23455899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 568 (582)
||+|||||+.+|+|||+||||++||+.++..+.++|+++ +.|+|+||||++++.++||+|++|.+|+|++ .|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive-~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME-YGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence 999999999999999999999999999999999888764 6799999999999999999999999999975 78888
Q ss_pred HHHH
Q 007982 569 DFKL 572 (582)
Q Consensus 569 ~~~~ 572 (582)
++..
T Consensus 248 ~i~~ 251 (330)
T PRK09473 248 DVFY 251 (330)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=327.71 Aligned_cols=202 Identities=19% Similarity=0.290 Sum_probs=170.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~ 433 (582)
+|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 6899999999964 67999999999999999999999999999999999999999999987651 2478
Q ss_pred EechhhhhhcCCcccHHHHHHhcC---C----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY---P----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|++|... +....++.+++.... . ......+.++++.+|+.... +.++.+|||||+|||+||||++.+|++
T Consensus 82 ~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR-DSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHh-hcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8888753 334467777664321 1 11234578899999997644 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.+.++ +.|||++|||++++..+||++++|++|+++ ..|+++++..
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI-AHGTPTEILQ 226 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHhc
Confidence 9999999999999999888877653 679999999999999999999999999997 4888888754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=326.50 Aligned_cols=201 Identities=24% Similarity=0.327 Sum_probs=170.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------- 429 (582)
+|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 5889999999964 67999999999999999999999999999999999999999999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc----CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE----YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..++|++|... +....++.+++... .... ....+.++++.+|+..... +++.+|||||||||+||||++
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHh
Confidence 13788888753 34456777776421 1111 2345788899999976544 556899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+||++++|++|++. +.|+++++.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 999999999999999999999999998864 579999999999999999999999999996 588888764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=339.73 Aligned_cols=194 Identities=26% Similarity=0.358 Sum_probs=164.6
Q ss_pred EecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEechhhhhhcC
Q 007982 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFHQHLAEKLD 444 (582)
Q Consensus 375 ~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~~ 444 (582)
+|+ ++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++|++|... +.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~ 78 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--VD 78 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--CC
Confidence 564 467999999999999999999999999999999999999999999987652 24889988753 44
Q ss_pred CcccHHHHHHhc---CC--CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 007982 445 MDMSALQYMIKE---YP--GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518 (582)
Q Consensus 445 ~~~~~~~~~~~~---~~--~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 518 (582)
...|+.+++... +. .. ..+++.++++.+||.... ++++.+|||||||||+||+||+.+|++|||||||+|||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 556777776421 11 11 234678899999998654 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 519 ETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 519 ~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
.++..+.+.|+++ +.|||++|||++++.++||+|++|++|+++ +.|+++++...
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence 9999999998875 579999999999999999999999999997 58898887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=328.68 Aligned_cols=202 Identities=27% Similarity=0.374 Sum_probs=170.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
+|+++|++++|++ +.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 6899999999964 67999999999999999999999999999999999999999999987652 13788
Q ss_pred echhhhhhcCCcccHHHHHHhc-------CC---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE-------YP---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
++|... +....++.+++... +. ....+.+.++++.+|+.... +.++.+|||||+|||+||||++.+|
T Consensus 81 ~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-DRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-cCCcccCCHHHHHHHHHHHHHhcCC
Confidence 888743 33445677765431 11 11234678899999997654 4566899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|.++ +.|||++|||++++.++||++++|++|+++ +.|+.+++..
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 227 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVMT 227 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhcC
Confidence 999999999999999999999998764 579999999999999999999999999996 5788877643
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.77 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=170.5
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
+|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 6899999999964 67999999999999999999999999999999999999999999987652 23788
Q ss_pred echhhhhhcCCcccHHHHHHhcC-C-C----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc------c
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY-P-G----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY------R 502 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~------~ 502 (582)
++|... +.+..++.+++.... . . ...+.+.++++.+|+.... +..+.+|||||||||+|||||+ .
T Consensus 81 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-GRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-cCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 888753 334567887764321 1 1 1234578899999997654 4566899999999999999999 5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+.+++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHhC
Confidence 99999999999999999999999988764 569999999999999999999999999997 5788887654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.88 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=167.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~ 434 (582)
|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 478999999964 57999999999999999999999999999999999999999999987541 24788
Q ss_pred echhhhhhcCCcccHHHHHHhcC---CCChHHHHHHHHHhcC-CCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY---PGNEEEKMRAAIGRFG-LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
++|... +....++.+++.... .....+.+.++++.++ +.... +.++.+|||||+|||+|||||+.+|++||||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 80 VPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEML-GRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred eccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 888753 334557777664321 1112334577788886 44433 4567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||++||+.++..+.+.|.++ +.|||+||||++++..+||+|+++++|+++ ..|+.+++...
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~~~ 222 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV-ASGAGDELDED 222 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHcChH
Confidence 999999999999999998764 579999999999999999999999999996 57888877443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=341.51 Aligned_cols=209 Identities=22% Similarity=0.333 Sum_probs=163.7
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEI 148 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 148 (582)
.+|+++||+++|+++.+|+|+||+|++|+++||+||||||||||+++|+|+.+|+.|.+. +++... ........
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~----i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT----VLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE----ECCEECCcchHHHhcc
Confidence 379999999999999999999999999999999999999999999999999988866432 222111 00111122
Q ss_pred hcc--ccC---CCcchHHHHH--HHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGA--QED---GGGEQLERVY--ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~--~~~---~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++ +.. ......+++. ..+..........++.++++.+++.+ ..++++.+|||||||||+||+||+.+|++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 332 211 1122333332 22222333445567888999999975 568899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||||+|||+.++.++.++|+++ +.|||++||+++++..+||+|++|++|+++ +.|+.+++.
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~ 260 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALI 260 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999999999875 679999999999999999999999999997 457766543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=326.87 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=165.0
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEcCc------------eeE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p~~G~i~~~~~------------~~~ 432 (582)
|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|...+. ..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 478999999964 67999999999999999999999999999999999995 799999987652 126
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---CC--------C-C-hHHHHHHHHHhcCCCCccccCCCC-CCChhHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---YP--------G-N-EEEKMRAAIGRFGLTGKAQVMPMK-NLSDGQRSRVVFAW 498 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~~--------~-~-~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~lAr 498 (582)
+|++|.+. +....++.+++... .. . . ..+++.++++.+|+.....++++. +|||||||||+|||
T Consensus 80 ~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 77788753 23345555544211 00 0 1 134578899999997433344555 59999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+ ||++++|++|++. +.|+++++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAKE 234 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhcc
Confidence 999999999999999999999999999999876 57999999999999998 8999999999996 5888886654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=309.72 Aligned_cols=214 Identities=22% Similarity=0.348 Sum_probs=165.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC-CceeeeeechHHHH--------HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM-SSLEAVISCDEERL--------KL 142 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~-~~~~~~i~~~~~~~--------~~ 142 (582)
.++++||++.|+++.+|+|||+.|+++.+++||||||||||||||+++.+..... -.++|.+.+++.++ .+
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 6899999999999999999999999999999999999999999999986654322 22344444433322 23
Q ss_pred HHHHHHhccccCC-CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 143 EKEAEILGAQEDG-GGEQLERVYER--LEALDASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
++....+++.+.+ ....++++... +.+......++.+++.|....|= .+.+++.+..||||||||+.|||||+.
T Consensus 87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred HHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence 3333333322222 23445555433 33343466777788888776652 234577889999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+|+|||||||||+|||.+...++++|.+++ -|||+|||++..+.+++|++.++..|+++.| |+.++++.
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~iF~ 237 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKIFT 237 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhhhc
Confidence 999999999999999999999999998874 5999999999999999999999999999876 55555543
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=327.50 Aligned_cols=204 Identities=20% Similarity=0.259 Sum_probs=169.1
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
.+|+|+++|++++|++ +.+|+++||+|.+|++++|+||||||||||+++|+|++. |++|+|.+.+.
T Consensus 3 ~~~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 3 SPPKMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CCcEEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 3688999999999964 579999999999999999999999999999999999974 58999987541
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc--CC---C--ChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE--YP---G--NEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~--~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... +.. .++.+++... .. . ...+++.++++.+|+... ...+++.+|||||||||
T Consensus 82 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 82 VVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 24788888753 222 4777766421 11 1 123567888999998531 22456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|+++++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIF 236 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999999999876 469999999999999999999999999996 578888765
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=332.78 Aligned_cols=200 Identities=22% Similarity=0.270 Sum_probs=167.9
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------eeE
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRI 432 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~~ 432 (582)
.++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 26 ~~~~~~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQ-TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCC-ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 57799999964 67999999999999999999999999999999999999999999987542 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc--C---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE--Y---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
+|++|... +....++.+++... . .. ...+++.++++.+||.+... +++.+|||||||||+|||||+.+|++
T Consensus 105 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 88888753 33456777776431 1 11 12345788999999976544 56689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.+
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 250 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV-QVGTPEEILT 250 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999988765 579999999999999999999999999997 4788877654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=325.69 Aligned_cols=205 Identities=19% Similarity=0.272 Sum_probs=168.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC----CCcEEEEcCc---------ee
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP----LDGMVRRHNH---------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p----~~G~i~~~~~---------~~ 431 (582)
.+|+++|++++| + +++|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|...+. ..
T Consensus 3 ~~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 3 QQIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred cEEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 368999999999 3 5799999999999999999999999999999999999999 9999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHh---cC-CCChHHHHHHHHHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIK---EY-PGNEEEKMRAAIGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|.....+....++.+++.. .. .....+++.++++.+++... ..+.++.+|||||+|||+|||||+.+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 888888753223333344443321 11 12234578899999999752 2245678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|+.+++..
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 230 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLFN 230 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHhh
Confidence 99999999999999999999888764 579999999999999999999999999996 5788887754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=329.43 Aligned_cols=204 Identities=28% Similarity=0.385 Sum_probs=171.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..+|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 357999999999974 67999999999999999999999999999999999999999999987653 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc-CC---------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE-YP---------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|... +....++.+++... .+ ......+.++++.+|+.... ++++.+|||||||||+||||++.
T Consensus 84 ~~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 84 GLLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-DQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EEeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-cCCcccCChHHHHHHHHHHHHhc
Confidence 88888753 33345677766432 11 11234678899999997654 45678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+++++..
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 233 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIVT 233 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhh
Confidence 99999999999999999999999988764 568999999999999999999999999997 4788887654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=321.57 Aligned_cols=190 Identities=24% Similarity=0.394 Sum_probs=160.3
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------eeEE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LRIA 433 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~~~ 433 (582)
|+++|+++.|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999964 67999999999999999999999999999999999999999999987542 2367
Q ss_pred EechhhhhhcCCcccHHHHHHhc---CCC----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE---YPG----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|++|... +....++.+++... ... ...+++.++++.+|+.... ++++.+|||||+|||+|||||+.+|++
T Consensus 80 ~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-DAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-hhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 8888753 33446777765421 111 1234578889999997654 456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
|||||||+|||+.++..+.+.|+++ +.|||++|||++++.++||+|++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999998875 57999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=331.16 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=171.7
Q ss_pred CCeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 364 PPVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
.++|+++|+++.|++ .+++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 357999999999964 356999999999999999999999999999999999999999999987653 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|.+.. ..+..++.+++... .... ..+++.++++.+||..... +++.+|||||||||+|||||+.+|+
T Consensus 83 i~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 83 VGMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-REPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred eEEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899988632 23345777776431 1111 2345788999999987654 4568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||||+|||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+.+++..
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIFK 229 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHhc
Confidence 99999999999999999999998764 569999999999997 59999999999996 5788877654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=333.13 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=167.0
Q ss_pred CeEEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------
Q 007982 365 PVLQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------- 429 (582)
..|+++|++++|++. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 458999999999643 24999999999999999999999999999999999999999999976542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc--CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE--YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
..++|++|.+...+ +..++.+++... ... . ..+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhh-hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 13788888752212 234666655321 111 1 12456788999999533334667899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|+.+++.
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEIF 239 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999888764 579999999999999999999999999997 478877764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=324.41 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=169.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|...+. ..
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 3 KVMLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred ccEEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 358999999999964 67999999999999999999999999999999999999999999987652 13
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc--CCCC--hHHHHHHHHHhc-CCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE--YPGN--EEEKMRAAIGRF-GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
++|++|... +....++.+++... .... ..+.+.++++.+ ++.+.. ..++.+|||||+|||+|||||+.+|++
T Consensus 82 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~i 158 (237)
T PRK11614 82 VAIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERR-IQRAGTMSGGEQQMLAIGRALMSQPRL 158 (237)
T ss_pred EEEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHH-hCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 778888743 33345777776432 1111 233466677777 465443 346689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++ +.|++++...
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 226 (237)
T PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALLA 226 (237)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHhc
Confidence 9999999999999999999988764 579999999999999999999999999996 5889888754
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=325.03 Aligned_cols=201 Identities=22% Similarity=0.294 Sum_probs=168.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEcCc-----------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-----DGMVRRHNH----------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-----~G~i~~~~~----------- 429 (582)
+|+++|++++|++ ..+++|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 1 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 4789999999964 57999999999999999999999999999999999999998 999987542
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--CCC-----ChHHHHHHHHHhcCCC----CccccCCCCCCChhHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--YPG-----NEEEKMRAAIGRFGLT----GKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~gl~----~~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +.. .++.+++... ... ...+.+.++++.+|+. ... .+++.+|||||||||+|
T Consensus 80 ~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 80 LRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-HDSALGLSGGQQQRLCI 155 (247)
T ss_pred HHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-hCCcccCCHHHHHHHHH
Confidence 24788888753 333 6777766421 111 1234678899999997 433 45678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+.+++..
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 232 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIFT 232 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999999999999875 369999999999999999999999999996 5788887753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=329.36 Aligned_cols=205 Identities=21% Similarity=0.319 Sum_probs=169.0
Q ss_pred CeEEEEEEEEEecC--------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------
Q 007982 365 PVLQFVEVTFGYTP--------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------- 429 (582)
++|+++|+++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47899999999973 367999999999999999999999999999999999999999999987643
Q ss_pred -------eeEEEechhhhhhcCCcccHHHHHHh---cC---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHH
Q 007982 430 -------LRIAQFHQHLAEKLDMDMSALQYMIK---EY---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 -------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|.....+....++.+++.. .+ .. .....+.++++.+|+.......++.+|||||+|||+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 24788888753334344556555421 11 11 123467889999999643334567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+..+.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 239 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDK 239 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhc
Confidence 999999999999999999999999999998888754 579999999999999999999999999996 47777664
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=327.02 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=168.1
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------------
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------------- 429 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------------- 429 (582)
|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+.
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 478999999964 67999999999999999999999999999999999999999999976542
Q ss_pred -------eeEEEechhhhhhcCCcccHHHHHHhc------CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHH
Q 007982 430 -------LRIAQFHQHLAEKLDMDMSALQYMIKE------YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +....++.+++... ... ...+.+.++++.+|+..... .++.+|||||+|||+
T Consensus 80 ~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHH
Confidence 23778887642 33456777766431 111 12345788999999976544 456899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999999988764 579999999999999999999999999996 578887775
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
.
T Consensus 236 ~ 236 (252)
T TIGR03005 236 R 236 (252)
T ss_pred c
Confidence 3
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=320.99 Aligned_cols=199 Identities=28% Similarity=0.400 Sum_probs=154.2
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 151 (582)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++.... .......+++
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~----~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL----IDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE----ECCEEcCcCchhhccEEE
Confidence 5789999999988999999999999999999999999999999999999888765432 2221110 0000111221
Q ss_pred --ccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 152 --QED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 152 --~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+.. ......+++..... .........++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 111 11122333321111 1223344567889999999974 568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999764 6799999999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=322.21 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=169.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|++ . ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ~l~~~~l~~~~~~-~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHH-L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECC-c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 4789999999964 3 24999999999999999999999999999999999999999987653 2478888
Q ss_pred hhhhhhcCCcccHHHHHHhcC-CC-----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEY-PG-----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|... +....++.+++.... .. ...+++.++++.+|+.... ++++.+|||||+|||+||||++.+|++||||
T Consensus 78 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL-ARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred cccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8753 334467777764321 11 1245688899999997654 4566899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|++. +.|+.+++...
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~~ 220 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLSG 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 999999999999999988764 569999999999999999999999999996 58998887754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=343.58 Aligned_cols=188 Identities=26% Similarity=0.312 Sum_probs=159.9
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------eeEEEechhhhhhcCC
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRIAQFHQHLAEKLDM 445 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~~~~~~q~~~~~~~~ 445 (582)
.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|... +..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCC
Confidence 4899999999999999999999999999999999999999999987542 25889999753 445
Q ss_pred cccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 007982 446 DMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE 519 (582)
Q Consensus 446 ~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~ 519 (582)
..|+.+++... +.. ...+++.++++.+||.+... +++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 56887776532 111 12356788999999987554 456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 520 TIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 520 ~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~~ 254 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHHh
Confidence 999999988764 579999999999999999999999999996 4788877654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=330.00 Aligned_cols=203 Identities=21% Similarity=0.326 Sum_probs=168.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~ 433 (582)
+|+++|+++.|++.+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 4789999999964456999999999999999999999999999999999999999999977542 2378
Q ss_pred EechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|.+...+ ...++.+++... . .. ...+.+.++++.+|+..... .++..|||||+|||+|||||+.+|+||
T Consensus 81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 8888753222 345777766421 1 11 12345788899999976544 567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||+|||+.++..+.+.|+++ +.|||++|||++++ ..||+|++|++|+++ +.|+.+++..
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~~ 224 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIV-LEGEPENVLS 224 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEE-EECCHHHHhc
Confidence 999999999999999999998764 57999999999999 469999999999996 5788877644
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=341.40 Aligned_cols=208 Identities=23% Similarity=0.338 Sum_probs=166.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||++.|+++.+|+|+||+|++||+++|+|||||||||||++|+|+.+++.|.+ .+++..+. .......++
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I----~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI----FIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE----EECCEECCCCCHHHCCEE
Confidence 7999999999999999999999999999999999999999999999999999886643 22221110 000111222
Q ss_pred --cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|.. +.....+++...+. ..+..+..+++.++++.+|+.+ +.++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2221 12244555543332 3445566788999999999975 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~ 225 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELY 225 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999888654 6899999999999999999999999999975 56766543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=325.39 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=170.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~---------- 429 (582)
++|+++|++++|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 46899999999964 5799999999999999999999999999999999999974 6999987652
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhcC---C--CC---hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKEY---P--GN---EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~~---~--~~---~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +....++.+++.... . .. ..+.+.++++.+|+... ..+.++.+|||||||||+||
T Consensus 81 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 81 RRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred hccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 24788888753 334567777764211 1 11 13457889999998531 23456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|++. ..|+.+++..
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVFT 234 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHHc
Confidence 9999999999999999999999999999999875 478999999999999999999999999996 5788888753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=333.66 Aligned_cols=214 Identities=20% Similarity=0.337 Sum_probs=163.5
Q ss_pred ceEEeeeEEEECCe-----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeee-echHH-------
Q 007982 72 DIRIESLSVTFHGH-----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI-SCDEE------- 138 (582)
Q Consensus 72 ~i~v~nls~~y~~~-----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i-~~~~~------- 138 (582)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|.+...- .....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 599999999999999999999999999999999999988766542210 00000
Q ss_pred ---------------HHHHHHHHHHhc--cccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhc
Q 007982 139 ---------------RLKLEKEAEILG--AQEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAK 195 (582)
Q Consensus 139 ---------------~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~ 195 (582)
..........++ +|.+. .....+++..... ..+.....+++.++++.+||.....++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 000111122233 23211 1123333322221 234456677899999999996446789
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCC
Q 007982 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNK 272 (582)
Q Consensus 196 ~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G 272 (582)
++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998765 679999999999999999999999999
Q ss_pred eEEEEcCChhHHHH
Q 007982 273 QLKFYTGNFDQYVQ 286 (582)
Q Consensus 273 ~i~~~~g~~~~~~~ 286 (582)
+++ +.|+.+++..
T Consensus 242 ~i~-~~g~~~~~~~ 254 (305)
T PRK13651 242 KII-KDGDTYDILS 254 (305)
T ss_pred EEE-EECCHHHHhc
Confidence 997 4577666543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=360.61 Aligned_cols=206 Identities=29% Similarity=0.435 Sum_probs=175.6
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
.+|+++|++++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+...++|++|.+. +.
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LD 80 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--CC
Confidence 5799999999996346799999999999999999999999999999999999999999998876667999999863 33
Q ss_pred CcccHHHHHHhcC-------------------CCCh-----------------------HHHHHHHHHhcCCCCccccCC
Q 007982 445 MDMSALQYMIKEY-------------------PGNE-----------------------EEKMRAAIGRFGLTGKAQVMP 482 (582)
Q Consensus 445 ~~~~~~~~~~~~~-------------------~~~~-----------------------~~~~~~~l~~~gl~~~~~~~~ 482 (582)
...|+.+++.... +..+ ..++.++++.+|+.. . +++
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~ 158 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-DAD 158 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-cCc
Confidence 3456665543210 0010 134566788888853 2 467
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 483 ~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
+.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++|||+||||++++..+||+|++|++|+++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 238 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999999998899999999999999999999999999877
Q ss_pred EcCCHHHHHHHH
Q 007982 563 WEGDIMDFKLHL 574 (582)
Q Consensus 563 ~~g~~~~~~~~~ 574 (582)
+.|++++|.+..
T Consensus 239 ~~g~~~~~~~~~ 250 (552)
T TIGR03719 239 WEGNYSSWLEQK 250 (552)
T ss_pred ecCCHHHHHHHH
Confidence 899999987653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=326.68 Aligned_cols=201 Identities=29% Similarity=0.374 Sum_probs=170.3
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEEe
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQF 435 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~~ 435 (582)
|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 579999999964 67999999999999999999999999999999999999999999987652 137888
Q ss_pred chhhhhhcCCcccHHHHHHhcC---------CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKEY---------PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
+|.+. +....++.+++.... .. ...+++.++++.+|+.... +.++.+|||||+|||+||||++.+|+
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-DRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 88753 334567777764321 11 1234678899999997544 45678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||+|||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ +.|+.+++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 226 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVLT 226 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhhC
Confidence 99999999999999999999998876 579999999999999999999999999997 5788887644
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=316.19 Aligned_cols=210 Identities=25% Similarity=0.358 Sum_probs=167.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE- 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~- 147 (582)
.+++++|+++||+-.+++||||++++||+++||||||||||||+|+|+|+++|+.|.+ .+.+..+ ...+...
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v----~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV----IFRGRDITGLPPHRIARL 79 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE----EECCcccCCCCHHHHHhc
Confidence 5889999999999999999999999999999999999999999999999999986653 2222211 1111110
Q ss_pred Hhc--ccc---CCCcchHHHHHHHHH---------cC-----ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHH
Q 007982 148 ILG--AQE---DGGGEQLERVYERLE---------AL-----DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 148 ~~~--~~~---~~~~~~~~~~~~~l~---------~~-----~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 208 (582)
-+. +|. ....++++++.-... .. ...+..+++.++|+.+||.+ ..+.+..+||+|||+|+
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRRL 158 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCChhHhHHH
Confidence 011 121 122344555432211 01 23566788999999999985 57899999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
.|||||+.+|++||||||.+||.+.....+.++|+++ +.||++|.||++++.++||||+||+.|+++ ..|++++.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV 237 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEV 237 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHH
Confidence 9999999999999999999999999999999998765 479999999999999999999999999987 57999887
Q ss_pred HHh
Q 007982 285 VQT 287 (582)
Q Consensus 285 ~~~ 287 (582)
..+
T Consensus 238 ~~d 240 (250)
T COG0411 238 RNN 240 (250)
T ss_pred hcC
Confidence 654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=320.46 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=167.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------eeEEEechhh
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------LRIAQFHQHL 439 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------~~~~~~~q~~ 439 (582)
|+++|+++.|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|..
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 478999999964 67999999999999999999999999999999999999999999987653 2577888864
Q ss_pred hhhcCCcccHHHHHHhc--CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 007982 440 AEKLDMDMSALQYMIKE--YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD 517 (582)
. +....++.+++... .......++.++++.+|+.+... .++.+|||||+|||+||||++.+|++|||||||+|||
T Consensus 80 ~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 P--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred C--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 3 33445777765421 11223457889999999986544 5668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 518 IETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 518 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
+.++..+.+.|.++ +.|||++|||++++.++||+|++|++|++.. .|++.+
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecChhh
Confidence 99999999998765 4689999999999999999999999999974 676654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=334.75 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=161.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 149 (582)
+|+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ........+
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT----VLGEPVPSRARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEECcccHHHHhhcE
Confidence 69999999999998999999999999999999999999999999999999988765432 221110 001111223
Q ss_pred cc--ccCC---CcchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 GA--QEDG---GGEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
++ +... .....+++.. .....+......++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22 2211 1233333321 1222333444567788999999974 5688999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||+|||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|+++ +.|+.+++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 222 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHAL 222 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999876 679999999999999999999999999996 45666554
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=319.67 Aligned_cols=197 Identities=25% Similarity=0.430 Sum_probs=150.6
Q ss_pred EEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccc
Q 007982 74 RIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152 (582)
Q Consensus 74 ~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (582)
+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++...........+++.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI----LLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEEhhhHHhhcceEEE
Confidence 36899999987 889999999999999999999999999999999999998876543 2222211101111122221
Q ss_pred cCCC--cchHHHHHHHHHcC--ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC
Q 007982 153 EDGG--GEQLERVYERLEAL--DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228 (582)
Q Consensus 153 ~~~~--~~~~~~~~~~l~~~--~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~ 228 (582)
++.. ......+.+.+... .......++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 1111 00011222222110 01112357889999999975 5688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 229 HLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 229 ~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
+||+.++..+.++|+++ +.|+|++|||++++..+||++++|++|+++
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999776 679999999999999999999999999873
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=325.35 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=168.8
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~-------- 429 (582)
..++|+++|+++.|+ ++.+|+|+||+|.+|+++||+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 9 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 9 AQPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred cceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 356899999999996 46799999999999999999999999999999999999985 7999976442
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc---CCCC---hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE---YPGN---EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +. ..++.+++... .... ..+.+.++++.+|+.. ...+.++.+|||||+|||+
T Consensus 88 ~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 VVELRKNVGMVFQKPN--PF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHHhhhEEEEecCCc--cC-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 13778888743 22 25777766421 1111 1235778899998842 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ +.|+++++.+
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 242 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIFH 242 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999999999999999998875 479999999999999999999999999996 5788887753
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=319.95 Aligned_cols=203 Identities=22% Similarity=0.374 Sum_probs=157.3
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHhc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEILG 150 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 150 (582)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ........++
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~----~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT----VAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEecCcChHHHhhcEE
Confidence 5789999999999999999999999999999999999999999999999888765432 221111 0011112222
Q ss_pred c--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ +... .....+++... ...........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2111 11223333221 112333445667899999999974 56889999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCCh
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 281 (582)
||||++||+.++..+.++|.++ +.|||++|||++++..+||++++|++|+++. .|+.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 216 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTP 216 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCCh
Confidence 9999999999999999988764 6799999999999999999999999999974 3443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=329.80 Aligned_cols=204 Identities=22% Similarity=0.330 Sum_probs=169.0
Q ss_pred CeEEEEEEEEEecC-----CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTP-----DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-----~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------- 429 (582)
++|+++|++++|++ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 246999999999999999999999999999999999999999999987642
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc-----CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..++|++|.+...+. ..++.+++... ... ...+.+.++++.+||..... +++.+|||||+|||+|||+|+
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-HAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHH
Confidence 137888887532222 23555554321 111 12356788999999986554 566899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.. ||++++|++|+++ ..|+.+++..
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~~ 233 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIFK 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHhc
Confidence 999999999999999999999999998765 5699999999999976 9999999999997 4788888754
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=330.21 Aligned_cols=214 Identities=24% Similarity=0.332 Sum_probs=163.5
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechH--HHHHHH
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDE--ERLKLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~--~~~~~~ 143 (582)
||+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+... ..... ......
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999973 259999999999999999999999999999999999998876643210 01100 000111
Q ss_pred HHHHHhc--cccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh
Q 007982 144 KEAEILG--AQEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 144 ~~~~~~~--~~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
.....++ ++.+. .....+++..... ..+..+.+.++.++++.+|+.....++++.+|||||||||+|||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 1122233 22211 1123333322222 23345566788999999999644568899999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 233 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ 233 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence 999999999999999999999999998764 679999999999999999999999999997 4678777654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=338.78 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=169.2
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------e
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------L 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~ 430 (582)
||++ |++++|++ +. + |+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. .
T Consensus 1 ~l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4677 99999964 33 3 899999999999999999999999999999999999999976441 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
.++|++|... +.+..++.+++.........+++.++++.+|+.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDAR--LFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCcc--cCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4788888753 4456788888754332233457889999999986554 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++. ..|+++++...
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~i~~~ 219 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK-AFGPLEEVWAS 219 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE-EecCHHHHHhC
Confidence 999999999999999888764 579999999999999999999999999997 47888887653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=328.11 Aligned_cols=204 Identities=22% Similarity=0.262 Sum_probs=166.1
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEEEec
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIAQFH 436 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~~~~ 436 (582)
.+|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 36899999999964467999999999999999999999999999999999999999999987652 2488998
Q ss_pred hhhhhhcCCcccHHHHHHhc---------CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 437 QHLAEKLDMDMSALQYMIKE---------YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|..........++.+++... .+. ...+.+.++++.+|+.... ++++.+|||||+|||+|||||+.+|++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-HRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 87532111222333332110 011 1234577889999997654 456789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+++++ +|++. ..|+.+++.
T Consensus 164 lllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~-~~g~~~~~~ 229 (272)
T PRK15056 164 ILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL-ASGPTETTF 229 (272)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHhcc
Confidence 9999999999999999999999775 579999999999999999999877 89986 478887753
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=341.51 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=164.7
Q ss_pred ceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HHHHHHHHh
Q 007982 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 149 (582)
+|+++|++++| +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+++.|.+ .+++... ........+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I----~~~g~~i~~~~~~~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI----WIGGRVVNELEPADRDI 78 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE----EECCEECCCCCHHHCCE
Confidence 69999999999 77899999999999999999999999999999999999999886643 2222111 000011122
Q ss_pred c--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 G--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
+ +|.. +.....+++...+. ..+..+...++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2 2221 12234445433332 2344556678999999999974 6789999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~~ 223 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEVY 223 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHH
Confidence 99999999999999999888654 6799999999999999999999999999974 57766654
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=316.66 Aligned_cols=190 Identities=25% Similarity=0.367 Sum_probs=160.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++|++++|++ +. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++|++|
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 468999999964 33 3999999999999999999999999999999999999999987652 24789998
Q ss_pred hhhhhcCCcccHHHHHHhcCC------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKEYP------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++..... ....+++.++++.+|+..... .++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-RLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 753 3345678777643211 113456788999999986544 5668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++.
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 99999999999999998764 5799999999999999999999999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=340.12 Aligned_cols=208 Identities=25% Similarity=0.373 Sum_probs=166.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|+.|.+. +++.... .......++
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~----i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY----QGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE----ECCEECCCCCHHHCCEE
Confidence 69999999999999999999999999999999999999999999999999998866432 2221110 001111222
Q ss_pred --cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|.. +.....+++...+. ..+..+.+.++.++++.+||.+ +.++++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2222 12244455543332 2345566788999999999975 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+.++.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~g~~~~~~ 223 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-VGTPQEIY 223 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999888654 6899999999999999999999999999975 56666554
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=327.21 Aligned_cols=206 Identities=22% Similarity=0.345 Sum_probs=170.5
Q ss_pred CCCeEEEEEEEEEec-CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e
Q 007982 363 PPPVLQFVEVTFGYT-PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L 430 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~ 430 (582)
+.++|+++|+++.|+ +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. .
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence 356899999999996 2457999999999999999999999999999999999999999999987542 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|.... ..+..|+.+++... +... ....+.++++.+|+.+... +++.+|||||+|||+|||||+.+|
T Consensus 84 ~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 84 KIGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-KEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred ceEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CCcccCCHHHHHHHHHHHHHHcCC
Confidence 47888887532 22346777776431 1111 1235778899999986554 556899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||++|||++++. .||++++|++|++. ..|+.+++..
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 231 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI-AQGKPKEILN 231 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE-EecCHHHHhc
Confidence 999999999999999999999999875 369999999999995 79999999999996 4777776543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=323.60 Aligned_cols=204 Identities=25% Similarity=0.267 Sum_probs=168.4
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~---------- 429 (582)
++|+++|+++.|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 47999999999964 5799999999999999999999999999999999999987 4999987542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc--C-C---CC--hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE--Y-P---GN--EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~-~---~~--~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +....++.+++... . . .. ....+.++++.+|+... ....++.+|||||||||+
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 24778888743 33445777766421 1 1 11 12456788999998531 234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI-EVGPTRKVFE 237 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999999999999999999999876 479999999999999999999999999997 4788887753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=323.64 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=169.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~--------- 429 (582)
.++|+++|+++.|++ ..+|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 5 ~~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 468999999999964 5799999999999999999999999999999999999997 4899986542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc---CC--CC--hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE---YP--GN--EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... + +..++.+++... .. .. ..+.+.++++.+++.. ...++++.+|||||||||+
T Consensus 84 ~~~~~~i~~v~q~~~--~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPN--P-FLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeeccc--c-ccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 23788888753 2 236777766421 11 11 2345778888888731 1224567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+..++..
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 238 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE-EESSTDELFF 238 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999999999999999999999876 469999999999999999999999999997 4788888754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=312.10 Aligned_cols=207 Identities=25% Similarity=0.417 Sum_probs=181.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------eeEEEechh
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------LRIAQFHQH 438 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------~~~~~~~q~ 438 (582)
.|++++|+++|+ ++.+++|+||+|++|++.|++|||||||||.+|+|.|++.|++|+|.+.+. .+|||+|..
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 589999999996 578999999999999999999999999999999999999999999999874 368999887
Q ss_pred hhhhcCCcccHHHHHHh-----cCCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 439 LAEKLDMDMSALQYMIK-----EYPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 439 ~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
. .+...+++.+.+.. .++.. ...++..+|+++++.+.. .+++.+||-|++|++.|..+++++|++||||||
T Consensus 81 R--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~-~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 R--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKK-TKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred h--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccc-cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 4 46677888776532 23332 245688999999998765 467899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~ 577 (582)
+|||||.+.+.|.+++.++ |.|||++||.|+-++++||++++|+.|+.+ .+|+..+.+....++
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~~Gkk 224 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRSFGKK 224 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHhcCCc
Confidence 9999999999999987664 789999999999999999999999999986 699999998865553
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=329.39 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=162.3
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+++.|.+. +++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~i~~~~~~ 77 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT----IGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE----ECCEECcccccc
Confidence 3899999999974 5699999999999999999999999999999999999988766432 222111
Q ss_pred -HHHHHHHHhc--cccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 141 -KLEKEAEILG--AQEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 141 -~~~~~~~~~~--~~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
........++ ++.+. .....+++..... ..+......++.++++.+||.....++++.+|||||||||+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 1111122233 22211 1122233322111 2344455678899999999974556889999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++|++|+++ +.|+++++.
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999999988764 679999999999999999999999999997 467776654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=339.60 Aligned_cols=193 Identities=22% Similarity=0.283 Sum_probs=164.1
Q ss_pred EecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC---------------ceeEEEechhh
Q 007982 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN---------------HLRIAQFHQHL 439 (582)
Q Consensus 375 ~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~---------------~~~~~~~~q~~ 439 (582)
.|+ ++.+++|+||+|.+||+++|+|||||||||||++|+|+++|++|+|...+ ...++|++|.+
T Consensus 2 ~~~-~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTG-GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccC-CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 354 46799999999999999999999999999999999999999999998765 23589999985
Q ss_pred hhhcCCcccHHHHHHhc--C---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 440 AEKLDMDMSALQYMIKE--Y---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. +.+..|+.+++... + .. ...+++.++++.+||..... +++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~--l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 A--LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred c--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3 55567888876532 1 11 12456889999999986554 456899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 514 NHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++||+.++..+.+.+.++ +.|||+||||++++.++||+|++|++|+++ ..|+++++..
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv-~~g~~~ei~~ 219 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV-QVGTPDEILR 219 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-eeCCHHHHHh
Confidence 999999999999988654 679999999999999999999999999997 4788887754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=324.79 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=168.3
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
+.++|+++|++++|++ ..+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 18 ~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeCC-ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 4578999999999964 679999999999999999999999999999999999864 78999976541
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc--C-CC-C---hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE--Y-PG-N---EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~-~~-~---~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... +. ..++.+++... . .. . ..+.+.+++..+++.. ...+.++.+|||||+|||
T Consensus 97 ~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPN--PF-PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCc--cC-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 24788888753 22 23777766422 1 11 1 1244677888888842 123456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ +.|+.+++..
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 252 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIFT 252 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999999876 469999999999999999999999999996 5788877654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=323.29 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=168.9
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
+.++|+++|+++.|++ .++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|...+.
T Consensus 10 ~~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 10 APSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CCceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 4678999999999964 579999999999999999999999999999999999986 58999976541
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc---CCCC----hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE---YPGN----EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... +. ..++.+++... .... ..+++.++++.+++.. ...+.++.+|||||+|||
T Consensus 89 ~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 89 IALLRAKVGMVFQKPT--PF-PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred hHHHhcceEEEecCCc--cC-cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 24788888753 22 25777766421 1111 1345788999999842 122456689999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++..
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 244 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI-EFGNTDTIFT 244 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999999876 469999999999999999999999999997 4788877653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=323.91 Aligned_cols=205 Identities=20% Similarity=0.256 Sum_probs=169.3
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~-------- 429 (582)
..++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 16 ~~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 4568999999999964 6799999999999999999999999999999999999975 8999987542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhcC-------CCC-hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKEY-------PGN-EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSR 493 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqr 493 (582)
..++|++|... +.. .++.+++.... ... ..+++.++++.+|+... ....++.+||||||||
T Consensus 95 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 95 VVELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred hHHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23788888753 222 36777664211 111 13457889999999531 2235678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKMF 250 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999999999876 469999999999999999999999999997 578888775
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
.
T Consensus 251 ~ 251 (267)
T PRK14235 251 T 251 (267)
T ss_pred h
Confidence 3
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=306.60 Aligned_cols=204 Identities=21% Similarity=0.327 Sum_probs=174.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
+.|.++|+.++|. ++.++++|||+|++||++||.|||||||||.+.++.|+.+|++|.|..++. .-+
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4689999999996 478999999999999999999999999999999999999999999987642 348
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC---C---CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY---P---GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~---~---~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
+|++|..+ +.-.+|+.++++... . .. ...++.++|+.|+|.+.. +.+..+||||||+|+.|||||+.+|
T Consensus 82 gYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-DSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-cCcccccccchHHHHHHHHHHhcCC
Confidence 99999864 445678888775321 1 11 223467999999998765 4677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNE---WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+++|||||++|+||-+...+.+++.. .+.+|++.-|+..+...+|||.+++.+|+|. ++|+++++.+.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~n 229 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVNN 229 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhcC
Confidence 99999999999999988777776654 4679999999999999999999999999996 69999998764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=361.51 Aligned_cols=204 Identities=26% Similarity=0.469 Sum_probs=170.0
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
++|+++|++++|++ +.+|+|+||+|.+|+++||+|||||||||||++|+|+++|++|+|.+.+...+++++|.....
T Consensus 2 ~~l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~-- 78 (635)
T PRK11147 2 SLISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRN-- 78 (635)
T ss_pred cEEEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCC--
Confidence 37999999999964 679999999999999999999999999999999999999999999987655567766542110
Q ss_pred CcccHHHH------------------------------HH------h---cCC-CChHHHHHHHHHhcCCCCccccCCCC
Q 007982 445 MDMSALQY------------------------------MI------K---EYP-GNEEEKMRAAIGRFGLTGKAQVMPMK 484 (582)
Q Consensus 445 ~~~~~~~~------------------------------~~------~---~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~ 484 (582)
...++.++ +. . ... .....++.++++.+|+.. ++++.
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~ 155 (635)
T PRK11147 79 VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALS 155 (635)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchh
Confidence 00011110 00 0 000 112456788999999962 46789
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEc
Q 007982 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564 (582)
Q Consensus 485 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 564 (582)
+|||||||||+|||+|+.+|+||||||||||||+.++..|.+.|.++++|||+||||++++..+||+|++|++|+++.|.
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~ 235 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYP 235 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999998889
Q ss_pred CCHHHHHHHH
Q 007982 565 GDIMDFKLHL 574 (582)
Q Consensus 565 g~~~~~~~~~ 574 (582)
|++.+|.+..
T Consensus 236 g~~~~~~~~~ 245 (635)
T PRK11147 236 GNYDQYLLEK 245 (635)
T ss_pred CCHHHHHHHH
Confidence 9999987643
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=318.19 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=161.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEEe
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQF 435 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~~ 435 (582)
|+++|+++.|++.+.+++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 789999999964456999999999999999999999999999999999999999999987642 247888
Q ss_pred chhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCC-----------CCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL-----------TGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
+|... + +..++.+++...........+.++++.+++ .... ..++.+|||||||||+|||+|+.+|
T Consensus 83 ~q~~~--~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 83 LQDTF--L-FSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred cCCch--h-hhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 88753 2 223777776533222223344444444443 3222 2346899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|..+ +.|||+||||++++. .||++++|++|++. +.|+.+++..
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~-~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKII-EEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEE-EeCCHHHHHh
Confidence 999999999999999999999999876 478999999999996 59999999999997 4788877754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=305.29 Aligned_cols=205 Identities=24% Similarity=0.376 Sum_probs=175.7
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
++|+++|++..|+. ..+|++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.+.+. ..+
T Consensus 2 ~mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 68999999999964 68999999999999999999999999999999999999999999998763 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc-CCCC---hHH-HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE-YPGN---EEE-KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
+|++|-- .+...+|+.+++.-. +... ... .++++.+.|-.-....+++.++|||||||.++|||||+.+|++|
T Consensus 81 ~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 8898874 466789999998643 2211 111 26677788763333445678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcC----ceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEWD----GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~~----~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||||||.||-|.-...|.+.|+++. .||++|-++..++.+++||.+||++|+|+ ++|+.+++...
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~~ 227 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLAD 227 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhcC
Confidence 9999999999999999999887753 39999999999999999999999999996 79999999876
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=322.34 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=157.2
Q ss_pred eEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---H---HHHH
Q 007982 73 IRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---K---LEKE 145 (582)
Q Consensus 73 i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~---~~~~ 145 (582)
|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... . ....
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV----LIDGTDINKLKGKALRQL 76 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE----EECCEeccccCHhHHHHH
Confidence 478999999987 889999999999999999999999999999999999988775543 2221111 0 1111
Q ss_pred HHHhcc--ccCC---CcchHHHHHHHHH----------cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 146 AEILGA--QEDG---GGEQLERVYERLE----------ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 146 ~~~~~~--~~~~---~~~~~~~~~~~l~----------~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
...+++ +... .....+++..... .........++.++++.+|+.. ..++++.+|||||||||+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHH
Confidence 122222 2111 1222333321110 0111233467888999999964 5688999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+++++
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAEL 232 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHh
Confidence 99999999999999999999999999999998764 6799999999999999999999999999974 5666554
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=330.65 Aligned_cols=207 Identities=25% Similarity=0.416 Sum_probs=163.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 149 (582)
.|+++|++++|+++.+|+|+||+|++|+++||+||||||||||+++|+|+.+++.|.+. +++... ........+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~----i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEEcccChHHHHhce
Confidence 48999999999999999999999999999999999999999999999999988866432 222111 001111223
Q ss_pred cc--ccCC---CcchHHHHH--HHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 GA--QEDG---GGEQLERVY--ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
++ +... .....+++. ..+...+......++.++++.+|+.+ ..++++..|||||||||+|||||+.+|++||
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 32 2111 112333332 12222344455667899999999975 4689999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||+|||+.++.++.+.|+++ +.|||++||+++++..+||||++|++|+++ +.|+.+++
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999887 579999999999999999999999999997 56777654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=328.60 Aligned_cols=209 Identities=21% Similarity=0.301 Sum_probs=161.7
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT----IAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE----ECCEECcccccc
Confidence 4889999999974 4699999999999999999999999999999999999998866432 222111
Q ss_pred -HHHHHHHHhc--cccC----CCcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 141 -KLEKEAEILG--AQED----GGGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 141 -~~~~~~~~~~--~~~~----~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
........++ ++.. ......+++.... ..........++.++++.+|+.....++++.+|||||||||+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 0111112222 2221 0112233332111 12334455677899999999963456889999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF 233 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999999999998865 579999999999999999999999999996 457766554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=338.82 Aligned_cols=208 Identities=27% Similarity=0.385 Sum_probs=165.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC--CceeeeeechHHHH-HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM--SSLEAVISCDEERL-KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~--~~~~~~i~~~~~~~-~~~~~~~~ 148 (582)
.|+++||+++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+.+++. |.+ .+++... ........
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i----~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI----AIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE----EECCEECCCCCHHHCC
Confidence 5899999999999899999999999999999999999999999999999999886 543 2222111 00001112
Q ss_pred hc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
++ +|.. +.....+++...+. ..+......++.++++.+||.+ +.++++.+|||||||||+|||||+.+|++|
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22 2221 12234444433332 2345566778999999999975 578999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc-----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF-----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~-----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||||++||+..+.++.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~ 227 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALY 227 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999988653 5799999999999999999999999999974 57776654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=322.37 Aligned_cols=207 Identities=24% Similarity=0.364 Sum_probs=158.2
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~ 144 (582)
+|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ....
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL----LEGTDITKLRGKKLRK 76 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE----ECCEEhhhCCHHHHHH
Confidence 478999999998 78899999999999999999999999999999999999988765432 221111 0111
Q ss_pred HHHHhccccCC-----CcchHHHHHHHHH----------cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHH
Q 007982 145 EAEILGAQEDG-----GGEQLERVYERLE----------ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 145 ~~~~~~~~~~~-----~~~~~~~~~~~l~----------~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 209 (582)
....+++.++. .....+++..... .........++.++++.+|+.. ..++++.+|||||||||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHH
Confidence 11223221111 1122222221100 0111233567889999999964 568899999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 999999999999999999999999999999998765 579999999999999999999999999997 45666553
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=322.58 Aligned_cols=213 Identities=25% Similarity=0.370 Sum_probs=164.8
Q ss_pred eEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCCCceeeeeechHHHH-HHHH-H
Q 007982 73 IRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-SDMSSLEAVISCDEERL-KLEK-E 145 (582)
Q Consensus 73 i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-~~~~~~~~~i~~~~~~~-~~~~-~ 145 (582)
|+|+||+..|.. ..+++||||+|++||++||||+|||||||+.++|.++.+ +......|.+.+++..+ .+.. .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 689999999953 479999999999999999999999999999999999988 43333445555544422 1111 1
Q ss_pred H-----HHhc--cccCCC-----cchHHHHHHHHH---cC-ChhHHHHHHHHHHHhCCCChh--hhhccCCCCChhHHHH
Q 007982 146 A-----EILG--AQEDGG-----GEQLERVYERLE---AL-DASTAEKRAAEILYGLGFNKT--MQAKKTRDFSGGWRMR 207 (582)
Q Consensus 146 ~-----~~~~--~~~~~~-----~~~~~~~~~~l~---~~-~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqR 207 (582)
. ..++ +|++.. ...-..+.+.+. .. ...+..+++.++|+.+||++. ..+.+|++||||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 1 1122 233211 111112222222 22 345678899999999999854 6789999999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
|.||.||+.+|++||.||||++||...+.+++++|+++ +.++|+||||+..+.++||||+||..|+|+. .|+.++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~~ 240 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVEE 240 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHHH
Confidence 99999999999999999999999999999999988754 6799999999999999999999999999985 577666
Q ss_pred HHH
Q 007982 284 YVQ 286 (582)
Q Consensus 284 ~~~ 286 (582)
++.
T Consensus 241 i~~ 243 (316)
T COG0444 241 IFK 243 (316)
T ss_pred Hhc
Confidence 553
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=328.77 Aligned_cols=210 Identities=23% Similarity=0.363 Sum_probs=163.1
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~ 141 (582)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|.+ .+++... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI----IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE----EECCEECCCcCcc
Confidence 3899999999974 469999999999999999999999999999999999998876643 2222111 0
Q ss_pred HHHHHHHhc--cccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCC-hhhhhccCCCCChhHHHHHHHHH
Q 007982 142 LEKEAEILG--AQEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFN-KTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 142 ~~~~~~~~~--~~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
.......++ ++.+. .....+++..... .+...+...++.++++.+||. ....++++.+|||||||||+|||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 011112232 22211 1233333332211 234555667889999999996 13568899999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++..
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 234 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVFK 234 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999998754 6799999999999999999999999999974 577776653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=318.24 Aligned_cols=203 Identities=26% Similarity=0.394 Sum_probs=153.9
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCCCceeeeeechHHHHH-----H
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE-----ASDMSSLEAVISCDEERLK-----L 142 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~-----~~~~~~~~~~i~~~~~~~~-----~ 142 (582)
|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+. +++.|.+ .+++.... .
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i----~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV----LLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE----EECCEEhhhcchHH
Confidence 57899999999889999999999999999999999999999999999998 6665543 22221110 1
Q ss_pred HHHHHHhccccCCC----cchHHHHHHHHH--cCCh-hHHHHHHHHHHHhCCCChhhhhcc--CCCCChhHHHHHHHHHH
Q 007982 143 EKEAEILGAQEDGG----GEQLERVYERLE--ALDA-STAEKRAAEILYGLGFNKTMQAKK--TRDFSGGWRMRIALARA 213 (582)
Q Consensus 143 ~~~~~~~~~~~~~~----~~~~~~~~~~l~--~~~~-~~~~~~~~~~l~~lgl~~~~~~~~--~~~LSGGqrqRv~LAra 213 (582)
......+++.++.. ....+++..... .... ...+.++.++++.+|+.+. .+++ +.+|||||||||+||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 77 LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-VKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-HhccCCcccCCHHHHHHHHHHHH
Confidence 11122232211111 122233221111 1111 2245678899999999753 4455 59999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCCh
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 281 (582)
|+.+|++|||||||++||+.++.++.++|+++. .|||++|||++++..+||++++|++|+++.+ |+.
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~ 224 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF-GPT 224 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe-cCc
Confidence 999999999999999999999999999998763 5999999999999999999999999999743 443
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=321.25 Aligned_cols=207 Identities=23% Similarity=0.363 Sum_probs=174.0
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-C----CCcEEEEcCc--------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-P----LDGMVRRHNH-------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p----~~G~i~~~~~-------- 429 (582)
+|+++||+..|... ..+++||||+|.+||++||||.|||||||+.+.|.|+++ | .+|+|.+.+.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999642 369999999999999999999999999999999999997 4 5688877653
Q ss_pred -------eeEEEechhhhhhcCCcccHHHHHHh----cCCC--C--hHHHHHHHHHhcCCCCc--cccCCCCCCChhHHH
Q 007982 430 -------LRIAQFHQHLAEKLDMDMSALQYMIK----EYPG--N--EEEKMRAAIGRFGLTGK--AQVMPMKNLSDGQRS 492 (582)
Q Consensus 430 -------~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~~--~--~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqkq 492 (582)
..+++++|++...+++-.++-..+.. .... . ..+++.++|+.+||.+. ..+..+.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 25899999988888877766544432 1111 1 24578899999999864 233445899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 568 (582)
||+||.||+.+|+|||.||||.+||...+..+.++|+++ +.++|+||||+..+.++||||+||..|+|++ .|+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHH
Confidence 999999999999999999999999999999998888764 6799999999999999999999999999987 78888
Q ss_pred HHHHH
Q 007982 569 DFKLH 573 (582)
Q Consensus 569 ~~~~~ 573 (582)
++++.
T Consensus 240 ~i~~~ 244 (316)
T COG0444 240 EIFKN 244 (316)
T ss_pred HHhcC
Confidence 87653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=352.91 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=175.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++|++ +.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+. ..
T Consensus 9 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 468999999999964 67999999999999999999999999999999999999999999987652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCC--CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
++|++|... +....++.+++..... ....+++.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||
T Consensus 88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-DSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-cCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 789998753 4455788887654321 11245688899999998654 456789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLST 229 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcCH
Confidence 9999999999999999998765 579999999999999999999999999997 5888887753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=324.11 Aligned_cols=201 Identities=20% Similarity=0.323 Sum_probs=155.6
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..|+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++.... .....++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i----~~~g~~~~--~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----LAGTAPLA--EAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE----EECCEEHH--HhhCceE
Confidence 36999999999998899999999999999999999999999999999999998876543 22221111 1111122
Q ss_pred c--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC
Q 007982 151 A--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228 (582)
Q Consensus 151 ~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~ 228 (582)
+ +..... ....+.+.+..........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 85 ~v~q~~~l~-~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~ 162 (257)
T PRK11247 85 LMFQDARLL-PWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162 (257)
T ss_pred EEecCccCC-CCCcHHHHHHhcccchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1 221111 11122222221001123457889999999975 4688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCC
Q 007982 229 HLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280 (582)
Q Consensus 229 ~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 280 (582)
+||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .++
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~-~~~ 217 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL-DLT 217 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecc
Confidence 99999999999988654 6799999999999999999999999999964 344
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=318.30 Aligned_cols=201 Identities=26% Similarity=0.399 Sum_probs=161.6
Q ss_pred EEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++|+++.|++ +.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 356999999999999999999999999999999999999999999987652 24889
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHH---------HHHHhc--CCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR---------AAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|... + +..++.+++...........+. +++..+ ++.... ..++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~--~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENV--L-FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIV-GEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCch--h-ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchh-hcCCCcCCHHHHHHHHHHHHHhhC
Confidence 998853 2 2457777764322111122222 233333 443333 346689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .||++++|++|+++ +.|+++++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHhc
Confidence 9999999999999999999999999876 469999999999995 69999999999997 57888877553
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=318.81 Aligned_cols=196 Identities=28% Similarity=0.448 Sum_probs=151.0
Q ss_pred eEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH------H
Q 007982 73 IRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK------L 142 (582)
Q Consensus 73 i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~------~ 142 (582)
|+++||+++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++.... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i----~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV----RVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE----EECCEehhhcchhHH
Confidence 578999999986 789999999999999999999999999999999999998876543 22221110 0
Q ss_pred HH-HHHHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 143 EK-EAEILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 143 ~~-~~~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
.. ....+++ +... .....+++.... ........+.++.++++.+|+.. ..++++.+|||||||||+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHH
Confidence 00 1112222 1111 112333332211 12222334567889999999975 45889999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++. +||++++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999998765 579999999999997 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=313.03 Aligned_cols=198 Identities=22% Similarity=0.424 Sum_probs=155.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc-
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA- 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 151 (582)
|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|. +.+++..... .....+++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~----i~~~g~~~~~-~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE----VLFDGKPLDI-AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE----EEECCCchhH-HHHccEEEe
Confidence 57899999999889999999999999999999999999999999999998887554 3333322211 11112221
Q ss_pred -ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 152 -QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 152 -~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+... .....+++... ..........+.+.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1111 11233333211 112233445667889999999974 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 226 PTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999999765 5799999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=316.61 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=152.7
Q ss_pred ceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHH-HHHHHHHHHH
Q 007982 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEE-RLKLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~-~~~~~~~~~~ 148 (582)
+|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+... ..+... ..........
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 47899999999 46789999999999999999999999999999999999988876543210 011000 0001111122
Q ss_pred hcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++ +... .....+++.... ........+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 222 1111 112233332211 12233444567889999999974 567899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
||||||++||+.++.++.++|+++ +.|+|+||||++++..+||++++|++|+
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999765 6799999999999999999999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=321.24 Aligned_cols=207 Identities=26% Similarity=0.367 Sum_probs=158.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
.|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++.... .......++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI----LFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEECCcCCccccceE
Confidence 4899999999999899999999999999999999999999999999999988875543 22211100 000011122
Q ss_pred c--ccCC---CcchHHHHHHHHH--cC----ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 151 A--QEDG---GGEQLERVYERLE--AL----DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~--~~----~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
+ +.+. .....+++..... .. .......++.++++.+|+.. ..++++.+|||||||||+|||||+.+|+
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1 2111 1223333322111 11 22334456889999999964 5688999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 224 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEV 224 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 99999999999999999999998764 5799999999999999999999999999964 5666554
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=325.99 Aligned_cols=213 Identities=21% Similarity=0.247 Sum_probs=161.9
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHH-HHHHHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEE-RLKLEKEAEI 148 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~-~~~~~~~~~~ 148 (582)
.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+... ..+... ..........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 37999999999999999999999999999999999999999999999999998876543211 011000 0001111122
Q ss_pred hcc--ccCC---CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 149 LGA--QEDG---GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
+++ +... .....+++...+. ..+....+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 221 2211 1133333322221 1233334567888999999974 56889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999998765 579999999999999999999999999997 456666554
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=338.34 Aligned_cols=209 Identities=26% Similarity=0.396 Sum_probs=165.4
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHh
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEIL 149 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 149 (582)
.+|+++|++++|+++.+|+++||+|++|++++|+|||||||||||++|+|+.+++.|.+ .+++.... .......+
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I----~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI----MLDGQDITHVPAENRHV 88 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE----EECCEECCCCCHHHCCE
Confidence 36999999999999999999999999999999999999999999999999999876543 22221110 00011122
Q ss_pred c--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 G--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
+ +|.. +.....+++...+. ..+......++.++++.+||.+ +.++++.+|||||||||+|||||+.+|++||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2 2222 12244455543332 2344455678899999999974 6789999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~i~ 233 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ-DGTPREIY 233 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999988654 6899999999999999999999999999974 46666554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=333.98 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=161.8
Q ss_pred ceEEeeeEEEEC----CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------H
Q 007982 72 DIRIESLSVTFH----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y~----~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~ 141 (582)
||+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~----~~g~~i~~~~~~~ 76 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL----VDGQDLTALSEKE 76 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE----ECCEECCcCCHHH
Confidence 488999999997 46899999999999999999999999999999999999988766432 221110 1
Q ss_pred HHHHHHHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
.......+++ +... .....+++.... ..........++.++++.+|+.+ ..++++.+|||||||||+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHH
Confidence 1111122332 2211 123334432222 22334455677899999999974 56889999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~~ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEVF 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999999999998765 5799999999999999999999999999974 56655543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=313.07 Aligned_cols=193 Identities=27% Similarity=0.393 Sum_probs=162.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
++++|+++.|+. .+.|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 468999999962 468999999999999999999999999999999999999999987653 24788888
Q ss_pred hhhhhcCCcccHHHHHHhcC-C-----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKEY-P-----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++.... . ....+++.++++.+|+.... ++++.+|||||+|||+||||++.+|++|||||
T Consensus 78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-DRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 753 444567777764211 1 11345678899999997654 45668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
||++||+.++..+.+.|.++ +.|||+||||.+++..+||++++|++|++.. .|+
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~-~~~ 212 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV-VSD 212 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE-ecC
Confidence 99999999999999988764 5699999999999999999999999999974 443
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=316.20 Aligned_cols=195 Identities=29% Similarity=0.426 Sum_probs=150.5
Q ss_pred EEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 74 RIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 74 ~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL----VDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE----ECCEEcccCCHHHHHhh
Confidence 36899999987 7899999999999999999999999999999999999988766432 211110 01111122
Q ss_pred hcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 149 LGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 149 ~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
+++ +.. ......+++..... .........++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 222 211 11122333322111 1233344567889999999974 56889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999765 5699999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=322.74 Aligned_cols=205 Identities=21% Similarity=0.225 Sum_probs=168.0
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
++++|+++|++++|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 10 ~~~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3568999999999964 679999999999999999999999999999999999987 68999987542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhcC-----CCChHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKEY-----PGNEEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +.. .++.+++.... .....+.+.++++.+++.. ...+.++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 14788888753 222 47777764211 1112345677888888742 12345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeC-----------CeEEEE
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCEN-----------QAVTRW 563 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~-----------G~i~~~ 563 (582)
||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|++ |+++ .
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-~ 244 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-E 244 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-E
Confidence 99999999999999999999999999999999876 46899999999999999999999996 5565 4
Q ss_pred cCCHHHHHH
Q 007982 564 EGDIMDFKL 572 (582)
Q Consensus 564 ~g~~~~~~~ 572 (582)
+|++.++.+
T Consensus 245 ~~~~~~~~~ 253 (269)
T PRK14259 245 FNETKKIFN 253 (269)
T ss_pred eCCHHHHHh
Confidence 788888754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=291.11 Aligned_cols=192 Identities=28% Similarity=0.372 Sum_probs=164.9
Q ss_pred eEEEEEEEEEecC---CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTP---DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++++++..+. ...+|++|+|.|.+||.+|||||+||||||||-+++|+..|++|+|+..++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 7889999887753 246999999999999999999999999999999999999999999987553
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhcC------CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKEY------PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
.++|+++|.|. +-++++.++++.-.. .......++.+|+++||.....+.| .+|||||||||+||||++
T Consensus 86 R~~~vGfVFQSF~--Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSFH--LIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEeee--ccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-cccCchHHHHHHHHHHhc
Confidence 36899999875 556778888764211 1223456899999999998877666 799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
..|+||+.||||.+||.++-+.+.+++-. .+.|+|+||||..++. -|+|++.|.+|++.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~ 225 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA-RCDRQLRLRSGRLV 225 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-hhhheeeeecceec
Confidence 99999999999999999999988888744 4679999999999985 59999999999985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=336.82 Aligned_cols=208 Identities=25% Similarity=0.376 Sum_probs=163.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++|++++|+++.+|+|+||+|++||+++|+|||||||||||++|+|+.+++.|.+. +++.... .......++
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~----i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR----FHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEECCCCCHHHCCEE
Confidence 48999999999998999999999999999999999999999999999999988766432 2221110 000111222
Q ss_pred --cccC---CCcchHHHHHHHHH------cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 151 --AQED---GGGEQLERVYERLE------ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~------~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
+|.. +.....+++...+. ..+.....+++.++++.++|.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2221 11233444433222 1234455678999999999974 5789999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i~ 225 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQVW 225 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999888654 6799999999999999999999999999974 57766654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=314.90 Aligned_cols=192 Identities=28% Similarity=0.403 Sum_probs=159.8
Q ss_pred EEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++|+++.|++. +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 6899999999642 56999999999999999999999999999999999999999999987652 24788
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHccCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~~p 504 (582)
++|... +. ..++.+++...........+.++++.+++.+..... ++.+|||||||||+||||++.+|
T Consensus 83 ~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 83 VPQDVT--LF-YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred eCCCCc--cc-cchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 888753 22 247777764322222344567788888886543322 24699999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
++|||||||+|||+.++..+.+.|+++. .|||+||||++++ ++||++++|++|+++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 9999999999999999999999998863 6999999999987 6999999999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=339.21 Aligned_cols=208 Identities=22% Similarity=0.354 Sum_probs=163.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
.|+++|++++|+++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|+.|.+. +++.... .......++
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~----~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF----IGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE----ECCEECCCCCHhHCCEE
Confidence 58999999999998999999999999999999999999999999999999988766432 2211110 000011222
Q ss_pred --cccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|... .....+++...+. .........++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22211 1234444433222 2334455678999999999974 57899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~~~i~ 222 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999998888654 6799999999999999999999999999974 46666543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=325.41 Aligned_cols=210 Identities=23% Similarity=0.390 Sum_probs=162.2
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~----~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT----VDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE----ECCEECcccccc
Confidence 3899999999964 3699999999999999999999999999999999999988766432 222111
Q ss_pred -HHHHHHHHhc--cccCC-C---cchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 141 -KLEKEAEILG--AQEDG-G---GEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 141 -~~~~~~~~~~--~~~~~-~---~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
........++ ++.+. . ....+++..... .++......++.++++.+|+.....++++.+|||||||||+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 1111122233 22211 1 122223322111 2344556678899999999963456789999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999998764 579999999999999999999999999997 4577766543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=320.71 Aligned_cols=204 Identities=21% Similarity=0.256 Sum_probs=167.6
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~---------- 429 (582)
++|+++|++++|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 3 ~~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 3 KRIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred ccEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 36899999999964 5799999999999999999999999999999999999974 6999987542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc---CC---CC-hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE---YP---GN-EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +....++.+++... .. .. ..+.+.++++.+|+.. .....++.+|||||+|||+|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 82 AVRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred HHhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 13778888643 33446777766421 11 11 2345677899999842 22345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEe------CCeEEEEcCCHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCE------NQAVTRWEGDIM 568 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~ 568 (582)
||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||+|++|+ +|+++ +.|+++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~ 238 (258)
T PRK14241 160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTE 238 (258)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHH
Confidence 99999999999999999999999999999999876 4699999999999999999999997 79996 578888
Q ss_pred HHHH
Q 007982 569 DFKL 572 (582)
Q Consensus 569 ~~~~ 572 (582)
++..
T Consensus 239 ~~~~ 242 (258)
T PRK14241 239 KIFS 242 (258)
T ss_pred HHHh
Confidence 7753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=325.81 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=160.5
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ 147 (582)
+|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++... .......
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV----KVMGREVNAENEKWVRS 79 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE----EECCEECCCCCHHHHHh
Confidence 699999999996 5689999999999999999999999999999999999998876543 2222111 0111112
Q ss_pred Hhcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 148 ILGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 148 ~~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.+++ +.+ ......+++..... ..+....+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2332 221 11123333322111 2333445667899999999964 5788999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
+|||||||++||+.++.++.++|+++ +.|||++|||++++..+||+|++|++|+++. .|+.+.
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 224 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSL 224 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999765 5799999999999999999999999999974 566553
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.82 Aligned_cols=201 Identities=23% Similarity=0.329 Sum_probs=168.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|.++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999964 67999999999999999999999999999999999999999999987542 24788888
Q ss_pred hhhhhcCCcccHHHHHHhcC--C----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKEY--P----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++.... . ....+.+..+++.+|+..... ..+..||+||+|||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 743 223456766654211 1 112346778899999986554 4558999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+|||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|++.. .|+..++..
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~~~ 220 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEIYE 220 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHHh
Confidence 99999999999999988764 5799999999999999999999999999974 777776654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=320.62 Aligned_cols=212 Identities=27% Similarity=0.450 Sum_probs=161.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHH------HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEE------RLKLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~------~~~~~~ 144 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+... ..+... ......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 6999999999998899999999999999999999999999999999999988876543210 011100 000111
Q ss_pred HHHHhcc--ccCC---CcchHHHHHHH---HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 145 EAEILGA--QEDG---GGEQLERVYER---LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 145 ~~~~~~~--~~~~---~~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
....+++ +... .....+++... ...........++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHHHhc
Confidence 1122222 2111 12233333221 112233344567889999999974 4678999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|++|||||||++||+.++.++.++|.++ +.|||++|||++++..+||++++|++|+++ +.|+.+++.
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999988764 679999999999999999999999999997 457766554
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=335.68 Aligned_cols=196 Identities=22% Similarity=0.260 Sum_probs=165.4
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------------ee
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------------LR 431 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------------~~ 431 (582)
++.+.|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 29 ~~~~~~g-~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETG-LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhC-CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 3445564 457899999999999999999999999999999999999999999988652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|++. +.+..|+.+++.... +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+
T Consensus 108 i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 108 VSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-KKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred EEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 889999864 445578888765321 111 2356788999999986554 5568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||||||++||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++|+++. .|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999988664 6799999999999999999999999999974 78888775
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=331.60 Aligned_cols=209 Identities=22% Similarity=0.339 Sum_probs=163.4
Q ss_pred ceEEeeeEEEECC-------------eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH
Q 007982 72 DIRIESLSVTFHG-------------HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y~~-------------~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~ 138 (582)
+|+++||+++|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+.+++.|.+. +++.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~----~~G~ 83 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA----WLGK 83 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE----ECCE
Confidence 7999999999962 4699999999999999999999999999999999999988765432 2221
Q ss_pred HH------HHHHHHHHhc--cccC-----CCcchHHHHHHHHH----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCC
Q 007982 139 RL------KLEKEAEILG--AQED-----GGGEQLERVYERLE----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFS 201 (582)
Q Consensus 139 ~~------~~~~~~~~~~--~~~~-----~~~~~~~~~~~~l~----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 201 (582)
.. ........+. +|.. +.....+++.+.+. .+...+...++.++++.+|+.....++++++||
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS 163 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence 11 1111111222 2221 11233344433322 234455667889999999996556789999999
Q ss_pred hhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEE
Q 007982 202 GGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277 (582)
Q Consensus 202 GGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 277 (582)
|||+|||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|.+|+++.
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive- 242 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE- 242 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999999988654 6799999999999999999999999999974
Q ss_pred cCChhHHH
Q 007982 278 TGNFDQYV 285 (582)
Q Consensus 278 ~g~~~~~~ 285 (582)
.|+.+++.
T Consensus 243 ~g~~~~i~ 250 (331)
T PRK15079 243 LGTYDEVY 250 (331)
T ss_pred EcCHHHHH
Confidence 56766554
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=316.82 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=155.0
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 151 (582)
|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++.... .......+++
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~----~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY----IGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEECCcCCcccceEEE
Confidence 5789999999998999999999999999999999999999999999999888765432 2111100 0000011221
Q ss_pred --ccC---CCcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 152 --QED---GGGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 152 --~~~---~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+.. ......+++... ...........++.++++.+|+.. ..++++.+||||||||++|||||+.+|++||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 111 111223333221 112334445567889999999974 568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEE
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFY 277 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 277 (582)
|||++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|+++.+
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 999999999999999998764 67999999999999999999999999999753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=315.18 Aligned_cols=200 Identities=25% Similarity=0.396 Sum_probs=156.5
Q ss_pred ceEEeeeEEEECCe----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH--HHHH
Q 007982 72 DIRIESLSVTFHGH----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK--LEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 145 (582)
+|+++|++++|+++ ++|+++||+|++|++++|+|+||||||||+++|+|+.+++.|.+. +++.... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~ 76 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEA 76 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE----ECCEEcccCHHHH
Confidence 47899999999876 899999999999999999999999999999999999988766432 2211110 0111
Q ss_pred HHHhcc--ccCC---CcchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 146 AEILGA--QEDG---GGEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 146 ~~~~~~--~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
...+++ +... .....+++.. ............++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 122322 2211 1123333321 1112333455678899999999964 568899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
++|||||||++||+.++.++.++|+++ +.|+|+||||++++..+||++++|++|+++.
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999775 5799999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.35 Aligned_cols=202 Identities=22% Similarity=0.289 Sum_probs=167.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEcCc-----------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV---PLDGMVRRHNH-----------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~---p~~G~i~~~~~-----------~~ 431 (582)
+++++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|...+. ..
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 5789999999964 679999999999999999999999999999999999974 69999987652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc--C-C-----CChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE--Y-P-----GNEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~--~-~-----~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lAral 500 (582)
++|++|... +. ..++.+++... . . ....+++.++++.+++... ....++.+|||||+|||+|||||
T Consensus 81 i~~~~q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPN--VF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCc--cc-cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 789988753 22 35777776421 1 1 1123457788999999532 22345689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++|+++. .|+..++..
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 230 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEFFE 230 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999875 6799999999999999999999999999974 688777653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=321.84 Aligned_cols=209 Identities=27% Similarity=0.421 Sum_probs=162.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----------
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----------- 140 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----------- 140 (582)
.|+++||++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+++.|.+. +++...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV----VNGQTINLVRDKDGQLK 80 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE----ECCEEcccccccccccc
Confidence 68999999999999999999999999999999999999999999999999888765432 221111
Q ss_pred -----HHHHHHHHhcc--ccCC---CcchHHHHHHH---HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 141 -----KLEKEAEILGA--QEDG---GGEQLERVYER---LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 141 -----~~~~~~~~~~~--~~~~---~~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
........+.+ +... .....+++... +........+.++.++++.+|+.....++++.+||||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 00111122322 2111 12333443211 11233445567789999999997544478899999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 99999999999999999999999999999999998765 679999999999999999999999999997 45777665
Q ss_pred H
Q 007982 285 V 285 (582)
Q Consensus 285 ~ 285 (582)
.
T Consensus 240 ~ 240 (257)
T PRK10619 240 F 240 (257)
T ss_pred h
Confidence 4
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=316.45 Aligned_cols=211 Identities=26% Similarity=0.387 Sum_probs=159.9
Q ss_pred ceEEeeeEEEECCe----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHHH-HHHHHH
Q 007982 72 DIRIESLSVTFHGH----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEER-LKLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~~-~~~~~~ 145 (582)
+|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+... ..+.... ......
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999876 89999999999999999999999999999999999998876653211 0111000 001111
Q ss_pred HHHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 146 AEILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 146 ~~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
...+++ +... .....+++.... ...........+.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-KADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 122322 2211 122333332221 12233344567889999999974 567899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 999999999999999999999998764 5799999999999999999999999999974 4665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=323.04 Aligned_cols=205 Identities=23% Similarity=0.325 Sum_probs=168.2
Q ss_pred CCeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 364 PPVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
+++|+++|+++.|++. +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 5689999999999743 45899999999999999999999999999999999999999999987652 14
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|..... .+..++.+++... . .. ...+++.++++.+|+.+... .++.+|||||+|||+||||++.+|+
T Consensus 85 i~~v~q~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-YEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHh-cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78888875321 2234444443221 1 11 12345778899999976554 4568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~~ 231 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY-KEGTPTEIFD 231 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEE-EecCHHHHhc
Confidence 99999999999999999999988764 5699999999999975 9999999999997 4788877654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=323.21 Aligned_cols=205 Identities=19% Similarity=0.273 Sum_probs=168.5
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
++++|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 36 ~~~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 5678999999999964 679999999999999999999999999999999999987 68999987542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc-----CCCChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGNEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|+.. +.. .++.+++... .+....+++.++++.+|+... ....++.+|||||||||+|
T Consensus 115 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKPN--PFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCCc--cCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 24788888753 222 3677665421 111124567889999998531 2245668999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEE-EEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIW-VCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|||++ +|++|+++ ..|+..++..
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~~~ 269 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKIFE 269 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHHHh
Confidence 99999999999999999999999999999999887 4699999999999999999975 57999997 4788777643
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=299.97 Aligned_cols=202 Identities=26% Similarity=0.380 Sum_probs=168.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------eEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------RIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------~~~~ 434 (582)
||+++|++++..+ +.+++++||++.+||++||+||||||||||||.|+|.+.|++|++.+.+.. ..+.
T Consensus 1 mi~a~nls~~~~G-r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLAG-RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEeec-ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 5889999999864 679999999999999999999999999999999999999999999887642 2456
Q ss_pred echhhhhhcCCcccHHHHHHhc-CC----C---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc----
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE-YP----G---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR---- 502 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~-~~----~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~---- 502 (582)
++|+.. +.+..++.+.+... .+ . .+.+-++++|.+.++.++..+ -+.+|||||||||.|||.|++
T Consensus 80 lpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 LPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-DYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred cccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-chhhcCchHHHHHHHHHHHHHccCC
Confidence 677643 44556777665432 11 1 123347889999999887654 457999999999999999975
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 --QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 --~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++++|+|||||+.||+.....++++.+++ +++|+.|-||++++..+||||++|.+|+++. .|++.+...
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~vlt 230 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDVLT 230 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHhcC
Confidence 45699999999999999998888887776 6789999999999999999999999999975 899888754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=324.60 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=170.5
Q ss_pred CCeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC---cEEEEcCc----------
Q 007982 364 PPVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD---GMVRRHNH---------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~---G~i~~~~~---------- 429 (582)
.++|+++|+++.|++ .+++|+++||+|.+|++++|+||||||||||+++|+|+++|++ |+|...+.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 457999999999964 2469999999999999999999999999999999999999997 89986542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc--CCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE--YPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
..++|++|.+.. ..+..++.+++... .... ..+++.++++.+||.+... +++.+|||||+|||+|||||+.
T Consensus 83 ~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHc
Confidence 247899887632 22356777776421 1111 1245788999999986554 5568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++. .||++++|++|+++. .|+++++..
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 232 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIFS 232 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999999998764 569999999999995 799999999999974 788877654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=319.02 Aligned_cols=203 Identities=22% Similarity=0.283 Sum_probs=166.8
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC---CCC--CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD---LVP--LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl---~~p--~~G~i~~~~~---------- 429 (582)
++|+++|+++.|+. +.+|+|+||+|.+|++++|+||||||||||+++|+|+ ++| ++|+|.+.+.
T Consensus 2 ~~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 68999999999964 6799999999999999999999999999999999997 454 5899976542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc--CC---CC--hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE--YP---GN--EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~~--~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +. ..++.+++... .. .. ..+.+.++++.+|+... ....++.+|||||||||+|
T Consensus 81 ~~~~~i~~v~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPN--PF-PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCc--cC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 13788888753 22 24777665421 11 11 23457788999998542 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~~ 234 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIFT 234 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHhc
Confidence 99999999999999999999999999999999876 469999999999999999999999999997 5788887753
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=320.73 Aligned_cols=205 Identities=22% Similarity=0.275 Sum_probs=168.8
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV--P---LDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~--p---~~G~i~~~~~-------- 429 (582)
+.++|+++|+++.|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.+.+.
T Consensus 9 ~~~~l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 4678999999999964 579999999999999999999999999999999999987 3 5899976542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc--CCC--C---hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE--YPG--N---EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~---~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... +.. .++.+++... ... . ..+++.++++.+++... ....++.+|||||+|||
T Consensus 88 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 88 LVELRKNIGMVFQKGN--PFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHHHhhceEEEecCCc--ccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 23788888753 222 3777765421 111 1 12346778899998531 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ ..|+++++..
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 243 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMFS 243 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHhh
Confidence 9999999999999999999999999999999999876 479999999999999999999999999997 4789888754
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=318.88 Aligned_cols=204 Identities=19% Similarity=0.216 Sum_probs=168.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~--------- 429 (582)
+|+|+++|+++.|++ +.+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 478999999999964 6799999999999999999999999999999999999875 7999987542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc---CC--CC--hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE---YP--GN--EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +. ..++.+++... .. .. ..+++.++++.+|+.. .....++.+|||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPN--PF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCC--cC-CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 23788888753 22 36777766421 11 11 1245678899998742 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+++.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ +.|+.++...
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 235 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI-EFNKTEKIFL 235 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE-EeCCHHHHhc
Confidence 999999999999999999999999999999999876 478999999999999999999999999997 4788877653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=318.14 Aligned_cols=204 Identities=22% Similarity=0.312 Sum_probs=167.2
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CC---CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VP---LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p---~~G~i~~~~~--------- 429 (582)
.++|+++|++++|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|+. .| ++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 3 EPILQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred CceEEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 458999999999964 57999999999999999999999999999999999985 46 4899987542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc---CC--CC--hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE---YP--GN--EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... + +..++.+++... .. .. ..+.+.++++.+++... ....++.+|||||||||+
T Consensus 82 ~~~~~~i~~v~q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 82 VDLRKEIGMVFQQPN--P-FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred HhhhhcEEEEecCCc--c-CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 24788888753 2 235777776421 11 11 13456778889987431 224566899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ ..|+..++..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 236 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQMFM 236 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999999999999999999999876 479999999999999999999999999997 4788887753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=325.03 Aligned_cols=208 Identities=20% Similarity=0.298 Sum_probs=160.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 146 (582)
||+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ......
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL----WQGKPLDYSKRGLLALR 76 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEE----ECCEEcccccCCHHHHH
Confidence 48899999999988899999999999999999999999999999999999988766432 221111 001111
Q ss_pred HHhcc--ccCC---C-cchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QEDG---G-GEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~~---~-~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ +... . ....+++..... .........++.++++.+|+.+ ..++++.+||||||||++|||||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHHHHHHHHHcCC
Confidence 22322 2111 1 112222221111 2233344566888999999964 567899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEVF 224 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999998775 5799999999999999999999999999974 56766654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=329.28 Aligned_cols=215 Identities=21% Similarity=0.289 Sum_probs=163.9
Q ss_pred cceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHH------
Q 007982 71 RDIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEE------ 138 (582)
Q Consensus 71 ~~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~------ 138 (582)
.+|+++|+++.|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+.+++.|.+... ..+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 37999999999974 369999999999999999999999999999999999998876654211 011100
Q ss_pred -------H-HHHHHHHHHhc--cccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCCh
Q 007982 139 -------R-LKLEKEAEILG--AQEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSG 202 (582)
Q Consensus 139 -------~-~~~~~~~~~~~--~~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSG 202 (582)
. .........++ ++.+. .....+++..... ..+......++.++++.+|+.....++.+.+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 0 01111122233 22211 1122333322211 2334455678899999999964456889999999
Q ss_pred hHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcC
Q 007982 203 GWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTG 279 (582)
Q Consensus 203 GqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g 279 (582)
||||||+|||||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g 258 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTG 258 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeC
Confidence 9999999999999999999999999999999999999998754 679999999999999999999999999997 467
Q ss_pred ChhHHHH
Q 007982 280 NFDQYVQ 286 (582)
Q Consensus 280 ~~~~~~~ 286 (582)
+.+++..
T Consensus 259 ~~~~~~~ 265 (320)
T PRK13631 259 TPYEIFT 265 (320)
T ss_pred CHHHHhc
Confidence 7776654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=317.43 Aligned_cols=208 Identities=23% Similarity=0.327 Sum_probs=158.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
.|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL----IDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEEhhhcChHHhhhc
Confidence 58999999999988999999999999999999999999999999999999888766432 222111 11111122
Q ss_pred hccccCCCcchHHHHHHHHHcC--ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 149 LGAQEDGGGEQLERVYERLEAL--DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
+++.++........+.+.+... .......++.++++.+|+.....++++.+|||||||||+|||||+.+|++||||||
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2221111110011333332210 01112356788999999964456889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 227 TNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 227 t~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|++||+.++.++.+.|+++ +.|||++|||++++..+||+|++|++|+++.. |..+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 219 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY-AKTYDF 219 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe-CCHHHH
Confidence 9999999999999988764 68999999999999999999999999999754 555444
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=314.80 Aligned_cols=194 Identities=26% Similarity=0.396 Sum_probs=150.5
Q ss_pred EEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc--
Q 007982 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA-- 151 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-- 151 (582)
+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++.... .....+++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i----~~~g~~~~--~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI----RVFGKPLE--KERKRIGYVP 74 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE----EECCccHH--HHHhheEEec
Confidence 36899999998899999999999999999999999999999999999988875543 33332221 11112222
Q ss_pred ccCCC-----cchHHHHHHHHHc------CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 152 QEDGG-----GEQLERVYERLEA------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 152 ~~~~~-----~~~~~~~~~~l~~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
+.... ....+++...... ........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 21111 1223333211110 011234567889999999964 56889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|.+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 9999999999999999999998775 47999999999999999999999998743
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=353.26 Aligned_cols=203 Identities=24% Similarity=0.330 Sum_probs=172.1
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 3 ~~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 3 TPYISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred CceEEEeeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 368999999999964 67999999999999999999999999999999999999999999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC------CC-------ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY------PG-------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
++|++|... +....++.+++.... .. ...+++.++++.+|+.... ++++.+|||||||||+|||
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 82 IGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-DEKVANLSISHKQMLEIAK 158 (510)
T ss_pred eEEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-ccchhhCCHHHHHHHHHHH
Confidence 889988753 334567777664211 01 1134578899999997654 5677999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVS 233 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCC
Confidence 999999999999999999999999999988765 579999999999999999999999999996 688887753
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=339.40 Aligned_cols=208 Identities=24% Similarity=0.361 Sum_probs=162.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+.+|+.|.+. +++... ........
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~----l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL----VAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE----ECCEEcCcCCHHHHhcc
Confidence 69999999999999999999999999999999999999999999999999988766432 221110 11111122
Q ss_pred hcc--ccCC---CcchHHHHHHHH----HcCC--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 149 LGA--QEDG---GGEQLERVYERL----EALD--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l----~~~~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+++ +... .....+++.... ..+. .....+++.++++.+|+.+ +.++++.+|||||||||+|||||+++
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-FADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 222 2111 122333332110 0111 2344567899999999974 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..++++|+++ +.|||++|||++++..+|||+++|++|+++. .|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 9999999999999999999999998765 5799999999999999999999999999974 67776654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=315.22 Aligned_cols=192 Identities=23% Similarity=0.343 Sum_probs=159.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
+++|+++|+++.|++ +.+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 468999999999964 67999999999999999999999999999999999999999999987652 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhc---CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE---YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
+|++|... + +..++.+++... .. ....+.+.++++.+|+.....+.++.+|||||+|||+|||||+.+|++||
T Consensus 84 ~~~~q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPT--L-FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEecccc--c-ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88888743 2 234777766421 11 12345678899999996433356778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEe--CCeE
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCE--NQAV 560 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~--~G~i 560 (582)
|||||+|||+.++..+.+.|.++ +.|||+||||++++. .||++++|+ .|+|
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM 217 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH
Confidence 99999999999999999988764 569999999999995 699999996 4444
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.24 Aligned_cols=206 Identities=25% Similarity=0.371 Sum_probs=157.6
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HHH
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AEI 148 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~~ 148 (582)
|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL----FDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE----ECCEECCCCCHHHHHhcC
Confidence 4689999999988899999999999999999999999999999999999888765432 211110 00010 111
Q ss_pred hcc--ccCC---CcchHHHHHHHHHcC------------ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 149 LGA--QEDG---GGEQLERVYERLEAL------------DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l~~~------------~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
+++ +... .....+++....... .......++.++++.+|+.. ..++++.+|||||||||+||
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHH
Confidence 221 2111 112333332211111 12334567889999999974 56889999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHh
Confidence 9999999999999999999999999999999764 579999999999999999999999999996 45665544
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=317.56 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=161.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 146 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ......
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 76 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI----VDGLKVNDPKVDERLIR 76 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEECCcCChhHHHHh
Confidence 47899999999988999999999999999999999999999999999999888765432 221110 011111
Q ss_pred HHhcc--ccCC---CcchHHHHHHHH---HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QEDG---GGEQLERVYERL---EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~~---~~~~~~~~~~~l---~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ +... .....+++.... ..........++.++++.+|+.. ..++++.+|||||||||+|||||+.+|
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 77 QEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred hceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence 12221 2111 122333332211 12233445567889999999964 568899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++.++.++|+++ +.|+|++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence 999999999999999999999998765 679999999999999999999999999997 457766554
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=311.86 Aligned_cols=191 Identities=26% Similarity=0.388 Sum_probs=161.5
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEEE
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIAQ 434 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~~ 434 (582)
++++|+++|++++|++ +.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 8 ~~~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 4578999999999964 57999999999999999999999999999999999999999999987653 13778
Q ss_pred echhhhhhcCCcccHHHHHHhc--C-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE--Y-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
++|... +....++.+++... . .....+.++++++.+++.... +.++.+|||||||||+|||+++.+|++|||||
T Consensus 87 ~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-DTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 887643 33445777665321 1 122345678899999998654 45678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeC
Q 007982 512 PTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCEN 557 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~ 557 (582)
||++||+.++..+.+.|.++ +.|||++|||++++.++||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999998765 68999999999999999999999863
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=314.72 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=154.9
Q ss_pred ceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHH
Q 007982 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~ 144 (582)
+|+++|+++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~i~~~~~~~~~~ 76 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW----FSGHDITRLKNREVPF 76 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEEcccCChhHHHH
Confidence 47899999999 677899999999999999999999999999999999999988765432 221111 0111
Q ss_pred HHHHhcc--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 145 EAEILGA--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 145 ~~~~~~~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
....+++ +... .....+++... ...........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 77 LRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred HHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 1122322 2211 11223333221 112333444557888999999975 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
|++|||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||++++|++|+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999988765 579999999999999999999999999985
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=317.97 Aligned_cols=203 Identities=21% Similarity=0.294 Sum_probs=167.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEcCc-----------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV--P---LDGMVRRHNH----------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~--p---~~G~i~~~~~----------- 429 (582)
.|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|...+.
T Consensus 4 ~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 4 KVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 5899999999964 679999999999999999999999999999999999986 4 6899986542
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhcC-----CC-C-hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKEY-----PG-N-EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +....++.+++...+ .. . ..+.+.++++.+|+... ....++.+|||||+|||+||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 13788888743 334467777664211 11 1 13457788999998531 22356789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|++. ..|+.+++..
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 236 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV-ECGETKKIFT 236 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999876 569999999999999999999999999997 4788887653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=359.71 Aligned_cols=208 Identities=19% Similarity=0.295 Sum_probs=173.4
Q ss_pred CCCeEEEEEEEEEecC---CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------
Q 007982 363 PPPVLQFVEVTFGYTP---DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------- 429 (582)
.+++|+++|++++|+. ..++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|.|.+.+.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 3578999999999963 246999999999999999999999999999999999999999999875431
Q ss_pred ---------------eeEEEechhhhhhcCCcccHHHHHHhc------CCCC-hHHHHHHHHHhcCCCC--ccccCCCCC
Q 007982 430 ---------------LRIAQFHQHLAEKLDMDMSALQYMIKE------YPGN-EEEKMRAAIGRFGLTG--KAQVMPMKN 485 (582)
Q Consensus 430 ---------------~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~l~~~gl~~--~~~~~~~~~ 485 (582)
..++|++|.+...+....++.+++... .... ..+++.++|+.+||.. ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 248899998643455557777776431 1111 2356788999999964 123456789
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 486 LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||||++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 9999999999999999999999999999999999999998888764 579999999999999999999999999997
Q ss_pred EEcCCHHHHH
Q 007982 562 RWEGDIMDFK 571 (582)
Q Consensus 562 ~~~g~~~~~~ 571 (582)
. +|++.++.
T Consensus 249 ~-~g~~~~~~ 257 (623)
T PRK10261 249 E-TGSVEQIF 257 (623)
T ss_pred c-cCCHHHhh
Confidence 4 78887774
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=322.75 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=169.6
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
++|+++|++++|++. .++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999742 35899999999999999999999999999999999999999999987642 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC--CC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY--PG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|.... .....++.+++.... .. . ..+++..+++.+|+.... ++++.+|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 83 IGMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-TREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred eEEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-hCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7888887532 223457777664211 11 1 124567889999997654 45678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELFA 229 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999998754 679999999999996 69999999999997 4788887754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=330.62 Aligned_cols=213 Identities=22% Similarity=0.281 Sum_probs=160.7
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------H
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~ 141 (582)
+|+++||++.|++ ..+|+||||+|++||++||||+||||||||+++|+|+.++......|.+.+++..+ .
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 6899999999976 47999999999999999999999999999999999998642111123333332211 0
Q ss_pred HHHHH-HHhc--cccCC-----CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCCh--hhhhccCCCCChhHHHHH
Q 007982 142 LEKEA-EILG--AQEDG-----GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNK--TMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 142 ~~~~~-~~~~--~~~~~-----~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv 208 (582)
..... ..++ +|... .......+.+.+. .....+.++++.++|+.+||.+ ...++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 11110 1122 22211 1112223333332 2334556678999999999963 346789999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||+.+|+|||+||||++||+.++..++++|+++ +.|+|+||||++++..+||+|++|.+|+|+. .|+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive-~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999988764 6799999999999999999999999999974 5666655
Q ss_pred H
Q 007982 285 V 285 (582)
Q Consensus 285 ~ 285 (582)
.
T Consensus 242 ~ 242 (326)
T PRK11022 242 F 242 (326)
T ss_pred h
Confidence 4
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=318.69 Aligned_cols=202 Identities=18% Similarity=0.285 Sum_probs=166.7
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~---------- 429 (582)
++|+++|++++|+. +++|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|...+.
T Consensus 3 ~~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 47999999999964 679999999999999999999999999999999999997 47999976542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhcC-----CCC--hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKEY-----PGN--EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +. ..++.+++.... ... ..+.+.++++.+++.. ...+.++.+|||||+||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPT--PF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCc--cC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 13778888753 22 357777664211 111 1245677889999842 12245678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 234 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE-AGPTEEMF 234 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 5799999999999999999999999999974 68877764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=312.58 Aligned_cols=201 Identities=27% Similarity=0.446 Sum_probs=153.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHHHHHHHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~ 151 (582)
|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+... ................+++
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 478999999998899999999999999999999999999999999999998876643210 0110000011111122222
Q ss_pred --ccCC---CcchHHHHHHH---HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 152 --QEDG---GGEQLERVYER---LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+... .....+++... ...........++.++++.+|+.. ..++++.+|||||+|||+|||||+.+|++|||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2111 12233333221 112233445567889999999974 56889999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 224 DEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
||||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|++
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999865 57999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=324.03 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=168.5
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
+.++|+++|++++|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 36 ~~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 5678999999999964 579999999999999999999999999999999999864 49999987542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc--C---CCC--hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE--Y---PGN--EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... +.. .++.+++... . ... ..+.+.++++.+|+.. .....++.+|||||+|||
T Consensus 115 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 24788888753 222 3777776431 1 111 1345677888888742 122456689999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. +.|+..++..
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~~ 270 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLFT 270 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999999876 458999999999999999999999999996 5788877653
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=312.32 Aligned_cols=188 Identities=24% Similarity=0.311 Sum_probs=157.0
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------ee
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LR 431 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~ 431 (582)
+.+ +|+++|++ +.+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 445 99999975 444 99999999 999999999999999999999999999999976542 14
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
++|++|... +....++.+++..... ....+++.++++.+|+.... +.++.+|||||||||+||||++.+|++|
T Consensus 77 i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 77 IGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-NRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred EEEEecCCc--cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-hcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 788888742 3345677776542211 11234678899999997644 4567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
||||||+|||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999988764 5799999999999999999999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=316.44 Aligned_cols=197 Identities=29% Similarity=0.415 Sum_probs=153.1
Q ss_pred eEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHH
Q 007982 73 IRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEI 148 (582)
Q Consensus 73 i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 148 (582)
|+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++..... ....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~--~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV----LVDGEPVTG--PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEECcc--ccCc
Confidence 578999999987 789999999999999999999999999999999999988775543 222211100 0111
Q ss_pred hcc--ccC---CCcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGA--QED---GGGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~--~~~---~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++ +.. ......+++... ...........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~ll 153 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVL 153 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 221 111 111223333211 112233344567889999999974 567899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEe--CCeEEE
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQ--NKQLKF 276 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~--~G~i~~ 276 (582)
||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999999999998764 5799999999999999999999999 799863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=352.08 Aligned_cols=201 Identities=23% Similarity=0.290 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
++|+++|++++|++ +.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 3 ~~i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCC-eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 57999999999964 67999999999999999999999999999999999999999999987642 248
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC------CC--C--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY------PG--N--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~------~~--~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|.+. +....++.+++.... .. . ..+++.++++.+|+.+.. ++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-DKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHHHHHHHHhc
Confidence 89999753 445678888764321 11 1 134578899999998654 45679999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ .+|+.+++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI-AEREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EecCcCcC
Confidence 99999999999999999999999888764 579999999999999999999999999996 46666554
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=320.61 Aligned_cols=201 Identities=29% Similarity=0.364 Sum_probs=168.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC--------CcEEEEcCc--------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL--------DGMVRRHNH-------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~--------~G~i~~~~~-------- 429 (582)
+|+++|++++|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 1 ml~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 4789999999964 67999999999999999999999999999999999999998 999987652
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc-CC---------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE-YP---------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... ..+..++.+++... ++ ....+.+.++++.+|+.... ++++.+|||||+|||+|
T Consensus 80 ~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-GRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-cCCcccCCHHHHHHHHH
Confidence 12577887643 22346777776432 11 01234578899999998654 45678999999999999
Q ss_pred HHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEE
Q 007982 497 AWLAY---------RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRW 563 (582)
Q Consensus 497 Aral~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 563 (582)
||||+ .+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ .
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV-A 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-E
Confidence 99999 599999999999999999999999988764 579999999999999999999999999997 4
Q ss_pred cCCHHHHH
Q 007982 564 EGDIMDFK 571 (582)
Q Consensus 564 ~g~~~~~~ 571 (582)
.|+.+++.
T Consensus 236 ~g~~~~~~ 243 (272)
T PRK13547 236 HGAPADVL 243 (272)
T ss_pred ecCHHHHc
Confidence 78887764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=352.36 Aligned_cols=207 Identities=21% Similarity=0.337 Sum_probs=170.0
Q ss_pred CCeEEEEEEEEEecC---CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc------
Q 007982 364 PPVLQFVEVTFGYTP---DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH------ 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~------ 429 (582)
.++|+++|++++|++ .+++|+|+||+|.+||++||+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 468999999999963 24799999999999999999999999999999999999986 7999976541
Q ss_pred ---------eeEEEechhhhhhcCCcccHHHHHHh------cCCCC-hHHHHHHHHHhcCCCCc--cccCCCCCCChhHH
Q 007982 430 ---------LRIAQFHQHLAEKLDMDMSALQYMIK------EYPGN-EEEKMRAAIGRFGLTGK--AQVMPMKNLSDGQR 491 (582)
Q Consensus 430 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGqk 491 (582)
..++|++|.....+....++.+++.. ..... ..+++.++++.+||.+. ..++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 24899999854323333455444321 11111 23567889999999752 22456799999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCH
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDI 567 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 567 (582)
|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ +.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCH
Confidence 9999999999999999999999999999999999998763 679999999999999999999999999996 57887
Q ss_pred HHHH
Q 007982 568 MDFK 571 (582)
Q Consensus 568 ~~~~ 571 (582)
.++.
T Consensus 242 ~~~~ 245 (529)
T PRK15134 242 ATLF 245 (529)
T ss_pred HHHh
Confidence 7764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=359.06 Aligned_cols=204 Identities=27% Similarity=0.388 Sum_probs=180.8
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
.-++++||+|+|+.+ +++|+|+||+|++||++||+|+||||||||+|+|.|+++|++|+|..++. ..+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 359999999999865 46999999999999999999999999999999999999999999998763 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|+.. -+.-|+.+++....+..+.+++.+++...|+.++....| ...||||||||++|||||++
T Consensus 550 g~V~Q~~~---Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 550 GYVLQDPF---LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred eEEcccch---hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 99999853 356789999887777666778888888888766655444 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+|+|||||||||+||+++...+.+.|.++. +|+|+|||++..+ +.||||+||++|+|++ +|+.+++.+.
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIiVl~~Gkiv~-~gs~~ell~~ 697 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRIIVLDQGKIVE-QGSHEELLAQ 697 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEEEccCCceec-cCCHHHHHHh
Confidence 999999999999999999999999999985 8999999999999 5799999999999985 9999998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=310.65 Aligned_cols=197 Identities=27% Similarity=0.379 Sum_probs=153.0
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 151 (582)
|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++.... .......+++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI----TFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE----EECCCcccchHHHHhhEEE
Confidence 578999999998899999999999999999999999999999999999988875543 22222110 0111122222
Q ss_pred --ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 152 --QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
+... .....+++........ ..+.++.++++.+++.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLG--IRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 2111 1122333322111111 12456888999999964 56789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 227 TNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 227 t~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|++||+.++..+.++|+++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999998764 6799999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=315.98 Aligned_cols=206 Identities=25% Similarity=0.336 Sum_probs=158.2
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HHH
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AEI 148 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~~ 148 (582)
|+++||++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+.+|+.|.+. +++... ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL----LDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEecccCCHhHHHhcc
Confidence 5789999999998999999999999999999999999999999999999988766432 221110 00011 111
Q ss_pred hcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++ +... .....+++.... ..........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 221 2111 112233332211 11223344567889999999974 568899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||||++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++ +.|+.+++
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHh
Confidence 999999999999999999988764 579999999999999999999999999996 45666554
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=319.18 Aligned_cols=205 Identities=19% Similarity=0.220 Sum_probs=169.1
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
+.++|+++|++++|+ ++++|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|...+.
T Consensus 17 ~~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 17 EEIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CCeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 456899999999996 4679999999999999999999999999999999999996 58999976542
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhcC---CC--C--hHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKEY---PG--N--EEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~~---~~--~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... + +..++.+++.... .. . ...++.++++.+++.. .....++.+|||||+|||
T Consensus 96 ~~~~~~~i~~v~q~~~--~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 96 VYEMRKHIGMVFQRPN--P-FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred hHHHhcceEEEecCCc--c-ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 24788888743 2 2247777764321 11 1 1345677899999853 123456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||||++.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|++.++..
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 251 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNIFT 251 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999999999999998876 4689999999999999999999999999974 788887743
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=311.71 Aligned_cols=198 Identities=28% Similarity=0.457 Sum_probs=155.0
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-H-HHHHHHhc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-L-EKEAEILG 150 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~ 150 (582)
|+++|+++.|+++.+|+|+||+|++| +++|+||||||||||+++|+|+.+++.|.+ .+++.... . ......++
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI----RIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE----EECCCccccchHHHHhheE
Confidence 57899999999889999999999999 999999999999999999999988876543 22221110 0 11112222
Q ss_pred c--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ +... .....+++... +........+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 2211 11223333221 222333444567889999999974 46789999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 224 DEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
||||++||+.++.++.++|+++ +.|+|+||||++++..+||++++|++|+++.
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999876 5799999999999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=328.74 Aligned_cols=209 Identities=22% Similarity=0.305 Sum_probs=161.4
Q ss_pred ceEEeeeEEEECC----------eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-
Q 007982 72 DIRIESLSVTFHG----------HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL- 140 (582)
Q Consensus 72 ~i~v~nls~~y~~----------~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~- 140 (582)
+|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+.+++.|.+. +++..+
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~----~~g~~l~ 80 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY----YQGQDLL 80 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEE----ECCEEcC
Confidence 7999999999962 5799999999999999999999999999999999999888755432 221111
Q ss_pred -----HHHHHHHHhc--cccCC-----CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHH
Q 007982 141 -----KLEKEAEILG--AQEDG-----GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR 205 (582)
Q Consensus 141 -----~~~~~~~~~~--~~~~~-----~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 205 (582)
........++ +|.+. .......+.+.+. .+.......++.++|+.+||.....++++++||||||
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~ 160 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQR 160 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHH
Confidence 1111111222 22211 0112222222221 2344455678999999999975567899999999999
Q ss_pred HHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCCh
Q 007982 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281 (582)
Q Consensus 206 qRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 281 (582)
|||+|||||+.+|++||+||||++||+.++.+++++|.++ +.|+|+||||++++..+||+|++|.+|+++. .|+.
T Consensus 161 QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive-~g~~ 239 (327)
T PRK11308 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE-KGTK 239 (327)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence 9999999999999999999999999999999999988654 6799999999999999999999999999975 5666
Q ss_pred hHHH
Q 007982 282 DQYV 285 (582)
Q Consensus 282 ~~~~ 285 (582)
+++.
T Consensus 240 ~~~~ 243 (327)
T PRK11308 240 EQIF 243 (327)
T ss_pred HHHh
Confidence 5554
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=312.79 Aligned_cols=204 Identities=27% Similarity=0.388 Sum_probs=157.3
Q ss_pred eEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH--HHHHHHH
Q 007982 73 IRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK--LEKEAEI 148 (582)
Q Consensus 73 i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 148 (582)
|+++||++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++.... .......
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY----INGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEecccchHHHhhh
Confidence 578999999987 7899999999999999999999999999999999999888766432 2211110 0111122
Q ss_pred hcc--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 LGA--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+++ +... .....+++... ....+......++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVL 155 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 222 2111 11223333211 112233344567889999999964 567899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChh
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 282 (582)
||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+
T Consensus 156 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 217 (220)
T cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQ 217 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHH
Confidence 999999999999999999999876 3699999999999999999999999999974 45543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=316.87 Aligned_cols=207 Identities=24% Similarity=0.397 Sum_probs=160.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---------HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---------KL 142 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---------~~ 142 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... ..
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i----~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL----NIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEecccccccchhhH
Confidence 5899999999998899999999999999999999999999999999999998876543 2222111 01
Q ss_pred HHHHHHhcc--ccCC---CcchHHHHHH-H--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 143 EKEAEILGA--QEDG---GGEQLERVYE-R--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 143 ~~~~~~~~~--~~~~---~~~~~~~~~~-~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
......+++ +... .....+++.. . ...........++.++++.+|+.. ..++++.+|||||||||+|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHH
Confidence 111122322 2111 1123333321 1 111223344567889999999964 56889999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+.+|++|||||||++||+.++.++.++|+++ +.|+|++|||++++..+||++++|++|+++ +.|+++++
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 9999999999999999999999999998764 679999999999999999999999999997 45776654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=298.75 Aligned_cols=164 Identities=23% Similarity=0.329 Sum_probs=144.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
|+++|+++.|++++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|...+...++|++|... + +.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~-~~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--L-PL 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--c-cc
Confidence 46899999996446799999999999999999999999999999999999999999999887677999999753 2 23
Q ss_pred ccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 007982 447 MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526 (582)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 526 (582)
.++.+++... ++.+|||||||||+||||++.+|++|||||||++||+.++..+.+
T Consensus 78 ~tv~~nl~~~-------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 78 GTLREQLIYP-------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred ccHHHHhhcc-------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 4565554310 246899999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 527 ALNEWDGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 527 ~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
.|.+++.|+|+||||.+++ .+||++++|+++.
T Consensus 133 ~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 133 LLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9999988999999999876 6999999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=321.87 Aligned_cols=199 Identities=26% Similarity=0.351 Sum_probs=155.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++.... ..... .+.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~-~~v 75 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT----LDGKPVEGPGAER-GVV 75 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEECCCCCCcE-EEE
Confidence 47899999999988999999999999999999999999999999999999988766432 2211110 00000 011
Q ss_pred cccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 151 AQEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 151 ~~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
++... .....+++.... ..........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 154 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 12111 122333332211 12333444567899999999974 5678999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEe--CCeEEE
Q 007982 226 PTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQ--NKQLKF 276 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~--~G~i~~ 276 (582)
||++||+.++.++.++|+++ +.|||+||||++++..+||++++|+ +|+++.
T Consensus 155 Pt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999999999999998765 5799999999999999999999998 599864
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=316.43 Aligned_cols=203 Identities=21% Similarity=0.264 Sum_probs=167.7
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~---------- 429 (582)
++|+++|+++.|++ +++|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|...+.
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYGE-KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeCC-ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 47899999999964 6799999999999999999999999999999999999984 8999986541
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc--C-CC-C---hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE--Y-PG-N---EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~-~~-~---~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +. ..++.+++... . .. . ..+.+.++++.+|+... ..+.++.+|||||+|||+|
T Consensus 81 ~~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 81 EYRKKVGMVFQKPT--PF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HhhhhEEEEecCCc--cC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 24788888753 22 35777766421 1 11 1 22346778889998532 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.+
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI-EYGPTREIVE 234 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHHh
Confidence 99999999999999999999999999999999876 469999999999999999999999999997 5788887754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.21 Aligned_cols=201 Identities=27% Similarity=0.384 Sum_probs=152.0
Q ss_pred ceEEeeeEEEECCe----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---H---
Q 007982 72 DIRIESLSVTFHGH----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---K--- 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~--- 141 (582)
+|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~ 76 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII----FDGKDLLKLSRRL 76 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEEccccchhh
Confidence 47899999999865 799999999999999999999999999999999999988766432 211111 0
Q ss_pred HHHHHHHhcc--ccC-----CCcchHHHHHHHHHcC--Ch-hHHHHH-HHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 142 LEKEAEILGA--QED-----GGGEQLERVYERLEAL--DA-STAEKR-AAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~--~~-~~~~~~-~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
.......+++ +.. ......+++...+... .. ...... +.++++.+++.....++++.+|||||||||+|
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 0111112221 221 1122333332222111 11 112222 35889999995445688999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999998764 5799999999999999999999999999863
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=319.50 Aligned_cols=205 Identities=20% Similarity=0.234 Sum_probs=167.7
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc--------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH-------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~-------- 429 (582)
++++|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 17 ~~~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 4569999999999964 5799999999999999999999999999999999999863 6899976541
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc-----CCCChHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGNEEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|+.. +. ..++.+++... +.....+.+.++++.+++.. .....++.+|||||+|||+|
T Consensus 96 ~~~~~~~i~~v~q~~~--l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 SVKLRRQVGMVFQRPN--PF-PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hHHHhhcEEEEccCCc--cc-cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 24788888753 22 23667666431 11112344667788888742 12345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEe---------CCeEEEEcC
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCE---------NQAVTRWEG 565 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~g 565 (582)
||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|+ +|+++ ..|
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~g 251 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EFS 251 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE-EeC
Confidence 99999999999999999999999999999999876 4789999999999999999999997 79997 578
Q ss_pred CHHHHHH
Q 007982 566 DIMDFKL 572 (582)
Q Consensus 566 ~~~~~~~ 572 (582)
+..++..
T Consensus 252 ~~~~~~~ 258 (274)
T PRK14265 252 PTEQMFG 258 (274)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=335.34 Aligned_cols=209 Identities=25% Similarity=0.357 Sum_probs=164.9
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HHHHHHHHh
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KLEKEAEIL 149 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 149 (582)
.+|+++|++++|++..+|+++||+|++|++++|+|||||||||||++|+|+.+++.|.+. +++... ........+
T Consensus 18 ~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~----i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM----LDGVDLSHVPPYQRPI 93 (377)
T ss_pred ceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE----ECCEECCCCCHHHCCE
Confidence 379999999999988999999999999999999999999999999999999998866432 222111 000111122
Q ss_pred c--cccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 G--AQEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~--~~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
+ +|... .....+++...+. ..+..+.+.++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2 22221 2234455543332 2345566778999999999975 5789999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHh----hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~----~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||++||+..+.++.+.|+ +.+.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~~~ 238 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPEEIY 238 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHHHHH
Confidence 999999999999998876654 357899999999999999999999999999975 56766554
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=332.61 Aligned_cols=195 Identities=22% Similarity=0.262 Sum_probs=164.2
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------eeEEEe
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRIAQF 435 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~~~~~ 435 (582)
|++++|++ .. + ++||+|.+|++++|+|||||||||||++|+|+++|++|+|...+. ..++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 89999964 44 4 999999999999999999999999999999999999999976541 247888
Q ss_pred chhhhhhcCCcccHHHHHHhcCC---C-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 436 HQHLAEKLDMDMSALQYMIKEYP---G-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
+|... +....|+.+++..... . ...+++.++++.+||..... +++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEAR--LFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCCc--cCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 88753 4445688887653211 1 12345789999999986554 5668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVWA 221 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHhc
Confidence 99999999999999988764 578999999999999999999999999997 5788887754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=313.71 Aligned_cols=200 Identities=26% Similarity=0.360 Sum_probs=160.6
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEEe
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQF 435 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~~ 435 (582)
|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 468999999964457999999999999999999999999999999999999999999987652 237888
Q ss_pred chhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCC-----------CCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL-----------TGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
+|... + +..|+.+++...........+...+..+++ .... ..++.+|||||||||+|||||+.+|
T Consensus 81 ~q~~~--~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 81 PQDTV--L-FNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred CCCCh--h-hcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 88753 2 235777776543222222223333433333 3222 2346799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|.++ +.|||+|||+.+++.. ||++++|++|++. +.|+.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHhh
Confidence 999999999999999999999998765 5699999999999965 9999999999996 5788877754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=314.60 Aligned_cols=201 Identities=28% Similarity=0.364 Sum_probs=159.9
Q ss_pred EEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 367 LQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 367 l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
|+++|+++.|++ +.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 246999999999999999999999999999999999999999999987652 2478
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhc-----------CCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRF-----------GLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
|++|... +. ..++.+++...........+...++.+ ++.... ..++.+|||||+|||+|||+|+.
T Consensus 81 ~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 81 LVSQEPV--LF-DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV-GERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EECCchh--hh-hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceee-ccCCccCCHHHHHHHHHHHHHhc
Confidence 8888753 22 247777764322111122233333333 333223 34558999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++. +||++++|++|+++ +.|+.+++...
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~~ 227 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMAQ 227 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhhc
Confidence 99999999999999999999999999875 468999999999997 89999999999996 57888777553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=323.01 Aligned_cols=209 Identities=24% Similarity=0.370 Sum_probs=162.9
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~ 145 (582)
+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+++.|.+. +++... .....
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~----i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL----FDGKPIDYSRKGLMKL 80 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEE----ECCEECCCCcchHHHH
Confidence 799999999996 57899999999999999999999999999999999999988766432 222111 11111
Q ss_pred HHHhcc--ccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 AEILGA--QEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 ~~~~~~--~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+++ +... .....+++..... .++......++.++++.+|+.. ..++++.+||||||||++|||||+.+
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 222332 2211 1122333322111 2334445567899999999974 57899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|++|||||||++||+.++..+.++|+++ +.|||++|||++++..+|||+++|++|+++ +.|+++++..
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999988754 679999999999999999999999999996 5677776653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=318.80 Aligned_cols=209 Identities=23% Similarity=0.341 Sum_probs=158.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~-----~ 141 (582)
.|+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.. ++.|. +.+++... .
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~----i~~~g~~i~~~~~~ 81 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE----ILLDGENIYDPHVD 81 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE----EEECCEEccccccC
Confidence 6999999999998889999999999999999999999999999999999853 23332 22222111 0
Q ss_pred HHHHHHHhcc--ccCC--CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG--GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +... .....+++..... .. .....+.++.++++.+|+.. ...++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 1111122322 2111 1123333322221 11 22334567888999999842 245788999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14242 162 RALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQIF 236 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999999999974 56666543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=316.10 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=160.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----CCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-----MSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-----~~~~~~~i~~~~~~~-----~ 141 (582)
+|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|+ .|.+ .+++... .
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i----~~~g~~~~~~~~~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV----LFDGQDIYDKKID 76 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE----EECCEEccccccc
Confidence 478999999999889999999999999999999999999999999999998775 4432 2222111 0
Q ss_pred HHHHHHHhcc--ccCCC--cchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDGG--GEQLERVYERLE--A-LDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +.... ....+++..... . ........++.++++.+|+.. ...++++.+|||||||||+||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred hHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 1111122322 21111 223333322211 1 123444567889999999961 346789999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++..+.++|+++ +.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 231 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQIF 231 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999875 3799999999999999999999999999974 56666553
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=316.45 Aligned_cols=203 Identities=21% Similarity=0.293 Sum_probs=165.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEcCc-----------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-----DGMVRRHNH----------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-----~G~i~~~~~----------- 429 (582)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999996 467999999999999999999999999999999999999874 899976541
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--CC---CCh--HHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--YP---GNE--EEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~~~--~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +....++.+++... .. ... .+.+.++++.+++.. ...+.++.+|||||+|||+||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 14788888753 33445777766421 11 111 233555667776532 122456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+|+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ ..|+++++..
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 236 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLFT 236 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999876 479999999999999999999999999997 4788887754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=321.25 Aligned_cols=209 Identities=19% Similarity=0.275 Sum_probs=159.2
Q ss_pred ceEEeeeEEEECC---------eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--
Q 007982 72 DIRIESLSVTFHG---------HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-- 140 (582)
Q Consensus 72 ~i~v~nls~~y~~---------~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-- 140 (582)
+|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~ 79 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL----IDDHPLHF 79 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE----ECCEECCC
Confidence 6999999999962 4799999999999999999999999999999999999988766532 221111
Q ss_pred -HHHHHHHHhccccCCC-------cchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHH
Q 007982 141 -KLEKEAEILGAQEDGG-------GEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 141 -~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 209 (582)
........+++.++.. ....+.+...+. .+......+.+.++++.+|+.....++++.+|||||||||+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 0111111222211111 111112211111 12333445678899999999544567889999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+|||+++++..+||++++|++|+++ ..|+++++.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 999999999999999999999999999999998764 679999999999999999999999999996 467766654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=318.22 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=160.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH-----H------
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER-----L------ 140 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~-----~------ 140 (582)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++.. .
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV----HYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE----EECCccccccccccCCHH
Confidence 6999999999998899999999999999999999999999999999999998876643 222211 1
Q ss_pred HHHH-HHHHhcc--ccCC-----CcchHHHHHHHHHc---CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHH
Q 007982 141 KLEK-EAEILGA--QEDG-----GGEQLERVYERLEA---LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 141 ~~~~-~~~~~~~--~~~~-----~~~~~~~~~~~l~~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 209 (582)
.... ....+++ +... .....+++...+.. .+....+.++.++++.+++.....++++.+|||||||||+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 0001 0111221 2211 01222233222211 1223445678899999999644567899999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999999988653 679999999999999999999999999997 456666543
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=315.76 Aligned_cols=207 Identities=25% Similarity=0.364 Sum_probs=159.2
Q ss_pred eEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 73 IRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 73 i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF----IDGEDIREQDPVELRRK 76 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE----ECCeEcCcCChHHhhcc
Confidence 468999999988 7899999999999999999999999999999999999988766432 221110 00111112
Q ss_pred hcc--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCCh-hhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 149 LGA--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNK-TMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
+++ +... .....+++... +...+......++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 222 2111 12233333221 112233445567889999999974 356889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||||++||+.++.++.+.|+++ +.|||++||+++++..+||+|++|++|+++. .|+.+++
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9999999999999999999998764 6799999999999999999999999999974 4665544
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=316.05 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=161.2
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEcCce-----------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNHL----------- 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl--~~p~~G~i~~~~~~----------- 430 (582)
+++|+++|+++.|++ +.+|+|+||+|.+|+++||+|+||||||||+++|+|+ ++|++|+|.+.+..
T Consensus 5 ~~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 458999999999964 5799999999999999999999999999999999998 57999999875421
Q ss_pred -eEEEechhhhhhcCCcccHHHHHHhcC---------CCC----hHHHHHHHHHhcCCCCccccCCCC-CCChhHHHHHH
Q 007982 431 -RIAQFHQHLAEKLDMDMSALQYMIKEY---------PGN----EEEKMRAAIGRFGLTGKAQVMPMK-NLSDGQRSRVV 495 (582)
Q Consensus 431 -~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~ 495 (582)
.+++++|... +....+..+++.... ... ..+++.++++.+|+.....++++. .|||||+|||+
T Consensus 84 ~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 84 LGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 2456666542 222334444432110 001 124567889999997422234455 59999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 568 (582)
|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||++++|++|+++ +.|+++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence 999999999999999999999999999999998875 57999999999999887 8999999999996 578877
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=318.30 Aligned_cols=204 Identities=22% Similarity=0.238 Sum_probs=166.7
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~--------- 429 (582)
.++|+++|++++|++ .++|+|+||+|.+|++++|+||||||||||+++|+|++. |++|+|.+.+.
T Consensus 8 ~~~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 468999999999964 579999999999999999999999999999999999986 47999987542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhcC-----CCChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKEY-----PGNEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|+.. +.. .++.+++.... .....+.+.++++.+++... ....++.+|||||+|||+||
T Consensus 87 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 87 VEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred HHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 13788888753 222 37777664321 11123446667888887421 22456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEe---------CCeEEEEcCC
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCE---------NQAVTRWEGD 566 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~g~ 566 (582)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||+|++|+ +|+++ +.|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCC
Confidence 9999999999999999999999999999999876 4699999999999999999999998 79996 5888
Q ss_pred HHHHHH
Q 007982 567 IMDFKL 572 (582)
Q Consensus 567 ~~~~~~ 572 (582)
.+++..
T Consensus 243 ~~~~~~ 248 (264)
T PRK14243 243 TEKIFN 248 (264)
T ss_pred HHHHHh
Confidence 888753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=312.49 Aligned_cols=188 Identities=27% Similarity=0.353 Sum_probs=156.8
Q ss_pred eEEEEEEEEEecC------CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc--C---c-----
Q 007982 366 VLQFVEVTFGYTP------DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH--N---H----- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~------~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~--~---~----- 429 (582)
+|+++|+++.|++ ...+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+. + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999952 1469999999999999999999999999999999999999999999875 2 1
Q ss_pred ---------eeEEEechhhhhhcCCcccHHHHHHhc---CC--C-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHH
Q 007982 430 ---------LRIAQFHQHLAEKLDMDMSALQYMIKE---YP--G-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv 494 (582)
..++|++|.+. +....++.+++... .. . ...+.+.++++.+|+.....+.++.+|||||+|||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 24788888753 33455666665321 11 1 12356788999999976444567799999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEE
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+||+++.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999998875 579999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=313.15 Aligned_cols=200 Identities=25% Similarity=0.323 Sum_probs=167.3
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++|+++.|++ . +|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..+++++|
T Consensus 1 l~~~~l~~~~~~-~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE-F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC-c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999964 3 899999999999999999999999999999999999999999987652 25788888
Q ss_pred hhhhhcCCcccHHHHHHhcC--C---C-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKEY--P---G-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++.... . . ...+.+.++++.+|+..... +++.+|||||+|||+||||++.+|++|||||
T Consensus 79 ~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NYA--LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-RKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cCc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 742 333456766664211 1 1 12345778899999976554 5568999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+|||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++ ..|+.+++..
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 219 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI-QVGKPEEVFK 219 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHHh
Confidence 99999999999999988764 579999999999999999999999999997 4788776644
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=313.14 Aligned_cols=201 Identities=27% Similarity=0.390 Sum_probs=162.4
Q ss_pred EEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++|++++|++. .++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 36999999999999999999999999999999999999999999987652 23788
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHH---------HHHHHHhc--CCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEK---------MRAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|... + +..++.+++........... +.++++.+ ++.... ..++.+|||||+|||+|||||+.+
T Consensus 81 ~~q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVF--L-FNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI-GERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCe--e-ccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceee-ccCCCcCCHHHHHHHHHHHHHhcC
Confidence 888753 2 23577777653221111112 23444455 555443 345689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||++++|++|++. ..|+++++...
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~~ 226 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLAQ 226 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHHc
Confidence 9999999999999999999999999876 5689999999999976 9999999999997 58888877543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=309.76 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=152.3
Q ss_pred eEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHHH
Q 007982 73 IRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEKE 145 (582)
Q Consensus 73 i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~ 145 (582)
|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... .....
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~i~~~~~~~~~~~ 76 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR----VNGQDVSDLRGRAIPYL 76 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----ECCEEcccCCHHHHHHH
Confidence 468999999965 6899999999999999999999999999999999999888765432 221110 00111
Q ss_pred HHHhcc--ccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 146 AEILGA--QEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 146 ~~~~~~--~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
...+.+ +... .....+++..... .........++.++++.+|+.. ..++++.+||||||||++|||||+.+|
T Consensus 77 ~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 122222 2111 1123333322211 2233444567889999999974 567899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999998765 57999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=319.55 Aligned_cols=204 Identities=21% Similarity=0.300 Sum_probs=168.2
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~--------- 429 (582)
.++|.++|++++|+ ++++|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 56899999999996 46899999999999999999999999999999999999986 6999987542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhcC---CC-Ch---HHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKEY---PG-NE---EEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~~---~~-~~---~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +. ..++.+++.... .. .. ...+.++++.+++... ....++.+|||||+|||+|
T Consensus 98 ~~~~~i~~v~q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPN--PF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCc--cC-CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 24788888753 22 257777664221 11 11 2235677899998642 1235568999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+|+.+|+||||||||++||+.++..+.+.|+++ ..|||+||||++++..+||++++|++|+++. .|+.+++..
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 251 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLFS 251 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999999998876 4799999999999999999999999999974 788887754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=315.97 Aligned_cols=208 Identities=23% Similarity=0.327 Sum_probs=160.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~ 147 (582)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ..... ..
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~----~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL----FGGTDLTGLPEHQIARA 77 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE----ECCeecCCCCHHHHHhc
Confidence 58999999999988999999999999999999999999999999999999888766432 222111 00111 11
Q ss_pred Hhcc--ccCC---CcchHHHHHHHHHc----------CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 148 ILGA--QEDG---GGEQLERVYERLEA----------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l~~----------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
.+++ +... .....+++...... ......+.++.++++.+|+.. ..++++.+|||||+|||+|||
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 1221 1111 11223333211110 011234567889999999974 568899999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|++|||||||++||+.++.++.++|+++ +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 999999999999999999999999999999876 469999999999999999999999999997 456766553
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=318.86 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=159.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--------HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--------KLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--------~~~ 143 (582)
+|+++||++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+.+|+.+. .|.+.+++... ...
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~-~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSA-GSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCC-ceEEEECCEecccccccchhHH
Confidence 799999999999999999999999999999999999999999999999998765310 12222222111 011
Q ss_pred HHHHHhcc--ccCC---CcchHHHHHHHHH----------cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHH
Q 007982 144 KEAEILGA--QEDG---GGEQLERVYERLE----------ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 144 ~~~~~~~~--~~~~---~~~~~~~~~~~l~----------~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 208 (582)
.....+++ +... .....+++..... .......+.++.++++.+|+.+ ..++++.+|||||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-FAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-HHhCCccccCHHHHHHH
Confidence 11122222 2111 1122333321110 0011234567899999999964 56889999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||+.+|+||||||||++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|+++ +.|+++++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 240 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQF 240 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHh
Confidence 9999999999999999999999999999999999765 579999999999999999999999999996 56777765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=292.90 Aligned_cols=204 Identities=23% Similarity=0.387 Sum_probs=172.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
.+.|.++|+.++|+ ...+|++|||+-+.|+++.|+|.+||||||+|+||.=+..|+.|.|..++.
T Consensus 4 ~~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 4 ENALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ccceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 35689999999996 467999999999999999999999999999999999999999999976542
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHhcC------CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHH
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIKEY------PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 492 (582)
.+.++++|++. +-..+|+++++.... ++ ...++++.+|..+|+.+.....| ..|||||+|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FN--LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-~~LSGGQQQ 159 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFN--LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-AHLSGGQQQ 159 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcc--hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-cccCchHHH
Confidence 12455666653 223467888776431 11 23567889999999988776666 699999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
|++|||||+.+|+++|+|||||+|||+-..++...++++ +.|+++|||.|.|+.+++..|+++++|.|- -+|++++
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~q 238 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQ 238 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHH
Confidence 999999999999999999999999999999888887765 789999999999999999999999999995 5999998
Q ss_pred HHH
Q 007982 570 FKL 572 (582)
Q Consensus 570 ~~~ 572 (582)
+..
T Consensus 239 vf~ 241 (256)
T COG4598 239 VFG 241 (256)
T ss_pred Hhc
Confidence 865
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=323.71 Aligned_cols=213 Identities=18% Similarity=0.266 Sum_probs=158.7
Q ss_pred ceEEeeeEEEECCe-----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechH--HHH-HH
Q 007982 72 DIRIESLSVTFHGH-----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDE--ERL-KL 142 (582)
Q Consensus 72 ~i~v~nls~~y~~~-----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~--~~~-~~ 142 (582)
.|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+... ..+.. ... ..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 69999999999764 49999999999999999999999999999999999998876643210 00100 000 01
Q ss_pred HHHHHHhcc--ccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 143 EKEAEILGA--QEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 143 ~~~~~~~~~--~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
......+++ +... .....+++..... .........++.++++.+++.....++++.+|||||||||+|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 111122322 2211 0112222221111 1223344466788999999954456889999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 239 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEIF 239 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999988754 6799999999999999999999999999974 46666543
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=328.75 Aligned_cols=213 Identities=21% Similarity=0.259 Sum_probs=158.0
Q ss_pred ceEEeeeEEEE----CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------H
Q 007982 72 DIRIESLSVTF----HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y----~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~ 141 (582)
+|+++||++.| +...+|+|+||+|.+||+++|+|+||||||||+++|+|+.++......|.+.+++..+ .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999 3467999999999999999999999999999999999998642111123333322211 0
Q ss_pred HHHHH-HHhc--cccCCC-----cchHHHHHHHHHcC--------ChhHHHHHHHHHHHhCCCCh--hhhhccCCCCChh
Q 007982 142 LEKEA-EILG--AQEDGG-----GEQLERVYERLEAL--------DASTAEKRAAEILYGLGFNK--TMQAKKTRDFSGG 203 (582)
Q Consensus 142 ~~~~~-~~~~--~~~~~~-----~~~~~~~~~~l~~~--------~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGG 203 (582)
..... ..++ +|.... ......+.+.+... .....+.++.++|+.+||.+ ...++++.+||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 11100 1122 222211 11222332222111 11234567899999999974 2457899999999
Q ss_pred HHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcC
Q 007982 204 WRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTG 279 (582)
Q Consensus 204 qrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g 279 (582)
|||||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|+|+||||++++..+||+|++|++|+|+. .|
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~g 241 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-TA 241 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999999998764 6799999999999999999999999999974 56
Q ss_pred ChhHHH
Q 007982 280 NFDQYV 285 (582)
Q Consensus 280 ~~~~~~ 285 (582)
+.+++.
T Consensus 242 ~~~~i~ 247 (330)
T PRK15093 242 PSKELV 247 (330)
T ss_pred CHHHHH
Confidence 666554
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=303.42 Aligned_cols=174 Identities=31% Similarity=0.487 Sum_probs=144.2
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcc
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~ 447 (582)
+++|+++.|++ .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. +..... ..
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~-~~~~~~---~~----- 70 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD-LASLSP---KE----- 70 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-CCcCCH---HH-----
Confidence 47899999964 679999999999999999999999999999999999999999999886531 111000 00
Q ss_pred cHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007982 448 SALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527 (582)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 527 (582)
.... ...+.++++.+|+.+.. +.++.+|||||+||++||||++.+|++|||||||++||+.++..+.+.
T Consensus 71 -~~~~---------i~~~~q~l~~~gl~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 71 -LARK---------IAYVPQALELLGLAHLA-DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred -HHHH---------HhHHHHHHHHcCCHhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0000 01112288899998654 456689999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 528 LNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 528 l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|.++ +.|+|++|||++++.++||++++|++|++..
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 8765 5699999999999999999999999999863
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=314.96 Aligned_cols=209 Identities=24% Similarity=0.335 Sum_probs=159.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH-----H---HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER-----L---KLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~-----~---~~~ 143 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++.. . ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT----YIMRSGAELELYQLSEA 78 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----EecccccccccccCCHH
Confidence 69999999999988899999999999999999999999999999999999988765432 22111 1 000
Q ss_pred HH----HHHhcc--ccCC-----CcchHHHHHHHHHcC---ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHH
Q 007982 144 KE----AEILGA--QEDG-----GGEQLERVYERLEAL---DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 144 ~~----~~~~~~--~~~~-----~~~~~~~~~~~l~~~---~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 209 (582)
.. ...+++ +... .....+++...+... .....+..+.++++.+|+.....++.+.+|||||||||+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 00 111222 2211 011222332221111 112345678899999999644568899999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+.+|++|||||||++||+.++.++.++|.++ +.|+|+|||+++++..+||++++|++|+++. .|+.+++.
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~~ 237 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQVL 237 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999999999999988653 6799999999999999999999999999974 46655543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=315.49 Aligned_cols=202 Identities=23% Similarity=0.301 Sum_probs=165.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc-----------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH----------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~----------- 429 (582)
.|+++|+++.|++ +++++|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 5889999999964 5799999999999999999999999999999999999763 6999987542
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--CCC-----ChHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--YPG-----NEEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +. ..++.+++... ... ...+.+.++++.+++.. ...+.++.+|||||+|||+||
T Consensus 82 ~~~~i~~~~q~~~--~~-~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPN--PF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCc--cC-cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 24788888743 22 25677666421 111 12345677888888742 123456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ ..|+.+++..
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 234 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV-EFGDTVDLFT 234 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999876 469999999999999999999999999997 4788777653
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=313.36 Aligned_cols=201 Identities=27% Similarity=0.333 Sum_probs=168.5
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++|++|
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 468999999974 67999999999999999999999999999999999999999999976542 24788888
Q ss_pred hhhhhcCCcccHHHHHHhcC---C-C--ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKEY---P-G--NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~---~-~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
... +....++.+++.... . . ...+.+.++++.+++.... +.++..||+||+||++|||+|+.+|++|||||
T Consensus 80 ~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-DRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 753 333456776664221 1 1 1234578899999997554 45668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 512 PTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+|||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ +.|+.+++..
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~~ 220 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE-QIGSPDEVYD 220 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE-EecCHHHHHc
Confidence 99999999999999998764 579999999999999999999999999997 4788887754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=322.22 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=159.9
Q ss_pred ceEEeeeEEEECC-----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 72 DIRIESLSVTFHG-----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 72 ~i~v~nls~~y~~-----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~----~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR----VDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEEccccccc
Confidence 3889999999975 3699999999999999999999999999999999999888765432 221110
Q ss_pred -HHHHHHHHhc--cccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 141 -KLEKEAEILG--AQED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 141 -~~~~~~~~~~--~~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
........++ ++.. ......+++..... .........++.++++.+|+.....++++.+|||||||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 0011112222 2211 01122333321111 2233445567888999999974456889999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDIF 233 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999998765 5799999999999999999999999999974 46666554
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=348.74 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=171.1
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCc------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNH------------ 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~------------ 429 (582)
.++|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.+.+.
T Consensus 3 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 3 EYLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred CceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 46899999999996 46799999999999999999999999999999999999996 8999987542
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhcC-----C--CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKEY-----P--GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~--~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
..++|++|.+. +....++.+++.... . .. ..+++.++++.+|+.... ++++.+|||||||||+|||||
T Consensus 82 ~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 82 AGIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred CCeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-ccchhhCCHHHHHHHHHHHHH
Confidence 24889999753 444567877764321 0 11 134678899999997654 467799999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ++|+.+++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 230 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI-GTRPAAGM 230 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe-eecccccC
Confidence 9999999999999999999999999998775 579999999999999999999999999996 56776654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=316.48 Aligned_cols=206 Identities=22% Similarity=0.322 Sum_probs=168.7
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC--------------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN-------------- 428 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~-------------- 428 (582)
..|+|.++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+
T Consensus 7 ~~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 7 AEDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 457899999999996 46799999999999999999999999999999999999999997665432
Q ss_pred ---ceeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-h-HHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHH
Q 007982 429 ---HLRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-E-EEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 429 ---~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~-~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 495 (582)
...++|++|... +....++.+++... .... + .+.+.++++.+++.. .....++..||+|||||++
T Consensus 86 ~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 163 (257)
T PRK14246 86 IKLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT 163 (257)
T ss_pred HHHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH
Confidence 124678887753 33445777666421 1111 1 245678899999853 1223456899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||++.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+.+++..
T Consensus 164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~~ 241 (257)
T PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE-WGSSNEIFT 241 (257)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999999999876 4799999999999999999999999999975 677777764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=311.17 Aligned_cols=206 Identities=19% Similarity=0.298 Sum_probs=154.9
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HHH
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AEI 148 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~~ 148 (582)
|+++||+++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+.+++.|.+. +++... ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR----FDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEEcCCCCHHHHHhcC
Confidence 5789999999988999999999999999999999999999999999999988766432 221110 00000 111
Q ss_pred hcc--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhC-CCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 149 LGA--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGL-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
+++ +... .....+++..............++.++++.+ ++.. ..++++.+|||||||||+|||||+.+|++||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lll 155 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-RRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-hhhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 221 2111 1122233322111111223345667788887 4653 5678999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 156 LDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 99999999999999999999765 5799999999999999999999999999964 4655443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=326.11 Aligned_cols=199 Identities=21% Similarity=0.342 Sum_probs=154.0
Q ss_pred EEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHhcc--ccCC
Q 007982 80 VTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEILGA--QEDG 155 (582)
Q Consensus 80 ~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~--~~~~ 155 (582)
++|+++.+|+|+||+|++|+++||+||||||||||+++|+|+.+|+.|.+. +++... ........+++ +...
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~i~~~~q~~~ 76 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR----VAGYDVVREPRKVRRSIGIVPQYAS 76 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEEcccCHHHHHhhcEEecCCCC
Confidence 468888999999999999999999999999999999999999988766432 221111 00111122332 2211
Q ss_pred ---CcchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCC
Q 007982 156 ---GGEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230 (582)
Q Consensus 156 ---~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~L 230 (582)
.....+++.. .+..........++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 1123333321 1222334455667899999999975 568899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 231 DLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 231 D~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|+.++.++.++|+++ +.|||++||+++++..+||+|++|++|+++. .|+++++
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l 211 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEEL 211 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999775 5799999999999999999999999999974 5666554
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=308.08 Aligned_cols=186 Identities=23% Similarity=0.387 Sum_probs=157.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEe
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQF 435 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~ 435 (582)
+|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 4789999999964 67999999999999999999999999999999999999999999987653 136677
Q ss_pred chhhhhhcCCcccHHHHHHhc--C-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKE--Y-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
+|... +....++.+++... . .....++++++++.+|+.+.. ++++.+|||||+|||+||||++.+|++||||||
T Consensus 80 ~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-DVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 76542 33446777776432 1 113446788999999997654 456789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEE
Q 007982 513 TNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
|++||+.++..+.+.|+++ +.|||+||||++++..+.+|++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999876 579999999999999988888877
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=303.06 Aligned_cols=206 Identities=21% Similarity=0.360 Sum_probs=171.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
++++++|+|+|+++.+++|+||++++|++.|++|+|||||||++|+|.|+..++.| .|.|++...... ....+++
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G----~I~~~g~~~~~~-~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG----EITWNGGPLSQE-IKNRIGY 76 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc----eEEEcCcchhhh-hhhhccc
Confidence 58999999999999999999999999999999999999999999999999998855 445555433221 1122332
Q ss_pred ccCC-----CcchHHH--HHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 152 QEDG-----GGEQLER--VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 152 ~~~~-----~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
-+.. ...+.+. .+..+.+++..+++.++..||+++++... ..+++.+||-|++|++.+..+++++|+++|||
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~-~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK-KTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccc-ccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 2211 1222222 35567789999999999999999999864 57899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 225 EPTNHLDLEACVWLEETLKK---FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~---~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||+|||||.+.+.|.+.+.+ .|.|||++||.|+-++++||+++.|++|+.+.+ |+..+.
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~-G~v~~i 217 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY-GTVEDI 217 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe-ccHHHH
Confidence 99999999999999998765 478999999999999999999999999999864 665544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=320.28 Aligned_cols=209 Identities=25% Similarity=0.391 Sum_probs=160.3
Q ss_pred ceEEeeeEEEEC---------CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--
Q 007982 72 DIRIESLSVTFH---------GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-- 140 (582)
Q Consensus 72 ~i~v~nls~~y~---------~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-- 140 (582)
+|+++||++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS----FRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEEccc
Confidence 689999999995 36799999999999999999999999999999999999988766432 221111
Q ss_pred ----HHHHHHHHhcc--ccC-----CCcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHH
Q 007982 141 ----KLEKEAEILGA--QED-----GGGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRM 206 (582)
Q Consensus 141 ----~~~~~~~~~~~--~~~-----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrq 206 (582)
........+++ +.. ......+++...+. .+.......++.++++.+|+.....++++.+|||||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q 157 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ 157 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 00011122222 211 11222333322111 23333445678899999999644568899999999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChh
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 282 (582)
||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+.+
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHH
Confidence 999999999999999999999999999999999988764 679999999999999999999999999997 457766
Q ss_pred HHH
Q 007982 283 QYV 285 (582)
Q Consensus 283 ~~~ 285 (582)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=313.73 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=160.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HH-HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KL-EKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~-~~~~~ 147 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... .. .....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII----IDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEECCCCCHHHHHHh
Confidence 69999999999988999999999999999999999999999999999999888766432 211110 00 00111
Q ss_pred Hhcc--ccCC---CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 148 ILGA--QEDG---GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.+++ +... .....+++..... .......+.++.++++.+|+.. ..++++.+|||||+|||+|||||+.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 2222 2111 1122333321111 1223344567889999999974 5678999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+.++.++.+.|.++ +.|+|++||+++++..+||++++|++|+++. .|+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 225 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEIL 225 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHh
Confidence 99999999999999999998887653 6799999999999999999999999999974 57776654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=313.54 Aligned_cols=207 Identities=23% Similarity=0.357 Sum_probs=158.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH--HHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK--LEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~ 149 (582)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+.+|+.|.+. +++.... .......+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~----~~g~~i~~~~~~~~~~i 76 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS----VAGHDLRRAPRAALARL 76 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE----ECCEEcccCChhhhhhE
Confidence 47899999999988999999999999999999999999999999999999988765432 2211110 00111122
Q ss_pred cc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 GA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
++ +... .....+++.... ...........+.++++.+|+.. ..++++.+|||||+|||+|||||+.+|++||
T Consensus 77 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred EEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22 2211 122233332211 12223334567889999999974 5678999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||++||+.++..+.+.|+++ +.|+|++|||++++.. ||++++|++|+++. .|+.+++.
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~ 220 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELR 220 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 99999999999999999998764 5799999999999975 99999999999974 56665543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=316.67 Aligned_cols=209 Identities=19% Similarity=0.304 Sum_probs=158.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~-----~ 141 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.++ +.|. +.+++... .
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~----i~~~g~~i~~~~~~ 87 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK----VSIEGEDIYEPDVD 87 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceE----EEECCEEcccccch
Confidence 79999999999988999999999999999999999999999999999998764 3333 22222111 0
Q ss_pred HHHHHHHhcc--ccCC--CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG--GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
.......+++ +... .....+++..... .........++.++++.+|+. ....++++.+|||||+|||+|||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 0111122332 2111 1223333322111 223333455688899999884 23457889999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|.++++.
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 241 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQIF 241 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999999875 4799999999999999999999999999974 56666543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=313.68 Aligned_cols=203 Identities=21% Similarity=0.269 Sum_probs=166.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-----DGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-----~G~i~~~~~---------- 429 (582)
++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|...+.
T Consensus 3 ~~l~~~~l~~~~~~-~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEECC-eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 57899999999964 67999999999999999999999999999999999999997 699876431
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc--C---CCC--hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE--Y---PGN--EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~--~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +. ..++.+++... + ... ..+.+..+++.+++... ....++.+|||||+|||+|
T Consensus 82 ~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPN--PF-PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCc--cC-cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 24788888753 22 23777766421 1 111 12446667888887421 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++.. .|++++...
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 235 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEIFS 235 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHHHh
Confidence 99999999999999999999999999999998876 4799999999999999999999999999974 788877654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=313.98 Aligned_cols=203 Identities=21% Similarity=0.287 Sum_probs=164.8
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV--P---LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~--p---~~G~i~~~~~--------- 429 (582)
+++|+++|+++.|+. +.+|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|...+.
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 568999999999974 679999999999999999999999999999999999875 5 5899976542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc--C---CCCh--HHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE--Y---PGNE--EEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~~--~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +.. .++.+++... . .... .+.+.++++.+++.. .....++.+|||||+|||+
T Consensus 82 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 24788888753 222 4666665421 1 1111 234567788887642 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++. .|+..+..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE-FADTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999999999876 4799999999999999999999999999975 66666654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=314.91 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=164.3
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc------------
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH------------ 429 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~------------ 429 (582)
-+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 36899999996 4679999999999999999999999999999999999986 47999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc--C-C---C--ChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE--Y-P---G--NEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~-~---~--~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +.. .++.+++... . . . ...+.+.++++.+|+... ....++.+|||||||||+||
T Consensus 85 ~~~i~~v~q~~~--~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPN--PFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCcc--ccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 24788888753 222 3666665321 1 1 1 122456788999999642 22345689999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|+++ +.|+..++..
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV-EYNTTQEIFK 237 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999999999876 479999999999999999999999999996 5788877754
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=316.86 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=167.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~--------- 429 (582)
.++|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 23 ~~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 568999999999964 5799999999999999999999999999999999999874 8999976542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc--CCC--C---hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE--YPG--N---EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~---~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +.. .++.+++... ... . ..+.+.++++.+++... ..+.++.+|||||+|||+
T Consensus 102 ~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 102 AELRRRVGMVFQRPN--PFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred HHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 24778888743 222 3777766421 111 1 12457778888988531 223566899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++|++. ..|+++++..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 256 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV-EYGDTDTLFT 256 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHhc
Confidence 999999999999999999999999999999998876 479999999999999999999999999996 5788887753
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=310.97 Aligned_cols=191 Identities=25% Similarity=0.322 Sum_probs=156.7
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
+.++++++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. +...... ..+...
T Consensus 23 l~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVGE-FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPE 98 (224)
T ss_pred hhhhhhhhhcCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCC
Confidence 778999999964 679999999999999999999999999999999999999999999987642 1111111 122344
Q ss_pred ccHHHHHHhc---CC-CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 447 MSALQYMIKE---YP-GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 447 ~~~~~~~~~~---~~-~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
.|+.+++... .. .. ..+.+.++++.+|+.+.. ++++.+|||||||||+|||+++.+|++|||||||+|||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 5676665321 11 11 123567888999997654 45678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 521 IDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 521 ~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
+..+.+.|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999988765 4799999999999999999999999999864
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=312.43 Aligned_cols=201 Identities=22% Similarity=0.332 Sum_probs=159.1
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEcCc------------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VPLDGMVRRHNH------------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p~~G~i~~~~~------------~~ 431 (582)
+|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+. ..
T Consensus 1 ~i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 4789999999974 57999999999999999999999999999999999995 699999987652 13
Q ss_pred EEEechhhhhhcCCcccHHHHHH---h---cCCC----C---hHHHHHHHHHhcCCCCccccCCCC-CCChhHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMI---K---EYPG----N---EEEKMRAAIGRFGLTGKAQVMPMK-NLSDGQRSRVVFA 497 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~---~---~~~~----~---~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~lA 497 (582)
++|++|.... ....+...+.. . .+.. . ..+.+.++++.+++.......++. +|||||||||+||
T Consensus 80 i~~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVE--IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchh--ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 7777776431 11112211111 0 0000 0 134567788999996433344554 7999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
||++.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence 9999999999999999999999999999987664 57999999999999887 8999999999996 58888754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=313.84 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=166.2
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~---------- 429 (582)
++|+++|+++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 2 NKFNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred CeEEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 36899999999964 6799999999999999999999999999999999999986 5999987542
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--CCC---C--hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--YPG---N--EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~--~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +. ..++.+++... ... . ..+++.++++.+++... ..+.++.+|||||+|||+||
T Consensus 81 ~~~~i~~~~q~~~--~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 81 LRIKVGMVFQKPN--PF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHhheeEEecCCC--cC-cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 23778888743 22 25777666421 111 1 12356677888887531 22456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++. ..|+.+++..
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 233 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV-EHDDTQVIFS 233 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHc
Confidence 9999999999999999999999999999999876 469999999999999999999999999997 4788877643
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=334.83 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=178.7
Q ss_pred CeEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC----CcEEEEcCc--------
Q 007982 365 PVLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL----DGMVRRHNH-------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~----~G~i~~~~~-------- 429 (582)
++|+++|+++.|... ..+++||||+|.+||++||||.|||||||+++.|.|++++. +|+|.+++.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 589999999999632 25899999999999999999999999999999999999987 799987653
Q ss_pred -------eeEEEechhhhhhcCCcccHHHHHHh----cCC---CChHHHHHHHHHhcCCCCcccc-CCCCCCChhHHHHH
Q 007982 430 -------LRIAQFHQHLAEKLDMDMSALQYMIK----EYP---GNEEEKMRAAIGRFGLTGKAQV-MPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -------~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqrv 494 (582)
..+++++|.+...+++-.++-..+.. ... ....+++.++|+.+||++.... +.+++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 35899999987778776666554432 121 1134568899999999876553 34589999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+||+||+.+|+|||+||||.+||+.+...|.++|+++ +.++|+||||+..+.++||||+||++|++++ .|+.+++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i 242 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEI 242 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHH
Confidence 9999999999999999999999999999999998765 6799999999999999999999999999987 8999988
Q ss_pred HHHH
Q 007982 571 KLHL 574 (582)
Q Consensus 571 ~~~~ 574 (582)
....
T Consensus 243 ~~~p 246 (539)
T COG1123 243 LSNP 246 (539)
T ss_pred Hhcc
Confidence 7643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=319.52 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=159.9
Q ss_pred ceEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 72 DIRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
+|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+.+|+.|.+. +++... .....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII----IDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE----ECCEECCcCcHHHH
Confidence 6999999999963 4699999999999999999999999999999999999988766432 222111 11111
Q ss_pred HHHhcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 AEILGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 ~~~~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+++ +.+ ......+++..... ..+......++.++++.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 122222 221 11122333322111 2344455678899999999974 56899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++ ..||+|++|++|+++. .|+.+++.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999988654 67999999999999 4899999999999964 57776654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=315.09 Aligned_cols=207 Identities=25% Similarity=0.357 Sum_probs=158.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF----LGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEE----ECCEEhHHCCHHHHhhh
Confidence 58999999999998999999999999999999999999999999999999888765432 222111 11111112
Q ss_pred hcc--ccCC---CcchHHHHHHHH------HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 149 LGA--QEDG---GGEQLERVYERL------EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l------~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+++ +... .....+++.... ..........++.++++.+|+.. ..++++.+|||||+|||+|||||+.+
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHHHHHHHhcC
Confidence 221 2111 112222221110 00111234556888999999964 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|++|||||||++||+.++..+.++|+++ +.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 225 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEV 225 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHh
Confidence 9999999999999999999999998764 579999999999999999999999999997 45666554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=316.95 Aligned_cols=207 Identities=22% Similarity=0.299 Sum_probs=158.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL----LDAQPLESWSSKAFARK 86 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE----ECCEehhhCCHHHHhhh
Confidence 69999999999988999999999999999999999999999999999999888766432 222111 11111122
Q ss_pred hcc--ccCC---CcchHHHHHHHHHc------CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 149 LGA--QEDG---GGEQLERVYERLEA------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l~~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+++ +... .....+++...... ........++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 322 2111 11222333211000 011233567889999999964 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|+||||||||++||+.++..+.++|.++ +.|||+|||+++++..+||++++|++|+++ ..|+.+++
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAEL 235 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHh
Confidence 9999999999999999999999988654 679999999999999999999999999996 45665544
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=317.80 Aligned_cols=203 Identities=19% Similarity=0.252 Sum_probs=165.7
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~--------- 429 (582)
.++|+++|+++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 22 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 568999999999964 579999999999999999999999999999999999997 69999987542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc---CCCCh----HHHHHHHHHhcCC----CCccccCCCCCCChhHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE---YPGNE----EEKMRAAIGRFGL----TGKAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~gl----~~~~~~~~~~~LSgGqkqrv 494 (582)
..++|++|... +. ..++.+++... ..... .+.+.++++.+++ .... ..++.+|||||||||
T Consensus 101 ~~~~~~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPN--PF-PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCc--cc-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHH
Confidence 24788888753 22 24777766421 11111 2335666777754 2222 356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+..++..
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~ 255 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIFS 255 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHc
Confidence 9999999999999999999999999999999998876 479999999999999999999999999997 4788877643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=316.39 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=158.8
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH-----
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL----- 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~----- 140 (582)
.+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+ ++.|. +.+++...
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~----i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE----ILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE----EEECCEEcccccc
Confidence 47999999999998889999999999999999999999999999999999975 23333 22222111
Q ss_pred HHHHHHHHhc--cccCC--CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHH
Q 007982 141 KLEKEAEILG--AQEDG--GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 141 ~~~~~~~~~~--~~~~~--~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~L 210 (582)
........++ ++... .....+++..... ..+......++.++++.+++.. ...++++.+|||||+|||+|
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 0111112222 22211 1122333321111 1233444567889999999742 34578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++||+++++..+||++++|++|+++. .|+.+++.
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIF 243 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999999999975 46666554
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=310.76 Aligned_cols=197 Identities=25% Similarity=0.407 Sum_probs=151.4
Q ss_pred eEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HH
Q 007982 73 IRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KL 142 (582)
Q Consensus 73 i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~ 142 (582)
|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~----~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL----FNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEEhhhcCHhHH
Confidence 789999999974 5799999999999999999999999999999999999988766432 221111 00
Q ss_pred HHHH-HHhcc--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 143 EKEA-EILGA--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 143 ~~~~-~~~~~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
.... ..+++ +... .....+++... +..........++.++++.+|+.+ ..++++.+|||||||||+|||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHH
Confidence 0111 12222 2211 11233333221 112333344567889999999974 56889999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||++++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999999999999998754 5799999999999965 8999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=312.84 Aligned_cols=207 Identities=23% Similarity=0.335 Sum_probs=154.7
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeeeeechHHHH---HHHHH-H
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAVISCDEERL---KLEKE-A 146 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~i~~~~~~~---~~~~~-~ 146 (582)
|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+. +++.|.+ .+++... ..... .
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i----~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI----LFKGQDLLELEPDERAR 76 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE----EECCEecCCCCHHHhhc
Confidence 57899999999889999999999999999999999999999999999984 4554433 2222111 00011 1
Q ss_pred HHhc--cccCCC---cchHHHHHHHHH---c------CChhHHHHHHHHHHHhCCCChhhhhccCC-CCChhHHHHHHHH
Q 007982 147 EILG--AQEDGG---GEQLERVYERLE---A------LDASTAEKRAAEILYGLGFNKTMQAKKTR-DFSGGWRMRIALA 211 (582)
Q Consensus 147 ~~~~--~~~~~~---~~~~~~~~~~l~---~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~-~LSGGqrqRv~LA 211 (582)
..++ ++.... ....+.+..... . .+......++.++++.+|+.....++++. +|||||||||+||
T Consensus 77 ~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 77 AGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred cceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence 1122 122111 112222211111 0 12223346788999999997445567776 5999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhh-cCeEEEEeCCeEEEEcCChhHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV-CTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||++++|++|+++ +.|+++++
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELA 232 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHh
Confidence 9999999999999999999999999999999876 57999999999999998 8999999999996 45666543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=346.50 Aligned_cols=201 Identities=22% Similarity=0.298 Sum_probs=166.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
+|+++|+++.|++ ..+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|...+. ..+++
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 6899999999964 56999999999999999999999999999999999999999999986442 12567
Q ss_pred echhhhhhc-C-----CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 435 FHQHLAEKL-D-----MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 435 ~~q~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
++|.....+ . ...++.+++.. .....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQD--EVKDPARCEQLAQQFGITALL-DRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhccc--chhHHHHHHHHHHHcCCHhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 777542111 0 12344444321 112345688899999997654 46779999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||+|||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++|+++ +.|+++++.
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 223 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA-ETGEREEIL 223 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999876 579999999999999999999999999996 578887654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=304.84 Aligned_cols=185 Identities=27% Similarity=0.391 Sum_probs=157.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEec
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFH 436 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~ 436 (582)
|+++|+++.|++ +.+|+++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 478999999964 67999999999999999999999999999999999999999999986542 1467777
Q ss_pred hhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 516 (582)
|... +....++.+++.........+++.++++.+|+.+.. ++++.+||||||||++||||++.+|++|||||||+||
T Consensus 80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 7642 334567777764322222456788999999998654 4567899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEE
Q 007982 517 DIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 517 D~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
|+.++..+.+.|.++ +.|+|+||||......+|++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999765 679999999999999999999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=314.18 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=166.0
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-----CcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-----DGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-----~G~i~~~~~---------- 429 (582)
++|+++|+++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 47999999999964 57999999999999999999999999999999999999985 788865431
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc-----C-CCCh-HHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE-----Y-PGNE-EEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~-~~~~-~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +.. .++.+++... . +..+ .+.+.++++.+++... ...+++.+|||||+|||+|
T Consensus 85 ~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 85 RLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 13677777643 222 5777666421 1 1111 3456788899987431 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeC-----CeEEEEcCCH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCEN-----QAVTRWEGDI 567 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~-----G~i~~~~g~~ 567 (582)
||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++ |+++ ..|++
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~ 240 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLT 240 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCH
Confidence 99999999999999999999999999999988763 67999999999999999999999999 9996 57888
Q ss_pred HHHHH
Q 007982 568 MDFKL 572 (582)
Q Consensus 568 ~~~~~ 572 (582)
+++.+
T Consensus 241 ~~~~~ 245 (261)
T PRK14258 241 KKIFN 245 (261)
T ss_pred HHHHh
Confidence 88754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=313.16 Aligned_cols=180 Identities=28% Similarity=0.414 Sum_probs=148.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEechhhhhhcCCcccH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFHQHLAEKLDMDMSA 449 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~~~~~~~ 449 (582)
+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|.. ..+....++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-cccCCCCcH
Confidence 57999999999999999999999999999999999999999999987543 1467765321 123344566
Q ss_pred HHHHHh--c-CC--CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 007982 450 LQYMIK--E-YP--GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 450 ~~~~~~--~-~~--~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 523 (582)
.+++.. . .. .. ..+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 665421 1 11 11 234567889999997654 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 524 LAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 524 l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
+.+.|.++ +.|||+||||++++..+||++++|++|++.
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 99999875 469999999999999999999999999986
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=319.25 Aligned_cols=209 Identities=22% Similarity=0.324 Sum_probs=162.2
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ 147 (582)
+|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|+.|.+. +++... .......
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL----IRGEPITKENIREVRK 78 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----ECCEECCcCCHHHHHh
Confidence 689999999996 46799999999999999999999999999999999999888766432 221110 1111112
Q ss_pred Hhc--cccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 148 ILG--AQED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 148 ~~~--~~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.++ ++.. ......+++..... ..+......++.++++.+|+.+ ..++.+.+||||||||++|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred heEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 222 2221 11122333321111 2344445567899999999974 5688999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+|||||||++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++ +.|+++++..
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 227 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIFL 227 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHhc
Confidence 99999999999999999999988754 679999999999999999999999999997 4577777653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=315.14 Aligned_cols=211 Identities=23% Similarity=0.369 Sum_probs=160.0
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechH-----------HHH
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDE-----------ERL 140 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~-----------~~~ 140 (582)
|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+... ..+.. ...
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 578999999998899999999999999999999999999999999999998876643210 01100 000
Q ss_pred HHHHHHHHhcc--ccCC---CcchHHHHHHH-H--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDG---GGEQLERVYER-L--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~---~~~~~~~~~~~-l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
........+++ +... .....+++... . ...........+.++++.+|+.+ ..++.+.+|||||+|||+|||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHHHHHHHHH
Confidence 00111122221 2111 12233333221 1 12233445567889999999974 568899999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|++|||||||++||+.++..+.++|+++ +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999988754 679999999999999999999999999997 457766654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=314.73 Aligned_cols=208 Identities=19% Similarity=0.271 Sum_probs=158.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~ 147 (582)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ..... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL----LRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEE----ECCEECCCCCHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999888766432 211110 00011 11
Q ss_pred Hhc--cccCC---CcchHHHHHHHHH---------c------CC--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHH
Q 007982 148 ILG--AQEDG---GGEQLERVYERLE---------A------LD--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR 205 (582)
Q Consensus 148 ~~~--~~~~~---~~~~~~~~~~~l~---------~------~~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 205 (582)
.+. ++... .....+++..... . .. ......++.++++.+|+.. ..++++.+||||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 159 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-HANRQAGNLAYGQQ 159 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-hhhCChhhCCHHHH
Confidence 122 22211 1122333321100 0 00 0123356788899999964 57899999999999
Q ss_pred HHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCCh
Q 007982 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281 (582)
Q Consensus 206 qRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 281 (582)
|||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||++||+++++..+||++++|++|+++ +.|+.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCH
Confidence 9999999999999999999999999999999999998754 679999999999999999999999999997 45666
Q ss_pred hHHH
Q 007982 282 DQYV 285 (582)
Q Consensus 282 ~~~~ 285 (582)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 6543
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=308.07 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=159.7
Q ss_pred EEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 6899999999743 47999999999999999999999999999999999999999999987652 24788
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHccCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
++|... + +..++.+++.. +......++.++++.+++.+... ..++..|||||+|||+|||+|+.+|
T Consensus 83 ~~q~~~--l-~~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 83 IPQDPV--L-FSGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred ECCCCc--c-ccchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 888753 2 23477776642 11223445666677777654321 2356899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
++|||||||++||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|++.. .|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE-FDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe-cCC
Confidence 999999999999999999999999875 4689999999999975 99999999999964 443
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=317.60 Aligned_cols=209 Identities=23% Similarity=0.325 Sum_probs=161.4
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~ 145 (582)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+++.|.+. +++... .....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~----~~g~~~~~~~~~~~~~ 76 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL----IKGEPIKYDKKSLLEV 76 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE----ECCEECccccchHHHH
Confidence 478999999997 46799999999999999999999999999999999999988766432 222111 11111
Q ss_pred HHHhc--cccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 AEILG--AQED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 ~~~~~--~~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...++ ++.. ......+++..... .........++.++++.+|+.+ ..++++.+|||||+||++|||||+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 22232 2221 11122333321111 1233344567889999999974 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|++|||||||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++. .|+++++..
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 226 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVFS 226 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999999865 5799999999999999999999999999974 577776543
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=307.44 Aligned_cols=191 Identities=27% Similarity=0.388 Sum_probs=159.0
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++|+++.|+++ +.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|...+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 47899999999642 57999999999999999999999999999999999999999999987542
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc---CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE---YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
..++|++|+.. +....++.+++... ... . ....+.++++.+|+.+... .++.+||+||+||++|||+|+
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-YYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHh
Confidence 24788888753 33345676655321 111 1 2345788999999976554 456899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++.+ .+||+|++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999888764 57999999999965 79999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=310.53 Aligned_cols=190 Identities=23% Similarity=0.339 Sum_probs=156.2
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC----CCcEEEEcCc---------eeEEEechhhhhhcCCccc
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP----LDGMVRRHNH---------LRIAQFHQHLAEKLDMDMS 448 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p----~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~ 448 (582)
+++|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+. ..++|++|.....+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 8999987652 2588898885323333455
Q ss_pred HHHHHHhc---C--CC-ChHHHHHHHHHhcCCCC--ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 449 ALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTG--KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 449 ~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~--~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
+.+++... . .. ...+++.++++.+|+.+ ...+.++.+|||||||||+||||++.+|+||||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 55543211 1 11 12345788999999973 22345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 521 IDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 521 ~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+..+.+.|.++ +.|||++|||++++..+||++++|++|++. ..|+.+++..
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 215 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999888764 569999999999999999999999999996 5788887753
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=344.75 Aligned_cols=194 Identities=27% Similarity=0.351 Sum_probs=166.1
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
|+|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 3 ~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPG-VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECC-EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 68999999999964 67999999999999999999999999999999999999999999987542 248
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC----CC-----ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY----PG-----NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
+|++|... +....++.+++.... .. ...+++.++++.+|+.... ++++.+|||||||||+|||||+.+
T Consensus 82 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-CCchhhCCHHHHHHHHHHHHHHhC
Confidence 89998753 344567777765321 01 1134678899999997544 456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999988765 5799999999999999999999999999864
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=332.30 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=167.7
Q ss_pred CCCeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhh
Q 007982 363 PPPVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA 440 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~ 440 (582)
..++++++|+++.|++. +++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|...+... +..+..
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~- 94 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS- 94 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc-
Confidence 35789999999999753 4699999999999999999999999999999999999999999999876431 111111
Q ss_pred hhcCCcccHHHHHHhc--CCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 441 EKLDMDMSALQYMIKE--YPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 441 ~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
.+....++.+++... +... ..+.+.++++.+++.... ++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 95 -~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-d~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 95 -GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-YQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred -ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 122345676665321 1111 123466789999997654 45678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 515 HLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|++. +.|+++++....
T Consensus 173 gLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv-~~G~~~el~~~~ 234 (549)
T PRK13545 173 VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK-EYGDIKEVVDHY 234 (549)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhhH
Confidence 99999999999998765 579999999999999999999999999997 478887766543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=314.71 Aligned_cols=210 Identities=23% Similarity=0.308 Sum_probs=159.0
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----CCceeeeeechHHHH-----
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-----MSSLEAVISCDEERL----- 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-----~~~~~~~i~~~~~~~----- 140 (582)
.+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+++ .|. +.+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~----i~~~g~~i~~~~~ 78 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE----VRLFGRNIYSPDV 78 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE----EEECCEEcccccc
Confidence 3699999999999889999999999999999999999999999999999998763 333 22222111
Q ss_pred HHHHHHHHhcc--ccCC---CcchHHHHHHHH--HcC--ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHH
Q 007982 141 KLEKEAEILGA--QEDG---GGEQLERVYERL--EAL--DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~---~~~~~~~~~~~l--~~~--~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv 208 (582)
........+++ +... .....+++.... ... .......++.++++.+|+.. ...++++.+|||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 00111112222 2211 112333332211 111 22344556888999998742 235788999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||++|||++++..+||+|++|++|+++. .|+.+++.
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 4799999999999999999999999999974 56665543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=308.63 Aligned_cols=187 Identities=24% Similarity=0.359 Sum_probs=160.4
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------eeEEEechhhhhhcCCc
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~~~~~~q~~~~~~~~~ 446 (582)
-++|+||+|+.||+..|+|-||||||||+|+|.++++|++|+|...+. .+++.++|.|. +.+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccc
Confidence 468999999999999999999999999999999999999999987653 25788899886 5677
Q ss_pred ccHHHHHHhcC-----CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 447 MSALQYMIKEY-----PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 447 ~~~~~~~~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
.|++++..... ++. .++++.++|+.+||.++..++| .+||||+||||.|||||+.+|+|||+|||+|+|||--
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 88888875432 222 3457899999999998876655 8999999999999999999999999999999999977
Q ss_pred HHHHHHHH----HhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 521 IDSLAEAL----NEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 521 ~~~l~~~l----~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+..+.+.| .++++|||+||||++++.++.|||.+|++|+|+. -|++++...
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ-~Gtp~eIl~ 254 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ-VGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE-eCCHHHHHc
Confidence 66665554 4568999999999999999999999999999975 787776543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=313.94 Aligned_cols=213 Identities=18% Similarity=0.291 Sum_probs=159.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHH-----HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~-----~~~~~ 145 (582)
+|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+++.+ ...|.+.+++... .....
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 79999999999988899999999999999999999999999999999999876310 0022232222111 01111
Q ss_pred HHHhcc--ccCC--CcchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGA--QEDG--GGEQLERVYERLE--A-LDASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~--~~~~--~~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++ +... .....+++..... . ......+.++.++++.+++. ....++++.+|||||||||+|||||+
T Consensus 87 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred hhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 122322 2211 1233333322211 1 12234456788889999873 13457889999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999876 4799999999999999999999999999974 56665543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=345.75 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=168.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCc------------ee
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNH------------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~------------~~ 431 (582)
+|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+. ..
T Consensus 1 ~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGG-VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCC-eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 4789999999964 6799999999999999999999999999999999999987 7999987652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC--C--C------ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY--P--G------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~--~--~------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
++|++|... +....++.+++.... . . ...+++.++++.+|+.....++++.+|||||||||+|||||+
T Consensus 80 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 889999753 344567777664321 0 0 113457889999999765444667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|+..++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA-TKDMSTM 228 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee-ecCcccC
Confidence 999999999999999999999999988764 5799999999999999999999999999964 5655443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=311.19 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=156.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHH-HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEK-EAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~-~~~ 147 (582)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+++.|.+. +++... .... ...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~----~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV----FDGKDITDWQTAKIMRE 80 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE----ECCEecCCCCHHHHHHh
Confidence 69999999999988999999999999999999999999999999999999988766432 222111 0000 111
Q ss_pred Hhcc--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhC-CCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 148 ILGA--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGL-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
.+++ +... .....+++...............+.++++.+ ++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 2222 1111 1122333321111112223345567777877 4653 456789999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++ +.|++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 999999999999999999998754 679999999999999999999999999996 457766553
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=305.85 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=151.7
Q ss_pred EEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------eeEE
Q 007982 369 FVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRIA 433 (582)
Q Consensus 369 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~~~ 433 (582)
++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4689999964 67999999999999999999999999999999999999999999977542 1477
Q ss_pred EechhhhhhcCCcccHHHHHHhc--C---CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE--Y---PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|... +....++.+++... . .. ...+++.++++.+|+..... +++.+|||||+||++|||||+.+|++|
T Consensus 80 ~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 8887743 33446777665421 1 11 12456788999999976544 566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEE
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
||||||+|||+.++..+.+.|+++ +.|||+||||++++ .+||++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999875 57999999999977 589999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=316.62 Aligned_cols=209 Identities=22% Similarity=0.354 Sum_probs=158.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~-----~ 141 (582)
.|+++||++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.++ +.|.+ .+++... .
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I----~~~g~~i~~~~~~ 94 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI----TLDGEDIYDPRLD 94 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE----EECCEECcccccc
Confidence 69999999999988999999999999999999999999999999999998764 44432 2222111 0
Q ss_pred HHHHHHHhcc--ccCCC--cchHHHHHHHH--HcC--ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHH
Q 007982 142 LEKEAEILGA--QEDGG--GEQLERVYERL--EAL--DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~~--~~~~~~~~~~l--~~~--~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~L 210 (582)
.......+++ +.... ....+++.... ... .......++.++++.+|+.. ...++++.+|||||||||+|
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 1111122222 22111 13333332211 111 22334567888999999953 23567899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 250 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKMF 250 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999999999974 46665543
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=284.63 Aligned_cols=213 Identities=27% Similarity=0.428 Sum_probs=168.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee---ee-----------echH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA---VI-----------SCDE 137 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~---~i-----------~~~~ 137 (582)
.|+++|+.|+||...+|++||++-+.|+++.|||.|||||||||+||+-+..|+.|.+.. .+ ..+.
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 589999999999999999999999999999999999999999999999888887664321 01 1111
Q ss_pred HHH-HHHHHHHHhccccCCC---cchHHHHHHH---HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 138 ERL-KLEKEAEILGAQEDGG---GEQLERVYER---LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
..+ +++.....++ |..+. .+.++++.+. .-.....++.+++..+|..+|+.+. .+.+|..|||||+||++|
T Consensus 86 ~q~~r~Rs~L~mVF-Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQQQR~aI 163 (256)
T COG4598 86 RQLQRLRTRLGMVF-QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQQQRVAI 163 (256)
T ss_pred HHHHHHHHHhhHhh-hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-hhcCccccCchHHHHHHH
Confidence 111 1222222222 22111 2334444432 1245677888899999999999764 578999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHh
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQT 287 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 287 (582)
||||+.+|+++|+|||||+|||+-.-+++..++++ ++|+++|||.+.|+..+++++++|++|.|. ..|++++.+.+
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~qvf~n 242 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQVFGN 242 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHHHhcC
Confidence 99999999999999999999999999988887765 899999999999999999999999999884 67888877653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=321.93 Aligned_cols=213 Identities=23% Similarity=0.356 Sum_probs=161.2
Q ss_pred cceEEeeeEEEEC----CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 71 RDIRIESLSVTFH----GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 71 ~~i~v~nls~~y~----~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.+|+++||++.|+ ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+++. ...|.+.+++..+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~-~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG-RIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC-CCCeEEEECCEECCcCCHH
Confidence 3799999999995 3579999999999999999999999999999999999998741 0122333332211
Q ss_pred HHHHHH-HHhc--cccCC-----CcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCCh--hhhhccCCCCChhHHHH
Q 007982 141 KLEKEA-EILG--AQEDG-----GGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNK--TMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 141 ~~~~~~-~~~~--~~~~~-----~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqR 207 (582)
...... ..++ +|... .......+.+.+. .....+...++.++|+.+||.+ ...++++++|||||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 111111 1222 22221 1122233333332 2334455678899999999964 23467999999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
|+|||||+.+|++||+||||++||+.++..+.++|+++ +.|+|+||||++++..+||+|++|.+|+|+. .|+.++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive-~g~~~~ 248 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME-YGNARD 248 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999999999999988654 6799999999999999999999999999974 577666
Q ss_pred HH
Q 007982 284 YV 285 (582)
Q Consensus 284 ~~ 285 (582)
+.
T Consensus 249 i~ 250 (330)
T PRK09473 249 VF 250 (330)
T ss_pred HH
Confidence 54
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=308.87 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=153.3
Q ss_pred cceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHHHH-HHHH
Q 007982 71 RDIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEERL-KLEK 144 (582)
Q Consensus 71 ~~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~~~-~~~~ 144 (582)
.+|+++||+++|++ ..+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+... ........ ....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 37999999999975 369999999999999999999999999999999999998876643210 01110000 0000
Q ss_pred -HHHHhcc--ccCC---CcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 145 -EAEILGA--QEDG---GGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 145 -~~~~~~~--~~~~---~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
....+++ +... .....+++... .........++++.++++.+|+.+ ..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0112221 2211 12233333221 112233445677899999999974 5678999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
+|++|||||||++||+.++.++.++|+++ +.|||++|||++++. .||++++|++|+++
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999998654 579999999999986 49999999999985
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=311.35 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=166.3
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC--C---CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV--P---LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~--p---~~G~i~~~~~--------- 429 (582)
.++|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|++. | ++|+|.+.+.
T Consensus 4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 46899999999996 4679999999999999999999999999999999999976 3 4899976542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc--C-C--C--ChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE--Y-P--G--NEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVV 495 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~-~--~--~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~ 495 (582)
..++|++|... +. ..++.+++... . . . ...+.+.++++.+++... ..+.++.+|||||+|||+
T Consensus 83 ~~~~~~i~~~~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPN--PF-PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCc--cC-cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 23788888753 22 24777766421 1 1 1 113356778888887431 124567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+++.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.+
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 237 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIFE 237 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHHh
Confidence 999999999999999999999999999999998876 479999999999999999999999999997 5788887753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=312.82 Aligned_cols=203 Identities=20% Similarity=0.274 Sum_probs=166.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc----------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH---------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~---------- 429 (582)
++|+++|+++.|++ ..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 47899999999964 5799999999999999999999999999999999999985 4899987542
Q ss_pred ---eeEEEechhhhhhcCCcccHHHHHHhc------CCCCh-HHHHHHHHHhcCCCC---ccccCCCCCCChhHHHHHHH
Q 007982 430 ---LRIAQFHQHLAEKLDMDMSALQYMIKE------YPGNE-EEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 430 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqrv~l 496 (582)
..++|++|... +. ..++.+++... ++... .+.+.++++.+|+.. .....++.+|||||+|||+|
T Consensus 85 ~~~~~i~~v~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPN--PF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEecccc--cC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 14788888753 22 36777776421 11111 345678889998842 12345668999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEe-----CCeEEEEcCCHHH
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCE-----NQAVTRWEGDIMD 569 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~~ 569 (582)
||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++ ..|++.+
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~ 240 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQ 240 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999998 59987 4788888
Q ss_pred HHH
Q 007982 570 FKL 572 (582)
Q Consensus 570 ~~~ 572 (582)
+.+
T Consensus 241 ~~~ 243 (259)
T PRK14260 241 IFS 243 (259)
T ss_pred Hhc
Confidence 753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=340.80 Aligned_cols=203 Identities=27% Similarity=0.345 Sum_probs=172.1
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
..|+|+||+|+||.. .++|+|+||+|++||++|||||||+||||++++|..+|.|++|+|..++. .+
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 469999999999843 46999999999999999999999999999999999999999999998763 35
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~ 501 (582)
++++.|.+. -+.-|+.+++....+..+.++++.+.+..+-.++... ....+||||||||++|||||+
T Consensus 544 Ig~V~QEPv---LFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPV---LFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeeccce---eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 888888763 3677899999877666666677766665544322221 124699999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|.||||||.||+||.++...+.++|.+. +.|||+|.|.+..+. -||+|+|+++|+|.+ .|+.+++.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeEEe-cccHHHHhh
Confidence 999999999999999999999999999865 589999999999994 699999999999986 777776544
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=356.36 Aligned_cols=201 Identities=29% Similarity=0.422 Sum_probs=175.2
Q ss_pred eEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|..++. ..++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5899999999964 467999999999999999999999999999999999999999999988763 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|+.. -+..|+.+++....+ .+.+++.++++..|+.+.....| ...||||||||++||||++++
T Consensus 531 ~v~Q~~~---lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 531 VVLQNGR---LMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEccCCc---cCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999864 256788998875544 56677888999888865443322 357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.+.+.+.+.|++++.|+|+|||+++.+. .||+|++|++|++++ +|+.+++.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~-~G~~~~Ll~ 673 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRVVQ-QGTYDELMA 673 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999899999999999985 599999999999975 899887653
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=314.58 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=158.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||+++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW----LDGEHIQHYASKEVARR 82 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE----ECCEEhhhCCHHHHhhh
Confidence 79999999999998999999999999999999999999999999999999988766432 222111 01111112
Q ss_pred hcc--ccCC---CcchHHHHHHH-HHc---C--ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 149 LGA--QEDG---GGEQLERVYER-LEA---L--DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~-l~~---~--~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+++ +... .....+++... ... . .......++.++++.+|+.+ ..++++.+||||||||++|||||+.+
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCChHHHHHHHHHHHHhcC
Confidence 222 2211 11222222111 000 0 11223457889999999964 56899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++. .|..+++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEI 231 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999998764 5799999999999999999999999999974 5665544
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=315.32 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=159.7
Q ss_pred CccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHH----HHH
Q 007982 69 LSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERL----KLE 143 (582)
Q Consensus 69 ~~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~----~~~ 143 (582)
.+.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|..+ ...|.+.+++... ...
T Consensus 18 ~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred cCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 34579999999999999999999999999999999999999999999999999875210 0122233222111 001
Q ss_pred HHHHHhcc--ccCC--CcchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHH
Q 007982 144 KEAEILGA--QEDG--GGEQLERVYERLE--A-LDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 144 ~~~~~~~~--~~~~--~~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAra 213 (582)
.....+.+ +... .....+++..... . ........++.++++.+++.. ...++.+.+|||||+|||+||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 11122222 2111 1222333321111 1 123334456778899999863 23567899999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+.+|+||||||||++||+.++.+|.+.|+++ ..|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 250 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLF 250 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999876 4799999999999999999999999999974 46666554
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=315.76 Aligned_cols=210 Identities=20% Similarity=0.317 Sum_probs=156.9
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH-----
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL----- 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~----- 140 (582)
.+|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+ ++.|. +.+++...
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~----i~~~g~~i~~~~~ 95 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGE----ILYEGLNILDSNI 95 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceE----EEECCEEcccccc
Confidence 37999999999998899999999999999999999999999999999999753 34343 22222111
Q ss_pred HHHHHHHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~L 210 (582)
........+++ +.... ....+++...+. .. ........+.++++.+++.. ...++++.+||||||||++|
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 01111122222 22111 123333322211 11 11223456778888888742 34578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 251 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQIF 251 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 4799999999999999999999999999975 46666543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=315.61 Aligned_cols=207 Identities=26% Similarity=0.312 Sum_probs=158.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~----~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR----LNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE----ECCEEcccCCHHHhhhh
Confidence 68999999999998999999999999999999999999999999999999888766432 211110 00111112
Q ss_pred hc--cccCC---CcchHHHHHHHHHc--CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh------
Q 007982 149 LG--AQEDG---GGEQLERVYERLEA--LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF------ 215 (582)
Q Consensus 149 ~~--~~~~~---~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~------ 215 (582)
++ ++... .....+++...... ........++.++++.+|+.+ ..++++.+|||||||||+|||||+
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 22 12211 11233333221111 112234456889999999964 568899999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
.+|++|||||||++||+.++..+.++|+++ +.|||++|||++++..+||+|++|++|+++ ..|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEV 228 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHH
Confidence 599999999999999999999999988754 579999999999999999999999999997 45666554
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=318.77 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=169.9
Q ss_pred cCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc---
Q 007982 358 DVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH--- 429 (582)
Q Consensus 358 ~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~--- 429 (582)
+++...+++|.++|+++.|++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 37 ~~~~~~~~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 37 DYEFDGDAKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ccccCCCceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 333445678999999999964 679999999999999999999999999999999999986 68999987542
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHhcC-----------------CC--ChHHHHHHHHHhcCCCC---c
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIKEY-----------------PG--NEEEKMRAAIGRFGLTG---K 477 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----------------~~--~~~~~~~~~l~~~gl~~---~ 477 (582)
..++|++|... +. ..++.+++.... .. ...+.+.++++.+++.. .
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 192 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPN--PF-PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND 192 (305)
T ss_pred cccccHHHHhhceEEEccCCc--cc-cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH
Confidence 24788888753 22 246766654211 00 11345778889998842 1
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEE-EE
Q 007982 478 AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEI-WV 554 (582)
Q Consensus 478 ~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i-~~ 554 (582)
....++.+|||||+|||+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++ ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 224556899999999999999999999999999999999999999999999876 468999999999999999996 57
Q ss_pred EeCCeEEEEcCCHHHHHH
Q 007982 555 CENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 555 l~~G~i~~~~g~~~~~~~ 572 (582)
|++|+++ +.|+++++..
T Consensus 273 l~~G~i~-~~g~~~~~~~ 289 (305)
T PRK14264 273 LTGGELV-EYDDTDKIFE 289 (305)
T ss_pred ecCCEEE-EeCCHHHHHh
Confidence 8999997 4788887754
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=316.53 Aligned_cols=207 Identities=26% Similarity=0.381 Sum_probs=158.4
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHH
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~ 146 (582)
+|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ......
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL----VSGIDTGDFSKLQGIR 76 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE----ECCEECCccccHHHHH
Confidence 478999999995 56799999999999999999999999999999999999888766432 221111 001111
Q ss_pred HHhc--cccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILG--AQEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~--~~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..++ ++... .....+++..... ..+.....+++.++++.+|+.. ..++++.+|||||+|||+|||||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2222 22211 1122233321111 2334455667889999999964 568899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+||||||||++||+.++..+.+.|+++ +.|||++|||++++. .||++++|++|+++ +.|+.+++.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999998764 679999999999995 69999999999997 457766654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=285.82 Aligned_cols=144 Identities=43% Similarity=0.724 Sum_probs=135.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
|+++|+++.|++ .++++++||++.+||+++|+||||||||||+++|+|+++|++|+|...+...++|++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 468999999964 5799999999999999999999999999999999999999999999887656777665
Q ss_pred ccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 007982 447 MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526 (582)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 526 (582)
||+||+||++|||+++.+|++|||||||++||+.++..+.+
T Consensus 71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 527 ALNEWDGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 527 ~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
.+++++.|||++||+++++..+||++++|++|+
T Consensus 112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999988899999999999999999999999885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=295.44 Aligned_cols=160 Identities=26% Similarity=0.427 Sum_probs=136.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEec
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFH 436 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~ 436 (582)
|+++|+++.|++ .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999964 57999999999999999999999999999999999999999999987653 1356666
Q ss_pred hhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 516 (582)
|... +....++.+++. |||||+|||+|||||+.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 80 EEPS--LYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred cCCc--cccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 6532 222233333321 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 517 DIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 517 D~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
|+.++..+.+.|+++ +.|||++|||.+++..+||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999876 46899999999999999999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=310.20 Aligned_cols=208 Identities=23% Similarity=0.315 Sum_probs=153.3
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechHHHHHHHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~ 151 (582)
|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+... ....... ........+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP-PHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC-HHHHHHhCeEE
Confidence 578999999998899999999999999999999999999999999999998876643211 0110000 00001112222
Q ss_pred --ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCC-CChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 152 --QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLG-FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lg-l~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+... .....+++......... .....+.++++.++ +. ...++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPR-RSRKIPDEIYELFPVLK-EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 2111 11222333221111111 12234566777776 43 35688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 226 PTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||++||+.++.++.++|.++ +.|+|++||+++++..+||++++|++|+++. .|+.+++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~ 219 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDEL 219 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHc
Confidence 99999999999999998764 5799999999999999999999999999964 5665543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=298.80 Aligned_cols=165 Identities=24% Similarity=0.356 Sum_probs=138.7
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++| +|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3589999999988 899999999999999999999999999999999999999999987652 13
Q ss_pred EEEechhhh-hhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 432 IAQFHQHLA-EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 432 ~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
++|++|... ..+....++.+++.... .|||||+|||+||||++.+|++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence 566666532 11222334444432110 09999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 511 EPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
|||++||+.++..+.+.|.++ +.|+|++|||++++..+||++++|++|++
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999998875 57999999999999999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=307.41 Aligned_cols=192 Identities=27% Similarity=0.437 Sum_probs=157.9
Q ss_pred CCeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e
Q 007982 364 PPVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~ 430 (582)
.++|+++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5789999999999642 36999999999999999999999999999999999999999999987653 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcCCCC-hH--------HHHHHHHHhc--CCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPGN-EE--------EKMRAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
.++|++|... + +..++.+++....... .. ..+.++++.+ |+..... .++.+|||||+|||+|||+
T Consensus 89 ~i~~~~q~~~--l-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 89 KVSLVGQEPV--L-FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hEEEEecccH--H-HhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHH
Confidence 4788888753 2 2347777664322111 10 1135667778 7766544 4568999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
|+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999876 369999999999996 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=331.76 Aligned_cols=203 Identities=28% Similarity=0.389 Sum_probs=175.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
.-++++|++|.|++++++++|+||++++|+.+||||+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 319 ~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred ceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 34667799999987778999999999999999999999999999999999999999999998763 2488
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc-----CCC----CCCChhHHHHHHHHHHHccCC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV-----MPM----KNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~----~~LSgGqkqrv~lAral~~~p 504 (582)
+++|++. -+.-|+.+++....+..+++++.+++++.|+.+.... ..+ ..|||||+|||++|||++.++
T Consensus 399 ~v~Q~p~---lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 399 WVSQNPY---LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeCCCCc---cccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999864 3567888888766565667889999999888665442 222 459999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+++|+||||+|||.++...+.+.|.+. ++|||+|||++..+. -||+|++|++|++++ .|..+++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~-~~D~I~vld~G~l~~-~g~~~~L~~ 543 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA-DADRIVVLDNGRLVE-QGTHEELSE 543 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh-cCCEEEEecCCceec-cCCHHHHhh
Confidence 999999999999999999999999886 579999999999995 599999999999986 888888743
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=291.54 Aligned_cols=158 Identities=25% Similarity=0.355 Sum_probs=132.2
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
|+++|+++.|++ .++++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+. .+...
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~-~~~~~----------- 67 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK-EVSFA----------- 67 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-ECCcC-----------
Confidence 478999999964 57999999999999999999999999999999999999999999987653 11100
Q ss_pred ccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 007982 447 MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526 (582)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 526 (582)
...+ . .-..+++ +.+|||||+|||+||||++.+|++|||||||++||+.++..+.+
T Consensus 68 -~~~~------------~---~~~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 68 -SPRD------------A---RRAGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred -CHHH------------H---HhcCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 0000 0 0001111 01299999999999999999999999999999999999999999
Q ss_pred HHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 527 ALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 527 ~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
.|+++ +.|||++|||++++.++||++++|++|++.
T Consensus 124 ~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99876 579999999999999999999999999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=311.54 Aligned_cols=209 Identities=21% Similarity=0.345 Sum_probs=158.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~-----~ 141 (582)
.|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.++ +.|. +.+++... .
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~----I~~~g~~~~~~~~~ 79 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGE----VLLDGEDLYGPGVD 79 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceE----EEECCEeccccccC
Confidence 69999999999988999999999999999999999999999999999998753 3332 33322111 0
Q ss_pred HHHHHHHhcc--ccCC---CcchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG---GGEQLERVYERLE--A-LDASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~---~~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~L 210 (582)
.......+++ +... .....+++..... . ......++++.++++.+|+. ....++++.+|||||||||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 0111112222 2111 1233333322221 1 12334456788899999984 134578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEe------CCeEEEEcCChh
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQ------NKQLKFYTGNFD 282 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~ 282 (582)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|+ +|+++. .|+.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~ 238 (258)
T PRK14241 160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTE 238 (258)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHH
Confidence 99999999999999999999999999999999876 4799999999999999999999997 799974 56766
Q ss_pred HHH
Q 007982 283 QYV 285 (582)
Q Consensus 283 ~~~ 285 (582)
++.
T Consensus 239 ~~~ 241 (258)
T PRK14241 239 KIF 241 (258)
T ss_pred HHH
Confidence 554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=310.82 Aligned_cols=209 Identities=22% Similarity=0.345 Sum_probs=157.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC---CCCCceeeeeechHHHH---HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA---SDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~---~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+ ++.|. +.+++... .....
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~----i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL----VEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceE----EEECCEecccCCHHHH
Confidence 5899999999998899999999999999999999999999999999999864 34443 22222111 01111
Q ss_pred HHHhcc--ccCCC--cchHHHHHHH--HHcC--ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGA--QEDGG--GEQLERVYER--LEAL--DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~--~~~~~--~~~~~~~~~~--l~~~--~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++ +.... ....+++... .... .....+.++.++++.+++.. ...++++.+|||||||||+|||||
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 122322 22111 1222332211 1111 12334556788999999952 235778999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++.++.+.|.++ +.|+|+|||+++++..+||++++|++|+++. .|+.+++.
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 229 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEFF 229 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999875 6799999999999999999999999999975 46655543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=308.98 Aligned_cols=199 Identities=24% Similarity=0.398 Sum_probs=153.4
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------H
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~ 141 (582)
+|+++||++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV----IFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEEcCcCCHHH
Confidence 6999999999974 579999999999999999999999999999999999988875543 2222111 0
Q ss_pred HHHHH-HHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 142 LEKEA-EILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 142 ~~~~~-~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
..... ..+++ +... .....+++.... ........+.++.++++.+|+.+ ..++++.+|||||||||+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHH
Confidence 00011 12222 2211 112333332211 12333445567899999999974 4678999999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+ |++++|++|+++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99999999999999999999999999998764 57999999999999875 6999999999964
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=310.57 Aligned_cols=209 Identities=21% Similarity=0.328 Sum_probs=157.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC---CCC--CCCceeeeeechHHHHH-----
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI---EAS--DMSSLEAVISCDEERLK----- 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~---~~~--~~~~~~~~i~~~~~~~~----- 141 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+ .++ +.|. +.+++....
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~----i~~~g~~~~~~~~~ 78 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE----IRIDGRNIYDKGVQ 78 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceE----EEECCEeccccccc
Confidence 79999999999988999999999999999999999999999999999986 333 2332 222221110
Q ss_pred HHHHHHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +.... ....+++..... .. .....+..+.++++.+|+.+ ...++++.+|||||||||+||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 1111122222 21111 122333322111 11 12234567888999999853 245788999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~ 233 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999999999876 479999999999999999999999999997 456766654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=312.81 Aligned_cols=211 Identities=19% Similarity=0.300 Sum_probs=159.1
Q ss_pred ccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCCceeeeeechHHHH----
Q 007982 70 SRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA--S---DMSSLEAVISCDEERL---- 140 (582)
Q Consensus 70 ~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~---~~~~~~~~i~~~~~~~---- 140 (582)
+.+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+ + +.|. +.+++...
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~----i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGE----MNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceE----EEECCEEccccc
Confidence 347999999999998899999999999999999999999999999999999875 2 2332 22222111
Q ss_pred -HHHHHHHHhcc--ccCC--CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHH
Q 007982 141 -KLEKEAEILGA--QEDG--GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 141 -~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~ 209 (582)
........+++ +... .....+++..... .. .......++.++++.+++.. ...++++.+|||||||||+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred cCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 01111122222 2211 1123333321111 11 22334556788899998852 2457889999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+.+|++|||||||++||+.++..+.++|+++ +.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 242 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMF 242 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999999999999999876 5799999999999999999999999999974 57776654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=313.36 Aligned_cols=198 Identities=24% Similarity=0.359 Sum_probs=166.5
Q ss_pred EEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++|+++.|++ ..++|+|+||+|.+||+++|+||||||||||+++|+|+++ ++|+|.+.+. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 789999999963 3579999999999999999999999999999999999997 7899988662 24889
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCC-----------CChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN-----------LSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgGqkqrv~lAral~~~ 503 (582)
++|.+. + +..|+.+++.. +.....+++.++++.+|+.......| .. |||||+|||+||||++.+
T Consensus 82 v~q~~~--l-f~~tv~~nl~~-~~~~~~~~~~~~l~~~gL~~~~~~~p-~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQKVF--I-FSGTFRKNLDP-YGKWSDEEIWKVAEEVGLKSVIEQFP-GQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCCcc--c-chhhHHHHhhh-ccCCCHHHHHHHHHHcCCHHHHHhCc-ccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 998753 2 23577777642 22223467788899999976554433 44 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||+.+...+.+.|.+. +.|||+||||++++.. ||||++|++|+++. .|+++++..
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 225 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQ-YDSIQKLLN 225 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEee-cCCHHHHhh
Confidence 9999999999999999999999999864 5799999999999865 99999999999975 688887755
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=349.76 Aligned_cols=201 Identities=23% Similarity=0.359 Sum_probs=171.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
-|+++||+|.|.+++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|..++. ..++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4999999987755568999999999999999999999999999999999999 99999998763 25899
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~p 504 (582)
++|++. -++.|+.+++....+..+.+++.++++..++.++... .....||||||||++||||++++|
T Consensus 428 v~Q~~~---LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQ---LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCc---CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999863 3567899998765454566777888877766432221 123579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||++||.++...+.+.|.++ +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e-~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQ-QGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEee-cCCHHHHHh
Confidence 999999999999999999999999886 579999999999885 599999999999975 899888764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=357.14 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=174.9
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++||+|+|++ ++++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35899999999975 367999999999999999999999999999999999999999999998752 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. -++.|+.+++....+..+.+++.++++..|+.+.....| ...||||||||++||||+++
T Consensus 556 ~~v~Q~~~---lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 556 AMVDQDIF---LFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred eEEecCCh---hhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 99999863 346788898865444456677888888877754332222 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||++||+++...+.+.|.+.+.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~D~Iivl~~G~i~~-~G~~~~Ll~ 700 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DCDEIIVLERGKVVQ-RGTHEELWA 700 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEeCCEEEE-ecCHHHHHH
Confidence 99999999999999999999999999988899999999999985 599999999999975 899888764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=330.00 Aligned_cols=198 Identities=26% Similarity=0.361 Sum_probs=149.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-eechH-HHHHHHHHH-HHhcc--ccCC---Cc
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-ISCDE-ERLKLEKEA-EILGA--QEDG---GG 157 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i~~~~-~~~~~~~~~-~~~~~--~~~~---~~ 157 (582)
.+|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|.+... ..+.. ....+.... ..+++ |... ..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999998876643210 01100 000111111 12222 2211 12
Q ss_pred chHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHH
Q 007982 158 EQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235 (582)
Q Consensus 158 ~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~ 235 (582)
...+++.... ..+.......++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 3344443222 22344455677899999999975 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 236 VWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 236 ~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
..+.+.|.++ ++|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~ 253 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEIL 253 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHH
Confidence 9999988654 679999999999999999999999999997 456666554
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=310.52 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=159.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH---HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL---KLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~---~~~ 143 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.++ +.|. +.+++... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~----i~~~g~~i~~~~~~ 78 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGE----VYLDGQDIFKMDVI 78 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceE----EEECCEECCcCCHH
Confidence 58999999999988999999999999999999999999999999999999764 3332 22222111 011
Q ss_pred HHHHHhcc--ccCC---CcchHHHHHHHHH--cC--ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 144 KEAEILGA--QEDG---GGEQLERVYERLE--AL--DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 144 ~~~~~~~~--~~~~---~~~~~~~~~~~l~--~~--~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.....+++ +... .....+++..... .. ......+.+.++++.+|+.. ...++++.+|||||||||+||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 11122322 2211 1233333322111 11 22344567889999999853 245788999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++.++.+.|+++ +.|+|++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF 233 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence 9999999999999999999999999999999875 579999999999999999999999999996 457766554
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=309.26 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=154.0
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (582)
+.++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++....... ....+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i----~~~g~~~~~~~--~~~~~- 95 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV----TVRGRVSSLLG--LGGGF- 95 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEEchhhc--ccccC-
Confidence 788999999999999999999999999999999999999999999999988875543 22222111000 00111
Q ss_pred cCCCcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCC
Q 007982 153 EDGGGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230 (582)
Q Consensus 153 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~L 230 (582)
.+.....+++.... ........+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 96 -~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 96 -NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred -CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11222333332211 12233444567888999999964 567899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 231 DLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 231 D~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|+.++..+.+.|.++ +.|||+|||+++++..+||++++|++|+++.
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999988765 5799999999999999999999999999863
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=343.00 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=167.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEcC----------------
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VPLDGMVRRHN---------------- 428 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p~~G~i~~~~---------------- 428 (582)
|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999996 467999999999999999999999999999999999997 79999997641
Q ss_pred ----------------------------ceeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCC
Q 007982 429 ----------------------------HLRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGL 474 (582)
Q Consensus 429 ----------------------------~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl 474 (582)
...++|++|... .+....++.+++... ++.. ..+++.++++.+||
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 013678887522 122345666665421 1111 23467889999999
Q ss_pred CCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcC
Q 007982 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 475 ~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d 550 (582)
.+.. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||
T Consensus 159 ~~~~-~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 159 SHRI-THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hhhh-hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 7654 4567899999999999999999999999999999999999999998887654 5799999999999999999
Q ss_pred EEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 551 EIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 551 ~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
+|++|++|+++ +.|+++++....
T Consensus 238 ~i~~l~~G~i~-~~g~~~~~~~~~ 260 (520)
T TIGR03269 238 KAIWLENGEIK-EEGTPDEVVAVF 260 (520)
T ss_pred EEEEEeCCEEe-eecCHHHHHHHH
Confidence 99999999997 478988886654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=315.62 Aligned_cols=207 Identities=23% Similarity=0.336 Sum_probs=159.8
Q ss_pred ceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
+|+++||++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++... ......
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~----~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT----VGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE----ECCEECCcCcHHHHh
Confidence 6999999999974 5799999999999999999999999999999999999988766432 222111 011111
Q ss_pred HHhcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ +.. ......+++..... .........++.++++.+||.. ..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 22322 211 01123333322111 2234445667899999999974 578899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+||||||||++||+.++..+.++|+++ +.|||++|||++++. .||+|++|++|+++ +.|+.+++.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999998764 579999999999997 59999999999996 457766554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=319.07 Aligned_cols=205 Identities=20% Similarity=0.309 Sum_probs=168.4
Q ss_pred CCeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc--------
Q 007982 364 PPVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH-------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~-------- 429 (582)
..+|+++|++++|.+ ..++|+|+||+|.+|+++||+||||||||||+++|+|++. |++|+|...+.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999963 3579999999999999999999999999999999999986 57999876432
Q ss_pred -----eeEEEechhhhhhcCCcccHHHHHHhc--CCCC-hH----HHHHHHHHhcCCCCc---cccCCCCCCChhHHHHH
Q 007982 430 -----LRIAQFHQHLAEKLDMDMSALQYMIKE--YPGN-EE----EKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv 494 (582)
..++|++|.+. .+..|+.+++... +... .. +.+..+++.+++... ....++.+|||||||||
T Consensus 158 ~~~lr~~i~~v~q~~~---~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 158 SLELRTRIGMVFQKPT---PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred hHhhhccEEEEecCCc---cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 24888888753 2346777777521 1111 11 235677888887421 12345689999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||||++.+|+||||||||++||+.+...+.+.|+.+ +.|||+|||+++++.++||+|++|++|++++ .|++.++..
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~~l~~ 313 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETKTIFI 313 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999999999999998876 4799999999999999999999999999975 799998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=305.95 Aligned_cols=194 Identities=22% Similarity=0.308 Sum_probs=160.9
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC---CCCcEEEEcCc--------ee
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV---PLDGMVRRHNH--------LR 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~---p~~G~i~~~~~--------~~ 431 (582)
++.++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|...+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 56799999999764 579999999999999999999999999999999999999 99999987652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc----CCC--C---hHHHHHH-HHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE----YPG--N---EEEKMRA-AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~----~~~--~---~~~~~~~-~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
++|++|... +....|+.+++... .+. . ....+.+ .++.+++..... +.+.+|||||+|||+|||+|+
T Consensus 83 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDDI--LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCCc--cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCcCHHHHHHHHHHHHHH
Confidence 788888743 33445777766421 111 1 1123444 789999876543 566899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCH-HHHHhhcCEEEEEeCCeEEE
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDF-RLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~ 562 (582)
.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++ +++..+||++++|++|+++.
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999998765 56999999998 68889999999999999964
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=310.13 Aligned_cols=204 Identities=23% Similarity=0.255 Sum_probs=166.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~--------- 429 (582)
.++|+++|++++|++ +.+|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 467999999999964 5799999999999999999999999999999999999975 7999987431
Q ss_pred ------eeEEEechhhhhhcCCcccHHHHHHhcC--C---C--ChHHHHHHHHHhcCCCC---ccccCCCCCCChhHHHH
Q 007982 430 ------LRIAQFHQHLAEKLDMDMSALQYMIKEY--P---G--NEEEKMRAAIGRFGLTG---KAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 430 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~~l~~~gl~~---~~~~~~~~~LSgGqkqr 493 (582)
..++|++|... +.. .++.+++.... . . ...+.+.++++.+++.. .....++.+|||||+||
T Consensus 93 ~~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 93 DPIEVRMRISMVFQKPN--PFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred CHHHHhccEEEEccCCc--CCc-chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 23778887743 222 36666664211 1 1 11345677888887742 12235678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|++.. .|+.+++.
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 248 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE-FGATDTIF 248 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999998876 4689999999999999999999999999974 68887765
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
.
T Consensus 249 ~ 249 (265)
T PRK14252 249 I 249 (265)
T ss_pred h
Confidence 3
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=312.54 Aligned_cols=218 Identities=21% Similarity=0.286 Sum_probs=157.0
Q ss_pred CCCccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHH-----
Q 007982 67 HPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERL----- 140 (582)
Q Consensus 67 ~~~~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~----- 140 (582)
.|...+|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+..+..+ ...|.+.+++...
T Consensus 15 ~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 15 NPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 3445589999999999988999999999999999999999999999999999998642100 0012233322211
Q ss_pred HHHHHHHHhcc--ccCCC--cchHHHHHHHHHcC-ChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDGG--GEQLERVYERLEAL-DASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
........+++ +.... ....+++....... .....+..+.++++.+++. ....++++.+|||||||||+|||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 174 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIAR 174 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHH
Confidence 01111122222 21111 12222222111100 0112234566778888763 13457889999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEe---------CCeEEEEcCCh
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQ---------NKQLKFYTGNF 281 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~---------~G~i~~~~g~~ 281 (582)
||+.+|++|||||||++||+.++..+.++|.++ +.|||++|||++++..+||++++|+ +|+++. .|+.
T Consensus 175 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~ 253 (274)
T PRK14265 175 AIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPT 253 (274)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eCCH
Confidence 999999999999999999999999999999876 4799999999999999999999998 799974 5776
Q ss_pred hHHH
Q 007982 282 DQYV 285 (582)
Q Consensus 282 ~~~~ 285 (582)
+++.
T Consensus 254 ~~~~ 257 (274)
T PRK14265 254 EQMF 257 (274)
T ss_pred HHHH
Confidence 6654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=312.36 Aligned_cols=212 Identities=20% Similarity=0.275 Sum_probs=160.2
Q ss_pred CccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHHH--
Q 007982 69 LSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERLK-- 141 (582)
Q Consensus 69 ~~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~~-- 141 (582)
...+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ +.|. +.+++....
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~----i~~~g~~~~~~ 92 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ----ILYRGIDINRK 92 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE----EEECCEEcccc
Confidence 34579999999999989999999999999999999999999999999999998753 4333 222221110
Q ss_pred ---HHHHHHHhcc--ccCC--CcchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHH
Q 007982 142 ---LEKEAEILGA--QEDG--GGEQLERVYERLE--A-LDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 142 ---~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv 208 (582)
.......+++ +... .....+++..... . ......+.++.++++.+++.. ...++++.+|||||+|||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 1111122222 2111 1123333322111 1 122344567888999998842 346789999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|++|+++. .|+.+++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 250 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNIF 250 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999999999876 4699999999999999999999999999974 56666543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=316.34 Aligned_cols=206 Identities=27% Similarity=0.354 Sum_probs=158.3
Q ss_pred EEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHHH-H
Q 007982 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEKE-A 146 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~-~ 146 (582)
.++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... ..... .
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i----~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV----LIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE----EECCEEccccChhhhhhhhc
Confidence 56799999999999999999999999999999999999999999999998876543 2222111 00000 1
Q ss_pred HHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 EILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
..+++ +... .....+++.... ..........++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 11221 2111 112333332211 12233344567889999999974 5688999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+.++..+.++|.++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 249 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEIL 249 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999998765 5799999999999999999999999999974 46666553
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=311.34 Aligned_cols=206 Identities=24% Similarity=0.324 Sum_probs=158.5
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHHh
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEIL 149 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~ 149 (582)
|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ........+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD----LAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE----ECCEEcccCCHHHHhhhe
Confidence 6899999999999999999999999999999999999999999999999988766432 222111 011111122
Q ss_pred cc--ccCC---CcchHHHHHHHH-H-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 150 GA--QEDG---GGEQLERVYERL-E-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~~~l-~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
++ +... .....+++.... . .........++.++++.+|+. ...++++.+|||||+|||+|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 21 2211 122333332110 0 011223345788999999996 4578899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
++|||||||++||+.++..+.+.|+++ +.|||++|||++++..+||+|++|++|+++ ..|+.+++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 224 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREV 224 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHh
Confidence 999999999999999999999998765 579999999999999999999999999997 45666554
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=327.36 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=173.7
Q ss_pred eEEEEEEEEEecCCc-eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------eEE
Q 007982 366 VLQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------RIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~-~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------~~~ 433 (582)
.++++||+|+|++.. ++|+|+||++.+||.+||+|++|||||||+.+|+|.++|++|+|+..+.. .+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999998654 79999999999999999999999999999999999999999999987632 133
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
.+.|... -+.-|..+++....+..+.+++.++++.+||.+.....| ...|||||+||++|||+|+++
T Consensus 416 vl~Qr~h---lF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRVH---LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccchH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 3444322 134577788776666677888999999999976554443 468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+++||||||.|||+.+...+.+.|.+. ++|+|+|||++..++ .||||+||++|++++ +|++.++..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeeee-cCCHHhhhc
Confidence 9999999999999999999999998764 689999999999995 699999999999975 999998876
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=324.10 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=180.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
+.-|+|+||+|.|++++++|+++||+|++||.+||+|+|||||||++|+|.+++. .+|+|..+|. ..|
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 3459999999999887779999999999999999999999999999999999999 9999998764 248
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
|++||+- .-++.|++.++..+.+....+++.++.+++|+.+...+.| ...|||||||||+||||++.
T Consensus 428 g~VPQd~---~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 428 GVVPQDS---VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred eEeCCcc---cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 9999974 3467899999987777778889999999999976444333 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+|+++|||||+||.++...+.+.+.+. ++|+|+|-||++++. -||+|+++++|++.+ .|+.+++..
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~v~e-~gth~ell~ 574 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK-DFDKIIVLDNGTVKE-YGTHSELLA 574 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh-cCCEEEEEECCeeEE-eccHHHHhh
Confidence 99999999999999999999999999874 689999999999995 599999999999976 789988877
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=309.35 Aligned_cols=181 Identities=27% Similarity=0.326 Sum_probs=150.6
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce------eEEEechhhhhhcCCcccHHHHHHhc
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------RIAQFHQHLAEKLDMDMSALQYMIKE 456 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~ 456 (582)
|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. ..+|++|... +....++.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999999876531 2467888643 33446777766431
Q ss_pred ----CCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007982 457 ----YPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528 (582)
Q Consensus 457 ----~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 528 (582)
.... ..+.+.++++.+|+.... ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAA-DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHH-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 1111 133578899999998644 4567899999999999999999999999999999999999999999988
Q ss_pred Hhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCH
Q 007982 529 NEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDI 567 (582)
Q Consensus 529 ~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 567 (582)
.++ +.|||+||||++++.++||+|++|++|+++. .|+.
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~ 199 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN-IGQI 199 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec-ccCc
Confidence 764 5799999999999999999999999999964 4554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=309.62 Aligned_cols=208 Identities=21% Similarity=0.356 Sum_probs=156.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~-----~ 141 (582)
.|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ +.| .+.+++... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G----~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG----EVLLDGQDIYKSDID 78 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce----EEEECCEEccccccc
Confidence 58999999999988999999999999999999999999999999999998642 233 233222111 0
Q ss_pred HHHHHHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +.... ....+++..... .. .....++++.++++.+++.. ...++++.+|||||||||+||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 1111122222 22111 123333322111 11 12344567888899988742 245788999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDL 232 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999876 4799999999999999999999999999975 4665554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=311.33 Aligned_cols=208 Identities=19% Similarity=0.263 Sum_probs=156.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC----CCCceeeeeechHHHHHHHHH-H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS----DMSSLEAVISCDEERLKLEKE-A 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~----~~~~~~~~i~~~~~~~~~~~~-~ 146 (582)
+|+++|++++| ++.+|+|+||+|++|++++|+|+||||||||+++|+|+.++ +.|.+ .+++........ .
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i----~~~g~~i~~~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV----LLDGKPVAPCALRG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE----EECCeecccccccc
Confidence 69999999999 67899999999999999999999999999999999999887 54432 222221110000 1
Q ss_pred HHhc--cccCC--C---cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChh--hhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 147 EILG--AQEDG--G---GEQLERVYERLEALDASTAEKRAAEILYGLGFNKT--MQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 147 ~~~~--~~~~~--~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
..++ ++... . ......+...+........+.++.++++.+++... ..++++.+|||||+|||+|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 1122 22211 0 11112222211111112234678899999999642 45789999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..+.+.|+++ +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 229 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLF 229 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 9999999999999999999999988764 579999999999999999999999999996 456666553
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=304.94 Aligned_cols=197 Identities=20% Similarity=0.330 Sum_probs=149.4
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 151 (582)
|+++|++++|+++.. |+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++.... .......+++
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~----~~g~~~~~~~~~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL----INGVDVTAAPPADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEEcCcCCHhHccEEE
Confidence 578999999987653 99999999999999999999999999999999988766432 2221110 0000112222
Q ss_pred --ccCC---CcchHHHHHHHHH-cCC-hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 152 --QEDG---GGEQLERVYERLE-ALD-ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~l~-~~~-~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+... .....+++..... ... ....+.++.++++.+|+.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 2211 1122233221111 011 1234557889999999974 567899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|||++||+.++..+.++|+++ +.|+|+||||++++..+||++++|++|+++.
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999999999998764 5799999999999999999999999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=313.55 Aligned_cols=207 Identities=23% Similarity=0.289 Sum_probs=159.7
Q ss_pred ceEEeeeEEEECC------eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH----
Q 007982 72 DIRIESLSVTFHG------HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK---- 141 (582)
Q Consensus 72 ~i~v~nls~~y~~------~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~---- 141 (582)
+|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+.+++.|.+. +++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~----i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY----VDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEecccccc
Confidence 7999999999963 4699999999999999999999999999999999999988766432 2221110
Q ss_pred HHHHHHHhcc--ccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
.......+++ +.+. .....+++..... .........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHH
Confidence 0111122222 2211 0112222221111 2234455677899999999964 5788999999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||++++|++|+++. .|+.+++.
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999999998764 5799999999999986 99999999999974 57776654
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=310.02 Aligned_cols=209 Identities=20% Similarity=0.349 Sum_probs=157.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA--S---DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~---~~~~~~~~i~~~~~~~-----~ 141 (582)
.|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+ + +.|. +.+++... .
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~----v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK----ILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceE----EEECCEEcccccCC
Confidence 5899999999998899999999999999999999999999999999999974 3 2332 22222111 0
Q ss_pred HHHHHHHhc--cccCC---CcchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHH
Q 007982 142 LEKEAEILG--AQEDG---GGEQLERVYERLE--A-LDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~~~~~~~--~~~~~---~~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~L 210 (582)
.......++ ++... .....+++..... . ......+.++.++++.+++.. ...++.+.+|||||||||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 011111222 22211 1122333321111 1 223344567888999999853 23567899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKIF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999876 5799999999999999999999999999974 46665543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=301.32 Aligned_cols=186 Identities=25% Similarity=0.350 Sum_probs=155.2
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--------eEEEech
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--------RIAQFHQ 437 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--------~~~~~~q 437 (582)
+|+++|+++.|++ ..+++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .++|++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 6899999999964 579999999999999999999999999999999999999999999876531 3566665
Q ss_pred hhhhhcCCcccHHHHHHhc--CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 438 HLAEKLDMDMSALQYMIKE--YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
... +....++.+++... ......+.+.++++.+|+.... +.++.+|||||+||++||||++.+|++|||||||+|
T Consensus 81 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 432 33446777765321 1122345688999999997644 567789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeC
Q 007982 516 LDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCEN 557 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~ 557 (582)
||+.++..+.+.|+++ +.|||+||||.+++.. |+++.++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999998865 6799999999999976 89888743
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=297.17 Aligned_cols=171 Identities=31% Similarity=0.497 Sum_probs=141.0
Q ss_pred EEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH---HHHHHHHhc
Q 007982 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK---LEKEAEILG 150 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 150 (582)
+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++.... .......++
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v----~~~g~~~~~~~~~~~~~~i~ 76 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI----LLDGKDLASLSPKELARKIA 76 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE----EECCEECCcCCHHHHHHHHh
Confidence 46899999998889999999999999999999999999999999999998876643 22221110 000000000
Q ss_pred cccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCC
Q 007982 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230 (582)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~L 230 (582)
.+.++++.+|+.+ ..++++.+|||||+||++|||||+.+|++|||||||++|
T Consensus 77 ---------------------------~~~q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 128 (180)
T cd03214 77 ---------------------------YVPQALELLGLAH-LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128 (180)
T ss_pred ---------------------------HHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 0111788889974 467889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 231 DLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 231 D~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|+.++.++.+.|.++ +.|+|++||+++++..+||++++|++|+++.
T Consensus 129 D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 129 DIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999998765 5699999999999999999999999999863
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=307.93 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=169.2
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-----CCcEEEEcCc---------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-----LDGMVRRHNH--------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-----~~G~i~~~~~--------- 429 (582)
++++.++++++.|+ +..+|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 57799999999996 46799999999999999999999999999999999999986 7999987542
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhcC-----CCChHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKEY-----PGNEEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... + +..++.+++.... .....+.+.++++.+++... ....++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPN--P-FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCc--c-ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 13788888753 2 2467777764321 11123567889999998542 12346689999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEe--------CCeEEEEcCCH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCE--------NQAVTRWEGDI 567 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~--------~G~i~~~~g~~ 567 (582)
|||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++.++||+|++|+ +|+++. .|+.
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~ 240 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPT 240 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCH
Confidence 9999999999999999999999999999999876 4689999999999999999999996 899975 7888
Q ss_pred HHHHH
Q 007982 568 MDFKL 572 (582)
Q Consensus 568 ~~~~~ 572 (582)
+++.+
T Consensus 241 ~~~~~ 245 (261)
T PRK14263 241 AQIFQ 245 (261)
T ss_pred HHHHh
Confidence 87754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=311.47 Aligned_cols=208 Identities=19% Similarity=0.314 Sum_probs=154.2
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH-----
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL----- 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~----- 140 (582)
.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+ ++.|. +.+++...
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~----v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR----VLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE----EEECCEEcccccC
Confidence 37999999999999899999999999999999999999999999999999875 34333 22222111
Q ss_pred HHHHHHHHhccccCC-CcchHHHHHHHHH------cCChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHH
Q 007982 141 KLEKEAEILGAQEDG-GGEQLERVYERLE------ALDASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~------~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~L 210 (582)
........+++.++. .... ..+.+.+. ... ...+.++.++++.+++. ....++++.+|||||||||+|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 011111223221111 1111 12333221 111 22345677788888763 234578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeC-----------CeEEEE
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQN-----------KQLKFY 277 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~-----------G~i~~~ 277 (582)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++ |+++ .
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-~ 244 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-E 244 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-E
Confidence 99999999999999999999999999999999876 46999999999999999999999996 4455 4
Q ss_pred cCChhHHH
Q 007982 278 TGNFDQYV 285 (582)
Q Consensus 278 ~g~~~~~~ 285 (582)
.|+..++.
T Consensus 245 ~~~~~~~~ 252 (269)
T PRK14259 245 FNETKKIF 252 (269)
T ss_pred eCCHHHHH
Confidence 56665554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=309.54 Aligned_cols=208 Identities=24% Similarity=0.368 Sum_probs=156.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~-----~ 141 (582)
+|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+ ++.|. +.+++... .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~----v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGE----IKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceE----EEECCEEcccccch
Confidence 6899999999998899999999999999999999999999999999999975 23332 22222111 1
Q ss_pred HHHHHHHhcc--ccCC--CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG--GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +... .....+++..... .. ........+.++++.+++. ....++++.+|||||+||++||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 1111112222 2111 1123333321111 11 1223345678889999983 1335778999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999876 5799999999999999999999999999975 4555544
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=299.74 Aligned_cols=200 Identities=27% Similarity=0.417 Sum_probs=167.1
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------e
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------L 430 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~ 430 (582)
.+++|+++|+++.|. ++++|+|+||+|++||.++|+|||||||||||++++|.+.|++|.+...++ .
T Consensus 28 ~~~li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 457899999999996 478999999999999999999999999999999999999999999875443 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc-------CC----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE-------YP----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
+||++...+...+....++.+.+... +. ..+.+++..+++.+|+.+. .++|+.+||-||||||.||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCchhhcCHhHHHHHHHHHH
Confidence 46776655554444444555544322 11 1234568889999999874 467899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcC
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEWD-----GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEG 565 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 565 (582)
|+.+|.+|||||||+|||...++.+.+.|.+.. .++|+|||..+++..+.++++.+++|+++ +.|
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~-~~g 255 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV-AQG 255 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee-ecc
Confidence 999999999999999999999999999888762 46999999999999999999999999996 344
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=293.16 Aligned_cols=163 Identities=31% Similarity=0.459 Sum_probs=137.6
Q ss_pred EEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEe
Q 007982 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQF 435 (582)
Q Consensus 367 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~ 435 (582)
|+++|+++.|++. .++++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999753 36999999999999999999999999999999999999999999987653 124555
Q ss_pred chhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
+|.+. +. ..++.+++ +..|||||+|||+||||++.+|++|||||||++
T Consensus 81 ~q~~~--~~-~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 81 NQRPY--LF-DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred ccCCe--ee-cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 55431 11 11222221 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEE
Q 007982 516 LDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 562 (582)
||+.+++.+.+.|.++ +.|||++|||++++. .||++++|++|++..
T Consensus 129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 9999999999999876 578999999999996 699999999999863
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=293.24 Aligned_cols=158 Identities=32% Similarity=0.512 Sum_probs=132.9
Q ss_pred EEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++|++++|++. .++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999642 46999999999999999999999999999999999999999999987652 12455
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
++|... +. ..++.+++ |||||+|||+|||||+.+|++|||||||+
T Consensus 81 ~~q~~~--~~-~~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 81 LPQDDE--LF-SGSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred ECCCCc--cc-cCcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 554431 11 11222221 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 515 HLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
+||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|++
T Consensus 126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 126 HLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 99999999999998765 46999999999998 58999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=303.80 Aligned_cols=199 Identities=25% Similarity=0.366 Sum_probs=148.5
Q ss_pred ceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
.|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~----~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL----LDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE----ECCEEhHHCCHHHHH
Confidence 4889999999975 5799999999999999999999999999999999999888766432 222111 011111
Q ss_pred HHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhcc-----------CCCCChhHHHHHHHHHHHh
Q 007982 147 EILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKK-----------TRDFSGGWRMRIALARALF 215 (582)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----------~~~LSGGqrqRv~LAraL~ 215 (582)
..+++..+........+.+.+...........+.++++.+++.+ ..++. +.+|||||||||+|||||+
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~ 156 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTD-FVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL 156 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHH-HHHhccccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 22322221111111234444321111111345667888888864 34444 4699999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++ .+||++++|++|+++.
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 9999999999999999999999999998763 6999999999987 6999999999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=308.38 Aligned_cols=200 Identities=27% Similarity=0.368 Sum_probs=154.0
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc-
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA- 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 151 (582)
|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++....... ...+.+
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i----~~~~~~~~~~~-~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI----IFDGHPWTRKD-LHKIGSL 75 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEeccccc-cccEEEE
Confidence 578999999998899999999999999999999999999999999999988876543 22221111000 111221
Q ss_pred -ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC
Q 007982 152 -QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227 (582)
Q Consensus 152 -~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt 227 (582)
+... .....+++......... .+.++.++++.+|+.+ ..++++.+|||||+||++|||||+.+|++|||||||
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGL--PDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCC--CHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 1111 11223333211111111 1346788999999975 568899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCCh
Q 007982 228 NHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 281 (582)
++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++. .|+.
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~ 208 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKI 208 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecCh
Confidence 999999999999999765 5699999999999999999999999999975 4544
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=307.96 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=154.2
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc--
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-- 456 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-- 456 (582)
.+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ++++.|.. .+....++.+++...
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~--~~~~~~tv~enl~~~~~ 111 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISA--GLSGQLTGIENIEFKML 111 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEeccc--CCCCCCcHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999998764 34444442 123345666665321
Q ss_pred ---CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-
Q 007982 457 ---YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW- 531 (582)
Q Consensus 457 ---~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 531 (582)
+... ..+.+..++..+++.... +.++.+|||||+|||+||||++.+|++|||||||+|||+.++..+.+.|.++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~ 190 (264)
T PRK13546 112 CMGFKRKEIKAMTPKIIEFSELGEFI-YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK 190 (264)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 1111 123355678888987654 4567899999999999999999999999999999999999999999988765
Q ss_pred --CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 532 --DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 532 --~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+.|||+||||++++..+||+|++|++|++. +.|+.+++...
T Consensus 191 ~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 233 (264)
T PRK13546 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK 233 (264)
T ss_pred HCCCEEEEEcCCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence 679999999999999999999999999997 57888776553
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=308.81 Aligned_cols=209 Identities=19% Similarity=0.286 Sum_probs=157.3
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL----- 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~----- 140 (582)
.+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.++ +.|. +.+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~----i~~~g~~i~~~~~ 78 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE----VLLDGKNIYDKDV 78 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccE----EEECCEecccccc
Confidence 378999999999988999999999999999999999999999999999998754 3332 22222111
Q ss_pred HHHHHHHHhcc--ccCC--CcchHHHHHHHH--HcC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDG--GGEQLERVYERL--EAL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~--~~~~~~~~~~~l--~~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~L 210 (582)
........+++ +... .....+++.... ... .......++.++++.+|+.. ...++++.+|||||||||+|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred cHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 00111122222 2211 122233332111 111 12334556788999998742 24578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||+.+|++|||||||++||+.++.++.+.|+++ +.|+|+|||+++++..+||++++|++|+++. .|+.++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE-FNKTEKI 233 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE-eCCHHHH
Confidence 99999999999999999999999999999999876 4799999999999999999999999999975 4665554
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=311.82 Aligned_cols=213 Identities=20% Similarity=0.340 Sum_probs=157.0
Q ss_pred CCccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH--
Q 007982 68 PLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL-- 140 (582)
Q Consensus 68 ~~~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~-- 140 (582)
|...+|+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+ ++.|. +.+++...
T Consensus 20 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~----i~~~g~~~~~ 95 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGK----ILYRDQNIFD 95 (271)
T ss_pred CCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCcee----EEECCEEccc
Confidence 34457999999999998889999999999999999999999999999999999875 34343 22222111
Q ss_pred ---HHHHHHHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHH
Q 007982 141 ---KLEKEAEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 141 ---~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqR 207 (582)
........+++ +.... ....+++..... .. +....+..+.++++.+++. ....++++.+||||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 01111122322 22111 122333321111 11 1122345567777777532 124578899999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+|||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~ 254 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKIF 254 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999999876 5799999999999999999999999999975 46665543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=311.90 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=161.6
Q ss_pred cccccCCCccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeech
Q 007982 62 GVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCD 136 (582)
Q Consensus 62 g~~~~~~~~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~ 136 (582)
||.-......+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.++ +.|. +.++
T Consensus 15 ~~~~~~~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~----i~i~ 90 (272)
T PRK14236 15 DVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGE----IRLD 90 (272)
T ss_pred cccccCCCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceE----EEEC
Confidence 444444445589999999999988999999999999999999999999999999999999763 3333 2222
Q ss_pred HHHH-----HHHHHHHHhc--cccCCC--cchHHHHHHHH--HcC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCC
Q 007982 137 EERL-----KLEKEAEILG--AQEDGG--GEQLERVYERL--EAL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFS 201 (582)
Q Consensus 137 ~~~~-----~~~~~~~~~~--~~~~~~--~~~~~~~~~~l--~~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LS 201 (582)
+... ........+. ++.... ....+++.... ... .....+.++.++++.+++.. ...++++.+||
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 170 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLS 170 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCC
Confidence 2111 0111111222 121111 12233332111 111 12223456788899998853 24578899999
Q ss_pred hhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcC
Q 007982 202 GGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTG 279 (582)
Q Consensus 202 GGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g 279 (582)
|||||||+|||||+.+|++|||||||++||+.++.++.++|+++ +.|+|++||+++++..+||++++|++|+++. .|
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g 249 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YG 249 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cC
Confidence 99999999999999999999999999999999999999999876 4799999999999999999999999999974 56
Q ss_pred ChhHHH
Q 007982 280 NFDQYV 285 (582)
Q Consensus 280 ~~~~~~ 285 (582)
+.+++.
T Consensus 250 ~~~~~~ 255 (272)
T PRK14236 250 DTDTLF 255 (272)
T ss_pred CHHHHh
Confidence 666543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=306.03 Aligned_cols=198 Identities=21% Similarity=0.304 Sum_probs=149.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+++.|.+. +++... ........
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL----FEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE----ECCEEcCcCCHHHHHhc
Confidence 69999999999988999999999999999999999999999999999999888766432 111110 01111122
Q ss_pred hcc--ccCCC--cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 149 LGA--QEDGG--GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 149 ~~~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+++ +.... ....+++............+.++.++++.+|+.....++++.+|||||+|||+|||||+.+|++||||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 222 22111 12222222111111111224567889999999644568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEe--CCeE
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQ--NKQL 274 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~--~G~i 274 (582)
|||++||+.++..+.++|.++ +.|||++|||++++. .||++++|+ .|++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM 217 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH
Confidence 999999999999999988764 579999999999996 699999996 4554
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=293.60 Aligned_cols=161 Identities=32% Similarity=0.450 Sum_probs=133.0
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-------------eEE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-------------RIA 433 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-------------~~~ 433 (582)
|+++|+++.|++ +++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|...+.. .++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 468999999964 679999999999999999999999999999999999999999999876531 233
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
|++|... +....++.+++. + .|||||+||++|||||+.+|++|||||||
T Consensus 80 ~~~q~~~--~~~~~t~~~~l~-------------------~----------~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 80 MVFQDFA--LFPHLTVLENIA-------------------L----------GLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred EEecCCc--cCCCCCHHHhee-------------------e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 4443321 111122222111 0 09999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 514 NHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+|||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999988764 5799999999999999999999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=291.48 Aligned_cols=210 Identities=26% Similarity=0.374 Sum_probs=165.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH---HHHHHHHH-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER---LKLEKEAE- 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~- 147 (582)
.+.++||.|+|+.+.+++++||+|++||++||+|||||||||.+.++.|+.+++.|.+ ..+... ........
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i----~ld~~diT~lPm~~RArl 79 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI----LLDDEDITKLPMHKRARL 79 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE----EECCcccccCChHHHhhc
Confidence 5889999999999999999999999999999999999999999999999999987653 222222 12222211
Q ss_pred Hhcc--ccCC---CcchHHHHHHHHHcC--Chh--HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 148 ILGA--QEDG---GGEQLERVYERLEAL--DAS--TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l~~~--~~~--~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
-+++ |... ..++.+++...++.. +.+ +.+.++.++|+.|++.+ ..+.+..+||||||+|+.|||||+.+|
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-lr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-LRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-HhcCcccccccchHHHHHHHHHHhcCC
Confidence 1222 2111 123334444433322 223 33345779999999975 678999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhh---cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHh
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKK---FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQT 287 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 287 (582)
+++|||||++|+||.+...+.++++. .+..|+++.|+..+...+|||.+++.+|++. ..|+++++..+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~n 229 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVNN 229 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhcC
Confidence 99999999999999998888777654 4779999999999999999999999999996 57898887653
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=308.12 Aligned_cols=212 Identities=21% Similarity=0.327 Sum_probs=156.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHH----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERL----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~----~~~~~~ 146 (582)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.+ ...|.+.+++... ......
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 68999999999988999999999999999999999999999999999998775310 0112222222111 011111
Q ss_pred HHhcc--ccCC--CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 147 EILGA--QEDG--GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 147 ~~~~~--~~~~--~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
..+++ +... .....+++..... .. .....++++.++++.+++.. ...++++.+|||||+|||+|||||+.
T Consensus 83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 22222 2211 1122333321111 11 12234456778888888742 24577899999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|+||||||||++||+.++.++.++|+++ +.|||+|||+++++..+||++++|++|+++. .|+.+++
T Consensus 163 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 163 EPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999876 4799999999999999999999999999974 4665544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=298.71 Aligned_cols=185 Identities=26% Similarity=0.399 Sum_probs=150.2
Q ss_pred EEEEEEEEEecCC----ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhh
Q 007982 367 LQFVEVTFGYTPD----NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK 442 (582)
Q Consensus 367 l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 442 (582)
|+++||+++|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|...+ .++|++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~-- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW-- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--
Confidence 4789999999753 3699999999999999999999999999999999999999999999877 6899999864
Q ss_pred cCCcccHHHHHHhcCCCChHHHHHHHHHhcCC-----------CCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 443 LDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL-----------TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
+ +..|+.+++..... ...+...++++.+++ .... ..++.+||+||||||+|||+|+.+|++|||||
T Consensus 77 l-~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDE 153 (204)
T cd03250 77 I-QNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDD 153 (204)
T ss_pred h-ccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2 24578887754211 112233344444433 2222 23467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 512 PTNHLDIETIDSLAE-ALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~-~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
||++||+.+.+.+.+ ++..+ +.|||++||+++++.. ||++++|++|+
T Consensus 154 P~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred ccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999998887 45533 4799999999999987 99999999884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=301.50 Aligned_cols=192 Identities=27% Similarity=0.385 Sum_probs=147.6
Q ss_pred eeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-------HHHHHHHHh
Q 007982 77 SLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-------KLEKEAEIL 149 (582)
Q Consensus 77 nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~ 149 (582)
||+|+|+++.+ |+||+|++ ++++|+||||||||||+++|+|+.+|+.|.+. +++... ........+
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~----~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIV----LNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEE----ECCEecccccchhhhhhHhhcE
Confidence 89999999876 99999999 99999999999999999999999888766432 111110 011111223
Q ss_pred cc--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 150 GA--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
++ +... .....+++............+.++.++++.+|+.. ..++++.+||||||||++|||||+.+|++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22 2111 11223333221111122334567889999999974 568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|||++||+.++..+.++|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999998764 6799999999999999999999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=303.23 Aligned_cols=186 Identities=21% Similarity=0.307 Sum_probs=159.2
Q ss_pred CCeEEEEEEEEEecCC--------ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEe
Q 007982 364 PPVLQFVEVTFGYTPD--------NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQF 435 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~--------~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~ 435 (582)
.++++++|+++.|+-. ..+++||||+|.+||+++|||.||||||||-|+|.|+++|++|+|.+.+..- .
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i-~-- 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI-T-- 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-h--
Confidence 3689999999999632 2689999999999999999999999999999999999999999999877520 0
Q ss_pred chhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 436 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
.+. .....+++.++|+.+|+......+.+++|||||+|||+|||||+.+|+++++||||++
T Consensus 79 --------~~~-----------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 79 --------KLS-----------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred --------hcc-----------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhh
Confidence 000 1123467899999999987554455689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 516 LDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||...+..+..++.++ +.+.++||||+..+..+||||.||..|+|++ .|+.+++..
T Consensus 140 LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE-~g~~~~~~~ 199 (268)
T COG4608 140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE-IGPTEEVFS 199 (268)
T ss_pred cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE-ecCHHHHhh
Confidence 9999888888887654 6799999999999999999999999999987 677777654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=339.54 Aligned_cols=197 Identities=23% Similarity=0.276 Sum_probs=166.0
Q ss_pred EEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEec
Q 007982 369 FVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFH 436 (582)
Q Consensus 369 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~ 436 (582)
++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 4689999964 67999999999999999999999999999999999999999999987652 2488999
Q ss_pred hhhhhhcCCcccHHHHHHhcC---CC---C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 437 QHLAEKLDMDMSALQYMIKEY---PG---N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~---~~---~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|... +....++.+++.... .. . ..+++.++++.+|+.... ++++.+|||||||||+|||||+.+|++|
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-RAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-cCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 8753 344567777764221 01 1 134578899999997654 4567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+.+++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI-ATQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-eecChhhC
Confidence 999999999999999999988765 579999999999999999999999999997 46776654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=297.19 Aligned_cols=188 Identities=23% Similarity=0.320 Sum_probs=155.4
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++++|+.. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999742 47999999999999999999999999999999999999999999987652 248
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
+|++|.+. +. ..++.+++... .....+.+.++++ + ..++.+|||||+|||+|||+++.+|++||||||
T Consensus 85 ~~v~q~~~--~~-~~tv~~~l~~~-~~~~~~~~~~~l~---~-----~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 85 TIIPQDPT--LF-SGTIRSNLDPF-DEYSDEEIYGALR---V-----SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred EEEecCCc--cc-CccHHHHhccc-CCCCHHHHHHHhh---c-----cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 89988753 22 34777776422 1122333444444 2 234689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 513 TNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
|++||+.++..+.+.|+++ +.|+|++|||++++.. ||++++|++|++.. .|+
T Consensus 153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~-~g~ 206 (207)
T cd03369 153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKE-YDH 206 (207)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEe-cCC
Confidence 9999999999999999876 5699999999999976 99999999999864 443
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=289.87 Aligned_cols=204 Identities=23% Similarity=0.339 Sum_probs=170.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhh-----
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLA----- 440 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~----- 440 (582)
|++++||+++|+ ++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|...+..-..+-.+.++
T Consensus 1 MI~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 578999999996 47899999999999999999999999999999999999999999999876532222222222
Q ss_pred ----hhcCCcccHHHHHHhc-CC-------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007982 441 ----EKLDMDMSALQYMIKE-YP-------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 441 ----~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 508 (582)
..+....|+.+.+..+ || ..++..+.++++.++|++.. ++...+||||||||.-+|..++++.+.++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~-dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS-DRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH-HHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 1234566777776532 32 12456689999999998755 45678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 509 LDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 509 LDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||.|+||+.....+++.+++ +++|||+|-||.+|+..++|.|+.|++|+++ ..|++++...
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~ 225 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQ 225 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcC
Confidence 9999999999988888777764 5899999999999999999999999999997 5999998754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=324.37 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=157.5
Q ss_pred EEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHHH-HHHhc--
Q 007982 80 VTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEKE-AEILG-- 150 (582)
Q Consensus 80 ~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~-~~~~~-- 150 (582)
|.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|.+ .+++..+ .+... ...++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I----~i~G~~i~~~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI----FIDGENIMKQSPVELREVRRKKIGMV 76 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE----EECCEECCcCCHHHHHHHHhCcEEEE
Confidence 46888899999999999999999999999999999999999999886643 2222111 11110 11222
Q ss_pred cccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 151 AQEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 151 ~~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+|... ..+..+++.... ...+.....+++.++++.+||.. ..++++.+|||||||||+|||||+.+|+||||||
T Consensus 77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 22211 123444443322 23345556778999999999974 6789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 226 PTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||++||+.++.++.+.|.++ ++|||+||||++++..+||+|++|++|+++. .|+++++..
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~~ 219 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEILR 219 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHHh
Confidence 99999999999999988654 6799999999999999999999999999974 577776653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=305.70 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=156.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|++.. .++||+|.+|++++|+||||||||||+++|+|+.+++.|.+ .+++.... .......++
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i----~~~g~~~~~~~~~~~~i~ 74 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL----TLNGQDHTTTPPSRRPVS 74 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE----EECCeecCcCChhhccEE
Confidence 478999999998654 39999999999999999999999999999999998876643 22221110 000011222
Q ss_pred c--ccCC---CcchHHHHHHHHH-cCC-hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QEDG---GGEQLERVYERLE-ALD-ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~-~~~-~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ +... .....+++..... ... ....+.++.++++.+|+.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 1111 1122233211111 111 1233567899999999964 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||||++||+.++..+.++|.++ +.|+|++|||++++..+||++++|++|++. +.|+++++..
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999988754 579999999999999999999999999997 5677776653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=307.50 Aligned_cols=208 Identities=22% Similarity=0.319 Sum_probs=157.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~-----~ 141 (582)
+|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.++ +.|. +.+++... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~----i~i~g~~~~~~~~~ 78 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK----IYFKGQDIYDPQLD 78 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE----EEECCEEcccchhh
Confidence 68999999999988999999999999999999999999999999999998763 3332 32222111 0
Q ss_pred HHHHHHHhcc--ccCC--CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG--GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +... .....+++..... .. .....+..+.++++.+|+.. ...++++.+|||||+||++||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred HHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 1111122322 2211 1222333321111 11 12234556788899998853 236789999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||+.+|++|||||||++||+.++.++.++|.++ +.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREI 232 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9999999999999999999999999999999876 4799999999999999999999999999974 4665554
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=351.62 Aligned_cols=206 Identities=29% Similarity=0.414 Sum_probs=176.5
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
.-|+++||+|+|++ .+++|+|+||+|++|+.+||+|+||||||||+++|+|+++|++|+|..++. ..+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 35899999999974 357999999999999999999999999999999999999999999998762 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|+.. .+..|+.+++....+..+.+++.++++.+|+.+.....| ...||||||||++||||+++
T Consensus 542 ~~v~Q~~~---lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 542 GYVPQDPR---LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred EEECCChh---hhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999864 345688998875544456677888888887754433222 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
+|++|||||||++||+++...+.+.|.+. +.|+|+|||+++.+ +.||+|++|++|++++ .|+.+++.+..+
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e-~G~~~eLl~~~~ 691 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVA-DGPKDQVLEALR 691 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEe-eCCHHHHHHHhh
Confidence 99999999999999999999999999886 57999999999988 5799999999999985 899998876654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=310.37 Aligned_cols=207 Identities=27% Similarity=0.405 Sum_probs=158.1
Q ss_pred ceEEeeeEEEEC---------CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--
Q 007982 72 DIRIESLSVTFH---------GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-- 140 (582)
Q Consensus 72 ~i~v~nls~~y~---------~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-- 140 (582)
+|+++||++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~----~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS----WRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCEeccc
Confidence 689999999997 47899999999999999999999999999999999999888765432 221111
Q ss_pred ----HHHHHHHHhcc--ccC-----CCcchHHHHHHHHH---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHH
Q 007982 141 ----KLEKEAEILGA--QED-----GGGEQLERVYERLE---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRM 206 (582)
Q Consensus 141 ----~~~~~~~~~~~--~~~-----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrq 206 (582)
........+++ +.. ......+.+...+. .........++.++++.+|+.....++++.+|||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHH
Confidence 00111122222 111 11122222221111 22333445678999999999644568899999999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChh
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 282 (582)
|++|||||+.+|++|||||||++||+.++..+.+.|+++ +.|+|++||+++++..+||++++|++|+++. .|+.+
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~ 237 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE-TQPVG 237 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee-eCChh
Confidence 999999999999999999999999999999999888654 6799999999999999999999999999964 45554
Q ss_pred H
Q 007982 283 Q 283 (582)
Q Consensus 283 ~ 283 (582)
+
T Consensus 238 ~ 238 (268)
T PRK10419 238 D 238 (268)
T ss_pred h
Confidence 4
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=307.51 Aligned_cols=195 Identities=19% Similarity=0.275 Sum_probs=156.0
Q ss_pred EEecCCceeeEeeeEEEe-----cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCccc
Q 007982 374 FGYTPDNLIYKNLDFGVD-----LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMS 448 (582)
Q Consensus 374 ~~y~~~~~~l~~vsl~i~-----~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~ 448 (582)
|+|++....+.+++|++. +|++++|+||||||||||+++|+|+++|++|+|.+.+. .++|++|.+. ..+..+
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCC
Confidence 356544456777887776 68999999999999999999999999999999998765 6899998754 234567
Q ss_pred HHHHHHhcCC--CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 007982 449 ALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526 (582)
Q Consensus 449 ~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 526 (582)
+.+++..... ........++++.+|+.... ++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 7776643211 11123467789999997654 45678999999999999999999999999999999999999999999
Q ss_pred HHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEE-EEcCCHHHHHH
Q 007982 527 ALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVT-RWEGDIMDFKL 572 (582)
Q Consensus 527 ~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~~ 572 (582)
.|+++ +.|||+||||++++..+||+|++|+++... ...+++.+..+
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 88875 579999999999999999999999765432 23455555443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=312.50 Aligned_cols=211 Identities=20% Similarity=0.307 Sum_probs=157.8
Q ss_pred ccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHHH---
Q 007982 70 SRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERLK--- 141 (582)
Q Consensus 70 ~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~~--- 141 (582)
..+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.. ++.|. +.+++....
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~----I~~~g~~i~~~~ 112 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGA----LMFDGEDIYGKF 112 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceE----EEECCEEhhhcc
Confidence 347999999999998889999999999999999999999999999999999753 24443 222221110
Q ss_pred --HHHHHHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHH
Q 007982 142 --LEKEAEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 142 --~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~ 209 (582)
.......+++ +.... ....+++..... .. +....+.++.++++.+|+. ....++++.+|||||||||+
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 0011122322 22111 123333322111 11 1223456677888888873 23457889999999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++. .|..+++.
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~~ 269 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQLF 269 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999974 56665543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=324.63 Aligned_cols=201 Identities=21% Similarity=0.310 Sum_probs=153.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-------HHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-------KLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-------~~~~ 144 (582)
||++ ||+++|+++.+ |+||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ....
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~----~~g~~~~~~~~~~~~~~ 73 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV----LNGRVLFDAEKGICLPP 73 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEEccccccccccch
Confidence 4778 99999988653 89999999999999999999999999999999988765432 211110 0111
Q ss_pred HHHHhcc--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 145 EAEILGA--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 145 ~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
....+++ +... .....+++...+. .....++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 74 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 74 EKRRIGYVFQDARLFPHYKVRGNLRYGMA----KSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hhCCEEEEcCCcccCCCCcHHHHHHhhhh----hhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1112222 2211 1122333322111 123457889999999974 5689999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~ 217 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVW 217 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHH
Confidence 99999999999999999999988754 6799999999999999999999999999974 46665543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=307.26 Aligned_cols=209 Identities=23% Similarity=0.302 Sum_probs=156.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA--S---DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~---~~~~~~~~i~~~~~~~-----~ 141 (582)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.. | +.|. +.+++... .
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~----i~~~g~~~~~~~~~ 80 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGS----IVYNGHNIYSPRTD 80 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccce----EEECCEECcCcccc
Confidence 6999999999998899999999999999999999999999999999999842 4 2333 22222111 0
Q ss_pred HHHHHHHhcc--ccCC--CcchHHHHHHHHH--cCC-hhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG--GGEQLERVYERLE--ALD-ASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~--~~~~~~~~~~~l~--~~~-~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
.......+++ +... .....+++..... ... ......++.++++.+++.. ...++++.+|||||||||+||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 0111112222 2111 1223333322111 111 2234566788899998742 245788999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQMF 235 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 4799999999999999999999999999974 46665543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=313.12 Aligned_cols=209 Identities=21% Similarity=0.331 Sum_probs=156.9
Q ss_pred ccceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCCCceeeeeechHHHH----
Q 007982 70 SRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-----SDMSSLEAVISCDEERL---- 140 (582)
Q Consensus 70 ~~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-----~~~~~~~~~i~~~~~~~---- 140 (582)
..+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+ ++.|.+ .+++...
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I----~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL----TFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE----EECCEEccccc
Confidence 347999999999998899999999999999999999999999999999999975 344432 2222111
Q ss_pred -HHHHHHHHhc--cccCCC--cchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHH
Q 007982 141 -KLEKEAEILG--AQEDGG--GEQLERVYERLE--ALDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 141 -~~~~~~~~~~--~~~~~~--~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~L 210 (582)
........++ ++.... ....+++..... ... .....++.++++.+|+.. ...++++.+|||||||||+|
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 0011112222 222111 122333322111 122 234567889999999842 24578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEE-EEeCCeEEEEcCChhHH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNII-HMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~ 284 (582)
||||+.+|+||||||||++||+.++..+.++|+++ +.|||++|||++++..+|||++ +|++|+++. .|+.+++
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999887 4699999999999999999975 579999975 4665544
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=309.41 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=152.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG- 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 150 (582)
+|+++||++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+ .++.. ..++
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i----~~~~~--------~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI----KRNGK--------LRIGY 71 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCc--------cCEEE
Confidence 7999999999998899999999999999999999999999999999999988876543 22210 0111
Q ss_pred -cccCCCcchH-HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC
Q 007982 151 -AQEDGGGEQL-ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228 (582)
Q Consensus 151 -~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~ 228 (582)
++.......+ ..+.+.+. +.......++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 72 v~q~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLR-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred eccccccccccChhHHHHHh-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1111000000 12222221 111112345788999999974 5678999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 229 HLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 229 ~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++ +++ ..|+++++
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~ 207 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVV 207 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHH
Confidence 99999999999988654 67999999999999999999999975 665 45666654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=303.14 Aligned_cols=213 Identities=25% Similarity=0.340 Sum_probs=165.9
Q ss_pred ceEEeeeEEEECCe------------------------eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 72 DIRIESLSVTFHGH------------------------DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 72 ~i~v~nls~~y~~~------------------------~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
.|+++|++|-||.+ .-++|+||+|+.||++.|+|-||||||||+++|+++..|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 58899999999642 247899999999999999999999999999999999998866
Q ss_pred ceeee----eechHHHH-HHHHH-HHHhcccc--CCCcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccC
Q 007982 128 SLEAV----ISCDEERL-KLEKE-AEILGAQE--DGGGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKT 197 (582)
Q Consensus 128 ~~~~~----i~~~~~~~-~~~~~-~~~~~~~~--~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 197 (582)
.+... ...+.... .++.. ...+++++ .+..++++++...+ .+.+..+.++++.++|+.+||.. +.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG-YADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-hhhcCc
Confidence 53210 01111111 11111 11222111 12234445554433 46788888999999999999975 678999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHH----hhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 198 ~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l----~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
++|||||||||.|||||+.+|+|||+|||+|+|||--+..+.+.| +++++||||||||++++.++.|||.+|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 999999999999999999999999999999999998777666655 4568999999999999999999999999999
Q ss_pred EEEEcCChhHHHH
Q 007982 274 LKFYTGNFDQYVQ 286 (582)
Q Consensus 274 i~~~~g~~~~~~~ 286 (582)
|+ ..|++++++.
T Consensus 243 iv-Q~Gtp~eIl~ 254 (386)
T COG4175 243 IV-QVGTPEEILL 254 (386)
T ss_pred EE-EeCCHHHHHc
Confidence 97 4688887764
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=302.73 Aligned_cols=182 Identities=25% Similarity=0.389 Sum_probs=156.3
Q ss_pred ceEEeeeEEEECC---------eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHH
Q 007982 72 DIRIESLSVTFHG---------HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKL 142 (582)
Q Consensus 72 ~i~v~nls~~y~~---------~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~ 142 (582)
.++++||++.|.- ..+++||||+|++||++||||+||||||||.|+|.++..|+.|. +.+.+..+.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~----i~f~g~~i~- 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE----ILFEGKDIT- 78 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce----EEEcCcchh-
Confidence 6899999999952 37999999999999999999999999999999999999988654 333332210
Q ss_pred HHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 143 EKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
.+......+++.++|+.+|+.....++++++|||||+|||+|||||+.+|++++
T Consensus 79 --------------------------~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV 132 (268)
T COG4608 79 --------------------------KLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIV 132 (268)
T ss_pred --------------------------hcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEE
Confidence 011334557799999999999888999999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||+||...+.++.++|.++ +.|.++||||+..+..+||||++|..|+|+. .|+.++.+
T Consensus 133 ~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE-~g~~~~~~ 198 (268)
T COG4608 133 ADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE-IGPTEEVF 198 (268)
T ss_pred ecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE-ecCHHHHh
Confidence 99999999999999999888654 6799999999999999999999999999985 45555544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=303.64 Aligned_cols=207 Identities=20% Similarity=0.366 Sum_probs=148.7
Q ss_pred ceEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH
Q 007982 72 DIRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ 147 (582)
.|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... .......
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i----~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI----LIDGIDIRDISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE----EECCEeHHHcCHHHHhh
Confidence 4889999999975 579999999999999999999999999999999999998876643 2222111 1111112
Q ss_pred HhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHH---------HhC--CCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 148 ILGAQEDGGGEQLERVYERLEALDASTAEKRAAEIL---------YGL--GFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l---------~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
.+++.+.........+.+.+...........+.+++ +.+ |+.. ..++++.+|||||||||+|||||+.
T Consensus 78 ~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 78 MIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDT-VLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccC-HhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 233222211111123333332111101112233333 333 4432 3456789999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|++|||||||++||+.++.++.+.|.++ +.|||+|||+++++. .||++++|++|+++. .|+++++.
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~-~~~~~~~~ 225 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIE-EGTHDELL 225 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEE-eCCHHHHH
Confidence 99999999999999999999999999876 479999999999996 599999999999974 56666553
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=307.40 Aligned_cols=213 Identities=22% Similarity=0.351 Sum_probs=156.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHH-----HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~-----~~~~~ 145 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.. ...|.+.+++... .....
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 68999999999988999999999999999999999999999999999999765310 0012222222111 00111
Q ss_pred HHHhcc--ccCC---CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGA--QEDG---GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~--~~~~---~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++ +... .....+++..... .. ......+.+.++++.+++.. ...++++.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 112221 2111 1223333322211 11 12234456777777776531 235788999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++.++.++|+++ +.|+|++||+++++..+||++++|++|+++ +.|+.+++.
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999876 479999999999999999999999999997 456666554
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=312.11 Aligned_cols=207 Identities=22% Similarity=0.372 Sum_probs=158.3
Q ss_pred ceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
+|+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.|.+. +++... ......
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK----IDGITISKENLKEIR 82 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE----ECCEecCcCCHHHHh
Confidence 799999999995 46899999999999999999999999999999999999988765432 221111 011111
Q ss_pred HHhcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ +.. ......+++..... .+.......++.++++.+|+.+ ..++++.+||||||||++|||||+.+|
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 12222 211 11122333321111 1333445567889999999974 568899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.++|+++ +.|+|++||+++++. .||++++|++|++.. .|+.+++.
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 230 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEIL 230 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999999765 379999999999986 799999999999964 46655543
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=309.49 Aligned_cols=211 Identities=24% Similarity=0.265 Sum_probs=156.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC----ceeeeeechHHHH---HHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS----SLEAVISCDEERL---KLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~----~~~~~i~~~~~~~---~~~~ 144 (582)
+|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.+ ...|.+.+++... ....
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 48899999999999999999999999999999999999999999999999877510 0122233322111 0111
Q ss_pred HHHHhc--cccCC---CcchHHHHHHHHH-c-----CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 145 EAEILG--AQEDG---GGEQLERVYERLE-A-----LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 145 ~~~~~~--~~~~~---~~~~~~~~~~~l~-~-----~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
....+. ++... .....+++..... . ........++.++++.+|+.. ..++++.+|||||||||+||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHH
Confidence 111122 22211 1222333321110 0 011223456888999999974 5688999999999999999999
Q ss_pred Hh---------cCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCC
Q 007982 214 LF---------INPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGN 280 (582)
Q Consensus 214 L~---------~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 280 (582)
|+ .+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~g~ 238 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGA 238 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-ecC
Confidence 99 599999999999999999999999998754 5799999999999999999999999999974 466
Q ss_pred hhHH
Q 007982 281 FDQY 284 (582)
Q Consensus 281 ~~~~ 284 (582)
.+++
T Consensus 239 ~~~~ 242 (272)
T PRK13547 239 PADV 242 (272)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=305.12 Aligned_cols=202 Identities=19% Similarity=0.259 Sum_probs=166.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-----CCCcEEEEcCc-----------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-----PLDGMVRRHNH----------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-----p~~G~i~~~~~----------- 429 (582)
+|+++||++.|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|++. |++|+|...+.
T Consensus 3 ~l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 5889999999964 679999999999999999999999999999999999864 48999976542
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhcC--C---CC--hHHHHHHHHHhcCCCCc---cccCCCCCCChhHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKEY--P---GN--EEEKMRAAIGRFGLTGK---AQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~---~~--~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lA 497 (582)
..++|++|... +. ..++.+++.... . .. ..+++.++++.+|+... ..+.++.+|||||+|||+||
T Consensus 82 ~~~~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPN--PF-PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCc--cC-cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 23788888753 22 236777664221 1 11 23456778899988431 22456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 498 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++. +.|++.++..
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~~ 234 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII-ESGLTDQIFI 234 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE-EeCCHHHHHh
Confidence 9999999999999999999999999999999875 468999999999999999999999999996 5789888753
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=306.66 Aligned_cols=208 Identities=20% Similarity=0.343 Sum_probs=155.6
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCCceeeeeechHHHHH-----H
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA--S---DMSSLEAVISCDEERLK-----L 142 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~---~~~~~~~~i~~~~~~~~-----~ 142 (582)
-+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+ + +.|. +.+++.... .
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~----i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE----LDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceE----EEECCEehHhcccch
Confidence 468999999998899999999999999999999999999999999999875 2 3332 333222111 0
Q ss_pred HHHHHHhcc--ccCC--CcchHHHHHHH--HHcC--ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHH
Q 007982 143 EKEAEILGA--QEDG--GGEQLERVYER--LEAL--DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 143 ~~~~~~~~~--~~~~--~~~~~~~~~~~--l~~~--~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LA 211 (582)
......+++ +... .....+++... .... ........+.++++.+|+.. ...++++.+|||||||||+||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 011122322 2211 11223333211 1111 12234456788999999853 235678999999999999999
Q ss_pred HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 212 raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEIF 236 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999999876 5799999999999999999999999999974 46655543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=307.08 Aligned_cols=213 Identities=22% Similarity=0.353 Sum_probs=161.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCcee--eeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE--AVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~--~~i~~~~~~~---~~~~~~ 146 (582)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+++.|.+. +.+.+++... ......
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 69999999999999999999999999999999999999999999999999887765431 2222221111 111111
Q ss_pred HHhc--cccCC---CcchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHHh
Q 007982 147 EILG--AQEDG---GGEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 147 ~~~~--~~~~~---~~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
..++ ++... .....+++..... .. +......++.++++.+++.. ...++.+..||||||||++|||||+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 1222 12111 1123333322211 11 22344567889999999852 2457789999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++.++.++|.++ +.|||+|||+++++..+||++++|++|+++.+ |..+++.
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~-g~~~~~~ 240 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW-GSSNEIF 240 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999876 47999999999999999999999999999754 5555543
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=305.08 Aligned_cols=206 Identities=20% Similarity=0.294 Sum_probs=152.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
+|+++||++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+. +++.|.+ .+++... ......
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i----~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV----EFKGKDLLELSPEDRA 76 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE----EECCCccccCCHHHHh
Confidence 478999999999889999999999999999999999999999999999984 4554432 2222111 000111
Q ss_pred -HHhcc--ccCCCc---chHHH---HHHHHHc------CChhHHHHHHHHHHHhCCCChhhhhccCC-CCChhHHHHHHH
Q 007982 147 -EILGA--QEDGGG---EQLER---VYERLEA------LDASTAEKRAAEILYGLGFNKTMQAKKTR-DFSGGWRMRIAL 210 (582)
Q Consensus 147 -~~~~~--~~~~~~---~~~~~---~~~~l~~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~-~LSGGqrqRv~L 210 (582)
..+++ +..... ..... +...+.. +........+.++++.+++.....++++. +|||||||||+|
T Consensus 77 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 77 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred hcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 11221 111100 00000 1111110 11223456678899999996445566675 899999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhh-cCeEEEEeCCeEEEEcCChh
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV-CTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 282 (582)
||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++..+ ||++++|++|+++ +.|+++
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~ 231 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFT 231 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHH
Confidence 99999999999999999999999999999987654 57999999999999987 8999999999996 457665
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=281.19 Aligned_cols=205 Identities=21% Similarity=0.324 Sum_probs=156.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 147 (582)
+|.+++|.++|+..+. .++++|+.||+++|+|||||||||||++|+|+..|..|.+ .+++... ..++-..
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i----~i~g~d~t~~~P~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI----LINGVDHTASPPAERPVS 74 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE----EEcCeecCcCCcccCChh
Confidence 4678899999986543 4688999999999999999999999999999999886643 2222211 0111111
Q ss_pred HhccccCCCcchHHHHHHHHH-cC-----ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 148 ILGAQEDGGGEQLERVYERLE-AL-----DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~-~~-----~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
.+ +|..+ .+....+..++. ++ -....++++..++.++|+.. ..++.|.+|||||||||||||+|+++-+||
T Consensus 75 ml-FQEnN-LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 75 ML-FQENN-LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred hh-hhccc-cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 11 22211 111122222221 11 12445678999999999975 568999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+||||+++|||.-+.++..++.++ +.|++||||.++.+..++|+++++++|+|. +.|..++++.
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~ 219 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS 219 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence 999999999999999998888654 679999999999999999999999999996 5677766653
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=344.60 Aligned_cols=202 Identities=26% Similarity=0.338 Sum_probs=171.2
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-++++||+|+|++. +++|+|+||+|++|+.+||+|+||||||||+++|+|+++|++|+|..++. ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999753 67999999999999999999999999999999999999999999998763 3578
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCC-ChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPG-NEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
|++|++. -++.|+.+++....+. .+.+++.++++.+|+.+.....| ...||||||||++|||||++
T Consensus 421 ~v~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVH---LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCce---eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999853 3467888888654332 35677888888877654322211 25699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+. .||+|++|++|++.+ .|+.+++.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e-~g~~~~l~~ 567 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVE-RGTHAELLA 567 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999886 579999999999874 699999999999986 888887754
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=311.69 Aligned_cols=206 Identities=19% Similarity=0.303 Sum_probs=154.4
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
+|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++...........++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~i~~~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI----SILGQPTRQALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE----EECCEEhHHhhccceEE
Confidence 589999999995 5789999999999999999999999999999999999988875543 22222111000001122
Q ss_pred c--ccCCC----c-chHHHHHHH-HH-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 151 A--QEDGG----G-EQLERVYER-LE-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 151 ~--~~~~~----~-~~~~~~~~~-l~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+ +.... . ...+.+... .. .......+.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2 11110 0 111111100 00 0111233456788999999975 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+++++ +|+++. .|+.+++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 9999999999999999999999999765 579999999999999999999877 899864 4666543
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=307.42 Aligned_cols=207 Identities=20% Similarity=0.332 Sum_probs=153.1
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CCCceeeeeechHHHH-----
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA--S---DMSSLEAVISCDEERL----- 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~---~~~~~~~~i~~~~~~~----- 140 (582)
.+|+++||+++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+.+ + +.|. +.+++...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~----i~~~g~~~~~~~~ 79 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGN----VSLRGQNIYAPNE 79 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccE----EEEcCEEcccccc
Confidence 37999999999998899999999999999999999999999999999999854 3 2332 22222111
Q ss_pred HHHHHHHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCC---hhhhhccCCCCChhHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFN---KTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~L 210 (582)
........+++ +.... ....+++..... .. .....+..+.+.++.+++. ....++++.+|||||||||+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred cHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 00111112222 21111 122333322111 11 1122344567778888763 134578899999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChh
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 282 (582)
||||+.+|++|||||||++||+.++.++.++|+++ +.|+|+||||++++..+||+|++|++|+++.+ |+..
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 232 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF-ADTK 232 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 99999999999999999999999999999999876 47999999999999999999999999999764 4443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=323.72 Aligned_cols=199 Identities=26% Similarity=0.361 Sum_probs=173.8
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------e
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------L 430 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~ 430 (582)
.+++++++|++++|++ ..+|+++||+|++||++||+|.||||||||+|+|+|.++|++|+|.+++. .
T Consensus 5 ~~~ll~~~~i~K~Fgg-V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSFGG-VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ccceeeeecceEEcCC-ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 3578999999999975 68999999999999999999999999999999999999999999998764 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcC-CC---------ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEY-PG---------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
-|..++|.+. +.+++|+.+++.... +. ...++++++|+++|+... .+.++.+||.||||.|.||||+
T Consensus 84 GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 84 GIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred CcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence 3778899875 667889999885321 11 124568889999999644 5678999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
..+++||||||||+.|+....+.|.+.++++ |.+||+|||.++++.++||||.||.+|+++. +.+
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~-~~~ 228 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG-TRP 228 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee-ecc
Confidence 9999999999999999999999999988776 6799999999999999999999999999863 444
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=302.62 Aligned_cols=195 Identities=20% Similarity=0.272 Sum_probs=149.9
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
.+|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+++.|.+ .+++...........+.
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i----~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI----QIDGKTATRGDRSRFMA 85 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE----EECCEEccchhhhhceE
Confidence 37999999999998899999999999999999999999999999999999998876543 22221110000111122
Q ss_pred c--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 151 A--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+ +... .....+++..... ......+..+.++++.+++.. ..++++.+|||||||||+||||++.+|++|||||
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCG-LHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHH-hcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 1111 1122233221111 111223456788999999975 4688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 226 PTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
||++||+.++.++.++|.++ +.|+|++|||++++.++||++++|+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999765 68999999999999999999999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=312.24 Aligned_cols=210 Identities=24% Similarity=0.331 Sum_probs=159.3
Q ss_pred ceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
+|+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+++.+. .|.+.+++... ......
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~-~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-NSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCC-CcEEEECCEECCcCCHHHHH
Confidence 6999999999975 46999999999999999999999999999999999998776410 01222222111 011111
Q ss_pred HHhc--cccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILG--AQED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~--~~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..++ ++.. ......+++..... ........+++.++++.+|+.+ ..++++.+|||||+|||+|||||+.+|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2222 2211 11233333322111 2334455677899999999974 578999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.+.|+++ +.|||++||+++++. .||++++|++|+++. .|+.+++.
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 231 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIF 231 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999998764 579999999999995 799999999999974 56666654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=304.09 Aligned_cols=206 Identities=27% Similarity=0.398 Sum_probs=157.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhcc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILGA 151 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 151 (582)
|+++|++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+.+++.|.+. +++.... .......+++
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~----~~g~~~~~~~~~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL----LDGKDITNLPPHKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE----ECCEEcCcCChhhcceEE
Confidence 4689999999999999999999999999999999999999999999999988765432 2211110 0000111221
Q ss_pred --ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 152 --QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+... .....+++.... ..........++.++++.+|+.+ ..++.+.+|||||+|||+|||||+.+|++||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1111 112223322111 11223445567889999999974 568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||++||+.++.++.+.|+++ +.|||++||+++++..+||++++|++|++.. .|+.+++
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~ 218 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEI 218 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHH
Confidence 999999999999999998764 6799999999999999999999999999974 4555443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=343.05 Aligned_cols=201 Identities=27% Similarity=0.371 Sum_probs=172.0
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
.-++++|++|+|++++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|..++. ..++
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35899999999975567999999999999999999999999999999999999999999988763 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|++. -++.|+.+++.... ..+.+++.++++.+|+.+..... ....||||||||++|||||+.+
T Consensus 419 ~v~Q~~~---lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 419 MVQQDPV---VLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred EEccCCc---cccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999864 35568888886543 34566788888888865433221 2357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|+||||||||++||+++...+.+.|.++ ++|+|+|||+++.+. .||+|++|++|++++ .|+.+++.
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~-~G~~~~L~ 562 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVE-QGTHQQLL 562 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999999999876 579999999999885 599999999999975 88888765
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=272.91 Aligned_cols=212 Identities=24% Similarity=0.385 Sum_probs=168.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee---eech--HHHH---HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV---ISCD--EERL---KLE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~---i~~~--~~~~---~~~ 143 (582)
.|+++|+++.||...+|-|++|+.+.||.+.|+||||+|||||++.|.-+..|..|.+... +.+. ..+. .++
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999998887776654311 1111 1111 222
Q ss_pred HHHHHhccccC--CCcchHHHHHHH---HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 144 KEAEILGAQED--GGGEQLERVYER---LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 144 ~~~~~~~~~~~--~~~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
+....++.+.. +...+.+++.+. ..++..++...++.++|+++.+.+ ..++.|-.|||||+|||+|||||+++|
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHhcCC
Confidence 22222222211 222344444432 235677888899999999999975 679999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|++||||++|||+-...+.++|+++ |.|-++|||..+++..++.+|+.|++|+|+. .|+.+.|.
T Consensus 161 qvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive-~g~a~~ft 229 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCFT 229 (242)
T ss_pred cEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe-ecchhhcc
Confidence 999999999999999999999998876 6789999999999999999999999999974 57766554
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=290.25 Aligned_cols=210 Identities=22% Similarity=0.282 Sum_probs=159.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH---HHHHH-H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK---LEKEA-E 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~---~~~~~-~ 147 (582)
+++++||+..|+...+|.+|||++++||+++|+|+||+||||||++|+|+.++..|. +.+.+.++. ..+.. .
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~----I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR----IIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCee----EEECCeecCCCCHHHHHhC
Confidence 799999999999999999999999999999999999999999999999999987543 333333221 11111 1
Q ss_pred HhccccC-----CCcchHHHHHHHHHcCChhHHHH-HHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 148 ILGAQED-----GGGEQLERVYERLEALDASTAEK-RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 148 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
-+.+.+. +..++.+++.-............ ..+++.+.|---....+++..+|||||||.++|||||+.+|++|
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 1222111 11223333321111111111222 26667777753345678899999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+|||||.||-|.-++.|.+.|+++ +.||++|.++..++..++||.++|++|+++ +.|+.++...
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 999999999999999999998765 349999999999999999999999999997 5688777654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=350.29 Aligned_cols=202 Identities=21% Similarity=0.320 Sum_probs=172.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
-|+++||+|+|++++++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|..++. ..++|
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 5899999999975568999999999999999999999999999999999999999999998763 25899
Q ss_pred echhhhhhcCCcccHHHHHHhc-CCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE-YPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|+.. -+..|+.+++... .+..+.+++.++++.+|+.+..... ....||||||||++||||++++
T Consensus 553 v~Q~~~---lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 553 LPQEPY---IFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EecCce---ehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 999863 3566889988754 2444566778888877765432211 2357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW-DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+++...+.+.|.++ +.|+|+|||+++.+ ..||+|++|++|++++ .|+.+++.+
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~-~G~~~~L~~ 697 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIE-QGSHDELLD 697 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999876 57999999999988 5799999999999975 899888754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=305.47 Aligned_cols=212 Identities=21% Similarity=0.335 Sum_probs=156.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHH-----HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~-----~~~~~ 145 (582)
+|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+++.+ ...|.+.+++... .....
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 68999999999988899999999999999999999999999999999999887520 0012222222111 00111
Q ss_pred HHHhcc--ccCCC--cchHHHHHHHHH--cCC-hhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGA--QEDGG--GEQLERVYERLE--ALD-ASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~--~~~~~--~~~~~~~~~~l~--~~~-~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++ +.... ....+++..... ... ....+..+.++++.+++.. ...++++.+|||||||||+|||||+
T Consensus 84 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 84 RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred hceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 122222 22111 122233321111 111 1223456777788888642 3457899999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.++.
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14249 164 IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEI 233 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence 999999999999999999999999999876 4799999999999999999999999999974 4665554
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=306.63 Aligned_cols=213 Identities=23% Similarity=0.347 Sum_probs=157.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc-eeeeeechHHHH-----HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS-LEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~-~~~~i~~~~~~~-----~~~~~ 145 (582)
.|+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+.+++... ..|.+.+++... .....
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 689999999999889999999999999999999999999999999999987642100 122233332211 00111
Q ss_pred HHHhcc--ccCC--CcchHHHHHHHHH--c-CChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGA--QEDG--GGEQLERVYERLE--A-LDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~--~~~~--~~~~~~~~~~~l~--~-~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++ +... .....+++..... . .+......++.++++.+|+.. ...++++.+|||||||||+|||||+
T Consensus 87 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 87 RRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 112222 2211 1223333322111 1 122344566788899998742 3457889999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEe-----CCeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQ-----NKQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++.++.++|+++ +.|||++||+++++..+||++++|+ +|+++. .|+.+++.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~~ 242 (259)
T PRK14260 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQIF 242 (259)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHHh
Confidence 999999999999999999999999999876 4799999999999999999999998 599874 56766553
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=294.12 Aligned_cols=172 Identities=23% Similarity=0.336 Sum_probs=140.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEcCce------------eE
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNHL------------RI 432 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl--~~p~~G~i~~~~~~------------~~ 432 (582)
|+++|+++.|++ +.+|+|+||+|.+|++++|+|+||||||||+++|+|+ ++|++|+|.+++.. .+
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCC-EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 468999999974 6799999999999999999999999999999999999 57999999876531 25
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
+|++|... +....++ .+.+ .....+|||||+|||+|||+++.+|++||||||
T Consensus 80 ~~v~q~~~--~~~~~~~----------------~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 80 FLAFQYPP--EIPGVKN----------------ADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred EEeecChh--hccCccH----------------HHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 55555432 1111111 1122 122258999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHh-hcCEEEEEeCCeEEEEcCCHH
Q 007982 513 TNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQ-VAHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~-~~d~i~~l~~G~i~~~~g~~~ 568 (582)
|++||+.++..+.+.|.++ +.|||++|||++++.. +||++++|++|++.. .|+.+
T Consensus 132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 190 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK-SGDKE 190 (200)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE-EccHH
Confidence 9999999999999998875 5799999999999988 799999999999974 66444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=308.94 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=158.0
Q ss_pred ceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
+|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+++.|.+ .+++... ......
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i----~~~g~~~~~~~~~~~~ 82 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI----FYNNQAITDDNFEKLR 82 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEECCcCCHHHHH
Confidence 6999999999975 459999999999999999999999999999999999998876543 2222111 111111
Q ss_pred HHhcc--ccCC----CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QEDG----GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~~----~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ +... ......++..... .........++.++++.+|+.+ ..++++.+||||||||++|||||+.+|
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 22222 2111 1112222222111 1233444567889999999974 567899999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.++|+++ +.|||+|||+++++.. ||+|++|++|+++. .|+.+++.
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999998764 5799999999999985 99999999999974 56666553
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=288.91 Aligned_cols=211 Identities=24% Similarity=0.350 Sum_probs=163.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee---e-echHHHHHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV---I-SCDEERLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~---i-~~~~~~~~~~~~~~ 147 (582)
||+++||+|+|+++.+++++|++|++|.+++|||||||||||||.+++.+.+.+.|.+... + .++... +.+...
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~--LAk~lS 78 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE--LAKKLS 78 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH--HHHHHH
Confidence 5899999999999999999999999999999999999999999999999998887654211 0 122211 111111
Q ss_pred HhccccC--CCcchHHHHHH----HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 148 ILGAQED--GGGEQLERVYE----RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 148 ~~~~~~~--~~~~~~~~~~~----~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
.+.+... ...++.+-+.+ .-.+....+.+..+.+.++.|+|.+ +.+++..+||||||||..||..++++.+++
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-LSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-hHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 1111100 00111111100 0112234566778999999999974 789999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 222 LLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+||||.|+||......+++.|++ +++||++|-||.+|+..++|+|+-|++|+++ ..|++++...
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~ 225 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQ 225 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcC
Confidence 99999999999999999988865 5899999999999999999999999999997 5788887663
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=304.77 Aligned_cols=203 Identities=19% Similarity=0.226 Sum_probs=161.3
Q ss_pred CCeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 364 PPVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
...|+++|+++.|+.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4579999999999642 46999999999999999999999999999999999999999999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHH---------Hhc--CCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAI---------GRF--GLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
++|++|... + +..++.+++.... ......+..++ +.+ |+..... .++..|||||+|||+|||||
T Consensus 97 i~~v~q~~~--l-~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 97 LSIILQDPI--L-FSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred EEEECCCCc--c-cccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCHHHHHHHHHHHHH
Confidence 788888753 2 2345555543211 11122233333 333 4443332 34579999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+.+|++|||||||+|||+.++..+.+.+.++ +.|||++||+++.+.. ||+|++|++|+++ ..|+.+++...
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~~ 244 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILV-ECDTPENLLAQ 244 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEE-EeCCHHHHHhc
Confidence 9999999999999999999999999998774 5799999999999975 9999999999997 57888877653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.55 Aligned_cols=203 Identities=25% Similarity=0.383 Sum_probs=175.1
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
+.|+++||+|+|+++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999753 57999999999999999999999999999999999999999999988753 248
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc---------CCCCCCChhHHHHHHHHHHHccC
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV---------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
+|++|++. -++.|+.+++....+..+.+++.++++.+++.+.... .....||||||||++||||++++
T Consensus 417 ~~v~Q~~~---lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 417 SVVSQRVH---LFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred eEEcccch---hhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 89999863 2456888888655454567788999999998765433 12457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+++...+.+.|.++ +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 562 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQIIE-QGTHQELLA 562 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEEE-eCCHHHHHh
Confidence 9999999999999999999999999876 579999999999985 599999999999975 788887754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=306.05 Aligned_cols=213 Identities=21% Similarity=0.283 Sum_probs=156.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHHH-----HHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERLK-----LEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~~-----~~~~ 145 (582)
+|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+..+... ...|.+.+++.... ....
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 79999999999999999999999999999999999999999999999998642100 00122333222110 1111
Q ss_pred HHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++ +.... ....+++..... .. .....+..+.++++.+++.+ ...++++.+||||||||++|||||+
T Consensus 86 ~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred hceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 122222 22111 122233321111 11 12234556788888888742 2357889999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++.++.++|+++ +.|||++||+++++..+||++++|++|+++. .|+.+++.
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE-FDKTTQIF 236 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE-cCCHHHHH
Confidence 999999999999999999999999999876 4799999999999999999999999999974 56665543
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=320.90 Aligned_cols=200 Identities=21% Similarity=0.297 Sum_probs=152.8
Q ss_pred eeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-------HHHHHHHh
Q 007982 77 SLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-------LEKEAEIL 149 (582)
Q Consensus 77 nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~ 149 (582)
||+++|+++.+ ++||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++.... .......+
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~----~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV----LNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE----ECCEECccCccccccchhhCCe
Confidence 89999988764 99999999999999999999999999999999988765432 2221110 00111112
Q ss_pred c--cccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 150 G--AQEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 150 ~--~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+ ++... .....+++...+........+.++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD 156 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD 156 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 2 22211 12333343322222222334567899999999974 578999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 225 EPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 157 EPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 219 (354)
T TIGR02142 157 EPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEV 219 (354)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHH
Confidence 999999999999999988764 6799999999999999999999999999974 4665543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=348.41 Aligned_cols=203 Identities=27% Similarity=0.350 Sum_probs=171.0
Q ss_pred CeEEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
..|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35999999999974 357999999999999999999999999999999999999999999988763 25
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~ 501 (582)
++|++|++. -+..|+.+++....+..+++++.++++..++.+..... ...+||||||||++||||++
T Consensus 557 i~~v~Q~~~---lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPV---LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCcc---ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 899999863 35678899887554444567788888888775433221 13579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|+||||||||++||+++...+.+.....+.|+|+|||+++.+. .||+|++|++|+|++ .|+.+++.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive-~Gt~~eL~~ 702 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVE-MGTHKQLME 702 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEE-eeCHHHHHh
Confidence 999999999999999999999998833334689999999999884 699999999999975 899888765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=349.96 Aligned_cols=203 Identities=27% Similarity=0.352 Sum_probs=172.7
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
..++++||+|+||.. ..+|+|+||.|++|+.+||||||||||||++++|.++|.|++|+|..++. ..
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 469999999999854 36999999999999999999999999999999999999999999998764 25
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~ 501 (582)
+|.+.|.+ .-+..|+.+++....+....+++.++++..+..++... ..-.+|||||||||+|||||+
T Consensus 429 iglV~QeP---vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 429 IGLVSQEP---VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred cCeeeech---hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 78888886 34678999999877666666666666655443222111 112479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|+||||||||++||+++...+.++|.+. +.|.|+|+|++..+.. ||+|++|++|+|++ .|+.+++.+
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi~ 576 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELIA 576 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHHh
Confidence 999999999999999999999999999886 6799999999999976 99999999999975 899988765
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=310.52 Aligned_cols=208 Identities=20% Similarity=0.288 Sum_probs=159.9
Q ss_pred ceEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 72 DIRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
+|+++||+++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+.+++.|.+. +++... .....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~----~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK----IDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE----ECCEECCcCCHHHH
Confidence 6999999999974 3599999999999999999999999999999999999988766432 221111 01111
Q ss_pred HHHhc--cccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 AEILG--AQED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 ~~~~~--~~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...++ ++.. ......+++..... ........+++.++++.+|+.. ..++++.+|||||+|||+|||||+.+
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 12222 2221 11223333322111 2233444567889999999964 57889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELFA 229 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999998654 679999999999997 69999999999996 4577776653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=298.53 Aligned_cols=187 Identities=25% Similarity=0.348 Sum_probs=150.0
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------eeE
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRI 432 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~~ 432 (582)
.+.|+.|+|+++.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999976567999999999999999999999999999999999999999999987542 247
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcc----------ccCCCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKA----------QVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|.+. + +..++.+++...... ....+.++++.+++.... ...++..|||||+|||+|||+++.
T Consensus 82 ~~~~q~~~--~-~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPW--L-LNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCc--c-ccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 78888753 2 245777776542221 223345666666664321 123568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH--HHH---hcCceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAE--ALN---EWDGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~--~l~---~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+|++|||||||++||+.++..+.+ +++ +.+.|||++|||++++. .||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999988776 343 44689999999999985 699999998873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=293.06 Aligned_cols=172 Identities=24% Similarity=0.327 Sum_probs=143.6
Q ss_pred CeEEEEEEEEEecC-----CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CCCCcEEEEcCc--------
Q 007982 365 PVLQFVEVTFGYTP-----DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VPLDGMVRRHNH-------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-----~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p~~G~i~~~~~-------- 429 (582)
+.|+++|+++.|++ .+++|+++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+.
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35899999999975 257999999999999999999999999999999999999 999999987653
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
..++|++|... +....++.+++... ..+ .+|||||+|||+|||||+.+|++|||
T Consensus 82 ~~i~~~~q~~~--~~~~~t~~~~i~~~-------------~~~-----------~~LS~G~~qrv~laral~~~p~illl 135 (194)
T cd03213 82 KIIGYVPQDDI--LHPTLTVRETLMFA-------------AKL-----------RGLSGGERKRVSIALELVSNPSLLFL 135 (194)
T ss_pred heEEEccCccc--CCCCCcHHHHHHHH-------------HHh-----------ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 23667776632 22334555443210 000 17999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHH-HHHhhcCEEEEEeCCeEEE
Q 007982 510 DEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFR-LINQVAHEIWVCENQAVTR 562 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~ 562 (582)
||||++||+.++..+.+.|+++ +.|||++|||++ ++..+||++++|++|++..
T Consensus 136 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 136 DEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 9999999999999999998875 569999999996 7888999999999999863
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=305.79 Aligned_cols=213 Identities=20% Similarity=0.313 Sum_probs=157.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc-eeeeeechHHHHH-----HHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS-LEAVISCDEERLK-----LEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~-~~~~i~~~~~~~~-----~~~~ 145 (582)
.|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+.++++.. ..+.+.+++.... ....
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 699999999999888999999999999999999999999999999999998874110 1122333222110 0111
Q ss_pred HHHhcc--ccCCC--cchHHHHHHHHH--cC-ChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGA--QEDGG--GEQLERVYERLE--AL-DASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~--~~~~~--~~~~~~~~~~l~--~~-~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++ +.... ....+++..... .. +......++.++++.+++.. ...++++.+|||||+|||+|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 87 RRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 112222 21111 122222221111 11 22233456788999998742 2457889999999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeC-----CeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQN-----KQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~-----G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++ |+++ +.|+.+++.
T Consensus 167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~~ 244 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLTKKIF 244 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCHHHHH
Confidence 999999999999999999999999988763 67999999999999999999999999 9987 457766553
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=306.90 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=154.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CCCceeeeeechHHHH-----H
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-----DMSSLEAVISCDEERL-----K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-----~~~~~~~~i~~~~~~~-----~ 141 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+..+ +.|. +.+++... .
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~----i~~~g~~i~~~~~~ 85 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK----VTFHGKNLYAPDVD 85 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceE----EEECCEEccccccC
Confidence 79999999999988999999999999999999999999999999999998642 3332 22222111 0
Q ss_pred HHHHHHHhcc--ccCCC--cchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCCh---hhhhccCCCCChhHHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDGG--GEQLERVYERLE--ALDASTAEKRAAEILYGLGFNK---TMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~~--~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAr 212 (582)
.......+++ +.... ....+++..... ... ....+++.++++.+++.. ...++++.+|||||||||+|||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 1111122322 22111 122222221111 111 123455677788887742 2356789999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEe---------CCeEEEEcCCh
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQ---------NKQLKFYTGNF 281 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~---------~G~i~~~~g~~ 281 (582)
||+.+|++|||||||++||+.++.++.++|.++ +.|||++|||++++..+||++++|+ +|+++ ..|+.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~~ 243 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDRT 243 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCCH
Confidence 999999999999999999999999999999876 4699999999999999999999998 79987 45666
Q ss_pred hHHH
Q 007982 282 DQYV 285 (582)
Q Consensus 282 ~~~~ 285 (582)
+++.
T Consensus 244 ~~~~ 247 (264)
T PRK14243 244 EKIF 247 (264)
T ss_pred HHHH
Confidence 6654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 582 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 8e-32 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 7e-15 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-12 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-30 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-14 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-12 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 6e-30 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-14 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 4e-12 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-11 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-07 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 7e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 8e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-08 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-08 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 7e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-07 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-07 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-07 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-07 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-07 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-07 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-06 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 8e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-05 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 6e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 582 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-137 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-40 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-39 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-46 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-39 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-24 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-34 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-21 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-29 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-25 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 6e-12 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-19 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-08 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-17 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 9e-14 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-15 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-13 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-12 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-06 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-11 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-07 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-06 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-11 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-10 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 9e-10 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-09 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-09 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-09 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-04 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-09 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-07 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 8e-09 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-08 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 3e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-04 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-137
Identities = 125/612 (20%), Positives = 219/612 (35%), Gaps = 105/612 (17%)
Query: 34 AAALQNGSAADKAASEMAAMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSEL 93
L A D + D+ S+ + L+ ++L
Sbjct: 397 TIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQL 456
Query: 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQE 153
L RRYG+ G NGCGKSTL+ AI + ++ + +E R + E +I G
Sbjct: 457 RLKRARRYGICGPNGCGKSTLMRAIANGQ------VDGFPTQEECRT-VYVEHDIDGTHS 509
Query: 154 DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213
D L+ V+E ++ + L GF M A SGGW+M++ALARA
Sbjct: 510 DT--SVLDFVFE-----SGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARA 562
Query: 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQ 273
+ N ILLLDEPTNHLD WL L + ISH FL+ VC II+ + +
Sbjct: 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLK 622
Query: 274 LKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKT 333
L+ Y GNF ++V+ K Y+ K ++K+K
Sbjct: 623 LRKYKGNFTEFVKKC-----PAAKAYEELSNTDLEFKFPEP-------GYLEGVKTKQKA 670
Query: 334 LAKMERG-----GLTEKVVKDKVLVFRFVD-------------------VGKLPPPVLQF 369
+ K+ G ++ + D G+L P +
Sbjct: 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 370 VE---VTFGY---------------TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLK 411
Y TP I G D ++ + +
Sbjct: 731 YTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMN 790
Query: 412 LMTG-----------------------------------DLVPLDGMVRRHN-HLRIAQF 435
+ M+ N + +
Sbjct: 791 KIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGEL 850
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGK-AQVMPMKNLSDGQRSRV 494
+ ++ + ++ +++ GL + ++ LS GQ+ ++
Sbjct: 851 VESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKL 910
Query: 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
V A +++PH+++LDEPTN+LD +++ +L++AL E++GG+++++H + E+W
Sbjct: 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWA 970
Query: 555 CENQAVTRWEGD 566
++ +T +
Sbjct: 971 VKDGRMTPSGHN 982
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 2e-40
Identities = 64/357 (17%), Positives = 122/357 (34%), Gaps = 49/357 (13%)
Query: 222 LLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNF 281
+ E ++ D+ + + L K + + +++ + ++I + + + +
Sbjct: 333 AIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHI 392
Query: 282 DQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGG 341
Y+ L E + K E + A + + E +LA +
Sbjct: 393 TPYM--TIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK-- 448
Query: 342 LTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGP 401
++ + R + GP
Sbjct: 449 ---------------------------------------ILLNKTQLRLKRARRYGICGP 469
Query: 402 NGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461
NG GKSTL++ + V R + + D S L + + E
Sbjct: 470 NGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEHDI-DGTHSDTSVLDF-VFESGVGT 524
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
+E ++ + FG T + MP+ LS G + ++ A R +LLLDEPTNHLD +
Sbjct: 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNV 584
Query: 522 DSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKA 578
L LN + +SHD ++ V I E + +++G+ +F + A
Sbjct: 585 AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF-VKKCPAA 640
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 9e-39
Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 117 AIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAE 176
+GE ++S D + + E +++
Sbjct: 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVA----EVDMKEALASGQFRPLTR 877
Query: 177 KRAAEILYGLGFN-KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235
K E LG + + + + R SGG ++++ LA + P +++LDEPTN+LD ++
Sbjct: 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
Query: 236 VWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
L + LK+F+ +++I+HS +F + + +++ ++ N+
Sbjct: 938 GALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 6e-46
Identities = 93/536 (17%), Positives = 193/536 (36%), Gaps = 79/536 (14%)
Query: 55 ISDRTCTGV-LCSHPLSRD-IRIESLSVTFHGH--------DLIVDSELELNYGRRYGLL 104
I + +CTG +C H + I I +L ++ + G G++
Sbjct: 64 IQEASCTGCGICVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIV 123
Query: 105 GLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL---- 160
G NG GK+T + + ++ + + ++G +
Sbjct: 124 GPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183
Query: 161 ------ERVYERL-EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213
+ V ++ E L + E++ L + ++ SGG R+A+A A
Sbjct: 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD-RELHQLSGGELQRVAIAAA 242
Query: 214 LFINPTILLLDEPTNHLDLEACV---WLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQ 270
L DEP+++LD+ + + L + ++V+ H L+ + I +
Sbjct: 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302
Query: 271 NKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSK 330
+ G + + + + + I F G K + +
Sbjct: 303 GEP-----GVYGIFSKPKGT-------------------RNGINEFLQGYLK-DENVRFR 337
Query: 331 EKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGV 390
+ + L+E+V ++ + + + K + + +
Sbjct: 338 PYEIRFTK---LSERVDVERETLVEYPRLVK---------------DYGSFKLEVEPGEI 379
Query: 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSAL 450
+ +VGPNG GK+T +K++ G P +G V L +A Q++ K + + +
Sbjct: 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYI--KAEYEGTVY 435
Query: 451 QYMIKEYPG--NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL 508
+ + K N + G+ +LS G+ RV A R + L
Sbjct: 436 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-DLSGGELQRVAIAATLLRDADIYL 494
Query: 509 LDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
LDEP+ +LD+E +++ A+ + + ++V HD +I+ V+ + V E +
Sbjct: 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPG 550
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 7e-39
Identities = 81/501 (16%), Positives = 177/501 (35%), Gaps = 72/501 (14%)
Query: 82 FHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE--R 139
F L G+LG NG GK+T+L + + + + DE R
Sbjct: 14 FKLFGLPTPKN-----NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKR 68
Query: 140 LKLEKEAEILGAQEDGGGEQ--------LERVYERL-----EALDASTAEKRAAEILYGL 186
+ ++ +E E +E + L E L + E+ L
Sbjct: 69 FRGKEIYNYF--KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL 126
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
K SGG R+ +A +L + + D+P+++LD+ + + + +++
Sbjct: 127 NMTNLWN-KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 246 -DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQE 304
++ ++V+ H L+ + I + + + G
Sbjct: 186 KNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY--GRV----------------------S 221
Query: 305 QIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPP 364
+ + + I F K E + +K + +D+ K
Sbjct: 222 KSYAARVGINNF--------------LKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLK 267
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
+++ ++ L+ N + + ++GPNG GK+T +++ G++ +G V
Sbjct: 268 TKMKWTKIIKKLGDFQLVVDNGEA--KEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
Query: 425 RRHNHLRIAQFHQHLAEKLDMDMSA-LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPM 483
++ Q + D + L+ K+ R L +
Sbjct: 326 TP-EKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN----EWDGGLVLVS 539
+LS G+ ++ A ++ + +LD+P+++LD+E +A+A+ E ++
Sbjct: 385 -DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 540 HDFRLINQVAHEIWVCENQAV 560
HD + + +A I V + +
Sbjct: 444 HDLSIHDYIADRIIVFKGEPE 464
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 17/223 (7%)
Query: 66 SHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEAS 124
S L ++ + L+VD+ E G G+LG NG GK+T + GEI A
Sbjct: 263 SKDLKTKMKWTKIIKKLGDFQLVVDN-GEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321
Query: 125 DMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILY 184
E ++ +++ L K I + + LE + +AL S E+
Sbjct: 322 -----EGSVTPEKQILSY-KPQRIFPNYDGTVQQYLENASK--DALSTS--SWFFEEVTK 371
Query: 185 GLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE--ACVW--LEE 240
L ++ ++ D SGG ++ +A L + +LD+P+++LD+E V ++
Sbjct: 372 RLNLHRLLE-SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKR 430
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
++ + +I H + + II + + K
Sbjct: 431 VTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 39/210 (18%), Positives = 86/210 (40%), Gaps = 30/210 (14%)
Query: 371 EVTFGYTPDNLIYKNLDFGVDLD-SRVALVGPNGAGKSTLLKLMTGDLVP----LDGMVR 425
EV Y + K + + + ++G NG GK+T+LK++ G+++P + V
Sbjct: 4 EVIHRYKVNGF--KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 426 RHNHLR------IAQFHQHLAEK----------LDMDMSALQYMIKEYPGNEEEKMRAAI 469
+ L+ I + + L ++ L+ + E + R
Sbjct: 62 KDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNE--ILTKIDERGKK 119
Query: 470 GR-FGLTGKAQVM--PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
L + LS G R++ A R+ + + D+P+++LD+ ++A+
Sbjct: 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179
Query: 527 ALNEW--DGGLVLVSHDFRLINQVAHEIWV 554
A+ E + +++V HD +++ + I +
Sbjct: 180 AIRELLKNKYVIVVDHDLIVLDYLTDLIHI 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-34
Identities = 91/542 (16%), Positives = 175/542 (32%), Gaps = 85/542 (15%)
Query: 55 ISDRTCTGV-LCSHPLSRD-IRIESLSVTFHGH--------DLIVDSELELNYGRRYGLL 104
IS+ C G +C D I+I +L H + G+ GL+
Sbjct: 50 ISEILCIGCGICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLV 109
Query: 105 GLNGCGKSTLLTAI-GEIEAS----DMSSLEAVISCDEERLKLEKEAEILGAQEDG---- 155
G NG GKST L + G+ + + D I +L+ + +
Sbjct: 110 GTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169
Query: 156 ----------GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR 205
+++V E L L + + + L ++ + SGG
Sbjct: 170 PQYVDNIPRAIKGPVQKVGELL-KLRMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGEL 227
Query: 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV 262
R A+ + + + DEP+++LD++ + + ++ + ++ + H L+ +
Sbjct: 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL 287
Query: 263 CTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAK 322
+ + + G AS++E I F G
Sbjct: 288 SDFVCIIYGVPSVY--GVV----------------------TLPASVREGINIFLDGHIP 323
Query: 323 LARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLI 382
A + + + L + F + T + +
Sbjct: 324 -AENLRFRTEALQFRIADATEDLQNDSASRAFSYPS---------------LKKTQGDFV 367
Query: 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK 442
+ + ++G NG GK+TL+KL+ G L P +G L ++ Q +A
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP--KLNVSMKPQKIA-- 423
Query: 443 LDMDMSALQYMIKEYPGNEEEKMRAA--IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500
+ Q K+ G + + +LS G+ RV
Sbjct: 424 PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-HLSGGELQRVAIVLAL 482
Query: 501 YRQPHMLLLDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCE 556
+ L+DEP+ +LD E ++ + +V HDF + +A ++ V E
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542
Query: 557 NQ 558
Sbjct: 543 GI 544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-19
Identities = 37/199 (18%), Positives = 83/199 (41%), Gaps = 18/199 (9%)
Query: 82 FHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEERL 140
G ++ E E + ++G NG GK+TL+ + G ++ + D +L
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ--------DIPKL 413
Query: 141 KLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDF 200
+ + + + + G QL ++++ + +++ L + + ++ +
Sbjct: 414 NVSMKPQKIAPKFPGTVRQL--FFKKIR--GQFLNPQFQTDVVKPLRIDDIID-QEVQHL 468
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQ 256
SGG R+A+ AL I I L+DEP+ +LD E + + +++F + ++ H
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528
Query: 257 DFLNGVCTNIIHMQNKQLK 275
+ +I + K
Sbjct: 529 IMATYLADKVIVFEGIPSK 547
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 92/493 (18%), Positives = 180/493 (36%), Gaps = 89/493 (18%)
Query: 98 GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGG 157
G G++G NG GKST + + ++ + ++ + E+ E
Sbjct: 47 GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW---DGVIRAFRGNELQNYFEKLKN 103
Query: 158 EQLERVY--------------ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGG 203
++ V + +E L + + E++ L ++ ++ + SGG
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE-REIQHLSGG 162
Query: 204 WRMRIALARALFINPTILLLDEPTNHLDLEA---CVWLEETLKKFDRILVVISHSQDFLN 260
R+A+A AL N T DEP+++LD+ L + + ++V+ H L+
Sbjct: 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD 222
Query: 261 GVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGS 320
+ I + + + G F Q TR+ + E
Sbjct: 223 YLSDIIHVVYGEPGVY--GIFSQPKGTRNGINE--------------------------- 253
Query: 321 AKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDN 380
+KD+ + FR ++ +E T
Sbjct: 254 ---------------------FLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPR 292
Query: 381 LIYKNLDFGVDLDS-------RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIA 433
L+ F ++++ + +VGPNG GK+T +K++ G P +G + L +A
Sbjct: 293 LVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVA 350
Query: 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA--IGRFGLTGKAQVMPMKNLSDGQR 491
Q++ K D + + + + K + G+ LS G+
Sbjct: 351 YKPQYI--KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-ELSGGEL 407
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQ 547
RV A R + LLDEP+ +LD+E +++ A+ + + ++V HD +I+
Sbjct: 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 467
Query: 548 VAHEIWVCENQAV 560
V+ + V E +
Sbjct: 468 VSDRLMVFEGEPG 480
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 7e-21
Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 27/209 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMS-SLE 130
+ L + L V+ E+ G G++G NG GK+T + + G E ++ +
Sbjct: 288 VTYPRLVKDYGSFRLEVEP-GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD 346
Query: 131 AVISCDEERLKL---EKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
++ + +K E+L + +L + E+L LG
Sbjct: 347 LTVAYKPQYIKADYEGTVYELLS----------KIDASKLNS------NFYKTELLKPLG 390
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE----ACVWLEETLK 243
++ + SGG R+A+A L + I LLDEP+ +LD+E + ++
Sbjct: 391 IIDLYD-REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 449
Query: 244 KFDRILVVISHSQDFLNGVCTNIIHMQNK 272
K ++ +V+ H ++ V ++ + +
Sbjct: 450 KNEKTALVVEHDVLMIDYVSDRLMVFEGE 478
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 31/211 (14%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDGM 423
+ Y N V V +VGPNG GKST +K++ G L+P
Sbjct: 25 EDCVHRYGV-NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 424 VRRHNHLRIAQFHQHLAEKLDMDMSAL---QY-----------MIKEYPGNEE-EKMRAA 468
R + + + + ++ + QY +I+ +E K+
Sbjct: 84 GVI-RAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV 142
Query: 469 IGRFGLTGKAQVM--PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
+ L V+ +++LS G+ RV A R DEP+++LDI + A
Sbjct: 143 VKALELE---NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR 199
Query: 527 ALNEW---DGGLVLVSHDFRLINQVAHEIWV 554
A+ +++V HD +++ ++ I V
Sbjct: 200 AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHV 230
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 8e-29
Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 38/211 (18%)
Query: 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
++Q ++ I K + + + + L G NGAGK+TLL ++ G
Sbjct: 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 423 MVRRHNHL-------------RIAQFHQHLAEKLDMDMSALQYMI----------KEYPG 459
V + I L EK + +I ++
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 460 NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNH 515
+ + G++ KAQ + LS G++ RV+ A R QP +L+LDEP
Sbjct: 137 EIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIA----RALMGQPQVLILDEPAAG 191
Query: 516 LDIETIDSLAEALNE-----WDGGLVLVSHD 541
LD +SL L+ ++ V+H
Sbjct: 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHF 222
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 4e-21
Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 60/241 (24%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I+++ + G ++ ++ G ++ L GLNG GK+TLL + ++ E
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL--------NAYEP- 72
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERL---------------EALDA----- 172
+ G G E V + + +D
Sbjct: 73 --------ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124
Query: 173 -----------STAEKRAAEILYGLGFNKTMQAKKTRDF---SGGWRMRIALARALFINP 218
A ++L +G M AK + S G + R+ +ARAL P
Sbjct: 125 FKSIGVYQDIDDEIRNEAHQLLKLVG----MSAKAQQYIGYLSTGEKQRVMIARALMGQP 180
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFDR-----ILVVISHSQDFLNGVCTNIIHMQNKQ 273
+L+LDEP LD A L L ++ ++H + + + I+ +++ Q
Sbjct: 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
Query: 274 L 274
Sbjct: 241 S 241
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 50/191 (26%), Positives = 72/191 (37%), Gaps = 28/191 (14%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDL-----VPLDGMVRRHNHLRIAQFHQHL 439
+ + R + LVGPNGAGKSTLL M G + G + + H
Sbjct: 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAG--QPLEAWSATKLALHR 75
Query: 440 A-----EKLDMDMSALQY-MIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493
A + Y + ++ E + G L K LS G+ R
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQR 134
Query: 494 VVFA-------WLAYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFR 543
V A A +LLLDEP N LD+ +D + AL++ +V+ SHD
Sbjct: 135 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN 194
Query: 544 LINQVAHEIWV 554
+ AH W+
Sbjct: 195 HTLRHAHRAWL 205
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 6e-12
Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 34/178 (19%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
++++ ++ + E+ G L+G NG GKSTLL + G
Sbjct: 5 MQLQDVA----ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAG 60
Query: 132 VISCDEERLKLEKEAEILG--AQEDGGGEQLERVYE-----RLEALDASTAEKRAAEILY 184
E K A +Q+ V+ + + + ++
Sbjct: 61 Q---PLEAWSATKLALHRAYLSQQQTPPFAT-PVWHYLTLHQHDKTR----TELLNDVAG 112
Query: 185 GLGFNKTMQAKKTRDF---SGGWRMRIALARAL-------FINPTILLLDEPTNHLDL 232
L + K R SGG R+ LA + +LLLDEP N LD+
Sbjct: 113 ALA----LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 30/204 (14%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
L + F Y +N +++ L+F ++ +A++G NG GKSTLL L+ G P+ G +
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 425 RRHNHLRIAQFHQHLAEKLDMDMSALQ--------YM-IKEYPGNEEEKM-RAAIGRFGL 474
+ I Q S L ++ P + + ++ A+ L
Sbjct: 63 EVYQ--SIGFVPQ--FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL 118
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNHLDIET---IDSLAEA 527
T A+ +LS GQR + +A R + ++LLDEPT+ LD+ + SL
Sbjct: 119 THLAK-REFTSLSGGQRQLI---LIA-RAIASECKLILLDEPTSALDLANQDIVLSLLID 173
Query: 528 LNEWDG-GLVLVSHDFRLINQVAH 550
L + +V +H NQV
Sbjct: 174 LAQSQNMTVVFTTHQ---PNQVVA 194
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 7e-14
Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 61/235 (25%)
Query: 73 IRIESLSVTFHGHDLIV-DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIE- 122
+ +E+L + + + +LN G +LG NGCGKSTLL + G+IE
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 123 -------------ASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169
S L+ V+ + + + + L+
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP---------KSHDYQVAMQALDY 115
Query: 170 LD-ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
L+ A++ + SGG R I +ARA+ ++LLDEPT+
Sbjct: 116 LNLTHLAKREFTSL------------------SGGQRQLILIARAIASECKLILLDEPTS 157
Query: 229 HLDL--EACVW--LEETLKKFDRILVVISHSQDFLNGV---CTNIIHMQNKQLKF 276
LDL + V L + + + +V +H N V + + + KF
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTH---QPNQVVAIANKTLLLNKQNFKF 209
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 3e-19
Identities = 74/561 (13%), Positives = 172/561 (30%), Gaps = 157/561 (27%)
Query: 54 QISDRTCTGVLCSHPLSRDIRIES-LSVT-FHGHDLIVDSELELNYGRRYGLLGLNGCGK 111
Q S T + L D ++ + +V+ + + + LEL + + G+ G GK
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 112 STLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEI----LGAQEDGGG--EQLERVYE 165
+ + A+ C +++ + + +I L E L+++
Sbjct: 164 TWV----------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225
+++ S ++ + L + + +R L + N +L+L
Sbjct: 208 QIDPNWTSRSDHSSNIKL------RIHSIQA--------ELRRLLKSKPYEN-CLLVLLN 252
Query: 226 PTNHLDLEACVWLEETLKKFD---RILVVISHSQ--DFLNGVCTNIIHMQNKQLKFYTGN 280
V + F+ +IL+ Q DFL+ T I + + +
Sbjct: 253 ----------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 281 ----FDQYVQTR-SELEENQMKQYKWEQEQI---------ASMKEYIARFGHGSAKLARQ 326
+Y+ R +L E S+++ +A + +
Sbjct: 303 VKSLLLKYLDCRPQDLPR--------EVLTTNPRRLSIIAESIRDGLATWDN----WKHV 350
Query: 327 AQSKEKTLAKMERGGLTEKVVK---DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIY 383
K T+ + L + D++ VF +P +L LI+
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSA-HIPTILLS------------LIW 396
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN-HLRIAQFHQHLAEK 442
++ + L K +L++ P + + + +L L +
Sbjct: 397 FDVIKSDVMVVVNKLH------KYSLVE---KQ--PKESTISIPSIYLE---LKVKLENE 442
Query: 443 LDMDMSAL-QYMI-KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500
+ S + Y I K + ++ + D ++ +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDD--------------------LIPPYLDQ----YFYSHIG 478
Query: 501 YRQPHMLLLDE-------PTNHLDIETIDS-LAEALNEWD--GGLVLVSHDFRLINQVAH 550
+ H+ ++ LD ++ + W+ G ++ + +
Sbjct: 479 H---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----Y 530
Query: 551 EIWVCENQAV-TRWEGDIMDF 570
+ ++C+N R I+DF
Sbjct: 531 KPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 50/351 (14%), Positives = 98/351 (27%), Gaps = 104/351 (29%)
Query: 228 NHLDLEAC-----------VWLEETLKKFDRILVVISHSQDFLNGVCTN-----IIHMQN 271
+H+D E V+ + + FD QD + + II ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 272 KQLKFYTGNFDQYVQTRSE-----LEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQ 326
F + + E +EE YK+ I E +
Sbjct: 60 AVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQP--------SMM 108
Query: 327 AQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNL 386
+ + ++ V K V R P L+ + P
Sbjct: 109 TRMYIEQRDRLYNDN----QVFAKYNVSR-------LQPYLKLRQALLELRP-------- 149
Query: 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQF-----HQHLAE 441
V + G G+GK+ + D V L V+ +I F + + E
Sbjct: 150 ------AKNVLIDGVLGSGKTWV----ALD-VCLSYKVQCKMDFKI--FWLNLKNCNSPE 196
Query: 442 KLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQ-RSRVVFAWLA 500
+ + L Y I + + + Q R +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSN--------------IKLRIHSIQAELRRLLKSKP 242
Query: 501 YRQPHMLL-LDEPTNHLDIETIDSLAEALNEWDGG--LVLVSHDFRLINQV 548
Y + LL L +++ A+A N ++ ++L + ++ + +
Sbjct: 243 Y--ENCLLVLL------NVQN----AKAWNAFNLSCKILLTTRFKQVTDFL 281
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
+L+ E+ + Y+ K ++ + A++G NG GKSTL + G L P G +
Sbjct: 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 425 R---------RHNHLRIAQ-----F----HQHLAEKLDMDMS-ALQYMIKEYPGNE-EEK 464
R +++ + F +Q + + D+S M + P +E ++
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM--KLPEDEIRKR 123
Query: 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLD------ 517
+ A+ R G+ LS GQ+ RV A L P +L+LDEPT LD
Sbjct: 124 VDNALKRTGIEHLKDKPT-HCLSFGQKKRVAIAGVLVME-PKVLILDEPTAGLDPMGVSE 181
Query: 518 -IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
++ + + + E +++ +HD ++ ++V
Sbjct: 182 IMKLLVEMQK---ELGITIIIATHDIDIVPLYCDNVFV 216
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 73 IRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEA 123
+++E L+ + G + + + G +LG NG GKSTL G I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 124 SDMSSLEAVISCDEERLK-LEKEAEILGAQ--EDGGGEQL--ERVYE------RLEALDA 172
+ I + + L + I+ Q ++ QL VY+ L
Sbjct: 68 DNKP-----IDYSRKGIMKLRESIGIV-FQDPDN----QLFSASVYQDVSFGAVNMKLPE 117
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTR---DFSGGWRMRIALARALFINPTILLLDEPTNH 229
KR L G ++ K + S G + R+A+A L + P +L+LDEPT
Sbjct: 118 DEIRKRVDNALKRTG----IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 230 LDLEACVWLEETLKKFDRI----LVVISHSQDFLNGVCTNIIHMQN 271
LD + + L + + +++ +H D + C N+ M+
Sbjct: 174 LDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-17
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 21/172 (12%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQ 437
+ + ++ + V GPNG GK+TLLK ++ L PL G + + +I +
Sbjct: 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85
Query: 438 HLAEKLDMDMSALQYM-----IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492
+ + +S Y+ + N + ++ A+ + + + LS G
Sbjct: 86 EII--VPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDLKK--KLGELSQGTIR 140
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETI----DSLAEALNEWDGGLVLVSH 540
RV A + +LD+P +D ++ S+ E L E G +++ S
Sbjct: 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 3e-16
Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 18/191 (9%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ I LSV + ++ + + G G NG GK+TLL I ++ E
Sbjct: 11 LEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEI 66
Query: 132 VISCDEERLKLEKEAEILG-AQEDGGGEQLERVYERLEAL----DASTAEKRAAEILYGL 186
+ + + K + E+ + V + L+A+ + + L +
Sbjct: 67 IY----NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
KK + S G R+ LA L +N I +LD+P +D ++ + +++ +
Sbjct: 123 EVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 246 -DRILVVISHS 255
++ +V+IS
Sbjct: 181 KEKGIVIISSR 191
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 22/208 (10%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I+++++ +T G + LE+N G + +LG NG GK+TLL AI +
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY---- 56
Query: 129 LEAVISCDEERL-KLEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRAAE 181
I + + K+ E V + L+ LD E
Sbjct: 57 -SGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLD----RDLFLE 110
Query: 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET 241
+L L + + +K S G + + + AL P I+ LDEP ++D +
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170
Query: 242 LKKFDRILVVISHSQDFLNGVCTNIIHM 269
+K++ + ++++H D LN +
Sbjct: 171 IKEYGKEGILVTHELDMLNLYKEYKAYF 198
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 9e-14
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 370 VEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR--- 425
V +T + +N++ V+ +V ++GPNG+GK+TLL+ ++G L+P G +
Sbjct: 7 VGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFING 64
Query: 426 ------RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ 479
R+ + + + ++ + Y+ +E G + + + L +
Sbjct: 65 MEVRKIRNYIRYSTNLPEAYE--IGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL 122
Query: 480 VMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLV 538
+ LS GQ V + LA QP ++ LDEP ++D ++ + E+ +LV
Sbjct: 123 RRKLYKLSAGQSVLVRTSLALA-SQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILV 181
Query: 539 SHD 541
+H+
Sbjct: 182 THE 184
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR------RHNHLRIAQFHQ 437
K + F ++ L+GPNGAGK+T L++++ + P G+V + +
Sbjct: 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91
Query: 438 HLAEK--LDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDG 489
+L E+ +M ++Y+ +E EE + A GL K + + S G
Sbjct: 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKG 150
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530
+++ A P + +LDEPT+ LD+ + + L +
Sbjct: 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 4e-14
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 8/179 (4%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLE 130
+ ++ L G I+ E+ G +GL+G NG GK+T L I I+ S
Sbjct: 16 VVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 131 AVISCDEERLKLEKE----AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGL 186
+ EE ++ K E GA + G + R A +S E+
Sbjct: 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 134
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245
G + + +S G ++ +ARAL +NP + +LDEPT+ LD+ + + LK+
Sbjct: 135 GLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 367 LQFVEVTFGYTPDNLIY----KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--- 419
++ V V+ + + +N+ ++ + + G G+GKSTLL+++ G + P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 420 ---LDGMVRRHNHLR-----IAQF--HQHLAEKLDMDMS-ALQYMIKEYPGNEEEKMRAA 468
DG ++ +R Q+ Q AE++ +++ A++ + ++ A
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKA 120
Query: 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLD---IETID 522
+ GL +P LS G++ RV A + + P +L+LDEP LD +
Sbjct: 121 MEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVIVHE-PDILILDEPLVGLDREGKTDLL 178
Query: 523 SLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
+ E ++L+SHD + + V
Sbjct: 179 RIVEKWKTLGKTVILISHDIETVINHVDRVVV 210
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 41/221 (18%), Positives = 74/221 (33%), Gaps = 67/221 (30%)
Query: 93 LELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEASDMSSLEAVISCDEERLKLEK 144
L +N G + G G GKSTLL + G++ ++ ++ +
Sbjct: 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---------RKKGYEIRR 78
Query: 145 ------------------EAEI------LGAQEDGGGEQLERVYERLEA--LDASTAEKR 178
E+ + + V + +E LD + + R
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR----DPVPLVKKAMEFVGLDFDSFKDR 134
Query: 179 AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL 238
L SGG + R+A+A + P IL+LDEP LD E L
Sbjct: 135 VPFFL-----------------SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177
Query: 239 EET---LKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276
K + +++ISH + + ++ ++ + F
Sbjct: 178 LRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 7e-14
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 47/209 (22%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-------RIAQ--- 434
+ V+ ++GPNG+GKSTL+ ++TG L +G V N +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 435 ---FHQHLAEKLDMDMSALQYM---------------IKEYPGNEEEKMRA----AIGRF 472
F Q + +M+ L+ + + +EE+M +
Sbjct: 85 VRTF-QTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPT---NHLDIETIDSLA 525
L+ LS GQ V R P M+++DEP I +
Sbjct: 142 KLSHLYD-RKAGELSGGQMKLVEIG----RALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 526 EALNEWDGGLVLVSHDFRLINQVAHEIWV 554
L +++ H ++ ++V
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYV 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 58/235 (24%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTL---LTAI-----GEI--- 121
+R E++ F + + +N G ++G NG GKSTL +T G +
Sbjct: 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67
Query: 122 -------------------------EASDMSSLEAVISCDEERLKLEKEAEILGAQEDGG 156
+M+ LE ++ + + +
Sbjct: 68 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 127
Query: 157 GEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF 215
E +E+ ++ LE L + +++A + SGG + + RAL
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKA------------------GELSGGQMKLVEIGRALM 169
Query: 216 INPTILLLDEPT---NHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNII 267
NP ++++DEP LK ++I H D + ++
Sbjct: 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 224
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 44/194 (22%)
Query: 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVPLD 421
+F V F Y +++ F V +ALVGP+GAGKST+L+L+ + + +D
Sbjct: 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 422 GM-VRR------HNHLRIAQ-----FHQHLAEKLDMDMSALQYMIKEY--PGNEEEKMRA 467
G + + +H+ + F+ +A+ + Y +++ A
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI------------RYGRVTAGNDEVEA 162
Query: 468 AIGRFGLTGKAQVMP-----------MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
A G+ P +K LS G++ RV A + P ++LLDE T+ L
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 517 DIETIDSLAEALNE 530
D ++ +L +
Sbjct: 222 DTSNERAIQASLAK 235
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + R+A+AR + P I+LLDE T+ LD ++ +L K +R +V++H
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH 247
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 70/197 (35%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI-- 121
I + + G V ++ G GLLG +G GK+T+L I G++
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 122 EASDMSSLEAVISCDEER------------------------LKLEK--EAEILGAQEDG 155
++ L ++R L+ ++ + E+
Sbjct: 75 GGKRVTDLPP-----QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD------ 123
Query: 156 GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF 215
RV E L + + R + SGG + R+ALARAL
Sbjct: 124 -----ARVRELLRFMRLESYANR-----------------FPHELSGGQQQRVALARALA 161
Query: 216 INPTILLLDEPTNHLDL 232
P +LL DEP +D
Sbjct: 162 PRPQVLLFDEPFAAIDT 178
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
++FV V Y + + F + V L+GP+G+GK+T+L+L+ G P G V
Sbjct: 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 425 RRHNHLRIAQFHQHLAEKLDMDMS----AL-QYM-----------IKEYPGNE-EEKMRA 467
R+ +K ++ + AL Q+M K P +E + ++R
Sbjct: 73 WIGGK-RVTDLP---PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRE 128
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNHLD 517
+ L A P LS GQ+ RV A R +P +LL DEP +D
Sbjct: 129 LLRFMRLESYANRFP-HELSGGQQQRVALA----RALAPRPQVLLFDEPFAAID 177
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 39/193 (20%)
Query: 382 IYKNLDF--GVDLDSR----VALVGPNGAGKSTLLKLM------TGDLVPLDGM-VRRHN 428
+ + + G+ L + V+++G +G+GKSTLL ++ T V L+G V N
Sbjct: 13 VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN 72
Query: 429 -----HLR------IAQFHQHLAEKLDMDMSALQ-----YMIKEYPGNE-EEKMRAAIGR 471
LR + QFH + E ++AL+ + P E +E+ +
Sbjct: 73 EKELSLLRNRKLGFVFQFHYLIPE-----LTALENVIVPMLKMGKPKKEAKERGEYLLSE 127
Query: 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEAL 528
GL K P + LS G++ RV A +P +L DEPT +LD + + +
Sbjct: 128 LGLGDKLSRKPYE-LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 529 NEWDGGLVLVSHD 541
NE +V+V+H+
Sbjct: 187 NEGGTSIVMVTHE 199
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229
A++R +L LG + K SGG + R+A+ARAL P +L DEPT +
Sbjct: 112 KPKKEAKERGEYLLSELGLGDKLSRKPYE-LSGGEQQRVAIARALANEPILLFADEPTGN 170
Query: 230 LDLEACVWLEETLKKFDRI------LVVISHSQDFLNGVCTNIIHMQ 270
LD + + F +I +V+++H ++ L + + M+
Sbjct: 171 LDSANT---KRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEMK 213
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 4e-11
Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 67/197 (34%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVP 419
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 420 LDGM-VRRHN--HLR-----IAQ----FHQHLAE-----KLDMDMSALQYMIKEYPGNEE 462
+DG + + LR + Q ++ + + M + E
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV--------------E 113
Query: 463 EKMRAA-------------------IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503
+ + AA +G G LS GQR R+ A
Sbjct: 114 KVIYAAKLAGAHDFISELREGYNTIVGEQGA----------GLSGGQRQRIAIARALVNN 163
Query: 504 PHMLLLDEPTNHLDIET 520
P +L+ DE T+ LD E+
Sbjct: 164 PKILIFDEATSALDYES 180
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG R RIA+ARAL NP IL+ DE T+ LD E+ + + K R +++I+H
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH 202
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 51/188 (27%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEIEAS 124
+ I LS +F ++ D L L+ G ++G +GCGK+TLL + GEI S
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 125 DMSSLEAVISCDEERLKLEK------------------EAEI---LGAQEDGGGEQLERV 163
I L + + I LG + ++ +R+
Sbjct: 65 G-----KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI 119
Query: 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223
LE L G+ + + + SGG + R ALARAL +P ++LL
Sbjct: 120 EAMLE--------------LTGIS---ELAGRYPHELSGGQQQRAALARALAPDPELILL 162
Query: 224 DEPTNHLD 231
DEP + LD
Sbjct: 163 DEPFSALD 170
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 30/180 (16%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHL-AEKL 443
+ L + ++G +G GK+TLL+ + G P G + I + +L +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK-TIFSKNTNLPVRER 80
Query: 444 DMDM-----------SALQ---YMIKEYPGNEEEKMR---AAIGRFGLTGKAQVMPMKNL 486
+ + + Y + G ++ + A + G++ A P L
Sbjct: 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-HEL 139
Query: 487 SDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHD 541
S GQ+ R A LA P ++LLDEP + LD + + + AL V VSHD
Sbjct: 140 SGGQQQRAALARALAPD-PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 8e-11
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ + L + GH+++ L+ G ++G +G GKST L I +E E
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGA 62
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERL--------------------EA--- 169
I + + + L ++ + G + QL + RL EA
Sbjct: 63 IIVNGQNINLVRDKD--GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 120
Query: 170 ---LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226
L A +RA + L +G ++ Q K SGG + R+++ARAL + P +LL DEP
Sbjct: 121 VLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180
Query: 227 TNHLDLE 233
T+ LD E
Sbjct: 181 TSALDPE 187
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLM-------TGDLV----PLDGMVRRHNHLRIA 433
GV L +R ++++G +G+GKST L+ + G ++ ++ + + L++A
Sbjct: 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83
Query: 434 QFHQ--HLAEKLDM---------DMSALQYMI------KEYPGNE-EEKMRAAIGRFGLT 475
+Q L +L M M+ L+ ++ ++ E+ + + G+
Sbjct: 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143
Query: 476 GKAQVMPMKNLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLDIE-------TIDSLAEA 527
+AQ +LS GQ+ RV A LA +P +LL DEPT+ LD E + LAE
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAM-EPDVLLFDEPTSALDPELVGEVLRIMQQLAE- 201
Query: 528 LNEWDG-GLVLVSHDFRLINQVAHEIW 553
+G +V+V+H+ V+ +
Sbjct: 202 ----EGKTMVVVTHEMGFARHVSSHVI 224
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 69/246 (28%)
Query: 360 GKLPPPV---LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM- 413
P + ++F +V+F Y P+ + + L F + ALVGPNG+GKST+ L+
Sbjct: 7 SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 414 -----TGDLVPLDGM-VRRHNHLRIAQFHQHLA----EKLDMDMSALQYMIKE-----YP 458
TG V LDG + +++H H +A E L S +E
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDH---HYLHTQVAAVGQEPLLFGRS-----FRENIAYGLT 118
Query: 459 GN--EEEKMRAA-------------------IGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497
EE A +G G LS GQR V A
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ----------LSGGQRQAVALA 168
Query: 498 WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLVSHDFRL--INQVAHE 551
R+P +L+LD T+ LD + L E +L++ +L + AH
Sbjct: 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ--QLSLA-ERAHH 225
Query: 552 IWVCEN 557
I +
Sbjct: 226 ILFLKE 231
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL--EACVW--LEETLKKFDRILVVISH 254
SGG R +ALARAL P +L+LD T+ LD + V L E+ + R +++I+
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-10
Identities = 44/182 (24%), Positives = 61/182 (33%), Gaps = 67/182 (36%)
Query: 93 LELNYGRRYG----------------LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCD 136
L++ +R G LLG G GKS L I I D
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD----------- 51
Query: 137 EERLKLEKEAEILGAQEDGGGEQLERV--YER------------------------LEAL 170
E+ G + + R L +
Sbjct: 52 --------RGEVRL-----NGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
+ ++R E+ LG + +K SGG R R+ALARAL I P +LLLDEP + +
Sbjct: 99 ERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 231 DL 232
DL
Sbjct: 158 DL 159
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 387 DFGVDLDSR-----VALVGPNGAGKSTLLKLMTGDLVPLDGMV----RRHNHLR-----I 432
+F +++D L+GP GAGKS L+L+ G + P G V L I
Sbjct: 13 NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI 72
Query: 433 AQFHQHLAEKLDMDMSALQ---YMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSD 488
Q A L +S + Y ++ E + ++R + G+ P LS
Sbjct: 73 GFVPQDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSG 129
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
G+R RV A QP +LLLDEP + +D
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 38/226 (16%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I++ +++ FH + + L + G+ YG++G +G GKSTL+ + +E
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--- 81
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGG-----GEQLER--VYE------RLEALDASTA 175
E + D + L E+E+ A+ G L V+ L+
Sbjct: 82 -EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 176 EKRAAEILY--GLGFNKTMQAKKTRDF----SGGWRMRIALARALFINPTILLLDEPTNH 229
++R E+L GL K + SGG + R+A+ARAL NP +LL D+ T+
Sbjct: 141 KRRVTELLSLVGL-------GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 230 LDLEACVWLEETLKKFDRIL----VVISHSQDFLNGVCTNIIHMQN 271
LD + E LK +R L ++I+H D + +C + + N
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN 239
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--------------DLVPLDGMVRRHNH 429
N+ V ++G +GAGKSTL++ + +L L
Sbjct: 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 104
Query: 430 LRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKN 485
+I QH L+ + AL + P +E + ++ + GL K P N
Sbjct: 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SN 163
Query: 486 LSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDS---LAEALNEWDGGL--VLVS 539
LS GQ+ RV A LA P +LL D+ T+ LD T S L + +N GL +L++
Sbjct: 164 LSGGQKQRVAIARALASN-PKVLLCDQATSALDPATTRSILELLKDINR-RLGLTILLIT 221
Query: 540 HDFRLINQVAHEIWVCEN 557
H+ ++ ++ + V N
Sbjct: 222 HEMDVVKRICDCVAVISN 239
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 24/121 (19%)
Query: 305 QIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVD------ 358
IA+ Y +F +L+ Q + LA ER +F +D
Sbjct: 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAER-------------IFEILDLEEEKD 341
Query: 359 --VGKLPPPV---LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM 413
V ++F V F Y + K++ F + +VALVGP G+GK+T++ L+
Sbjct: 342 DPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 414 T 414
Sbjct: 402 M 402
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 163 VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222
+++ A+ KRA E L + K SGG + R+A+ARAL NP I+L
Sbjct: 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 223 LDEPTNHLD 231
D+PT LD
Sbjct: 169 ADQPTWALD 177
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 6e-08
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 50/193 (25%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLM------TGDLVPLDGM------------VRR 426
V+L+ + V+++GP+G+GKST+L ++ T V +D + +RR
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 427 HNHLRIA----QFHQHLAEKLDMDMSALQ-------YMIKEYPGNEEEKMRA--AIGRFG 473
+I QF+ L ++AL+ + + EE + RA +
Sbjct: 83 D---KIGFVFQQFN------LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 474 LTGKAQV-MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALN 529
L + P + LS GQ+ RV A P ++L D+PT LD +T I L + LN
Sbjct: 134 LEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 530 EWDGG-LVLVSHD 541
E DG +V+V+HD
Sbjct: 193 EEDGKTVVVVTHD 205
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-09
Identities = 30/215 (13%), Positives = 79/215 (36%), Gaps = 26/215 (12%)
Query: 71 RDIRIESLSVTFHGHDLIVDSELELN-----YGRRYGLLGLNGCGKSTLLTAIGEIEASD 125
+ + S + ++ + LN G+ +L + + ++ + ++ +
Sbjct: 109 KHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEA-REKVVREVLNLDKFE 167
Query: 126 MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEIL-- 183
+ + E ++ + L ++ E + A E + +E++
Sbjct: 168 TAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVR 227
Query: 184 -------YGLGFNKTMQAKKTRDFSGGWRMRIALA------RALFINPTILLLDEPTNHL 230
+ + + SGG R+ + LA L ++L+LDEPT +L
Sbjct: 228 AEENKVRLFVVWEGKERPLTF--LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 285
Query: 231 DLEACVWLEETLKKFDRI---LVVISHSQDFLNGV 262
D E L ++++ + ++++SH ++ +
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 423 MVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG----RFGLTGKA 478
L + E+ + ++ R + +
Sbjct: 182 GTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEG 241
Query: 479 QVMPMKNLSDGQRSRVVFA-------WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531
+ P+ LS G+R + A +LA +L+LDEPT +LD E L + +
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEIS-LLILDEPTPYLDEERRRKLITIMERY 300
Query: 532 DGG---LVLVSHDFRLINQVAHEIWV 554
++LVSHD L + H I +
Sbjct: 301 LKKIPQVILVSHDEELKDAADHVIRI 326
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 47/195 (24%), Positives = 70/195 (35%), Gaps = 71/195 (36%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI-- 121
I IESLS + + +D+ L++ G + +LG G GK+ L I G I
Sbjct: 2 IEIESLSRKWK--NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 122 EASDMSSLEAVISCDEER------------------------LKLEKEAEILGAQEDGGG 157
+ D++ L E+ ++++K
Sbjct: 60 DGKDVTDLSP-----EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI------------ 102
Query: 158 EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217
+ +RV + L R SGG + R+ALARAL N
Sbjct: 103 KDPKRVLDTARDLKIEHLLDR-----------------NPLTLSGGEQQRVALARALVTN 145
Query: 218 PTILLLDEPTNHLDL 232
P ILLLDEP + LD
Sbjct: 146 PKILLLDEPLSALDP 160
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 35/173 (20%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV- 424
+++ ++ + N NL V+ ++GP GAGK+ L+L+ G VP G +
Sbjct: 1 MIEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 425 ---RRHNHLRIAQFHQHLAEKLDMDMSALQYM----------------IKEYPGNEEEKM 465
+ L EK D+ Y +K+ + +++
Sbjct: 59 LDGKDVTDLS--------PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK--DPKRV 108
Query: 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLD 517
+ P LS G++ RV A L P +LLLDEP + LD
Sbjct: 109 LDTARDLKIEHLLDRNP-LTLSGGEQQRVALARALVTN-PKILLLDEPLSALD 159
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 56/255 (21%), Positives = 84/255 (32%), Gaps = 95/255 (37%)
Query: 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDV------GKLPPPVLQ----FVE 371
L ++ +A + +F +D+ GK + +
Sbjct: 300 ALTSVTSEFQRGMAACQT-------------LFGLMDLETERDNGKYEAERVNGEVDVKD 346
Query: 372 VTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-------GDLVPLDGM 423
VTF Y + ++ F + VALVG +G+GKST+ L T G + LDG
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS-ICLDGH 405
Query: 424 ----VRRHNHLR--IAQFHQH-------------LAEKLDMDMSALQYMIKEYPGNEEEK 464
+ N LR A Q+ A + + E+
Sbjct: 406 DVRDYKLTN-LRRHFALVSQNVHLFNDTIANNIAYAAEGEYT--------------REQI 450
Query: 465 MRAA-------------------IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505
+AA IG G +LS GQR RV A R
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGT----------SLSGGQRQRVAIARALLRDAP 500
Query: 506 MLLLDEPTNHLDIET 520
+L+LDE T+ LD E+
Sbjct: 501 VLILDEATSALDTES 515
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 12/61 (19%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE-------ETLKKFDRILVVIS 253
SGG R R+A+ARAL + +L+LDE T+ LD E+ E + L+K ++ ++VI+
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTES----ERAIQAALDELQK-NKTVLVIA 536
Query: 254 H 254
H
Sbjct: 537 H 537
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 54/207 (26%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLL------------------KLMTGDLVPLD---- 421
K ++ + V ++GP+G+GKST L + L+
Sbjct: 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100
Query: 422 --GMVRRH----NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLT 475
GMV + H+ + L+ A + K E K + + GL
Sbjct: 101 EVGMVFQRFNLFPHMTV----------LNNITLAPMKVRKWPREKAEAKAMELLDKVGLK 150
Query: 476 GKAQVMPMKNLSDGQRSRVVFAW-LAYRQPHMLLLDEPTNHLDIETID-------SLAEA 527
KA P LS GQ RV A LA +P ++L DEPT+ LD E + LA
Sbjct: 151 DKAHAYPDS-LSGGQAQRVAIARALAM-EPKIMLFDEPTSALDPEMVGEVLSVMKQLAN- 207
Query: 528 LNEWDG-GLVLVSHDFRLINQVAHEIW 553
+G +V+V+H+ +V +
Sbjct: 208 ----EGMTMVVVTHEMGFAREVGDRVL 230
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I + L +F +++ + + G ++G +G GKST L + +E D E
Sbjct: 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD----EGE 80
Query: 133 ISCDEERLKLEKEAEILGAQEDGG-----------GEQLERVYE---RLEALDASTAEKR 178
I D LK K+ + +E+ G L + ++ AE +
Sbjct: 81 IIIDGINLK-AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK 139
Query: 179 AAEILYGLGFNKTMQAKKT-RDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE 233
A E+L +G +A SGG R+A+ARAL + P I+L DEPT+ LD E
Sbjct: 140 AMELLDKVGLKD--KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE 193
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 367 LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM 413
++F +V F Y ++ K+++F + + ALVG G+GKST+ KL+
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG R RIA+AR L +P I++ DE T+ LD + ++ ++ +R L++I+H
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKL 412
+L V F Y I +++ F +S +A GP+G GKST+ L
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSL 47
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 5e-08
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG R R+A+ARA NP IL+LDE T LD E+ +++ L R +VI+H
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + RIA+ARAL NP ILLLDE T+ LD E+ ++ L K R +VI+H
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK--FDRILVVISH 254
SGG + RIA+ARAL P ILLLDE T+ LD E+ ++E L K R +VI+H
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 367 LQFVEVTFGY--TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM 413
+QF V F Y P + + L V +ALVG +G GKST+++L+
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 360 GKLPPPV---LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414
G P + L+F + F Y + I K L+ V VALVG +G GKST ++LM
Sbjct: 378 GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 415 GDLVPLDGMVR 425
PLDGMV
Sbjct: 438 RLYDPLDGMVS 448
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 57/292 (19%), Positives = 100/292 (34%), Gaps = 82/292 (28%)
Query: 72 DIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAI-------GEIE 122
+ ++ L+ + + + ++ G+R GLLG G GKSTLL+A GEI+
Sbjct: 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQ 78
Query: 123 --ASDMSSL--------------EAVISCDEERLKL-----EKEAEILGAQEDGGGEQLE 161
S+ + I R L + EI ++ L
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV---GLR 135
Query: 162 RVYERLE-ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
V E+ LD + G S G + + LAR++ I
Sbjct: 136 SVIEQFPGKLDFVLVDG---------GCV----------LSHGHKQLMCLARSVLSKAKI 176
Query: 221 LLLDEPTNHLDLEACVWLEETL-KKF-DRILVVISHSQDFLNGV--CTNIIHM------- 269
LLLDEP+ HLD + TL + F D +++ + + C + +
Sbjct: 177 LLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR---IEAMLECDQFLVIEENKVRQ 233
Query: 270 --------QNKQLKFYTG-------NFDQYVQTRSELEENQMKQYKWEQEQI 306
+F G NF T + +++ Q++ ++Q+
Sbjct: 234 YDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQV 285
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 56/201 (27%)
Query: 363 PPP------VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM-- 413
+ ++T YT N I +N+ F + RV L+G G+GKSTLL
Sbjct: 10 KDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 414 ----TGDLVPLDGM----VRRHNHLR-----IAQ---------------FHQHLAEKLD- 444
G++ +DG+ + R I Q H +++
Sbjct: 70 LLNTEGEIQ-IDGVSWDSITLEQ-WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWK 127
Query: 445 -MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503
D L+ +I+++PG K+ + G LS G + + A +
Sbjct: 128 VADEVGLRSVIEQFPG----KLDFVLVDGG----------CVLSHGHKQLMCLARSVLSK 173
Query: 504 PHMLLLDEPTNHLDIETIDSL 524
+LLLDEP+ HLD T +
Sbjct: 174 AKILLLDEPSAHLDPVT-YQI 193
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 66/198 (33%)
Query: 72 DIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GE- 120
I ++++S F ++ + + + G R+G+LG +G GK+T + I GE
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 121 -IEASDMSSLEAVISCDEER------------------------LKLEK--EAEILGAQE 153
+ ++S +I E+R L K + EI
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR---- 118
Query: 154 DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213
+RV + A+IL + + R+ SG + R+ALARA
Sbjct: 119 -------KRV-------------EEVAKIL-DIH---HVLNHFPRELSGAQQQRVALARA 154
Query: 214 LFINPTILLLDEPTNHLD 231
L +P++LLLDEP ++LD
Sbjct: 155 LVKDPSLLLLDEPFSNLD 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444
V+++ ++GP+GAGK+T ++++ G VP G + + L + + + D
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE-D 81
Query: 445 MD-------------MSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKN 485
++A + + + E +++ + P +
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RE 140
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
LS Q+ RV A + P +LLLDEP ++LD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLD-------LEACVWLEETLKKFDRILVVIS 253
SGG + R++LARA++ N I L D+P + +D E + + LK RILV +
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV--T 186
Query: 254 HSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQ 305
HS +L II M ++ G++ + + E ++ Y
Sbjct: 187 HSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLARDGAFAE-FLRTYASHHHH 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 51/174 (29%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ TF + + + F + + VA+VG G GKS+LL + ++ ++G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 426 RHNHLRIA---------------------QFHQHLAEK------LDMDMSALQYMIKEYP 458
+A Q + L D+ L
Sbjct: 64 IKG--SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPS------ 115
Query: 459 GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512
G+ E IG G+ NLS GQ+ RV A Y + L D+P
Sbjct: 116 GDRTE-----IGEKGV----------NLSGGQKQRVSLARAVYSNADIYLFDDP 154
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 26/114 (22%)
Query: 312 YIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDV--------GKLP 363
Y+ +L + ++ A M+R VF+ +D G P
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDR-------------VFQLIDEDYDIKNGVGAQP 332
Query: 364 PPVLQ----FVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKL 412
+ Q V+F Y + I K+++ ++ VA VG +G GKSTL+ L
Sbjct: 333 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINL 386
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 25/73 (34%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLE-------ACVWLEE------------- 240
SGG + R+++AR NP IL+LDE T+ LDLE A L+
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA---LDVLSKDRTTLIVAHR 535
Query: 241 --TLKKFDRILVV 251
T+ D+I+V+
Sbjct: 536 LSTITHADKIVVI 548
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 47/179 (26%)
Query: 368 QFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR- 425
VT + + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++
Sbjct: 8 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
Query: 426 ------------------RHNHLRIAQFHQHLAEK------LDMDMSALQYMIKEYPGNE 461
+ N + + ++ L+ D+S +
Sbjct: 68 SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE------KDN 121
Query: 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
+G G+ LS GQR+R+ A Y+ + LLD P +LD+ T
Sbjct: 122 IV-----LGEGGI----------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLD-------LEACVWLEETLKKFDRILVVIS 253
SGG R RI+LARA++ + + LLD P +LD E+CV + + RILV +
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMANKTRILV--T 187
Query: 254 HSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEE 293
+ L I+ + FY G F + + +
Sbjct: 188 SKMEHLKK-ADKILILHEGSSYFY-GTFSELQNLQPDFSS 225
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 12/61 (19%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE-------ETLKKFDRILVVIS 253
SGG R RIA+ARAL + IL+LDE T+ LD E+ E + L+K +R +VI+
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTES----ERAIQAALDELQK-NRTSLVIA 536
Query: 254 H 254
H
Sbjct: 537 H 537
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 24/104 (23%)
Query: 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDV------GKLPPPVLQ----FVE 371
L ++ +A + +F +D GK F
Sbjct: 300 SLTNVNAQFQRGMAACQT-------------LFAILDSEQEKDEGKRVIDRATGDLEFRN 346
Query: 372 VTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414
VTF Y + +N++ + VALVG +G+GKST+ L+T
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 44/176 (25%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L F + TP + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++
Sbjct: 41 LSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 427 HNHLRIAQFHQH------------LAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474
RI+ Q+ + D E + R+ I L
Sbjct: 98 SG--RISFCSQNSWIMPGTIKENIIGVSYD-----------------EYRYRSVIKACQL 138
Query: 475 TGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
K LS GQR+R+ A Y+ + LLD P +LD+ T
Sbjct: 139 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLD-------LEACVWLEETLKKFDRILVVIS 253
SGG R RI+LARA++ + + LLD P +LD E+CV + + RILV +
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMANKTRILV--T 216
Query: 254 HSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQ 305
+ L I+ + FY G F + R + M ++Q
Sbjct: 217 SKMEHLKK-ADKILILHEGSSYFY-GTFSELQNLRPDFSSKLMGCDSFDQFS 266
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 158 EQLERVYERLEALDASTAEKRAAEILY--GLGFNKTMQAKKTRDFSGGWRMRIALARALF 215
E ++ S RA E + + + SGG R+ + LA L
Sbjct: 16 ELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF--LSGGERIALGLAFRLA 73
Query: 216 I------NPTILLLDEPTNHLDLEACVWLEETLKKFDRI---LVVISHSQDF 258
+ ++L+LDEPT +LD E L ++++ + ++++SH ++
Sbjct: 74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 125
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 10/177 (5%)
Query: 91 SELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150
E E R G L L + +E + V D+ R +
Sbjct: 173 KEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAY 232
Query: 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210
+E + + E D + + + + + + SGG ++ +AL
Sbjct: 233 LREKYVPLIQKYLNEAFSEFDLPYSFVELTKD-FEVRVHAPNGVLTIDNLSGGEQIAVAL 291
Query: 211 ARALFI-------NPTILLLDEPTNHLDLEACVWLEETLKKFDRI--LVVISHSQDF 258
+ L I ++LDEPT +LD L E +K I +++I+H ++
Sbjct: 292 SLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 9/133 (6%)
Query: 441 EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA--- 497
+ + + L E+ + V+ + NLS G++ V +
Sbjct: 236 KYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRL 295
Query: 498 ----WLAYRQPHMLLLDEPTNHLDIETIDSLAEALN--EWDGGLVLVSHDFRLINQVAHE 551
L + ++LDEPT +LD LAE + +++++H L +
Sbjct: 296 AIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355
Query: 552 IWVCENQAVTRWE 564
I V ++ V++ +
Sbjct: 356 INVKKDGNVSKVK 368
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
K +D V V L+G NGAGK+T L + G + G +
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 52/183 (28%)
Query: 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI--EA 123
++SL V + I +L++ G+ L+G NG GK+T L+AI G+I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 124 SDMSSLEA-------VISCDEER-----LKLEKEAEILGA----QEDGGGEQLERVYE-- 165
D+++ A + E R L + E ++GA ++G LE ++
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVY-ENLMMGAYNRKDKEGIKRDLEWIFSLF 126
Query: 166 -RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224
RL E+ Q T SGG + +A+ RAL P +L++D
Sbjct: 127 PRL-------KERLK-------------QLGGT--LSGGEQQMLAIGRALMSRPKLLMMD 164
Query: 225 EPT 227
EP+
Sbjct: 165 EPS 167
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 67/164 (40%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER----------------------- 139
LLG +G GKSTLL I I +S + DE+
Sbjct: 34 LLGPSGSGKSTLLYTIAGIY--KPTSGKIYF--DEKDVTELPPKDRNVGLVFQNWALYPH 89
Query: 140 ----------LKLEK--EAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
L+L K EI ++V + A++L +
Sbjct: 90 MTVYKNIAFPLELRKAPREEID-----------KKV-------------REVAKML-HID 124
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ + SGG + R+A+ARAL P +LLLDEP ++LD
Sbjct: 125 ---KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLMTGDLVPLDGMV----RRHNHLR-----IAQF 435
++L + +AL+GP+G+GKSTLL + G P G + + L +
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 436 HQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDG 489
Q+ A L M+ + + +++ P E ++K+R + P LS G
Sbjct: 81 FQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSGG 137
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
Q+ RV A ++P +LLLDEP ++LD
Sbjct: 138 QQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 41/154 (26%)
Query: 103 LLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLER 162
LLG +GCGK+T L I +E + S + I ++ + ++ + ++ R
Sbjct: 34 LLGPSGCGKTTTLRMIAGLE--EPSRGQIYI--GDKLVADPEKGIFVPPKD--------R 81
Query: 163 ----------------VYE------RLEALDASTAEKR---AAEILYGLGFNKTMQAKKT 197
VY+ +L + ++R AE+L GL + +K
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-GLT---ELLNRKP 137
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
R+ SGG R R+AL RA+ P + L+DEP ++LD
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 38/159 (23%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLM-------TGDLVPLDGMVRRHNHLRIAQFHQ 437
+ L+ + + L+GP+G GK+T L+++ G + + + +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY-IGD--KLVAD---PEKGI 74
Query: 438 HLAEKLDMD-------------MSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKA 478
+ K D D M+ + +++ P E ++++R GLT
Sbjct: 75 FVPPK-DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL 133
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
P + LS GQR RV R+P + L+DEP ++LD
Sbjct: 134 NRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 44/195 (22%), Positives = 66/195 (33%), Gaps = 67/195 (34%)
Query: 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
IR+ +L F + E+ G LLG +GCGK+T L + I +S E
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY--KPTSGEI 60
Query: 132 VISCDEER---------------------------------LKLEK--EAEILGAQEDGG 156
D+ L+ + + E+
Sbjct: 61 YF--DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVE------- 111
Query: 157 GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216
+RV A L + + +K SGG + R+ALARAL
Sbjct: 112 ----KRV-------------VEIARKL-LID---NLLDRKPTQLSGGQQQRVALARALVK 150
Query: 217 NPTILLLDEPTNHLD 231
P +LL DEP ++LD
Sbjct: 151 QPKVLLFDEPLSNLD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 40/157 (25%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLM-------TGDLVPLDGMVRRHNHLR-----I 432
GV + + VAL+GP+G GK+T L ++ +G++ D N + +
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY-FDD--VLVNDIPPKYREV 77
Query: 433 AQFHQ------HLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQV 480
Q H M+ + + + +E E+++ + +
Sbjct: 78 GMVFQNYALYPH--------MTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR 129
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
P LS GQ+ RV A +QP +LL DEP ++LD
Sbjct: 130 KP-TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 28/151 (18%)
Query: 389 GVDLDSR----VALVGPNGAGKSTLLKLM-------TGDLVPLDGMVRRHNHLR-----I 432
++L + + L+GP+G GK+T L+++ G + R +L I
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGD--RDVTYLPPKDRNI 85
Query: 433 AQFHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNL 486
+ Q A + M+ + + IK++P +E ++++R A + P L
Sbjct: 86 SMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-AQL 142
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
S GQR RV A +P +LL+DEP ++LD
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+ AAE+L + + + SGG R R+A+ARA+ + P +LL+DEP ++LD
Sbjct: 123 RWAAELL-QIE---ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 582 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.82 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.81 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.81 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.81 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.8 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.78 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.78 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.77 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.76 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.76 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.76 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.75 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.74 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.74 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.74 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.73 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.71 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.7 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.69 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.67 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.67 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.66 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.66 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.66 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.65 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.64 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.64 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.63 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.62 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.61 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.61 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.6 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.59 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.58 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.58 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.56 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.56 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.56 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.55 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.54 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.53 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.53 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.51 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.49 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.47 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.46 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.46 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.45 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.43 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.41 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.4 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.38 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.38 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.35 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.33 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.33 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.33 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.32 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.32 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.3 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.29 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.29 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.28 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.24 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.24 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.22 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.22 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.21 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.2 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.19 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.16 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.15 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.15 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.14 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.14 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.14 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.13 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.12 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.12 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.12 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.1 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.1 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.09 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.07 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.07 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.07 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.06 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.06 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.05 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.0 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.99 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.99 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.98 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.98 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.98 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.96 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.95 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.95 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.93 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.92 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.92 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.91 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.91 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.91 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.9 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.87 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.87 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.86 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.85 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.85 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.79 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.79 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.76 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.76 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.74 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.74 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.68 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.66 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.65 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.64 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.64 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.59 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.58 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.57 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.57 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.54 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.53 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.51 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.5 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.5 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.47 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.47 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.45 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.44 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.42 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.42 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.42 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.41 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.41 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.37 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.36 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.35 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.34 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.33 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.31 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.3 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.29 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.28 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.28 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.27 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.21 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.2 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.13 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.12 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.12 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.11 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.07 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.06 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.06 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.06 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.06 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.05 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.05 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.05 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.04 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.04 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.03 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.03 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.97 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.96 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.96 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.92 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.92 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.92 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.91 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.88 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.87 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.86 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.85 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.84 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.83 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.81 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.81 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.8 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.8 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.8 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.78 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.78 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.76 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.76 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.75 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.74 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.74 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.73 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.73 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.72 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.7 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.68 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.68 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.67 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.67 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.66 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.64 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.63 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.63 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.62 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.62 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.6 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.6 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.59 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.58 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.56 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.55 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.54 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.53 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.52 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.46 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.44 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.43 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.4 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.39 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.37 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.37 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.36 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.35 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.35 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.34 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.34 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.29 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.27 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.26 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.22 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.21 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.21 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.17 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.17 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.13 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.09 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.05 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.04 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.04 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.03 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.01 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.98 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.98 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.98 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.94 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.93 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.92 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.92 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.91 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.9 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.86 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.85 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.84 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.83 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.83 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.82 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.81 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.81 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.81 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.81 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.79 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.78 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.76 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.74 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.73 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.71 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.71 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.7 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.69 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.65 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.65 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.63 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.6 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.58 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.58 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.56 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.56 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.56 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.56 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.55 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.54 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.53 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.52 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.51 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.49 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.47 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.47 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.47 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.46 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.42 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.41 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.4 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.4 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.36 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.35 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.35 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.33 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.33 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.29 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.29 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.27 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.23 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.23 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.22 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.17 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.16 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.14 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.12 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.11 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.11 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.1 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.09 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.08 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.07 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.02 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.0 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.98 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.96 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.96 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.94 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.93 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.92 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.91 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.91 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.89 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.86 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.86 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.85 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.84 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.83 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.83 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-77 Score=684.67 Aligned_cols=426 Identities=32% Similarity=0.607 Sum_probs=323.6
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..|...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|-...... ... ... . .+.
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~-------~~~-~~~----~-~~v 500 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP-------TQE-ECR----T-VYV 500 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCC-------CTT-TSC----E-EET
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-------ccc-cee----E-EEE
Confidence 468888999999999999999999999999999999999999999999841111000 000 000 0 000
Q ss_pred ccc----CCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 151 AQE----DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 151 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
.+. .......+.+.. .... . +.++.++|+.+||.....++++.+|||||||||+|||||+.+|+|||||||
T Consensus 501 ~q~~~~~~~~ltv~e~l~~--~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 501 EHDIDGTHSDTSVLDFVFE--SGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp TCCCCCCCTTSBHHHHHHT--TCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cccccccccCCcHHHHHHH--hhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 111 011222233321 1111 1 567889999999965567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHH
Q 007982 227 TNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQI 306 (582)
Q Consensus 227 t~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (582)
|||||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+++.+.|+++++.......
T Consensus 576 Ts~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~--------------- 640 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA--------------- 640 (986)
T ss_dssp TTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGG---------------
T ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHH---------------
Confidence 99999999999999998877899999999999999999999999999977789988765311000
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC------CCCCCeEEEEEEEEEecCC-
Q 007982 307 ASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG------KLPPPVLQFVEVTFGYTPD- 379 (582)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~~y~~~- 379 (582)
..+.. +..... .+.++.++ ....++|+++|++|+|++.
T Consensus 641 -------~~~~~------------------l~~~~~----------~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~ 685 (986)
T 2iw3_A 641 -------KAYEE------------------LSNTDL----------EFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS 685 (986)
T ss_dssp -------GGSSS------------------TTTCCC----------CCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCS
T ss_pred -------HHHHh------------------hhhhhh----------hccccccccccccccCCCceEEEEeeEEEeCCCC
Confidence 00000 000000 01111111 1235689999999999642
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc--CCcccHHHHHH---
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL--DMDMSALQYMI--- 454 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~--~~~~~~~~~~~--- 454 (582)
+++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++..+++|++|+....+ ....++.+++.
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~ 765 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999987778999988742110 00111111100
Q ss_pred --------------------------------------------------------------------------------
Q 007982 455 -------------------------------------------------------------------------------- 454 (582)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (582)
T Consensus 766 q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~ 845 (986)
T 2iw3_A 766 QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 845 (986)
T ss_dssp TTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEE
T ss_pred hccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhh
Confidence
Q ss_pred -----------------------hc-CCCChHHHHHHHHHhcCCCCcc-ccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 455 -----------------------KE-YPGNEEEKMRAAIGRFGLTGKA-QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 455 -----------------------~~-~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
.. +.....++++++|+.+||.... .++++.+|||||||||+|||+|+.+|+||||
T Consensus 846 ~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLL 925 (986)
T 2iw3_A 846 PRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925 (986)
T ss_dssp EGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 00 0111245678899999997543 3567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcC
Q 007982 510 DEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEG 565 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 565 (582)
||||+|||+.+...+.+.|+++++|||+||||++++..+||+||+|++|+++. .|
T Consensus 926 DEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~-~G 980 (986)
T 2iw3_A 926 DEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP-SG 980 (986)
T ss_dssp ECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eC
Confidence 99999999999999999999999999999999999999999999999999863 44
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-76 Score=647.66 Aligned_cols=442 Identities=19% Similarity=0.265 Sum_probs=316.1
Q ss_pred eEE-eeeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeee-----echHHHHH-HHH
Q 007982 73 IRI-ESLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI-----SCDEERLK-LEK 144 (582)
Q Consensus 73 i~v-~nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i-----~~~~~~~~-~~~ 144 (582)
.++ +||+|+|+++ .+++++| +|++||+++|+||||||||||+|+|+|+.+|+.|...... .+.+.... ...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 344 6999999886 4899999 9999999999999999999999999999988766421000 01111110 000
Q ss_pred HHH----HhccccCCCc--ch--HHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 145 EAE----ILGAQEDGGG--EQ--LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 145 ~~~----~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
... .+........ .. ...+.+.+.. .....++.++|+.+||.. ..++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~---~~~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK---ADETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH---HCSSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh---hhHHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence 000 0111000000 00 0011111110 111245788999999975 5789999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE--EEcCChhHHHHhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLK--FYTGNFDQYVQTRSEL 291 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~--~~~g~~~~~~~~~~~~ 291 (582)
+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++... .+...+.. +..
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~----~~~- 250 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGT----RNG- 250 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH----HHH-
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhH----HHH-
Confidence 99999999999999999999999998765 789999999999999999999999864321 12222211 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC--CCCCCeEEE
Q 007982 292 EENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG--KLPPPVLQF 369 (582)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 369 (582)
+..+...... . ... . .......+.++... ....+++++
T Consensus 251 -----------------~~~~~~~~~~--~------------------~~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (538)
T 1yqt_A 251 -----------------INEFLRGYLK--D------------------ENV--R-FRPYEIKFTKTGERVEIERETLVTY 290 (538)
T ss_dssp -----------------HHHHHHTEET--T------------------TTE--E-CSSSCCCCCCSSGGGSSCCCEEEEE
T ss_pred -----------------HHHHhhhccc--h------------------hhh--c-ccccccccccCCcccccCCCeEEEE
Confidence 0000000000 0 000 0 00000001111111 123578999
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccH
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSA 449 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~ 449 (582)
+|+++.|++ ..|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.. ...++|++|+... .+..++
T Consensus 291 ~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~--~~~~tv 364 (538)
T 1yqt_A 291 PRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKA--DYEGTV 364 (538)
T ss_dssp CCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCC--CCSSBH
T ss_pred eeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcC--CCCCcH
Confidence 999999953 4789999999999999999999999999999999999999999976 3469999998642 345566
Q ss_pred HHHHHhc-CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007982 450 LQYMIKE-YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527 (582)
Q Consensus 450 ~~~~~~~-~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 527 (582)
.+++... .. ....+.++++++.+|+.+.. .+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 6654321 00 01245678899999997544 567799999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhcCEEEEEeC--CeEEEEcCCHHHHHH
Q 007982 528 LNEW----DGGLVLVSHDFRLINQVAHEIWVCEN--QAVTRWEGDIMDFKL 572 (582)
Q Consensus 528 l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 572 (582)
|+++ +.|||+||||++++..+||||++|++ |++. ..|+++++..
T Consensus 444 l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence 8764 68999999999999999999999986 6665 4788877665
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-76 Score=655.16 Aligned_cols=444 Identities=18% Similarity=0.264 Sum_probs=321.1
Q ss_pred ceEE--------eeeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeee-----echH
Q 007982 72 DIRI--------ESLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI-----SCDE 137 (582)
Q Consensus 72 ~i~v--------~nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i-----~~~~ 137 (582)
.|++ +||+++|+++ .+|+++| +|++||+++|+||||||||||+|+|+|+.+|+.|...... .+.+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 9999999876 4999999 9999999999999999999999999999988766521000 0111
Q ss_pred HHHH-H-HHHHH-H--hccccCCC--cch--HHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHH
Q 007982 138 ERLK-L-EKEAE-I--LGAQEDGG--GEQ--LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 138 ~~~~-~-~~~~~-~--~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 208 (582)
.... . ..... . +....... ... ...+.+.+... ....++.++|+.+||.+ ..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELEN-VLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHH
Confidence 1110 0 00000 0 11100000 000 00122222111 11245788999999975 57899999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE--EEcCChhH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLK--FYTGNFDQ 283 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~--~~~g~~~~ 283 (582)
+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++... .+...+..
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~ 317 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 317 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhH
Confidence 9999999999999999999999999999999998766 789999999999999999999999865321 11111110
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC--C
Q 007982 284 YVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG--K 361 (582)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 361 (582)
+.. +..+...+... . .+ .. ......+.+.... .
T Consensus 318 ----~~~------------------i~~~~~~~~~~-~--------------~~---~~-----~~~~~~~~~~~~~~~~ 352 (607)
T 3bk7_A 318 ----RNG------------------INEFLQGYLKD-E--------------NV---RF-----RPYEIRFTKLSERVDV 352 (607)
T ss_dssp ----HHH------------------HHHHHHTEETT-T--------------TE---EC-----CSSCCCCCCSTTSCCC
T ss_pred ----HHH------------------HHHHHhhcchh-h--------------hh---hc-----cccccccccCCCcccc
Confidence 000 00011100000 0 00 00 0000011111111 1
Q ss_pred CCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhh
Q 007982 362 LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441 (582)
Q Consensus 362 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~ 441 (582)
...++++++|+++.|++ ..|+++||+|.+||++||+||||||||||+|+|+|+++|++|+|.. ...++|++|+...
T Consensus 353 ~~~~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 353 ERETLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKA 428 (607)
T ss_dssp CCCEEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCC
T ss_pred cCceEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccC
Confidence 23568999999999963 4789999999999999999999999999999999999999999976 3469999998642
Q ss_pred hcCCcccHHHHHHhc-CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 007982 442 KLDMDMSALQYMIKE-YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE 519 (582)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~ 519 (582)
.+..|+.+++... ... ...+.+.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 429 --~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 429 --EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp --CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred --CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 3456776655331 000 1235678899999998654 4677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeC--CeEEEEcCCHHHHHHH
Q 007982 520 TIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCEN--QAVTRWEGDIMDFKLH 573 (582)
Q Consensus 520 ~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 573 (582)
++..+.++|+++ +.|||+||||++++..+||||++|++ |++. ..|+++++...
T Consensus 506 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~~ 564 (607)
T 3bk7_A 506 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHhh
Confidence 999999998764 67999999999999999999999986 6664 47888877653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-72 Score=624.10 Aligned_cols=441 Identities=17% Similarity=0.234 Sum_probs=308.6
Q ss_pred eeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeech-------HHHH-HHHH-HH
Q 007982 77 SLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCD-------EERL-KLEK-EA 146 (582)
Q Consensus 77 nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~-------~~~~-~~~~-~~ 146 (582)
|++++|+.. ..+.+++ .+++|+++||+||||||||||||+|+|+..|+.|.+.....+. +... .... ..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 457888754 4666666 6899999999999999999999999999998876542111110 0000 0000 00
Q ss_pred -HHhcc-ccCCCcchHH--------HHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 147 -EILGA-QEDGGGEQLE--------RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 147 -~~~~~-~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
..+.. .......... .+...+.. .......++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH-HCCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh-hhhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHh
Confidence 00000 0000000000 11111110 01112357889999999975 5789999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEE--cCChhHHHHhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFY--TGNFDQYVQTRSEL 291 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~--~g~~~~~~~~~~~~ 291 (582)
+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+. ..+... +..
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~----~~~- 313 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV----REG- 313 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH----HHH-
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhH----HHH-
Confidence 99999999999999999999999998776 67999999999999999999999987654211 111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEE
Q 007982 292 EENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVE 371 (582)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (582)
...++..... .... .. ......+.... ......+...+
T Consensus 314 -----------------~~~~~~~~~~--------------------~~~~--~~-~~~~~~~~~~~--~~~~~~~~~~~ 351 (608)
T 3j16_B 314 -----------------INIFLDGHIP--------------------AENL--RF-RTEALQFRIAD--ATEDLQNDSAS 351 (608)
T ss_dssp -----------------HHHHHHTEET--------------------TTTE--EC-SSSCCCCCCSS--SSCCCCCCSSS
T ss_pred -----------------HHHhhccccc--------------------hhhh--cc-ccccccccccc--cccceeeeccc
Confidence 0000000000 0000 00 00000011100 00111222356
Q ss_pred EEEEecCCceeeEeeeEEEecC-----CEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 372 VTFGYTPDNLIYKNLDFGVDLD-----SRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 372 l~~~y~~~~~~l~~vsl~i~~G-----e~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
++++|++...+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|.... .+.
T Consensus 352 ~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~--~~~ 427 (608)
T 3j16_B 352 RAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAP--KFP 427 (608)
T ss_dssp SCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCC--CCC
T ss_pred eeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEecccccc--cCC
Confidence 7788865456889999999999 88999999999999999999999999999842 23468999997532 334
Q ss_pred ccHHHHHHhcCC--CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 447 MSALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 447 ~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
.++.+++..... ......+.++++.+++.+.. ++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 506 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHH
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence 567666543222 12345678899999998755 456799999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeC--CeEEEEcCCHHHHHHH
Q 007982 525 AEALNEW----DGGLVLVSHDFRLINQVAHEIWVCEN--QAVTRWEGDIMDFKLH 573 (582)
Q Consensus 525 ~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 573 (582)
.++|+++ +.|||+||||++++..+||||++|++ |++. ..|+++++...
T Consensus 507 ~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 507 SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 8888764 68999999999999999999999986 7875 58888887765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-71 Score=608.57 Aligned_cols=431 Identities=17% Similarity=0.245 Sum_probs=299.6
Q ss_pred eeeEEEECCeeeeEeeeEEEe-CCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH-------HH-HHHHHH
Q 007982 76 ESLSVTFHGHDLIVDSELELN-YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE-------RL-KLEKEA 146 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~-~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~-------~~-~~~~~~ 146 (582)
++.+.+|+.. -|+-..|.+. +||++|||||||||||||+|+|+|+..|+.|.+.....+... .. ......
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 3567888643 2444455544 899999999999999999999999998876654211111110 00 000000
Q ss_pred H--Hh--c--cccCCCcchH--HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 E--IL--G--AQEDGGGEQL--ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~--~~--~--~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
. .. . .+........ ..+.+.+.. .....++.++++.+|+.. ..++++.+|||||||||+|||||+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK---IDERGKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH---HCCSSCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhc---chhHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 0 00 0 0000000000 001111110 111235778999999964 578999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE--EcCChhHHHHhHHHHHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKF--YTGNFDQYVQTRSELEEN 294 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~~~~~~~ 294 (582)
+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+ +...+.. +..
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~----~~~---- 229 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA----RVG---- 229 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH----HHH----
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhhhH----HHH----
Confidence 999999999999999999999999876 6899999999999999999999998754321 1111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEE
Q 007982 295 QMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTF 374 (582)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 374 (582)
+..++..+... .. +.............. ..........++++++++++
T Consensus 230 --------------~~~~~~g~~~~-~~--------------~~~r~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~ 277 (538)
T 3ozx_A 230 --------------INNFLKGYLPA-EN--------------MKIRPDEIKFMLKEV---SDLDLSKDLKTKMKWTKIIK 277 (538)
T ss_dssp --------------HHHHHHTEETT-TT--------------EECSSSCCCCSCC-------------CCEEEEECCEEE
T ss_pred --------------HHHHHhhhchh-hh--------------hhccchhhhcccccc---ccccccccccceEEEcceEE
Confidence 00111110000 00 000000000000000 00000012356899999999
Q ss_pred EecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHH
Q 007982 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454 (582)
Q Consensus 375 ~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 454 (582)
.|++ ..|.++||+|.+||++||+||||||||||+++|+|+++|++|+|...+ ..++|++|.... .+..++.+++.
T Consensus 278 ~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~~--~~~~tv~~~l~ 352 (538)
T 3ozx_A 278 KLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIFP--NYDGTVQQYLE 352 (538)
T ss_dssp EETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCCC--CCSSBHHHHHH
T ss_pred EECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhccc--ccCCCHHHHHH
Confidence 9963 568888999999999999999999999999999999999999998754 468999987532 34567777664
Q ss_pred hcCC---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 455 KEYP---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 455 ~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
.... ......+.++++.+|+.... ++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 353 NASKDALSTSSWFFEEVTKRLNLHRLL-ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp HHCSSTTCTTSHHHHHTTTTTTGGGCT-TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HhhhhccchhHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 3211 12234578899999998654 4667999999999999999999999999999999999999999999988764
Q ss_pred ----CceEEEEecCHHHHHhhcCEEEEEeC
Q 007982 532 ----DGGLVLVSHDFRLINQVAHEIWVCEN 557 (582)
Q Consensus 532 ----~~tvi~vsHd~~~~~~~~d~i~~l~~ 557 (582)
+.|||+||||++++..+||||++|++
T Consensus 432 ~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 432 TRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 67999999999999999999999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-69 Score=646.17 Aligned_cols=203 Identities=27% Similarity=0.337 Sum_probs=169.3
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
..|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999742 36999999999999999999999999999999999999999999998763 35
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCC--CChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAra 499 (582)
++|++|++. .+..|+.+++....+ ....+++.++++..++.+..... ...+|||||||||+||||
T Consensus 1109 i~~v~Q~~~---l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPI---LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCC---CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCc---cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 899999863 346789998864322 22445566666666654332222 235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+.+|+||||||||++||+.+...+.+.|++. +.|||+||||++++. .||||++|++|+|++ .|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999875 569999999999985 599999999999975 789888754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-66 Score=624.96 Aligned_cols=202 Identities=28% Similarity=0.364 Sum_probs=174.4
Q ss_pred eEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 366 VLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
-|+++||+|+|++. .++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|..++. .++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 59999999999743 46999999999999999999999999999999999999999999998763 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC--CCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY--PGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral 500 (582)
++++|++. -++-|+.+++.... +..+.+++.++++..++.++....| ..+||||||||++|||||
T Consensus 1156 ~~V~Qdp~---LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT---LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE---eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999863 35679999976432 2345678889998888754332222 357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+++|+||||||||++||+++...+.+.|++. ++|+|+|+|.+..+ ..||+|+||++|+|++ .|+++++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV-MNADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEEEESSSSEEE-EECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999886 67999999999998 4699999999999987 799998875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-67 Score=592.08 Aligned_cols=426 Identities=22% Similarity=0.274 Sum_probs=268.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHH---------------------HHHhcCCCCCCCceee---eeechHHH
Q 007982 84 GHDLIVDSELELNYGRRYGLLGLNGCGKSTLL---------------------TAIGEIEASDMSSLEA---VISCDEER 139 (582)
Q Consensus 84 ~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl---------------------~~l~~~~~~~~~~~~~---~i~~~~~~ 139 (582)
...+|+||||+|++||++||+||||||||||+ ++++++..++.+.+.+ .+.++...
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 7778877776443211 11111110
Q ss_pred HHH--HHHHHHh--------------c--cccC-----CCcchHHHHHH--HHH--cCChhHHH------HHHHHHHHhC
Q 007982 140 LKL--EKEAEIL--------------G--AQED-----GGGEQLERVYE--RLE--ALDASTAE------KRAAEILYGL 186 (582)
Q Consensus 140 ~~~--~~~~~~~--------------~--~~~~-----~~~~~~~~~~~--~l~--~~~~~~~~------~~~~~~l~~l 186 (582)
... ......+ . .+.. ......+++.. .+. .......+ ....++|+.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 000 0000000 0 0000 00011111100 000 00000000 1122468899
Q ss_pred CCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHh
Q 007982 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNG 261 (582)
Q Consensus 187 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~ 261 (582)
||.+...++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++.+|+++|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 997544688999999999999999999999998 99999999999999999999998765 689999999999876
Q ss_pred hcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007982 262 VCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLA 335 (582)
Q Consensus 262 ~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (582)
.||+|++| ++|+++ +.|+++++........ .
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~~~~---------------------~--------------------- 305 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNSLT---------------------G--------------------- 305 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEE-EEECHHHHHTCTTCHH---------------------H---------------------
T ss_pred hCCEEEEecccccccCCEEE-EecCHHHHhcCchhHH---------------------H---------------------
Confidence 59999999 889986 4677766542110000 0
Q ss_pred HHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh-
Q 007982 336 KMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT- 414 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~- 414 (582)
........... .. .........+.+.+.. ..+|+||||+|++||++||+||||||||||+++|.
T Consensus 306 ~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~------~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~ 370 (670)
T 3ux8_A 306 QYLSGKKFIPI-PA--------ERRRPDGRWLEVVGAR------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLY 370 (670)
T ss_dssp HHHTTSSCCCC-CS--------SCCCCCSCEEEEEEEC------STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHH
T ss_pred HHhcccccccc-cc--------ccccccccceeecCcc------ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHH
Confidence 00000000000 00 0001112344444432 35799999999999999999999999999998753
Q ss_pred ---------------------CCCCCCCcEEEEcCcee-----------E------------------------------
Q 007982 415 ---------------------GDLVPLDGMVRRHNHLR-----------I------------------------------ 432 (582)
Q Consensus 415 ---------------------Gl~~p~~G~i~~~~~~~-----------~------------------------------ 432 (582)
|+..+ .|.|...+... .
T Consensus 371 ~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (670)
T 3ux8_A 371 KALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNV 449 (670)
T ss_dssp HHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTS
T ss_pred HHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccC
Confidence 22222 23333221100 0
Q ss_pred -----------EEechhhh---h---------------------------hcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 433 -----------AQFHQHLA---E---------------------------KLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 433 -----------~~~~q~~~---~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
+++.+.+. . ......++.+++..........+..+.+..
T Consensus 450 ~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~ 529 (670)
T 3ux8_A 450 KGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYD 529 (670)
T ss_dssp TTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00000000 0 000023444444322111223456778889
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHH
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLI 545 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~ 545 (582)
+|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.+...+.++|+++ +.|||+||||++++
T Consensus 530 ~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~ 609 (670)
T 3ux8_A 530 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI 609 (670)
T ss_dssp TTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred cCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9997544456778999999999999999998875 99999999999999999999988765 67999999999988
Q ss_pred HhhcCEEEEE------eCCeEEEEcCCHHHHH
Q 007982 546 NQVAHEIWVC------ENQAVTRWEGDIMDFK 571 (582)
Q Consensus 546 ~~~~d~i~~l------~~G~i~~~~g~~~~~~ 571 (582)
..||||++| ++|+|+ ++|+++++.
T Consensus 610 -~~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 610 -KTADYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp -TTCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred -HhCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 569999999 899997 589988874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-52 Score=475.04 Aligned_cols=334 Identities=23% Similarity=0.311 Sum_probs=237.5
Q ss_pred HHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEE
Q 007982 178 RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVI 252 (582)
Q Consensus 178 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviiv 252 (582)
+..+.|..+||.....++++.+|||||+|||+|||||+.+|+ +|||||||+|||+..+.+|+++|+++ +.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345678899997544688999999999999999999999887 99999999999999999999999876 5799999
Q ss_pred ecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q 007982 253 SHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQ 326 (582)
Q Consensus 253 sHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (582)
|||++++.. ||+|++| ++|+++ +.|+++++....... ...
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~~~~~~-------------------------------~~~- 568 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLKNPDSS-------------------------------LTG- 568 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHHSCTTC-------------------------------HHH-
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEE-EeechhhhhcCchhc-------------------------------chh-
Confidence 999999875 9999999 889886 678888765321100 000
Q ss_pred HHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcH
Q 007982 327 AQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGK 406 (582)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGK 406 (582)
..+.... ... .+.....+...+++++++ ...|+||||+|+.|++++|+|||||||
T Consensus 569 --------~~l~~~~-~~~----------~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGK 623 (916)
T 3pih_A 569 --------EYLSGKR-KIT----------VNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGK 623 (916)
T ss_dssp --------HHHHSSS-CCC----------CCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSH
T ss_pred --------hhhhccc-ccc----------cccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCCh
Confidence 0000000 000 000111223456666653 236899999999999999999999999
Q ss_pred HHHH---------HHHhCCCCCCCcEEEEcCc-----------eeE----------------------------------
Q 007982 407 STLL---------KLMTGDLVPLDGMVRRHNH-----------LRI---------------------------------- 432 (582)
Q Consensus 407 STLl---------~ll~Gl~~p~~G~i~~~~~-----------~~~---------------------------------- 432 (582)
|||+ +++.|...+..+.....+. ..+
T Consensus 624 STLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~ 703 (916)
T 3pih_A 624 SSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYN 703 (916)
T ss_dssp HHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCC
T ss_pred hhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccc
Confidence 9997 4555544333221111110 000
Q ss_pred -------------------EEechhhhh-------------------hc-----------CCcccHHHHHHhcCCCChHH
Q 007982 433 -------------------AQFHQHLAE-------------------KL-----------DMDMSALQYMIKEYPGNEEE 463 (582)
Q Consensus 433 -------------------~~~~q~~~~-------------------~~-----------~~~~~~~~~~~~~~~~~~~~ 463 (582)
|++.+.... .+ ...+++.+.+..........
T Consensus 704 ~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~ 783 (916)
T 3pih_A 704 KSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIK 783 (916)
T ss_dssp GGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHH
T ss_pred cccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHH
Confidence 000000000 00 00122222222111112235
Q ss_pred HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE
Q 007982 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP---HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVL 537 (582)
Q Consensus 464 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~ 537 (582)
++.++|+.+||......+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|.+.|+++ +.|||+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 67789999999765555778999999999999999999875 799999999999999999999998765 679999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 538 VSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 538 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
||||++++. .||+|++| ++|+|+ +.|+++++.+
T Consensus 864 I~HdL~~i~-~ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 864 IEHNLDVIK-NADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EeCCHHHHH-hCCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999985 59999999 899997 5899998864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=470.69 Aligned_cols=334 Identities=21% Similarity=0.246 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhh---cCcE
Q 007982 174 TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKK---FDRI 248 (582)
Q Consensus 174 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~t 248 (582)
++..++. .|..+||.....++++.+|||||+|||+||++|+.+| .+|||||||++||+..+.+|.++|++ .+.|
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T 433 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 3455665 6889999743368999999999999999999999999 49999999999999999999997755 4789
Q ss_pred EEEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 007982 249 LVVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAK 322 (582)
Q Consensus 249 viivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (582)
||+||||++++. .||+|++| ++|+++ +.|+++++........ ..+
T Consensus 434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~~~~~~~-----------------~~~---------- 484 (842)
T 2vf7_A 434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKHVPESQT-----------------GQY---------- 484 (842)
T ss_dssp EEEECCCHHHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGGCTTCHH-----------------HHH----------
T ss_pred EEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHhchHHHH-----------------HHH----------
Confidence 999999999875 79999999 688886 6789887753211000 000
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCC
Q 007982 323 LARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPN 402 (582)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~N 402 (582)
+....... . + ....+.++|+++++++. .|+||||+|+.|+++||+|+|
T Consensus 485 --------------l~~~~~~~---~-~--------~~~~~~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~n 532 (842)
T 2vf7_A 485 --------------LFADRHTE---P-H--------TPREPAGWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVS 532 (842)
T ss_dssp --------------HHTCCCCC---C-C--------CCCCCSCEEEEEEEEET------TEEEEEEEEESSSEEEEECCT
T ss_pred --------------hhhccccc---c-c--------ccCCCCceEEEEeeeec------ccccceEEEcCCCEEEEEcCC
Confidence 00000000 0 0 01123568999999851 599999999999999999999
Q ss_pred CCcHHHHHHH-HhCCC-------CCCCcEEE------------EcC---c-eeEEEechhhh------------------
Q 007982 403 GAGKSTLLKL-MTGDL-------VPLDGMVR------------RHN---H-LRIAQFHQHLA------------------ 440 (582)
Q Consensus 403 GsGKSTLl~l-l~Gl~-------~p~~G~i~------------~~~---~-~~~~~~~q~~~------------------ 440 (582)
|||||||++. |+|++ .|+.|.+. ..+ . ....++.|...
T Consensus 533 GSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~i 612 (842)
T 2vf7_A 533 GSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQV 612 (842)
T ss_dssp TSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHH
Confidence 9999999996 66543 34334331 001 0 00111111100
Q ss_pred ---------------------hh--------------------cC------------------------Ccc--------
Q 007982 441 ---------------------EK--------------------LD------------------------MDM-------- 447 (582)
Q Consensus 441 ---------------------~~--------------------~~------------------------~~~-------- 447 (582)
.+ +. ...
T Consensus 613 r~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~l 692 (842)
T 2vf7_A 613 RKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLAL 692 (842)
T ss_dssp HHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTC
T ss_pred HHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhc
Confidence 00 00 001
Q ss_pred cHHHHHHhcCCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHH
Q 007982 448 SALQYMIKEYPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ---PHMLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 448 ~~~~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~---p~lLlLDEPt~~LD~~~~~~ 523 (582)
++.+.+. .+.. ...+++.++|+.+||......+++.+|||||||||+||++|+.+ |+||||||||+|||+.++..
T Consensus 693 tv~e~l~-~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 693 TVDEAHD-FFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp BHHHHHH-HTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred cHHHHHH-HhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 1222211 1111 12346788999999986444567789999999999999999996 79999999999999999999
Q ss_pred HHHHHHhc---CceEEEEecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 524 LAEALNEW---DGGLVLVSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 524 l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
|.++|+++ +.|||+||||++++ .+||+|++| ++|+|+ ++|+++++..
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~~ 827 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVAQ 827 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHHh
Confidence 99888764 67999999999999 789999999 689996 5899888753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=469.76 Aligned_cols=335 Identities=20% Similarity=0.264 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
+..++ ++|..+||.....++++.+|||||+|||+||++|..+| ++|||||||++||+....+|.+.|+++ +.||
T Consensus 481 i~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 559 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 559 (972)
T ss_dssp HHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 34454 46889999643368999999999999999999999985 999999999999999999999887654 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKL 323 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (582)
|+||||++++. .||+|++| ++|+++ +.|+++++.......
T Consensus 560 IvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~~~~~sl-------------------------------- 605 (972)
T 2r6f_A 560 IVVEHDEDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNSL-------------------------------- 605 (972)
T ss_dssp EEECCCHHHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTTTCTTCT--------------------------------
T ss_pred EEEecCHHHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHHhhhHHH--------------------------------
Confidence 99999999986 69999999 688886 678888765311000
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCC
Q 007982 324 ARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNG 403 (582)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NG 403 (582)
.. ..+.+..... .... ......+.|++++++. ..|+||||+|+.|+++||+|+||
T Consensus 606 t~---------~~l~g~~~~~-~~~~---------~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nG 660 (972)
T 2r6f_A 606 TG---------QYLSGKKFIP-IPAE---------RRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSG 660 (972)
T ss_dssp TH---------HHHHTSSCCC-CCSS---------CCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTT
T ss_pred HH---------HHhcCCcccc-Cccc---------cccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCC
Confidence 00 0011100000 0000 0011236899999862 26999999999999999999999
Q ss_pred CcHHHHHHHHh-CCC-------CCCCcE-------------EEEcCce------------------------------eE
Q 007982 404 AGKSTLLKLMT-GDL-------VPLDGM-------------VRRHNHL------------------------------RI 432 (582)
Q Consensus 404 sGKSTLl~ll~-Gl~-------~p~~G~-------------i~~~~~~------------------------------~~ 432 (582)
||||||+++|+ |.+ .+..|. |...+.. ..
T Consensus 661 SGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~ 740 (972)
T 2r6f_A 661 SGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVR 740 (972)
T ss_dssp SSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHh
Confidence 99999999853 221 123342 2221110 01
Q ss_pred EEechhhhhhcC----------------------------------------------------CcccHHHHHHhcCCC-
Q 007982 433 AQFHQHLAEKLD----------------------------------------------------MDMSALQYMIKEYPG- 459 (582)
Q Consensus 433 ~~~~q~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~- 459 (582)
+|.+|.+..... ..+++.+.+.. +..
T Consensus 741 Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~-~~~~ 819 (972)
T 2r6f_A 741 GYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDF-FASI 819 (972)
T ss_dssp TCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHH-TCSC
T ss_pred cccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHH-Hhcc
Confidence 222221110000 01223333221 111
Q ss_pred ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---Cc
Q 007982 460 NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP---HMLLLDEPTNHLDIETIDSLAEALNEW---DG 533 (582)
Q Consensus 460 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 533 (582)
....++.++|+.+||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.+.|+++ +.
T Consensus 820 ~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 899 (972)
T 2r6f_A 820 PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 122345788999999863445677899999999999999999865 999999999999999999999988764 67
Q ss_pred eEEEEecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 534 GLVLVSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 534 tvi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
|||+||||++++ .+||+|++| ++|+|+ +.|+++++..
T Consensus 900 TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~ 942 (972)
T 2r6f_A 900 TVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVAE 942 (972)
T ss_dssp EEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEE-EEESHHHHHT
T ss_pred EEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE-EecCHHHHHh
Confidence 999999999998 589999999 689996 5888887753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=377.35 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=176.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------e
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~ 430 (582)
.++|+++||+++|++...+|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 468999999999975556999999999999999999999999999999999999999999987653 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc---CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE---YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|++...+ +..|+.+++... .... ..+++.++++.+||.... ++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-cCCcccCCHHHHHHHHHHHHHHcCC
Confidence 4899999864333 357888876532 1111 245688999999997655 4567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++ ++|+++++..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 999999999999999999999888654 579999999999999999999999999997 5899988754
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=384.22 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=176.9
Q ss_pred CCCeEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------
Q 007982 363 PPPVLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------- 429 (582)
..++|+++||+++|+++ ..+|+||||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45789999999999642 46899999999999999999999999999999999999999999987652
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
..++|++|++. +....|+.+++... . +. ...+++.++|+.+||.+... +++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHH
Confidence 25899999863 55667888877532 1 11 12456889999999987654 5568999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||||++|++|+++ ..|++.++..
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~~ 253 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVFS 253 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHHS
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999999988764 679999999999999999999999999997 5899888753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=366.98 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=168.7
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++||+++|+++ ..+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47999999999642 36999999999999999999999999999999999999999999998652
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--CC---C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--YP---G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
..++|++|++. +....|+.+++... .. . . ..+++.++++.+|+.+...++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 14899999863 45567888876431 11 1 1 23567889999999865435667899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+ .+||+|++|++|+++. +++..++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~~~ 233 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRGFD 233 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC---
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhhhc
Confidence 999999999999999999999999999988764 67999999999965 7999999999999974 66665543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=366.57 Aligned_cols=205 Identities=24% Similarity=0.330 Sum_probs=177.5
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
+.++|+++|+++.|+ ++++|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 8 ~~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 8 PVALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred CcceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 346899999999996 478999999999999999999999999999999999999999999998653 23
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC---C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc-----
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY---P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----- 502 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~----- 502 (582)
++|++|... +.+..|+.+++.... . ....+++.++++.+|+.+... +++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 87 RAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp EEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-SBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred EEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcccccC
Confidence 789998753 345678888875421 1 234567889999999987654 5668999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 -QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 -~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+++ ++|+++++..
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~~ 237 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVLN 237 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHCC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhC
Confidence 99999999999999999999999998765 359999999999999999999999999997 5899988753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-45 Score=377.74 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=175.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------ee
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~ 431 (582)
++|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. ..
T Consensus 3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 3699999999996 478999999999999999999999999999999999999999999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCC-----CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYP-----GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|++. +.+.+|+.+++..... .. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+
T Consensus 82 ig~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 82 LGYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CEEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999863 5667899998865321 11 2457889999999987655 5568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~ 228 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR 228 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence 999999999999999988876554 34789999999999999999999999999997 5899988765
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=367.34 Aligned_cols=204 Identities=22% Similarity=0.362 Sum_probs=173.2
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
.++|+++|++++|+ +.++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 4 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 4 ENKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred CceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 35799999999996 467999999999999999999999999999999999999999999987652
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHh---cCCC-C---hHHHHHHHHHhcCCCCc-cccCCCCCCChhHH
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIK---EYPG-N---EEEKMRAAIGRFGLTGK-AQVMPMKNLSDGQR 491 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~l~~~gl~~~-~~~~~~~~LSgGqk 491 (582)
..++|++|... +....|+.+++.. .... . ..+++.++++.+||.+. .. +++.+||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~ 159 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQ 159 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHH
T ss_pred cChhhHHHHhcceEEEecCcc--cCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCHHHH
Confidence 13789998742 4456688877643 1111 1 23568889999999865 44 56689999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHH
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 568 (582)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+++
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~ 238 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPE 238 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHH
Confidence 9999999999999999999999999999999999988765 679999999999999999999999999997 478887
Q ss_pred HHHH
Q 007982 569 DFKL 572 (582)
Q Consensus 569 ~~~~ 572 (582)
++..
T Consensus 239 ~~~~ 242 (262)
T 1b0u_A 239 QVFG 242 (262)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-45 Score=364.82 Aligned_cols=203 Identities=22% Similarity=0.308 Sum_probs=174.1
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------ee
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~ 431 (582)
++|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999996 467999999999999999999999999999999999999999999987652 13
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc---CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE---YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
++|++|... +....|+.+++... +.. . ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHCCC
Confidence 899999853 44556887776431 111 1 2356788999999976554 567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLFD 248 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999998765 679999999999999999999999999997 4788888754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=358.42 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=174.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 4 ~~~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 468999999999964 67999999999999999999999999999999999999999999987652 13
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC----CCC-hHHHHHHHHHhcC-CCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY----PGN-EEEKMRAAIGRFG-LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~l~~~g-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|... +....|+.+++.... ... ..+.+.++++.++ +.... ++++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHh-cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999753 445568888875421 111 2356778899994 86654 45678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++.++..
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 228 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHHT
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhc
Confidence 99999999999999999999998765 579999999999999999999999999996 5788887753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=364.23 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=173.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 46899999999996 467999999999999999999999999999999999999999999987652 14
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc--C---C------------CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE--Y---P------------GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~--~---~------------~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 492 (582)
++|++|+.. +....|+.+++... . . .. ..+++.++++.+|+.+.. ++++.+|||||||
T Consensus 84 i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHH
T ss_pred EEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-CCCchhCCHHHHH
Confidence 899999853 34456888877532 1 1 11 235678899999997654 4567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999999999999999999999998765 679999999999999999999999999997 4788877
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=356.16 Aligned_cols=196 Identities=23% Similarity=0.305 Sum_probs=167.1
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------- 429 (582)
++|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 47999999999964 67999999999999999999999999999999999999999999987642
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhc---CCC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKE---YPG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
..++|++|.+. +....|+.+++... ... ...+++.++++.+|+.+... +++.+|||||||||+|||||+.+
T Consensus 82 ~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence 24899999753 44556787776431 111 12356788999999987654 56689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++ .+||+|++|++|+++ ++|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~-~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV-GEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEee
Confidence 9999999999999999999999988765 67999999999998 899999999999996 3553
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=367.25 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=175.1
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------e
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~ 430 (582)
.++|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 19 ~~~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CceEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 468999999999964 67999999999999999999999999999999999999999999988652 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcC---------CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEY---------PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
.++|++|.....+....|+.+++.... ... ..+++.++++.+||.+.. ++++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHH
Confidence 489999986433333458888875321 111 235678899999997654 456789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGL--VLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+.+|+||||||||+|||+.++..+.+.|+++ +.|| |+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999998765 5789 99999999999999999999999996 578888764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=377.21 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=176.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 468999999999999999999999999999999999999999999987653 3599999
Q ss_pred hhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|++. +.+.+|+.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+|||||
T Consensus 82 Q~~~--l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTCC--CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 56678898887532 1 111 2457889999999987655 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++ ..|+++++..
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~~ 223 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 999999999999988887654 689999999999999999999999999997 5889888754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=359.80 Aligned_cols=204 Identities=22% Similarity=0.329 Sum_probs=174.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIA 433 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~ 433 (582)
.++|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++
T Consensus 13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 46899999999996 468999999999999999999999999999999999999999999988653 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhc---CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE---YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|... +....|+.+++... +... ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+||
T Consensus 92 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853 34456887776431 1111 1346788999999986554 567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 235 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE 235 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence 999999999999999999998765 579999999999999999999999999996 5788887754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=372.95 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=177.4
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEE
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIA 433 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~ 433 (582)
+.++|+++|++++|+++..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. ..++
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 4578999999999932457999999999999999999999999999999999999999999988652 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|+.. +.+.+|+.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+||
T Consensus 91 ~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 91 LVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863 55667888887532 1 111 2456889999999987654 556899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 235 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVYE 235 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999888664 679999999999999999999999999996 5789888764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=356.68 Aligned_cols=200 Identities=25% Similarity=0.377 Sum_probs=171.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
++|+++|++++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|... ..++|++|... +.
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~--~~ 78 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFS--SP 78 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCC--CS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCc--cC
Confidence 379999999999624679999999999999999999999999999999999999999999843 35899999853 33
Q ss_pred CcccHHHHHHhcC---------CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 445 MDMSALQYMIKEY---------PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 445 ~~~~~~~~~~~~~---------~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
...|+.+++.... ... ..+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4568888775321 111 235688999999998655 45678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 515 HLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+ + +.|+++++.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998765 6799999999999999999999999999 5 578887764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=358.16 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=174.9
Q ss_pred eEEEEEEEEEec-CC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEE
Q 007982 366 VLQFVEVTFGYT-PD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~-~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~ 433 (582)
+|+++|++++|+ ++ +++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999996 23 57999999999999999999999999999999999999999999998763 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcC----CC-ChHHHHHHHHHhcCCC--CccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY----PG-NEEEKMRAAIGRFGLT--GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~gl~--~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|++|++... .+..|+.+++.... +. ...+++.++++.+|+. +... +++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGG-CCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhh-cCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999985322 24578888875421 11 2346788999999998 6554 56689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|++.++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 227 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLE 227 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999998765 579999999999999999999999999996 5788877754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=353.71 Aligned_cols=199 Identities=28% Similarity=0.356 Sum_probs=170.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|++ +|+|+||+|++ ++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ml~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 4789999999953 59999999999 999999999999999999999999999999988652 2478888
Q ss_pred hhhhhhcCCcccHHHHHHhcCC--C--ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP--G--NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
|... +....|+.+++..... . ...+++.++++.+|+.+... +++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8753 4455688888754321 1 12456889999999986554 56689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 216 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFS 216 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999998764 679999999999999999999999999997 5788887754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=369.08 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=175.9
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999996 467999999999999999999999999999999999999999999988652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCC--CCh----HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP--GNE----EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +.+.+|+.+++..... ... .+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNYA--LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSCC--CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 4567789998864321 111 346889999999987654 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 223 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVYD 223 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999888664 679999999999999999999999999996 5789988765
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=355.64 Aligned_cols=209 Identities=24% Similarity=0.346 Sum_probs=167.5
Q ss_pred ceEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER-----LKLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~-----~~~~~~ 145 (582)
+|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|+.|. +.+++.. ......
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~----I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR----ILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCCSHHHHHHH
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE----EEECCEECCcccccHHHH
Confidence 7999999999975 56999999999999999999999999999999999999887554 3333221 111122
Q ss_pred HHHhcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 AEILGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 ~~~~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+++ |.+ ....+.+++..... ..+..+..+++.++|+.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 233332 221 12244555543332 2455666788999999999964 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ +.|+++++..
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999988654 679999999999999999999999999997 4678777653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=369.97 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=175.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 589999999996 467999999999999999999999999999999999999999999987652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +.+.+|+.+++... .+.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 45667888887532 1111 2356889999999987655 456899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~~ 223 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVYY 223 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999888764 679999999999999999999999999997 4788888764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=362.41 Aligned_cols=203 Identities=24% Similarity=0.338 Sum_probs=172.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
..|+++||+|+|+++.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 46999999999976678999999999999999999999999999999999999999999998763 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|.+. + +..|+.+++.........+++.++++.+++...... .+..+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~--l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTV--L-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCC--C-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCc--c-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 9999863 2 356999988754333344556667766666433222 23468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||+.+...|.+.|.++ +.|||+||||++.+.. ||+|++|++|+|+. .|+++++..
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 6799999999999976 99999999999974 899888764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=352.79 Aligned_cols=208 Identities=26% Similarity=0.367 Sum_probs=165.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 146 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... ......
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I----~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI----IIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE----EECCEECCCccccHHHHh
Confidence 7999999999999999999999999999999999999999999999999998875543 2222111 011112
Q ss_pred HHhcc--ccCC---CcchHHHHHHHH-H--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QEDG---GGEQLERVYERL-E--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~~---~~~~~~~~~~~l-~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ |... .....+++.... . .......++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 23332 2221 123444443321 1 2334455678899999999964 568999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 247 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLF 247 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999998765 6799999999999999999999999999974 57776654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=369.57 Aligned_cols=202 Identities=21% Similarity=0.268 Sum_probs=172.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 599999999996 467999999999999999999999999999999999999999999988652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCC--C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP--G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +.+.+|+.+++..... . . ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 90 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 90 QSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9864 4567799998864321 1 1 1356889999999987654 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 231 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYL 231 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999888764 679999999999999999999999999997 4789888764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=368.28 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=174.9
Q ss_pred eEEEEEEEEEecCCce--eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 366 VLQFVEVTFGYTPDNL--IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~--~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
+|+++|++++|++ .. +|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+.
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 5899999999964 56 999999999999999999999999999999999999999999986542
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhcCC--C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKEYP--G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
..++|++|+.. +.+.+|+.+++..... . . ..+++.++++.+||.+... +++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhC
Confidence 24899999853 5566789988764321 1 1 2356889999999987654 55689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 230 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD 230 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999999999888764 679999999999999999999999999997 4788888754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=351.27 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=169.3
Q ss_pred eEEEEEEEEEec-CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYT-PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-++++||+|+|+ +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 489999999994 3467999999999999999999999999999999999999999999988652 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|.+. +. ..|+.+++....+....+++.++++.+++...... .++.+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 87 VVLQDNV--LL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EECSSCC--CT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCc--cc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999853 22 35888887543222334567778888877543322 24579999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~~ 232 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELLS 232 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHHT
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999998876 679999999999986 59999999999997 4788877643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=368.01 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=173.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
||+++|++++|++ . +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|...+. ..++|++
T Consensus 1 ml~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 4789999999964 5 999999999999999999999999999999999999999999998763 2489999
Q ss_pred hhhhhhcCCcccHHHHHHhcC----CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEY----PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
|+.. +.+.+|+.+++.... .... +++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||||
T Consensus 79 Q~~~--l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 79 QNYS--LFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred cCcc--cCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9853 455678888765321 1122 67899999999987655 45689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 217 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIFE 217 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999888764 679999999999999999999999999997 4788888753
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=365.16 Aligned_cols=209 Identities=26% Similarity=0.426 Sum_probs=168.3
Q ss_pred cceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 71 RDIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.+|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+.+|+.|.+ .+++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I----~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV----LVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE----EETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE----EECCEECCcCCHH
Confidence 47999999999963 479999999999999999999999999999999999999885543 3322111
Q ss_pred HHHHHHHHhcc--ccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
........+++ |... ..++.+++...+. ..+..+.++++.++|+.+||.+ ..++++.+|||||||||+||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHH
Confidence 11111223332 2221 2344555544332 3456677788999999999975 5789999999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+++ ..|+.++++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~ 252 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 252 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999999998764 689999999999999999999999999997 567777655
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=352.23 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=165.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------------
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------------ 139 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------------ 139 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI----IVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE----EECCEEcccccccccccc
Confidence 6999999999999999999999999999999999999999999999999999875543 222111
Q ss_pred ----HHHHHHHHHhcc--ccCC---CcchHHHHHHHH-H--cCChhHHHHHHHHHHHhCCCChhh-hhccCCCCChhHHH
Q 007982 140 ----LKLEKEAEILGA--QEDG---GGEQLERVYERL-E--ALDASTAEKRAAEILYGLGFNKTM-QAKKTRDFSGGWRM 206 (582)
Q Consensus 140 ----~~~~~~~~~~~~--~~~~---~~~~~~~~~~~l-~--~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGqrq 206 (582)
.........+++ |... ..++.+++.... . ..+....+.++.++++.+|+.+ . .++++.+|||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHH
Confidence 011111223332 2221 123444543321 1 2334455678899999999975 4 68899999999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999998765 6799999999999999999999999999974 577766
Q ss_pred HH
Q 007982 284 YV 285 (582)
Q Consensus 284 ~~ 285 (582)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=368.84 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=174.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------e
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------L 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~ 430 (582)
+|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999995 467999999999999999999999999999999999999999999987542 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|+.. +.+.+|+.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence 4899999853 45667888887532 1 111 2356889999999987654 556899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 229 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD 229 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHh
Confidence 999999999999999999998888664 679999999999999999999999999996 5789888764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=353.56 Aligned_cols=198 Identities=19% Similarity=0.332 Sum_probs=172.1
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEE-
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIA- 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~- 433 (582)
+|+++|++++|++. +.+|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+.+. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 47899999999641 579999999999 9999999999999999999999999 99999988762 2588
Q ss_pred EechhhhhhcCCcccHHHHHHhc--CCCChHHHHHHHHHhcCCC-CccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE--YPGNEEEKMRAAIGRFGLT-GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|++|.+. + ..|+.+++... ......+++.++++.+|+. +.. ++++.+|||||||||+|||||+.+|++||||
T Consensus 79 ~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 79 NLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-RRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp CCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGG-GSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999864 2 56787776432 1123456789999999998 654 4567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcC-EEEEEeCCeEEEEcCCHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAH-EIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||++||+.++..+.+.|+++..|||+||||++++..+|| ++++|++|+++ ..|+++++.
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~ 214 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELL 214 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHH
Confidence 9999999999999999999886699999999999999999 99999999996 578888775
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=353.73 Aligned_cols=208 Identities=21% Similarity=0.237 Sum_probs=164.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+|+.|.+ .+++... ........
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I----~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC----HLLGQNLNSWQPKALART 86 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE----EETTEETTTSCHHHHHHH
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE----EECCEECCcCCHHHHhhe
Confidence 7999999999999999999999999999999999999999999999999999886643 2222111 11111222
Q ss_pred hcc--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc------C
Q 007982 149 LGA--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI------N 217 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------~ 217 (582)
+++ |... .....+++............++++.++++.+|+.+ ..++++.+|||||||||+|||||+. +
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 332 2211 12333333222112233445678899999999975 5688999999999999999999999 9
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~-~g~~~~~~ 236 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA-CGTPEEVL 236 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999998765 3599999999999999999999999999974 57766543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=350.48 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=170.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
+|+++|++|+|+++.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999953467999999999999999999999999999999999999999999987652 24789
Q ss_pred echhhhhhcCCcccHHHHHHhc-CCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE-YPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|.+. + +..|+.+++... ......+++.++++.+++.+.... .++.+|||||||||+|||||+.+
T Consensus 81 v~q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 VSQDSA--I-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp ECCSSC--C-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCc--c-ccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 998753 2 235888887543 222345567888999888765432 23579999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999888765 679999999999985 69999999999996 5899888754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=340.69 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=158.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~ 145 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... .....
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV----FLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE----EETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEECCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999998875543 2222110 01111
Q ss_pred -HHHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 -AEILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 -~~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+++ |... .....+++.... ........++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 123332 2221 123444443222 22333445678899999999975 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999998765 67999999999998 8999999999999974
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=341.30 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=159.7
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------HH
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------LK 141 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------~~ 141 (582)
+|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++.. ..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I----~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV----YIDNIKTNDLDDDE 76 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE----EECCEEcccCCHHH
Confidence 4899999999973 469999999999999999999999999999999999999885543 322211 01
Q ss_pred HHH-HHHHhcc--ccCC---CcchHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 142 LEK-EAEILGA--QEDG---GGEQLERVYERLE-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~-~~~~~~~--~~~~---~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
... ....+++ |.+. ..+..+++...+. ........+++.++++.+|+.+...++++.+|||||||||+|
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 111 1122332 2221 1244455543322 223455667889999999997654588999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++.+ .+||+|++|++|+++. .++.++
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~ 231 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRG 231 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC-
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhh
Confidence 99999999999999999999999999999998764 68999999999965 7999999999999974 344443
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=352.88 Aligned_cols=205 Identities=21% Similarity=0.301 Sum_probs=167.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEcCc------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNH------------ 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl--~~p~~G~i~~~~~------------ 429 (582)
.++|+++||+++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|+ ++|++|+|.+.+.
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 46899999999995 46899999999999999999999999999999999999 4789999988653
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHh---------cCCC-C---hHHHHHHHHHhcCCCCccccCCCC-CCChhHHHHHH
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIK---------EYPG-N---EEEKMRAAIGRFGLTGKAQVMPMK-NLSDGQRSRVV 495 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~---------~~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~ 495 (582)
..++|++|.+. +....++.+++.. .... . ..+++.++++.+|+.....++++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 12788888753 2334555554421 1111 1 134678899999996433345555 59999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 253 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLVK 253 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999999999999999999999999876 46999999999999886 9999999999997 578887765
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
.
T Consensus 254 ~ 254 (267)
T 2zu0_C 254 Q 254 (267)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=367.42 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=164.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 146 (582)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+.+|+.|.+ .+++... ......
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I----~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI----SLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE----EETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE----EECCEECcccccccchhh
Confidence 6999999999999999999999999999999999999999999999999999885543 2222111 000001
Q ss_pred HHhc--cccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 EILG--AQEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~~~~--~~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
..++ +|... ..++.+++...+. ..+..+.++++.++|+.+||.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1222 22221 1234444433222 2344566788999999999974 6789999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHh----hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+..+..+.+.|. +.+.|+|+||||++++..+||||++|++|+++. .|+++++.
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHH
Confidence 999999999999999998887553 447899999999999999999999999999974 57776654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-43 Score=365.54 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=167.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+|+|++..+|+|+||+|++||+++|+||||||||||||+|+|+.+|+.|. +.+++.... .......++
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~----I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD----LFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE----EEECCEECCCCCHHHCCEE
Confidence 599999999999999999999999999999999999999999999999999988554 333322110 000001122
Q ss_pred --cccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|... ..++.+++...+ ...+..+.++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22221 234455554433 24566677889999999999974 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++. .|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~ 222 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 9999999999999999888654 7899999999999999999999999999974 57766544
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=349.18 Aligned_cols=206 Identities=20% Similarity=0.235 Sum_probs=161.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 147 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... .......
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV----YFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHHHHHH
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE----EECCEECCCCCHHHHHhC
Confidence 7999999999999999999999999999999999999999999999999999875543 3322111 0111112
Q ss_pred HhccccCCC-----cchHHHHHHHHHc---------------CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 148 ILGAQEDGG-----GEQLERVYERLEA---------------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 148 ~~~~~~~~~-----~~~~~~~~~~l~~---------------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
.+++.++.. ....+++...... ......+.++.++++.+|+.+ ..++++.+||||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL 161 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHHH
Confidence 233222211 1233333221111 122344567899999999964 5789999999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
|+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 99999999999999999999999999999999998765 6899999999999999999999999999974 466665
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=345.26 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=164.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 149 (582)
+|+++||+++|+++.+|+++||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... ........+
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I----~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV----TVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEETTTCHHHHHTTE
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEECCccHHHHhhcE
Confidence 7999999999999999999999999999999999999999999999999998875543 3322111 011112223
Q ss_pred cc--ccCC---CcchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 GA--QEDG---GGEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
++ |... ..+..+++.. .+........++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 169 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAI 169 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 32 2211 1233444422 2223344444567899999999974 5688999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 234 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 234 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999998765 6799999999999999999999999999974 56666543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=348.58 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=161.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEcCce------------e
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNHL------------R 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl--~~p~~G~i~~~~~~------------~ 431 (582)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+|+|+|+ ++|++|+|.+.+.. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 689999999996 46799999999999999999999999999999999999 78999999886531 2
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc------C-CC--ChHHHHHHHHHhcCCCCccccCCCCC-CChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE------Y-PG--NEEEKMRAAIGRFGLTGKAQVMPMKN-LSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~------~-~~--~~~~~~~~~l~~~gl~~~~~~~~~~~-LSgGqkqrv~lAral~ 501 (582)
++|++|.+. +....++.+++... . .. ...+++.++++.+|+.....++++.+ |||||||||+|||||+
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 567777643 33445676665321 1 11 11346788999999953333456688 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~ 569 (582)
.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 230 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPEL 230 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999999999999999876 46999999999999888 5999999999997 4788763
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=348.90 Aligned_cols=203 Identities=26% Similarity=0.349 Sum_probs=168.4
Q ss_pred CCeEEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e
Q 007982 364 PPVLQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~ 430 (582)
..+|+++||+++|++ ...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 357999999999964 257999999999999999999999999999999999999999999988652 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcCCC-Ch-H--------HHHHHHHHhc--CCCCccccCCCCCCChhHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPG-NE-E--------EKMRAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~-~--------~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
.++|++|.+. +. ..|+.+++...... .. . ..+.++++.+ |+..... +++.+|||||||||+|||
T Consensus 94 ~i~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 94 QVAAVGQEPL--LF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HEEEECSSCC--CC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCc--cc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcCCCCHHHHHHHHHHH
Confidence 4899999863 22 35888887643211 11 1 1234566777 6765443 456899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999999876 469999999999986 49999999999997 4788887754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=338.21 Aligned_cols=200 Identities=23% Similarity=0.341 Sum_probs=164.0
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 443 (582)
.+|+++|++++|++ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|.+. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 47999999999963 46799999999999999999999999999999999999999999999987 5899999863 2
Q ss_pred CCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 444 DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. ..|+.+++...... ......++++.+++..... ..++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~-~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 81 M-PGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp C-SBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred c-CCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 2 34888888643221 1223444555555532211 1235799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 514 NHLDIETIDSLAEA-LNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 514 ~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++||+.++..+.+. +.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 159 s~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 218 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 218 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999997 4444 579999999999986 59999999999997 5788887754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=342.89 Aligned_cols=197 Identities=27% Similarity=0.350 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
++|+++|++++ .+|+|+||+|.+|++++|+||||||||||+|+|+|+++|+ |+|.+.+. ..++
T Consensus 3 ~~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 3 IVMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred cEEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 37899999985 4899999999999999999999999999999999999999 99998763 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC-------
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH------- 505 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~------- 505 (582)
|++|+.. +....|+.+++.... .....+++.++++.+|+.+... +++.+|||||||||+|||||+.+|+
T Consensus 77 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 77 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp EECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred EECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 9999853 345578888876421 1112567889999999986554 5678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 221 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 221 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999998765 579999999999999999999999999996 578888774
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=341.50 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=161.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~ 147 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... ..... ..
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI----IFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE----EECCEECCCCCHHHHHhC
Confidence 6999999999999999999999999999999999999999999999999998875543 3322111 01111 11
Q ss_pred Hhcc--ccCC---CcchHHHHHHHH-HcCChhHHHHHHHHHHHhCC-CChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 148 ILGA--QEDG---GGEQLERVYERL-EALDASTAEKRAAEILYGLG-FNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l-~~~~~~~~~~~~~~~l~~lg-l~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
.+++ |... ..+..+++.... .........+++.++++.++ +.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 1332 2211 123334432211 11223345667888999994 854 56889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999998765 6799999999999999999999999999974 56666543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=359.23 Aligned_cols=211 Identities=22% Similarity=0.314 Sum_probs=167.6
Q ss_pred CccceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHH
Q 007982 69 LSRDIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEA 146 (582)
Q Consensus 69 ~~~~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 146 (582)
++.+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+.+|+.|.+ .+++.... .....
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV----WIGGKRVTDLPPQK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTCCGGG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE----EECCEECCcCChhh
Confidence 45689999999999 88889999999999999999999999999999999999999885543 33221110 00001
Q ss_pred HHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 EILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
..++ +|.. +..+..+++...+. ..+..+.++++.++++.+||.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1122 1221 12344555544332 3455566788999999999974 6789999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999988654 7899999999999999999999999999974 57776554
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=352.08 Aligned_cols=208 Identities=21% Similarity=0.301 Sum_probs=160.7
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~ 145 (582)
.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... .....
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I----~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV----NLFGKMPGKVGYSAETV 95 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTBCCC---CCHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE----EECCEEcccccCCHHHH
Confidence 37999999999999999999999999999999999999999999999999998875543 3222111 01111
Q ss_pred HHHhcc--cc-----CCCcchHHHHHHHH------HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 146 AEILGA--QE-----DGGGEQLERVYERL------EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 146 ~~~~~~--~~-----~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
...+++ |. .......+++.... .........+++.++++.+|+.+ ..++++.+|||||||||+|||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHH
Confidence 112221 11 11113334432110 01112334567889999999964 568999999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEE--EEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRIL--VVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--iivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||+.+|++|||||||++||+.++..+.++|+++ +.|| |+||||++++..+||+|++|++|+++. .|+++++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 250 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVEDI 250 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHHH
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999999999999998765 6799 999999999999999999999999974 5666544
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=342.51 Aligned_cols=202 Identities=22% Similarity=0.304 Sum_probs=168.1
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
++|+++|++|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.+.+. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 579999999999643 4699999999999999999999999999999999999987 899988652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcc----------ccCCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKA----------QVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~ 501 (582)
++|++|.+. + +..|+.+++.........+++.++++.+++.+.. ...++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTI--L-FNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCC--C-CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--c-cccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 899999863 2 2458888876432222345667778877764321 12345799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|++.++..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998876 579999999999985 59999999999997 4788887754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=338.97 Aligned_cols=199 Identities=21% Similarity=0.285 Sum_probs=162.2
Q ss_pred eEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 366 VLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 366 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
+|+++|++++|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|.+. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999963 35799999999999999999999999999999999999999999999987 4899999853 2
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHh------cCCCCc----cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGR------FGLTGK----AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gl~~~----~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
+..|+.+++....... .+...++++. +++.+. ...+++.+|||||||||+|||||+.+|++|||||||+
T Consensus 78 ~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 78 QNDSLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CSEEHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 4678888876432111 1122233333 332211 1234568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---hc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 515 HLDIETIDSLAEALN---EW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~---~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||+.++..+.+.|. .+ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhh
Confidence 999999999999984 32 579999999999985 79999999999997 4788887754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=357.50 Aligned_cols=208 Identities=26% Similarity=0.352 Sum_probs=166.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI----YFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTSCGGGTTEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE----EECCEECCcCCHhHCcEE
Confidence 5999999999998899999999999999999999999999999999999999885543 33221110 000011232
Q ss_pred --cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|.. +.....+++...+. ..+..+.++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2222 12244555544332 3445566778999999999975 57899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999988654 6899999999999999999999999999974 57776654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=338.32 Aligned_cols=190 Identities=19% Similarity=0.315 Sum_probs=161.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEech
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQ 437 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q 437 (582)
..+|+++|++++|++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 8 ~~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 358999999999964 7999999999999999999999999999999999999999999998763 25899999
Q ss_pred hhhhhcCCcccHHHHHHhc---CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 438 HLAEKLDMDMSALQYMIKE---YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
.+. +....|+.+++... +. ....+++.++++.+|+... .+++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 853 34456887776431 11 2235678899999999876 5667899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 514 NHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
++||+.++..+.+.|+++ +.|||+||||++++..+||+|+++ .|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999998765 469999999999999999998854 4555
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=357.96 Aligned_cols=208 Identities=26% Similarity=0.359 Sum_probs=163.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI----YFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTSCGGGTTEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE----EECCEECCCCChhhCcEE
Confidence 5999999999999999999999999999999999999999999999999999885543 33221110 000011232
Q ss_pred --cccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|... ..+..+++...+. ..+..+.++++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22221 1233444432221 1122334568999999999974 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999988654 7899999999999999999999999999974 57776553
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=357.93 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=166.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-------HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-------LEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-------~~~ 144 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... ...
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI----YIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE----EECCEECccccccccCCH
Confidence 6999999999999999999999999999999999999999999999999999885543 22221100 000
Q ss_pred HHHHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 145 EAEILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 145 ~~~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
....++ +|.. +.....+++...+. ..+....++++.++++.+||.+ ..++++.+|||||||||+|||||+.+
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 011222 2222 12344555544332 3455566778999999999964 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 9999999999999999999999888654 7899999999999999999999999999974 57776654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=341.23 Aligned_cols=196 Identities=24% Similarity=0.306 Sum_probs=157.6
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
+|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. .. ..++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----~~----------~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----VY----------QSIG 69 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----EC----------SCEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----Ee----------ccEE
Confidence 699999999998 88999999999999999999999999999999999999998865442 00 0111
Q ss_pred --cccC---CCcchHHHHHHHHH---c---CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 151 --AQED---GGGEQLERVYERLE---A---LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~---~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
+|.. ......+++..... . ......++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1111 11233333322111 0 112334567899999999974 5688999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+ + +.|+++++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 99999999999999999999998765 6799999999999999999999999999 5 45666544
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=344.96 Aligned_cols=207 Identities=22% Similarity=0.300 Sum_probs=160.4
Q ss_pred ceEEeeeEEEEC--C---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHH
Q 007982 72 DIRIESLSVTFH--G---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~--~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 146 (582)
+|+++||+++|+ + +.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|. +.+++.........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~----I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD----VLYDGERKKGYEIR 77 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCHHHHG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE----EEECCEECchHHhh
Confidence 589999999997 5 68999999999999999999999999999999999999887554 33332211000111
Q ss_pred HHhccccCC------CcchHHHHHHHHHc-CChhHHHHHHHHHHHhCCCC--hhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 147 EILGAQEDG------GGEQLERVYERLEA-LDASTAEKRAAEILYGLGFN--KTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 147 ~~~~~~~~~------~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
..+++.++. .....+++...... ......++++.++++.+|+. + ..++++.+|||||||||+|||||+.+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS-FKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHH-HTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcc-cccCChhhCCHHHHHHHHHHHHHHcC
Confidence 223322111 12333343221111 22233356788999999997 5 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 225 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEF 225 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHH
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999998765 6799999999999999999999999999974 5665554
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=338.78 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=158.4
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+. +|+.| .+.+++... .....
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G----~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG----TVEFKGKDLLALSPEDR 94 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEE----EEEETTEEGGGSCHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCe----EEEECCEECCcCCHHHH
Confidence 4799999999999999999999999999999999999999999999999984 34433 333332211 01111
Q ss_pred -HHHhc--cccCC---CcchHHHHHH---HHH---c---CChhHHHHHHHHHHHhCCCChhhhhccCC-CCChhHHHHHH
Q 007982 146 -AEILG--AQEDG---GGEQLERVYE---RLE---A---LDASTAEKRAAEILYGLGFNKTMQAKKTR-DFSGGWRMRIA 209 (582)
Q Consensus 146 -~~~~~--~~~~~---~~~~~~~~~~---~l~---~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~-~LSGGqrqRv~ 209 (582)
...++ +|... .....+.+.. .+. . ........++.++++.+|+.....++++. +|||||||||+
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 11222 22221 1122333221 111 1 12334456789999999996445678887 59999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhh-cCeEEEEeCCeEEEEcCChhHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV-CTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+++++
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLV 252 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999999999999999999999999876 57999999999999886 99999999999974 5666543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=354.53 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=161.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++ +|+++||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~~~g~~i~~~~~~~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI----LLDGKDVTDLSPEKHDIA 75 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE----EETTEECTTSCHHHHTCE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE----EECCEECCCCchhhCcEE
Confidence 48899999999988 9999999999999999999999999999999999999885543 33222110 011112233
Q ss_pred c--ccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ |.. +..+..+++...+. ..+.. +++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLL 151 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLL 151 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 222 12244455543332 22222 67899999999975 57899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 152 DEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~~ 216 (348)
T 3d31_A 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIF 216 (348)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999988654 6899999999999999999999999999974 57766543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.37 Aligned_cols=205 Identities=25% Similarity=0.331 Sum_probs=156.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|++ +|+|+||+|++ ++++|+||||||||||+|+|+|+.+|+.|. +.+++.... .......++
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE----VRLNGADITPLPPERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCTTTSCCB
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE----EEECCEECCcCchhhCcEE
Confidence 4789999999986 49999999999 999999999999999999999999887554 333322110 000011122
Q ss_pred c--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 151 A--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+ |... .....+++............++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2 2211 11233333211111111223567899999999974 5688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 226 PTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 215 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999998764 6799999999999999999999999999974 57776654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=356.85 Aligned_cols=208 Identities=24% Similarity=0.340 Sum_probs=163.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI----YFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE----EECCEECCCCChhhCcEE
Confidence 5999999999999999999999999999999999999999999999999999885543 32221110 000011222
Q ss_pred c--ccC---CCcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QED---GGGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~---~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ |.. +..+..+++...+ ...+..+.++++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 211 1123333432211 12344556678999999999974 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999988654 6899999999999999999999999999974 57776654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=357.95 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=164.1
Q ss_pred ceEEeeeEEEECCee--eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH------HH
Q 007982 72 DIRIESLSVTFHGHD--LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK------LE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~--il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~------~~ 143 (582)
+|+++||+++|+++. +|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... ..
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL----YFDDRLVASNGKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE----EETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE----EECCEECcccccccCC
Confidence 699999999999887 9999999999999999999999999999999999999885543 22221100 00
Q ss_pred HHHHHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 144 KEAEILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 144 ~~~~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
.....++ +|.. +..+..+++...+. ..+....++++.++++.+||.+ ..++++.+|||||||||+|||||+.
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHh
Confidence 0011222 2221 11234444433222 2344556678999999999974 6789999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|++|||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999988654 6899999999999999999999999999974 57776654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=334.95 Aligned_cols=206 Identities=22% Similarity=0.264 Sum_probs=154.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC--CCCCCCceeeeeechHHHH---HHHHH-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI--EASDMSSLEAVISCDEERL---KLEKE- 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~--~~~~~~~~~~~i~~~~~~~---~~~~~- 145 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+ .+|+.| .+.+++... .....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G----~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG----EILLDGENILELSPDERA 78 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEE----EEEETTEECTTSCHHHHH
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCce----EEEECCEECCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999998 555533 333332211 01111
Q ss_pred HHHhc--cccCC---CcchHHHHHHHH---Hc--CChhHHHHHHHHHHHhCCCChhhhhccCCC-CChhHHHHHHHHHHH
Q 007982 146 AEILG--AQEDG---GGEQLERVYERL---EA--LDASTAEKRAAEILYGLGFNKTMQAKKTRD-FSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~--~~~~~---~~~~~~~~~~~l---~~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~-LSGGqrqRv~LAraL 214 (582)
...++ +|.+. .....+++.... .. ........++.++++.+|+.....++++.+ |||||||||+|||||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 11122 22221 123333332211 11 122344567889999999953456889999 999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhh-cCeEEEEeCCeEEEEcCChh
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV-CTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 282 (582)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 9999999999999999999999999999875 57999999999999988 59999999999974 46654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=335.22 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=153.5
Q ss_pred cceEEeeeEEEE--CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTF--HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y--~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++||+++| +++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... .....
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~----I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ----VLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEETTTSCHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE----EEECCEEhhhCCHHHH
Confidence 379999999999 4678999999999999999999999999999999999999887553 33332111 11111
Q ss_pred HHHhccccCCC-cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGAQEDGG-GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++.++.. ... ..+.+.+..........++.++++.+++.+.. .++++.+|||||||||+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 22343222111 111 13333332111111134566677777764321 2345689999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++. .|+++++.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~l~ 231 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE-QGKHKELL 231 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE-EECHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999876 689999999999986 499999999999974 57776654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-44 Score=392.43 Aligned_cols=390 Identities=14% Similarity=0.090 Sum_probs=237.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeE-EEeCCcEEEEECCCCCcHHHHHHH--HhcCCCCCCCceeeeeechHHHHHHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSEL-ELNYGRRYGLLGLNGCGKSTLLTA--IGEIEASDMSSLEAVISCDEERLKLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl-~i~~Ge~~~LvG~NGsGKSTLl~~--l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 148 (582)
.++.+++.+.+++.++|+++|| .|++|++++|+||||||||||+++ ++|+.+++.+.+. +...............
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~--v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF--VTFEETPQDIIKNARS 89 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE--EESSSCHHHHHHHHGG
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE--EEEeCCHHHHHHHHHH
Confidence 4555667766678899999999 999999999999999999999999 6788876544321 2111111111111112
Q ss_pred hccccCCCcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 149 LGAQEDGGGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
+++. +.+.... +..+.... .....++++.+++.. ..++.+..||||| |++|+||||
T Consensus 90 ~g~~-------~q~~~~~~~l~~~~~~~-~~~~~~~l~~~~l~~-~~~~~~~~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 90 FGWD-------LAKLVDEGKLFILDASP-DPEGQEVVGGFDLSA-LIERINYAIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp GTCC-------HHHHHHTTSEEEEECCC-CSSCCSCCSSHHHHH-HHHHHHHHHHHHT-------------CSEEEEECS
T ss_pred cCCC-------hHHhhccCcEEEEecCc-ccchhhhhcccCHHH-HHHHHHHHHHHcC-------------CCEEEECCH
Confidence 2111 1111000 00000000 000112233344432 3455666777764 779999999
Q ss_pred CCC-----CCHHHHHHHHHHHhhc---CcEEEEEecCHHHH---------HhhcCeEEEEeCCeEEEEcCChhHHHHhHH
Q 007982 227 TNH-----LDLEACVWLEETLKKF---DRILVVISHSQDFL---------NGVCTNIIHMQNKQLKFYTGNFDQYVQTRS 289 (582)
Q Consensus 227 t~~-----LD~~~~~~l~~~l~~~---~~tviivsHd~~~~---------~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 289 (582)
|+. ||+..+..|.++++.+ +.|||+|||+++++ ..+||+|++|++|++ .|....+...
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~~-- 222 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLEI-- 222 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEEE--
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc---CCceeEEEEE--
Confidence 984 6899998888887654 78999999999984 567999999998432 1211100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHcCCCCccc-ccCceeEEEeccCCCCCCCeE
Q 007982 290 ELEENQMKQYKWEQEQIASMKEYIARF-GHGSAKLARQAQSKEKTLAKMERGGLTEKV-VKDKVLVFRFVDVGKLPPPVL 367 (582)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 367 (582)
.++ +... ... ...+ ....-+. .++.......+.+
T Consensus 223 ------------------------~k~r~~~~------------------~~~-~~~~~i~~~gi~-v~p~~~~~~~~~~ 258 (525)
T 1tf7_A 223 ------------------------LKLRGTSH------------------MKG-EYPFTITDHGIN-IFPLGAMRLTQRS 258 (525)
T ss_dssp ------------------------EEETTSCC------------------CCS-EEEEEEETTEEE-ECCTTTCCSCCCC
T ss_pred ------------------------EECCCCCC------------------CCc-eEEEEEcCCCEE-EEecccccccccc
Confidence 000 0000 000 0000 0000000 0110011123456
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE-EEEcCceeEEEechhhhhhcCCc
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM-VRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~-i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
+++++++.|++-..+| +..|.+|++++|+||||||||||++.++|+..|. |. + +.+.+|.....
T Consensus 259 ~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v-------i~~~~ee~~~~---- 323 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA-------ILFAYEESRAQ---- 323 (525)
T ss_dssp CCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE-------EEEESSSCHHH----
T ss_pred ccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE-------EEEEEeCCHHH----
Confidence 7888887664201232 4489999999999999999999999999998875 53 2 22333332211
Q ss_pred ccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HH
Q 007982 447 MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE-----TI 521 (582)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~-----~~ 521 (582)
...... .+. .+. .+ +..+|+...... ++.+|||||+||+++|+++..+|++||+| ||++||.. .+
T Consensus 324 --l~~~~~-~~g-~~~---~~-~~~~g~~~~~~~-~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 324 --LLRNAY-SWG-MDF---EE-MERQNLLKIVCA-YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp --HHHHHH-TTS-CCH---HH-HHHTTSEEECCC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred --HHHHHH-HcC-CCH---HH-HHhCCCEEEEEe-ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 111111 111 111 12 224555443333 44799999999999999999999999999 99999998 88
Q ss_pred HHHHHHHH---hcCceEEEEecCH----------HHHHhhcCEEEEEeCCe
Q 007982 522 DSLAEALN---EWDGGLVLVSHDF----------RLINQVAHEIWVCENQA 559 (582)
Q Consensus 522 ~~l~~~l~---~~~~tvi~vsHd~----------~~~~~~~d~i~~l~~G~ 559 (582)
..+.++++ +.+.|||+||||. +++..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 77766654 4578999999999 88889999999998775
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=339.24 Aligned_cols=204 Identities=22% Similarity=0.268 Sum_probs=157.1
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHH
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 147 (582)
+|+++|++++|++ +.+|+++||+|+ |++++|+||||||||||+|+|+|+. |+.|. +.+++..........
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~----I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN----IFINGMEVRKIRNYI 74 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE----EEETTEEGGGCSCCT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE----EEECCEECcchHHhh
Confidence 4899999999987 789999999999 9999999999999999999999999 87443 333321110000011
Q ss_pred Hhc---cccCC-CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 148 ILG---AQEDG-GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 148 ~~~---~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
.++ +|... .....+++....... .....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||
T Consensus 75 ~i~~~v~Q~~~l~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 75 RYSTNLPEAYEIGVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp TEEECCGGGSCTTSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred heEEEeCCCCccCCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 122 12211 223333432221111 112456889999999972356889999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcC-eEEEEeCCeEEEEcCChhHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCT-NIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||++||+.++.++.+.|+++..|||+||||++++..+|| ++++|++|+++. .|+++++
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l 213 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSEL 213 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999886699999999999999999 999999999974 4665443
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=336.12 Aligned_cols=208 Identities=22% Similarity=0.311 Sum_probs=155.5
Q ss_pred cceEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHH
Q 007982 71 RDIRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEK 144 (582)
Q Consensus 71 ~~i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~ 144 (582)
.+|+++||+++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... ....
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~----I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK----VLLDGEPLVQYDHHY 90 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEEGGGBCHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE----EEECCEEcccCCHHH
Confidence 37999999999986 78999999999999999999999999999999999999887554 33322111 1111
Q ss_pred HHHHhcc--ccCCC--cchHHHHHHHHHcCCh-hHH-----HHHHHHHHHhC--CCChhhhhccCCCCChhHHHHHHHHH
Q 007982 145 EAEILGA--QEDGG--GEQLERVYERLEALDA-STA-----EKRAAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 145 ~~~~~~~--~~~~~--~~~~~~~~~~l~~~~~-~~~-----~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
....+++ |.... ....+++......... ... ...+.++++.+ |+.. ..++++.+|||||||||+|||
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHH
T ss_pred HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHH
Confidence 1223332 22211 1233333211111111 111 12345677777 6753 467889999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++|++|+++. .|+++++.
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999875 5699999999999875 99999999999974 57776654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=350.76 Aligned_cols=200 Identities=23% Similarity=0.339 Sum_probs=172.1
Q ss_pred CeEEEEEEEEEec-CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYT-PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++||+|+|+ ++..+|+|+||+|.+||+++|+||||||||||||+|+|+++ ++|+|.+.+. ..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 5699999999995 34679999999999999999999999999999999999998 8999998763 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCC-----------CChhHHHHHHHHHHHc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN-----------LSDGQRSRVVFAWLAY 501 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgGqkqrv~lAral~ 501 (582)
+|++|++. + +..|+.+++.. +.....+++.++++.++|.+...+.| .+ |||||||||+|||||+
T Consensus 97 g~v~Q~~~--l-f~~tv~enl~~-~~~~~~~~v~~~l~~~~L~~~~~~~p-~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 97 GVIPQKVF--I-FSGTFRKNLDP-NAAHSDQEIWKVADEVGLRSVIEQFP-GKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EEESCCCC--C-CSEEHHHHHCT-TCCSCHHHHHHHHHHTTCHHHHTTST-TGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEEcCCcc--c-CccCHHHHhhh-ccccCHHHHHHHHHHhCCHHHHhhcc-cccccccccccccCCHHHHHHHHHHHHHh
Confidence 99999864 2 34688888752 22334567889999999987665444 56 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+ ..||||++|++|+|. ..|++.++..
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEE-EESSHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999876 56999999998766 569999999999997 4799988765
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=338.16 Aligned_cols=206 Identities=20% Similarity=0.332 Sum_probs=152.6
Q ss_pred cceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 71 RDIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 71 ~~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
..|+++||+|+|+ ++.+|+|+||+|++|++++||||||||||||+++|+|+.+|+.|. +.+++..+ ......
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~----I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC----IRIDGQDISQVTQASLR 127 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEE----EEETTEETTSBCHHHHH
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcE----EEECCEEcccCCHHHHh
Confidence 3699999999995 578999999999999999999999999999999999999887543 33333211 112222
Q ss_pred HHhcc--ccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCCh----------hhhhccCCCCChhHHHHHHHHH
Q 007982 147 EILGA--QEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNK----------TMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 147 ~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~----------~~~~~~~~~LSGGqrqRv~LAr 212 (582)
..+++ |.+. ..+..+++........ ...+.++++.+++.+ ...++.+.+|||||||||+|||
T Consensus 128 ~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiAR 203 (306)
T 3nh6_A 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203 (306)
T ss_dssp HTEEEECSSCCCCSEEHHHHHHTTSTTCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred cceEEEecCCccCcccHHHHHHhhcccCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHH
Confidence 33432 2221 1223333321111111 123334444444321 2334566899999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||+.+|+||||||||++||+.+...|.+.|+++ ++|+|+||||++.+.. ||+|++|++|+|+ ..|+++++..
T Consensus 204 AL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~ 277 (306)
T 3nh6_A 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS 277 (306)
T ss_dssp HHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999999875 6799999999999987 9999999999997 4688877654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=326.61 Aligned_cols=199 Identities=21% Similarity=0.261 Sum_probs=154.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+ |.+. +++... ........
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~----~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ----FAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE----ETTEEGGGSCHHHHHHH
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE----ECCEECCcCCHHHHhce
Confidence 6999999987 6999999999999999999999999999999999999887 6542 222111 11112223
Q ss_pred hcc--ccCCC---cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC----
Q 007982 149 LGA--QEDGG---GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT---- 219 (582)
Q Consensus 149 ~~~--~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~---- 219 (582)
+++ |.... ....+++... ...... +.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~--~~~~~~-~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLH--QHDKTR-TELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTT--CSSTTC-HHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred EEEECCCCccCCCCcHHHHHHHh--hccCCc-HHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 332 22211 1233333211 111111 567889999999964 5688999999999999999999999999
Q ss_pred ---ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 220 ---ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 220 ---lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 220 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEV 220 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHH
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999998765 6799999999999999999999999999974 4665544
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=331.57 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=150.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 443 (582)
.++|+++|+++.+ +.+|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|... +
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l 110 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--I 110 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--C
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--c
Confidence 3569999999864 4689999999999999999999999999999999999999999999877 5899999853 2
Q ss_pred CCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 444 DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. ..|+.+++. .... ....+.++++.+++..... ..++.+|||||||||+|||||+.+|++|||||||
T Consensus 111 ~-~~tv~enl~-~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 111 M-PGTIKENII-GVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp C-SSBHHHHHH-TTCC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred C-cccHHHHhh-Cccc-chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 2 348888886 3221 2233445556666543221 1234799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 514 NHLDIETIDSLAEAL-NEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||+.++..+.+.+ .++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 188 s~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 247 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 247 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHhh
Confidence 999999999999964 443 579999999999985 69999999999996 5788888754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=333.01 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=152.0
Q ss_pred ceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH---HHHHHH
Q 007982 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK---LEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~ 147 (582)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++.... ......
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~ 76 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT----IDGQPIDNISLENWRS 76 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE----ETTEESTTTSCSCCTT
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE----ECCEEhhhCCHHHHHh
Confidence 48899999999 567899999999999999999999999999999999999988766542 2221110 000011
Q ss_pred Hhcc--ccCCCcchHHHHHHHHHcC-ChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHHH
Q 007982 148 ILGA--QEDGGGEQLERVYERLEAL-DASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 148 ~~~~--~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAraL 214 (582)
.+++ |..... . ..+.+.+... .......++.++++.+++.+.. .++++.+|||||||||+|||||
T Consensus 77 ~i~~v~q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 77 QIGFVSQDSAIM-A-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp TCCEECCSSCCC-C-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred hEEEEcCCCccc-c-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 1222 221111 1 1233333211 1111134567778888875422 1245689999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 225 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELV 225 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999988765 689999999999886 59999999999996 467776654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=358.90 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=173.4
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999743 67999999999999999999999999999999999999999999988662 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~ 501 (582)
+|++|++. + +..|+.+++.... +....+++.++++.+++.+..... +..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 420 ALVSQNVH--L-FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred EEEcCCCc--c-ccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 99999863 2 3458888886543 334566788888888876543322 34799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLA 567 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999876 579999999999986 699999999999974 899888754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=327.88 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=150.8
Q ss_pred ceEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 72 DIRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
+|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.++ .| .+.+++... .....
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G----~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG----DIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE----EEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce----EEEECCEEhhhcCHHHH
Confidence 6999999999976 4699999999999999999999999999999999999875 33 333332211 11111
Q ss_pred HHHhcc--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHH
Q 007982 146 AEILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAra 213 (582)
...+++ |.+... . ..+.+.+..........++.++++.+++.+.. .++++.+|||||||||+||||
T Consensus 92 ~~~i~~v~Q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 92 RSIIGIVPQDTILF-N-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp HTTEEEECSSCCCC-S-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred hccEEEEcCCCccc-c-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 222332 222111 1 12333332111011134566777777764321 235688999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++. .|+++++.
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 241 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLL 241 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999999999776 579999999999986 599999999999974 57776654
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=322.29 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=149.2
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..|+++||+++|++ .+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++.... .....++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~----I~~~g~~~~--~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE----IIYNGVPIT--KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEEGG--GGGGGEE
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE----EEECCEEhh--hhcCcEE
Confidence 37999999999998 9999999999999999999999999999999999999887543 333332211 0112232
Q ss_pred c--ccCC---CcchHHHHHHHHHcCC-hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 151 A--QEDG---GGEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+ |... .....+++........ ... +.++.++++.+|+.. . ++++.+|||||||||+|||||+.+|++||||
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2 2211 1233444432221111 122 567889999999975 4 8899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 225 EPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||+++.+ .|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999998765 579999999999999999998855 4444
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=359.23 Aligned_cols=203 Identities=26% Similarity=0.324 Sum_probs=173.7
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999743 67999999999999999999999999999999999999999999998762 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~ 501 (582)
+|++|++. + +..|+.+++.... +....+++.++++.+++.+.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 420 ALVSQNVH--L-FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEECSSCC--C-CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEccCCc--C-CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999863 2 3458999886543 33456678888988887644332 235799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||++||+.+...+.+.++++ +.|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 999999999999999999999999998875 679999999999985 699999999999974 799888754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=359.62 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=172.4
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
.-|+++|++|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45999999999975 357999999999999999999999999999999999999999999998763 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. + +..|+.+++....+....+++.++++..++.+..... +..+|||||||||+|||||+.
T Consensus 418 ~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNI--L-FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCC--C-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--c-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 99999853 2 3459999987654444556677777777764433222 235899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||++||+.+...+.+.++++ ++|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~-~g~~~el~~ 564 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIA 564 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999998775 579999999999985 599999999999974 899988765
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=362.05 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=173.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
.-|+++|++|+|+++.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999976667999999999999999999999999999999999999999999998763 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|++. + +..|+.+++....+....+++.++++.+++.+.....| ..+|||||||||+|||||+.+
T Consensus 433 ~v~Q~~~--l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 433 IVLQDTI--L-FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EECTTCC--C-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999863 2 35689998875433334456777888777755443333 258999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.+...+.+.+.++ +.|+|+||||++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999998875 6799999999999865 99999999999974 899988754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=321.30 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=143.6
Q ss_pred ceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHh
Q 007982 72 DIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (582)
+|+++||+++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~----I~~~g~----------i 68 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH----VAIKGS----------V 68 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE----EEECSC----------E
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce----EEECCE----------E
Confidence 699999999997 578999999999999999999999999999999999999887543 333220 1
Q ss_pred c--cccCC--CcchHHHHHHHHHcCChhHHHHHHHH---HHHhCCCCh----hhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 150 G--AQEDG--GGEQLERVYERLEALDASTAEKRAAE---ILYGLGFNK----TMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 150 ~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~---~l~~lgl~~----~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
+ +|.+. .....+++.... ...... ..++.+ +++.+++.+ ...++++.+|||||||||+|||||+.+|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGC-QLEEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTS-CCCTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcc-ccCHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 1 11111 122223321110 111111 111111 122222211 1236789999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHh---hc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLK---KF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~---~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.+.|. ++ +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 216 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELL 216 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHh
Confidence 9999999999999999999999984 32 679999999999975 79999999999997 457776654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.98 Aligned_cols=203 Identities=21% Similarity=0.279 Sum_probs=170.1
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 46999999999964 357999999999999999999999999999999999999999999998763 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcc----------ccCCCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKA----------QVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. + +..|+.+++....+....+++.++++..++.+.. ...+..+|||||||||+|||||+.
T Consensus 420 ~~v~Q~~~--l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETV--L-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCC--C-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCc--C-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 99999863 2 3568999886543333445555566555443211 123457999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999875 579999999999985 899999999999975 899988765
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=314.60 Aligned_cols=193 Identities=20% Similarity=0.340 Sum_probs=142.6
Q ss_pred ceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHh
Q 007982 72 DIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (582)
+|+++||+++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++. +
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~----------i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGR----------I 71 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EECSC----------E
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE----EECCE----------E
Confidence 799999999995 5789999999999999999999999999999999999998875543 22220 1
Q ss_pred c--cccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChh----------hhhccCCCCChhHHHHHHHHHHHh
Q 007982 150 G--AQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT----------MQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 150 ~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
+ +|... .....+++.. ..... ..+..++++.+++.+. ..++++.+|||||||||+|||||+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~---~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIF---GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHT---TSCCC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCHHHHhhc---cCCcC--hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 1 11111 1122222211 00100 1122333444444221 123356899999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHH-Hhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEET-LKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++..+.+. +.++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 217 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999997 4443 679999999999986 599999999999974 57776654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=341.28 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=157.3
Q ss_pred cceEEeeeEEEE--CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTF--HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y--~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
..|+++||+|+| +++.+|+|+||+|++||+++|+||||||||||||+|+|+.+ +. |.+.+++... .....
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~----G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE----GEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EE----EEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CC----eEEEECCEECCcCChHHH
Confidence 369999999999 66789999999999999999999999999999999999987 43 3343333211 11112
Q ss_pred HHHhcc--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCC-----------CChhHHHHHHHHH
Q 007982 146 AEILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRD-----------FSGGWRMRIALAR 212 (582)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~-----------LSGGqrqRv~LAr 212 (582)
...+++ |...... ..+.+.+... .....+++.++++.+++.+ ..++++.+ |||||||||+|||
T Consensus 93 rr~ig~v~Q~~~lf~--~tv~enl~~~-~~~~~~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS--GTFRKNLDPN-AAHSDQEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHTEEEESCCCCCCS--EEHHHHHCTT-CCSCHHHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred hCCEEEEcCCcccCc--cCHHHHhhhc-cccCHHHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 233332 2221111 1333333211 1223456888999999964 56888888 9999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++.+ ..||||++|++|+|+. .|+++++.
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE-ESSHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999875 57999999998766 4699999999999974 57776654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=335.79 Aligned_cols=210 Identities=19% Similarity=0.312 Sum_probs=156.6
Q ss_pred cceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|.+ .+++... .....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i----~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI----CLDGHDVRDYKLTNL 415 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE----EECCEEhhhCCHHHH
Confidence 46999999999974 689999999999999999999999999999999999999886643 2222211 11112
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCC-hhHHHHHHHHHHHhCCCChh----------hhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKT----------MQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++.++........+.+++.... ....++++.++++.+++.+. ..++++.+|||||||||+|||||
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred hcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 22233222211111123444443211 11224556777777776432 12334589999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++ ..|++++...
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 679999999999986 69999999999997 4688777653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=308.85 Aligned_cols=190 Identities=21% Similarity=0.347 Sum_probs=130.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG- 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 150 (582)
.|+++||++. ++.+|+++||+|++|++++|+||||||||||+|+|+|+.+|+.|. +.+++. ++
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~----I~~~g~----------i~~ 103 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK----IKHSGR----------ISF 103 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE----EECCSC----------EEE
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE----EEECCE----------EEE
Confidence 6999999986 368999999999999999999999999999999999999887443 333220 11
Q ss_pred -cccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHHHhcC
Q 007982 151 -AQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 151 -~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+|... .....+++. ..... ..++.++++.+++...+ .++++.+|||||||||+|||||+.+
T Consensus 104 v~Q~~~l~~~tv~enl~----~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 104 CSQNSWIMPGTIKENII----GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp ECSSCCCCSSBHHHHHH----TTCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EeCCCccCcccHHHHhh----Ccccc--hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 11111 112333332 11111 11233444445543211 2234589999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETL-KKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l-~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..+.+.+ .++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 246 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHh
Confidence 9999999999999999999999974 343 679999999999986 699999999999974 57776654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=335.60 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=152.3
Q ss_pred cceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH---HHHHHH
Q 007982 71 RDIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER---LKLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~---~~~~~~ 145 (582)
..|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|. +.+++.. ......
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~----i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR----VEVDELDVRTVKLKDL 415 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE----EEESSSBGGGBCHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE----EEECCEEcccCCHHHH
Confidence 4699999999995 467999999999999999999999999999999999999987553 3333221 112222
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhC-----------CCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGL-----------GFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l-----------gl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++.++........+.+++.........+.+.+.++.. |++ ...++++.+|||||||||+|||||
T Consensus 416 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHH
Confidence 33344322211100012333332111101112223333333 332 234677889999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++ ..|+++++..
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~-~~g~~~el~~ 566 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVA-GFGTHKELLE 566 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEE-EEECHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999875 679999999999986 89999999999997 4688887764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=336.59 Aligned_cols=207 Identities=23% Similarity=0.305 Sum_probs=155.4
Q ss_pred cceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|. +.+++... .....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~----i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH----ILMDGHDLREYTLASL 415 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE----EEETTEETTTBCHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe----EEECCEEccccCHHHH
Confidence 47999999999974 68999999999999999999999999999999999999887543 33333211 11122
Q ss_pred HHHhcc--ccCCCcchHHHHHHHHHcCC-hhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHH
Q 007982 146 AEILGA--QEDGGGEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAr 212 (582)
...+++ |.+... . ..+.+.+.... ....++++.++++.+++.+.. .++++.+|||||||||+|||
T Consensus 416 ~~~i~~v~Q~~~l~-~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 416 RNQVALVSQNVHLF-N-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp HHTEEEECSSCCCC-S-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HhhCeEEccCCcCC-C-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 233332 222111 1 12333332111 111235577788888775321 22346899999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++ ..|++++..
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELL 566 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHH
Confidence 999999999999999999999999999998775 689999999999886 69999999999997 457877664
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.17 Aligned_cols=209 Identities=20% Similarity=0.309 Sum_probs=153.5
Q ss_pred cceEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 71 RDIRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 71 ~~i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
..|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... ......
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~----i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ----ILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE----EEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE----EEECCEEhhhCCHHHHH
Confidence 36999999999974 67999999999999999999999999999999999999988553 33332211 122223
Q ss_pred HHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhc-----------cCCCCChhHHHHHHHHHHHh
Q 007982 147 EILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAK-----------KTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~~LSGGqrqRv~LAraL~ 215 (582)
..+++.++........+.+++........++.+.++++.+++.+ ..++ ...+|||||||||+|||||+
T Consensus 429 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 429 SSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 33432222111001123333321111111233555666666532 2233 33799999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998775 6899999999999875 9999999999997 5788887764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.94 Aligned_cols=210 Identities=22% Similarity=0.349 Sum_probs=152.7
Q ss_pred cceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|. +.+++... .....
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~----i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ----ILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE----EEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE----EEECCEEhhhCCHHHH
Confidence 36999999999964 57999999999999999999999999999999999999987543 33333211 12222
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChh----------hhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT----------MQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++.++........+.+++........++++.+.++..++.+. ..+..+.+|||||||||+|||||+
T Consensus 414 r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 414 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred hhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 3334322221110011233333211111112345555555554321 223455799999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|++|+++ ..|++++...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998765 5799999999999864 9999999999997 4688877654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=338.45 Aligned_cols=200 Identities=27% Similarity=0.464 Sum_probs=164.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC-CCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-DLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G-l~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
.|...|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+| .+ .|.- .....+++|++|.+. .+.
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~-~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFP-TQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCC-CTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCc-cccceeEEEEccccc-ccc
Confidence 466679999996 4689999999999999999999999999999999984 32 1210 011224567776531 233
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
...++.+++....... .++++++|+.+|+.....++++.+|||||||||+|||+|+.+|+||||||||+|||+.++..|
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 4567888775322122 567899999999964344567899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+.|++.+.|||+||||++++..+||+|++|++|+++.+.|++.++..
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999998778999999999999999999999999999777899999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=358.89 Aligned_cols=202 Identities=28% Similarity=0.368 Sum_probs=176.2
Q ss_pred eEEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 366 VLQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
-|+++||+|+|++ +.++|+|+||+|++|+.+|||||+|||||||+++|.|+++|++|+|..++. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 5999999999974 457999999999999999999999999999999999999999999998763 259
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. -++.|+.+++....+..+.+++.++++..++.++....| ...|||||||||+||||+++
T Consensus 495 ~~v~Q~~~---Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPA---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCcce---eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 99999863 467899999986655556778888888887654433222 35899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+||||||||++||+++...+.+.|.++ ++|+|+|||++..+ +.||+|+||++|+|++ .|+.+++.+
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive-~Gth~eL~~ 641 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI-RNADLIISCKNGQVVE-VGDHRALMA 641 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT-TTCSEEEEEETTEEEE-EECHHHHHT
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH-HhCCEEEEeeCCeeec-cCCHHHHHH
Confidence 99999999999999999999999999876 68999999999988 5799999999999985 899888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=357.63 Aligned_cols=203 Identities=26% Similarity=0.330 Sum_probs=169.4
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
.-|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|..++. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999742 46999999999999999999999999999999999999999999998763 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~ 501 (582)
+++++|++. + +..|+.+++....+....+++.++++..++.+... .....+|||||||||+|||||+
T Consensus 466 i~~v~Q~~~--l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPV--L-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCC--C-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCc--c-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 899999863 2 34589998876544344555666666555432211 1234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+++...+.+.++.. ++|+|+|||+++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999988764 6899999999999965 9999999999997 4899988754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.07 Aligned_cols=189 Identities=22% Similarity=0.321 Sum_probs=152.4
Q ss_pred CeEEE--------EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE---------Ec
Q 007982 365 PVLQF--------VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RH 427 (582)
Q Consensus 365 ~~l~~--------~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~---------~~ 427 (582)
.+|++ +|++++|++...+++++| +|.+||++||+||||||||||+|+|+|+++|++|++. ..
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred ceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 46888 899999965335899999 9999999999999999999999999999999999851 11
Q ss_pred C-------------ceeEEEechhhhhhcC-CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 428 N-------------HLRIAQFHQHLAEKLD-MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 428 ~-------------~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
+ ...+++.+|.+..... ...++.+++... ...+++.++|+.+||.... ++++.+||||||||
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~~~-~~~~~~LSGGekQR 236 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELENVL-DRELHQLSGGELQR 236 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTTGG-GSBGGGCCHHHHHH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCchh-CCChhhCCHHHHHH
Confidence 1 1234555665322111 112566655321 1123578899999998755 46779999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCC
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G 558 (582)
|+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||+|++|+++
T Consensus 237 vaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998876 789999999999999999999999865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=329.04 Aligned_cols=187 Identities=24% Similarity=0.322 Sum_probs=147.3
Q ss_pred EEE-EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE---------EcC--------
Q 007982 367 LQF-VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RHN-------- 428 (582)
Q Consensus 367 l~~-~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~---------~~~-------- 428 (582)
.++ +|++++|++...+++++| +|.+||++||+||||||||||+|+|+|+++|++|++. ..+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 599999965335899999 9999999999999999999999999999999999851 111
Q ss_pred -----ceeEEEechhhhhhcC-CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 429 -----HLRIAQFHQHLAEKLD-MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 429 -----~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
...+++.+|.+..... ...++.+++.... ..+++.++|+.+|+.... ++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~~~-~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELENVL-EREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTTTT-TSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCChhh-hCChhhCCHHHHHHHHHHHHHhc
Confidence 1234566665321110 1124555443211 123578899999998654 56779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCC
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G 558 (582)
+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999988765 789999999999999999999999864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=316.10 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=145.0
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..++++|+++.|++. .|.++||+|++||++||+||||||||||+++|+|+.+|+.|.+. +....+. ..
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~~~~i~-------~~ 335 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT----PEKQILS-------YK 335 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE----SSCCCEE-------EE
T ss_pred ceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCeeeE-------ee
Confidence 468999999999874 57888999999999999999999999999999999998866542 1110000 00
Q ss_pred ccc---CCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC
Q 007982 151 AQE---DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227 (582)
Q Consensus 151 ~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt 227 (582)
.+. .......+++.. ............+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+||||||||
T Consensus 336 ~q~~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 336 PQRIFPNYDGTVQQYLEN-ASKDALSTSSWFFEEVTKRLNLHR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp CSSCCCCCSSBHHHHHHH-HCSSTTCTTSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred chhcccccCCCHHHHHHH-hhhhccchhHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 010 011222222221 111000012345788899999964 678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 228 NHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999988764 67999999999999999999999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=311.76 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=141.6
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e---------
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L--------- 430 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~--------- 430 (582)
|++++|+.....+++++ .+.+|+++||+||||||||||||+|+|+++|++|+|..... .
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 57888975555677777 58999999999999999999999999999999999832110 0
Q ss_pred ----eEEEechhhhh---hc-CCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 431 ----RIAQFHQHLAE---KL-DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 431 ----~~~~~~q~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
...+.+|.... .. ....++.+.+... .....+++.++++.+|+.... ++++.+|||||||||+|||||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLENVL-KRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTGGG-GSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcchh-CCChHHCCHHHHHHHHHHHHHHh
Confidence 00011111000 00 0001222222111 122346788999999998765 46779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|.+|.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999998876 5799999999999999999999998765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=311.75 Aligned_cols=191 Identities=19% Similarity=0.171 Sum_probs=130.6
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCCcEEEE-------cCc--
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLL---------------------KLMTGDLVPLDGMVRR-------HNH-- 429 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl---------------------~ll~Gl~~p~~G~i~~-------~~~-- 429 (582)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+.|.|.. .+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8999999998665532 221
Q ss_pred -----eeEEEechhhhh-----------------hcCCcccHHHHHHhc--C--CCCh----H------HHHHHHHHhcC
Q 007982 430 -----LRIAQFHQHLAE-----------------KLDMDMSALQYMIKE--Y--PGNE----E------EKMRAAIGRFG 473 (582)
Q Consensus 430 -----~~~~~~~q~~~~-----------------~~~~~~~~~~~~~~~--~--~~~~----~------~~~~~~l~~~g 473 (582)
..+++++|.... ......++.+++... . .... . .....+++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 112222221110 001122344433211 0 0000 0 11123588999
Q ss_pred CCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh
Q 007982 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV 548 (582)
Q Consensus 474 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~ 548 (582)
|.+...++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.+.|+++ +.|||+||||++++. .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~ 269 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A 269 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence 97654456779999999999999999999998 99999999999999999999988765 679999999999875 5
Q ss_pred cCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 549 AHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 549 ~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
||+|++| ++|+++ ++|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVV-AAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEE-EEECHHHHHT
T ss_pred CCEEEEecccccccCCEEE-EecCHHHHhc
Confidence 9999999 899996 6899988754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-32 Score=296.47 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=155.4
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-E-EEEcCc--eeEEEechhh
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-M-VRRHNH--LRIAQFHQHL 439 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~-i~~~~~--~~~~~~~q~~ 439 (582)
.++++++|+++.|+ ++||++.+|++++|+||||||||||+|+|+|++.|++| + |...+. ..+++++|.+
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 46788999998884 69999999999999999999999999999999999999 8 887652 3467777765
Q ss_pred hhh-cCCcccHHHHHHh-cC--CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH--HccCCCE----EEE
Q 007982 440 AEK-LDMDMSALQYMIK-EY--PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL--AYRQPHM----LLL 509 (582)
Q Consensus 440 ~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra--l~~~p~l----LlL 509 (582)
... .....++.+++.. .. .....+++..+++.+|+..... +.+|||||||||+|||+ |+.+|++ |||
T Consensus 189 ~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 189 SATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 311 1111233322210 00 0011233556788999976543 47999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecCHH------HHHhhcCE-----EEEEe-CCeEEEEcCCHHHHH
Q 007982 510 DE-PTNHLDIETIDSLAEALNEWDGGLVLVSHDFR------LINQVAHE-----IWVCE-NQAVTRWEGDIMDFK 571 (582)
Q Consensus 510 DE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~ 571 (582)
|| ||++||+. ...|.+++++++.|+|+||||.+ ++..+||+ |++|+ +|+++ +|+..++.
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 99 99999999 88888999999999999999988 88899999 99999 99996 78887764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=281.18 Aligned_cols=108 Identities=23% Similarity=0.322 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC---CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN---PTILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 176 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~---P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
..++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|.++|+++ +.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 346789999999975345789999999999999999999996 7999999999999999999999988654 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYV 285 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 285 (582)
|+||||++++ .+||+|++| ++|+|+ +.|+++++.
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 9999999999 789999999 689997 467877664
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-28 Score=257.29 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEE----eC
Q 007982 486 LSDGQRSRVVFAWLAYRQP--HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVC----EN 557 (582)
Q Consensus 486 LSgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l----~~ 557 (582)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++ +.+||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 58999999999887 579999999 99
Q ss_pred CeEE
Q 007982 558 QAVT 561 (582)
Q Consensus 558 G~i~ 561 (582)
|+++
T Consensus 375 G~~~ 378 (415)
T 4aby_A 375 GRTV 378 (415)
T ss_dssp TEEE
T ss_pred CceE
Confidence 9885
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=277.06 Aligned_cols=108 Identities=28% Similarity=0.455 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC---CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 007982 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLDLEACVWLEETLKKF---DRILV 250 (582)
Q Consensus 177 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi 250 (582)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|+++|+++ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345789999999753567899999999999999999999875 999999999999999999999988764 78999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHH
Q 007982 251 VISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 251 ivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 286 (582)
+||||++++ .+||+|++| ++|+++ ..|+++++..
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~ 942 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVAE 942 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEE-EEESHHHHHT
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE-EecCHHHHHh
Confidence 999999998 589999999 689997 4678777653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=277.12 Aligned_cols=109 Identities=28% Similarity=0.423 Sum_probs=95.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC---CceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 176 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
..++.++|+.+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.++..|++.|+++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4567889999999754567899999999999999999999876 699999999999999999999998765 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 286 (582)
|+||||++++.. ||+|++| ++|+|+ ..|+++++..
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999999865 9999999 889997 5688877653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=254.36 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEE----eC
Q 007982 200 FSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHM----QN 271 (582)
Q Consensus 200 LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l----~~ 271 (582)
|||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|+++ +.|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 58999999999887 579999999 89
Q ss_pred CeEEEE
Q 007982 272 KQLKFY 277 (582)
Q Consensus 272 G~i~~~ 277 (582)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-30 Score=276.95 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=139.7
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-c-eeeeeechHHHHHHHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-S-LEAVISCDEERLKLEKEAEI 148 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~ 148 (582)
.+|+++||++.|+ ++||++++|++++|+||||||||||+|+|+|+..++.+ . +. ++.. . ...
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~----vdg~---~---~~~ 180 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY----INLD---P---QQP 180 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEE----EECC---T---TSC
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEE----EcCC---c---cCC
Confidence 3688999999886 79999999999999999999999999999999887655 3 32 1110 0 001
Q ss_pred hc--cccC------CCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH--HhcCC
Q 007982 149 LG--AQED------GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA--LFINP 218 (582)
Q Consensus 149 ~~--~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra--L~~~P 218 (582)
++ ++.. ......++++ ............++.++++.+|+... .+ +.+|||||||||+|||| |+.+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPTW-GQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTTC-SCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred eeeeccchhhcccccccchhhhhc-ccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCc
Confidence 11 1111 0001111110 00000000012345667888999753 33 88999999999999999 99999
Q ss_pred Cc----eeecC-CCCCCCHHHHHHHHHHHhhcCcEEEEEecCHH------HHHhhcCe-----EEEEe-CCeEEEEcCCh
Q 007982 219 TI----LLLDE-PTNHLDLEACVWLEETLKKFDRILVVISHSQD------FLNGVCTN-----IIHMQ-NKQLKFYTGNF 281 (582)
Q Consensus 219 ~l----LlLDE-Pt~~LD~~~~~~l~~~l~~~~~tviivsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~ 281 (582)
++ ||||| ||++||+. ...|.+++++++.|+|+||||.+ ++..+||+ |++|+ +|+++ .|+.
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~ 333 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDD 333 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCH
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCH
Confidence 99 99999 99999999 88889999999999999999988 88899999 99999 99996 5666
Q ss_pred hH
Q 007982 282 DQ 283 (582)
Q Consensus 282 ~~ 283 (582)
++
T Consensus 334 ~~ 335 (460)
T 2npi_A 334 VY 335 (460)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=241.13 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=74.1
Q ss_pred CCCCCCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCE
Q 007982 481 MPMKNLSDGQRSRVVFAWLAY------RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~ 551 (582)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 467899999999999999999 799999999999999999999999998875 5799999999998 578999
Q ss_pred EEEEeCCeEE
Q 007982 552 IWVCENQAVT 561 (582)
Q Consensus 552 i~~l~~G~i~ 561 (582)
|++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999985
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=238.23 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=75.5
Q ss_pred hccCCCCChhHHHHHHHHHHHh------cCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcC
Q 007982 194 AKKTRDFSGGWRMRIALARALF------INPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCT 264 (582)
Q Consensus 194 ~~~~~~LSGGqrqRv~LAraL~------~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d 264 (582)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++.++.++|+++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 699999999999999999999999998775 5799999999998 57899
Q ss_pred eEEEEeCCeEE
Q 007982 265 NIIHMQNKQLK 275 (582)
Q Consensus 265 ~i~~l~~G~i~ 275 (582)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-26 Score=214.40 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=97.4
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHc
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (582)
|+||++++|++++|+||||||||||++++.+-. . .+..+ .. ...+ ++...........+..+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-----~---~~~~d--~~-----~g~~-~~~~~~~~~~~~~~~~~-- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-----E---VISSD--FC-----RGLM-SDDENDQTVTGAAFDVL-- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-----G---EEEHH--HH-----HHHH-CSSTTCGGGHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-----e---EEccH--HH-----HHHh-cCcccchhhHHHHHHHH--
Confidence 689999999999999999999999999864210 0 11111 10 1112 22222222211122111
Q ss_pred CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHH----------------
Q 007982 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE---------------- 233 (582)
Q Consensus 170 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~---------------- 233 (582)
...+ ......|... .. ......|||||||++||||++.+|++|+|||||++||+.
T Consensus 63 ------~~~~-~~~~~~g~~~-~~-~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 63 ------HYIV-SKRLQLGKLT-VV-DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRK 133 (171)
T ss_dssp ------HHHH-HHHHHTTCCE-EE-ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred ------HHHH-HHHHhCCCeE-EE-ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 1111 1222345543 22 345677999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---cCcEEEEEecCHHHHHh
Q 007982 234 ACVWLEETLKK---FDRILVVISHSQDFLNG 261 (582)
Q Consensus 234 ~~~~l~~~l~~---~~~tviivsHd~~~~~~ 261 (582)
....+.+.|++ .+.|+|+||||++++..
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 55888887644 37899999999999875
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-28 Score=233.56 Aligned_cols=148 Identities=17% Similarity=0.143 Sum_probs=97.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc--------CceeEEEechhhhhhc-CCcccHH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH--------NHLRIAQFHQHLAEKL-DMDMSAL 450 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~--------~~~~~~~~~q~~~~~~-~~~~~~~ 450 (582)
+.+|+++ .+|++++|+||||||||||+++|+|+ +|++|+|... ....++|++|...+.+ .+.....
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~ 87 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH 87 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence 4688885 89999999999999999999999999 9999998431 1124677777653222 1111111
Q ss_pred HHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 451 QYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
..+. .....+.+.++++. |+ ||||||+|||||+.+|++|||||||++ ++..+.+.|++
T Consensus 88 ~~~~---~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 88 DALR---DMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp HHHT---TTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTT
T ss_pred HHHH---HhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHH
Confidence 1111 10112345666665 43 999999999999999999999999999 88888888887
Q ss_pred c--CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 531 W--DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 531 ~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+ +.||| ||||++++.. +...++|.
T Consensus 146 l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 146 LGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp BCTTCEEE-EEEC----------------CC
T ss_pred hcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 6 46888 9999987753 33445554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-26 Score=215.48 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=96.7
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
|+||+|++|++++|+||||||||||++++.+-.. ........++++|...... ......+. ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~d~~~g~~~~~~~~~~-~~~~~~~~---------~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISSDFCRGLMSDDENDQT-VTGAAFDV---------LHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEHHHHHHHHCSSTTCGG-GHHHHHHH---------HHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEccHHHHHHhcCcccchh-hHHHHHHH---------HHH
Confidence 6899999999999999999999999998653211 1111101122222211100 00000110 011
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHH
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE----------------TIDSLAEAL 528 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~l 528 (582)
........|...... . ....||||||||+|||+++.+|++|+|||||++||+. ....+.+.|
T Consensus 65 ~~~~~~~~g~~~~~~-~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 65 IVSKRLQLGKLTVVD-A-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHHHHHHTTCCEEEE-S-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEE-C-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 122223445544333 2 2467999999999999999999999999999999999 557777775
Q ss_pred Hh---cCceEEEEecCHHHHHhh
Q 007982 529 NE---WDGGLVLVSHDFRLINQV 548 (582)
Q Consensus 529 ~~---~~~tvi~vsHd~~~~~~~ 548 (582)
++ .+.|+|+||||++++..+
T Consensus 143 ~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 143 KGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TTHHHHTCSEEEEECSHHHHHHE
T ss_pred hhHHhcCCcEEEEeCCHHHhhhh
Confidence 44 377999999999999753
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-25 Score=209.80 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEc-----CceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRH-----NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~-----~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
+++|+||||||||||+++|+|++... .|..... ....+++.+|... ... . +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~---~~~-~----~--------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE---GKK-K----I--------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT---CCE-E----E---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc---HHH-H----H---------------
Confidence 68999999999999999999998521 2322110 1123555555431 000 0 0
Q ss_pred HHhcCCCC-ccccCCCCCCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCceEEEEe-
Q 007982 469 IGRFGLTG-KAQVMPMKNLSDGQRSRVVFAWL-----AYRQPHMLLLDE--PTNHLDIETIDSLAEALNEWDGGLVLVS- 539 (582)
Q Consensus 469 l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAra-----l~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi~vs- 539 (582)
+..++... ....+++.+||||||||++||++ ++.+|++||||| ||++||+.....+.+.+.+.+.++|++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 11111111 12234567899999999999996 999999999999 9999999999999999998777788888
Q ss_pred --cCHHHHHhhcCEEEEEeCCeEEEE-cCCHHHHHHHHHHHcC
Q 007982 540 --HDFRLINQVAHEIWVCENQAVTRW-EGDIMDFKLHLKAKAG 579 (582)
Q Consensus 540 --Hd~~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~~~~~~~~ 579 (582)
||.+++..+|++ .+|+++.+ ..+.+++.+.+.+.+.
T Consensus 139 ~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l~~~~~ 177 (178)
T 1ye8_A 139 IRDVHPLVKEIRRL----PGAVLIELTPENRDVILEDILSLLE 177 (178)
T ss_dssp SSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHHHHHSC
T ss_pred cCCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHHHHHHh
Confidence 599999999998 44555433 3555677777766553
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=218.29 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=76.6
Q ss_pred hhccCCCCChhHHHHHHHHHHHh----cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeE
Q 007982 193 QAKKTRDFSGGWRMRIALARALF----INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNI 266 (582)
Q Consensus 193 ~~~~~~~LSGGqrqRv~LAraL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i 266 (582)
.+.++.+|||||||||+||+||+ .+|++|||||||++||+..+..+.++|+++ +.++|+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 45678899999999999999997 588999999999999999999999999877 569999999965 56789987
Q ss_pred --EEEeCCeEEEEcCChhH
Q 007982 267 --IHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 267 --~~l~~G~i~~~~g~~~~ 283 (582)
++|.+|.-.....+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888887666555544
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=217.50 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=75.1
Q ss_pred cCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEE-
Q 007982 480 VMPMKNLSDGQRSRVVFAWLAY----RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEI- 552 (582)
Q Consensus 480 ~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i- 552 (582)
+.++.+|||||||||+||++|+ .+|++|||||||++||+..+..+.+.|+++ +.+||+|||+.+ +..+||++
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~ 292 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLH 292 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEE
Confidence 3456899999999999999997 689999999999999999999999999887 568999999975 45789987
Q ss_pred -EEEeCCeEEEEcCCHHH
Q 007982 553 -WVCENQAVTRWEGDIMD 569 (582)
Q Consensus 553 -~~l~~G~i~~~~g~~~~ 569 (582)
++|.+|.......+.++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 88888887655666555
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-26 Score=224.20 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=92.7
Q ss_pred EECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchH
Q 007982 81 TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160 (582)
Q Consensus 81 ~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (582)
+|+++.+|+++ ++|++++|+||||||||||+++|+|+ +|+.|.+... ......... ...+++.++.....+
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-~~~~~~~~~---~~~ig~v~q~~~enl 79 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-ILTRPAVEA---GEKLGFLPGTLNEKI 79 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-EEEECSCCT---TCCCCSSCC------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-EecCCchhh---hcceEEecCCHHHHH
Confidence 45667788886 89999999999999999999999999 8776655321 111000000 011221111110000
Q ss_pred ----HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHH
Q 007982 161 ----ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236 (582)
Q Consensus 161 ----~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~ 236 (582)
...+..+.... ...++.++++. |+ ||||||+|||||+.+|++|||||||++ ++.
T Consensus 80 ~~~~~~~~~~~~~~~---~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 80 DPYLRPLHDALRDMV---EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp CTTTHHHHHHHTTTS---CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 00111111100 01234444443 32 999999999999999999999999999 888
Q ss_pred HHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCC
Q 007982 237 WLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNK 272 (582)
Q Consensus 237 ~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G 272 (582)
.+.++|+++ +.||| ||||++++.. +..+.+|
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G 170 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSG 170 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC----------------C
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCc
Confidence 888888876 56888 9999987653 3444555
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-24 Score=204.89 Aligned_cols=74 Identities=5% Similarity=0.005 Sum_probs=68.4
Q ss_pred hhhccCCCCChhHHHHHHHHHH-----HhcCCCceeecC--CCCCCCHHHHHHHHHHHhhcCcEEEEEe---cCHHHHHh
Q 007982 192 MQAKKTRDFSGGWRMRIALARA-----LFINPTILLLDE--PTNHLDLEACVWLEETLKKFDRILVVIS---HSQDFLNG 261 (582)
Q Consensus 192 ~~~~~~~~LSGGqrqRv~LAra-----L~~~P~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tviivs---Hd~~~~~~ 261 (582)
..++++.+||||||||++||+| |+.+|++||||| ||++||+..+.++.+.+.+.+.|+|++| ||++++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 3567889999999999999996 999999999999 9999999999999999998777788888 59999999
Q ss_pred hcCe
Q 007982 262 VCTN 265 (582)
Q Consensus 262 ~~d~ 265 (582)
+|++
T Consensus 149 i~~r 152 (178)
T 1ye8_A 149 IRRL 152 (178)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 9998
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-25 Score=237.66 Aligned_cols=171 Identities=9% Similarity=0.011 Sum_probs=128.7
Q ss_pred ceeeEeeeEEEecCC--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--eEEEech
Q 007982 380 NLIYKNLDFGVDLDS--------------------RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--RIAQFHQ 437 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge--------------------~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--~~~~~~q 437 (582)
+.+++++||+|.+|+ ++||+||||||||||+|+|+|+++|++|+|...+.. +.++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 999999999999999999999999999999765421 1245555
Q ss_pred hhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChh--HHHHHHHHHHHcc----------CCC
Q 007982 438 HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDG--QRSRVVFAWLAYR----------QPH 505 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG--qkqrv~lAral~~----------~p~ 505 (582)
+. .....++.++...... ...+.++++.+++.+.. ..+ . ||+| |+||+.||++|+. +|+
T Consensus 116 ~~---~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~~-~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEYD-FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CS---SCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGCS-EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cc---ccCCeeehHhhcccch---HHHHHHHHHHcCCCccC-CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 42 1122233222211111 23467889999987542 233 3 9999 9999999999999 999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--------C----ceEEEEecCHHH--HHhhcCEEE-EEeCCe
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW--------D----GGLVLVSHDFRL--INQVAHEIW-VCENQA 559 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~--------~----~tvi~vsHd~~~--~~~~~d~i~-~l~~G~ 559 (582)
+|+|||||+|||+.++..+.+.|+++ + .+|+++||+++. +.++||+|. .+..|+
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999999999988887776554 1 358889999987 889999885 344444
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=202.36 Aligned_cols=81 Identities=27% Similarity=0.417 Sum_probs=70.4
Q ss_pred hhccCCCCChhHHH------HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhc
Q 007982 193 QAKKTRDFSGGWRM------RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVC 263 (582)
Q Consensus 193 ~~~~~~~LSGGqrq------Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~ 263 (582)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|+++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 35788999999999 678888888999999999999999999999999998765 469999999965 56799
Q ss_pred CeEEEEe--CCeE
Q 007982 264 TNIIHMQ--NKQL 274 (582)
Q Consensus 264 d~i~~l~--~G~i 274 (582)
|++++|+ +|..
T Consensus 321 d~~~~l~~~~g~s 333 (339)
T 3qkt_A 321 DHVIRISLENGSS 333 (339)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEecCCcc
Confidence 9999986 4543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-26 Score=230.26 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=122.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDM 445 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 445 (582)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|.. +++|... + +
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~-------~v~q~~~--l-f 165 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS-------FANHKSH--F-W 165 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC-------GGGTTSG--G-G
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE-------EecCccc--c-c
Confidence 488999999996 57999999999999999999999999999999999999 799853 3334321 1 1
Q ss_pred cccHHH-HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 446 DMSALQ-YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 446 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
..++.+ ++... +... ..+.+.++.+ +..... ...|||||||| |||++.+|+||| |++||+.+...+
T Consensus 166 ~~ti~~~ni~~~-~~~~-~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAALV-DDAT-HACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEEE-EEEC-HHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhccC-cccc-HHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 112221 11110 1111 2455566664 443222 46899999999 999999999999 999999998877
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
.. +||++..+ ..||+| +|++|+++ ..|+.+++....+
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el~~~y~ 269 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADWKSFFV 269 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHHHHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHHHHHHH
Confidence 52 29999876 689999 99999996 5899998844343
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=195.82 Aligned_cols=85 Identities=18% Similarity=0.069 Sum_probs=76.1
Q ss_pred hccCC-CCChhHHHHHHHHHHHh---------cCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhc
Q 007982 194 AKKTR-DFSGGWRMRIALARALF---------INPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVC 263 (582)
Q Consensus 194 ~~~~~-~LSGGqrqRv~LAraL~---------~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~ 263 (582)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++..|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45677 79999999999999999 8999999999999999999999999999887899999995 43 89
Q ss_pred CeEEEEeCCeEEEEcCChhH
Q 007982 264 TNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 264 d~i~~l~~G~i~~~~g~~~~ 283 (582)
|++++|++|+++. .|++++
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~ 353 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEM 353 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTT
T ss_pred CEEEEEECCEEEe-cCCHHH
Confidence 9999999999974 566554
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=197.17 Aligned_cols=80 Identities=30% Similarity=0.402 Sum_probs=68.7
Q ss_pred cCCCCCCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcC
Q 007982 480 VMPMKNLSDGQRS------RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 480 ~~~~~~LSgGqkq------rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d 550 (582)
.+++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.+.|.++ +.+||+||||.++ ..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCC
Confidence 3467899999999 677888888999999999999999999999999998875 4589999999764 57999
Q ss_pred EEEEEe--CCeE
Q 007982 551 EIWVCE--NQAV 560 (582)
Q Consensus 551 ~i~~l~--~G~i 560 (582)
++++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999985 5543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-22 Score=207.81 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=122.5
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------------eeEEEechhhhhhcCCc
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------------LRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~ 446 (582)
.++||++.+|++++|+||||||||||++.|+|+++|++|+|...+. ..+++++|... ...+.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 4578889999999999999999999999999999999999986542 12566666532 02333
Q ss_pred ccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHH
Q 007982 447 MSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 447 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~ 523 (582)
.++.+++.... ...+ ..+++.+|+.+... .++.+|| +||++|||+++.+|+ +|+|| ||+|||+....
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCSSCCH-HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCCcchh-HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-
Confidence 45555543210 0100 12456778765443 4567899 999999999999999 99999 99999997652
Q ss_pred HHHHHHhcCceEEEEec---------CHHHHHhhcCEEEEEeCCeE
Q 007982 524 LAEALNEWDGGLVLVSH---------DFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 524 l~~~l~~~~~tvi~vsH---------d~~~~~~~~d~i~~l~~G~i 560 (582)
.+.-+..+.|+|++|| .+..+..++..|.++..|+.
T Consensus 240 -~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 3333356889999999 66778788899999999965
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-23 Score=211.73 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=106.9
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
+++++||.|.+|++++|+||||||||||+++|+|+++|++|.|...+...+. .+++ ..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~-------------------~~-- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHH-------------------KN-- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSC-------------------SS--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccc-------------------hh--
Confidence 7899999999999999999999999999999999999999999886542100 0000 00
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 007982 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD 541 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 541 (582)
.+++ . .. |||+||++||+||..+|++|||||||+ .+..+ +.+.+..-+.|+|+++|+
T Consensus 218 ---------~i~~---~-----~g--gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~-~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 218 ---------YTQL---F-----FG--GNITSADCLKSCLRMRPDRIILGELRS---SEAYD-FYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ---------EEEE---E-----CB--TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHH-HHHHHHTTCCCEEEEEEC
T ss_pred ---------EEEE---E-----eC--CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHH-HHHHHhcCCCEEEEEEcc
Confidence 0000 0 01 899999999999999999999999998 23222 223333323479999999
Q ss_pred HHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 542 FRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 542 ~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
.+ +...|||+++|.+|......-+.+.....+..
T Consensus 275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~ 308 (330)
T 2pt7_A 275 GS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKD 308 (330)
T ss_dssp SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHT
T ss_pred cH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHH
Confidence 99 66899999999887531112344444444443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-23 Score=222.87 Aligned_cols=171 Identities=11% Similarity=0.100 Sum_probs=120.9
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHH
Q 007982 85 HDLIVDSELELNYGR--------------------RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK 144 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge--------------------~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 144 (582)
+.+|+++||+|++|+ +++|+||||||||||+|+|+|+.+++.+.+. ..+.... .
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~----~~g~~~t--~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK----TGVVEVT--M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC----CCC------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE----ECCeecc--e
Confidence 468999999999999 9999999999999999999999888765432 1111110 0
Q ss_pred HHHHhccccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChh--HHHHHHHHHHHhc----
Q 007982 145 EAEILGAQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGG--WRMRIALARALFI---- 216 (582)
Q Consensus 145 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG--qrqRv~LAraL~~---- 216 (582)
..+.++... .....+.. .+. ....++.++++.+++.+. +..+. |||| |+||++||+||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~-----g~~--~~~~~~~~~L~~~~L~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p 177 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLP-----GIG--STNFPPDTYLEKMKFYEY--DFFII-ISATRFKKNDIDIAKAISMMKKE 177 (413)
T ss_dssp --CCEEEECSSCTTEEEEECC-----CGG--GSSCCHHHHHHHTTGGGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCE
T ss_pred --eEEeccccccCCeeehHhh-----ccc--chHHHHHHHHHHcCCCcc--CCeEE-eCCCCccHHHHHHHHHHHhcCCC
Confidence 011111110 00000000 000 012357788999988642 33444 9999 9999999999999
Q ss_pred ------CCCceeecCCCCCCCHHHHHHHHHHHhhc------------CcEEEEEecCHHH--HHhhcCeEE-EEeCCe
Q 007982 217 ------NPTILLLDEPTNHLDLEACVWLEETLKKF------------DRILVVISHSQDF--LNGVCTNII-HMQNKQ 273 (582)
Q Consensus 217 ------~P~lLlLDEPt~~LD~~~~~~l~~~l~~~------------~~tviivsHd~~~--~~~~~d~i~-~l~~G~ 273 (582)
+|++|||||||++||+.++..+.+.|+++ ..+++++||+++. ++.+||+|. .|..|.
T Consensus 178 ~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 178 FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred eEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999999999999998888776553 2468899999887 899999985 454444
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-24 Score=221.95 Aligned_cols=164 Identities=9% Similarity=0.024 Sum_probs=111.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
+|+++||+|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|+. .|.+. .+..+...+.. ..+..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~---~~v~q~~~lf~--~ti~~ 171 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL---SFANHKSHFWL--ASLAD 171 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---CGGGTTSGGGG--GGGTT
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---EEecCcccccc--ccHHH
Confidence 589999999998 78999999999999999999999999999999999987 23221 11111000000 00000
Q ss_pred ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCC
Q 007982 152 QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231 (582)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD 231 (582)
...... .... ..+.+.++.+ ++.. .+ +..|||||||| ||||+.+|+||| |++||
T Consensus 172 --~ni~~~--------~~~~-----~~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 --TRAALV--------DDAT-----HACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp --CSCEEE--------EEEC-----HHHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred --HhhccC--------cccc-----HHHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 000000 0000 1234445553 3332 23 78999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 232 LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 232 ~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+.+...+.. +||++..+ ..||+| +|++|+++ +.|+.+++
T Consensus 226 ~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 226 VQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp STTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 998887752 28998875 589999 99999996 56776654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=189.78 Aligned_cols=85 Identities=20% Similarity=0.071 Sum_probs=76.2
Q ss_pred CCCC-CCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcC
Q 007982 481 MPMK-NLSDGQRSRVVFAWLAY---------RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 481 ~~~~-~LSgGqkqrv~lAral~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d 550 (582)
+|+. .|||||||||+||++|+ .+|+||||||||++||+..+..|.+.+.++..|+|++||+ +. .||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 4566 79999999999999999 8999999999999999999999999999888889999995 43 899
Q ss_pred EEEEEeCCeEEEEcCCHHHH
Q 007982 551 EIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 551 ~i~~l~~G~i~~~~g~~~~~ 570 (582)
++++|++|++. ..|+++++
T Consensus 336 ~i~~l~~G~i~-~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFT-PVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEE-ECCCTTTS
T ss_pred EEEEEECCEEE-ecCCHHHH
Confidence 99999999997 47877654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-22 Score=215.41 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=131.7
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce------------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------------ 430 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~------------ 430 (582)
++++++++++++.|+.+..+++++ |.|.+|++++|+||||||||||+++|+|+..|+.|.|...+..
T Consensus 128 ~~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 128 PFNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 346789999999996446799999 9999999999999999999999999999999999999876541
Q ss_pred -------eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcC--CCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 431 -------RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFG--LTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 431 -------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
.+++++|... .+....++.++... ..++....+ +.... + .+..||+|| |||+|| +
T Consensus 207 ~~~~l~r~i~~v~q~~~-~~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~l-d-~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADV-SPLLRMQGAAYATR---------IAEDFRDRGQHVLLIM-D-SLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp HHHHHHTEEEEEECTTS-CHHHHHHHHHHHHH---------HHHHHHTTTCEEEEEE-E-CHHHHHHHH-HHHHHH---T
T ss_pred cccccCceEEEEECCCC-CHHHHHHHHHHHHH---------HHHHHHhCCCCHHHHH-H-hHHHHHHHH-HHHHHH---h
Confidence 2455555311 01111222222211 011111111 11111 1 246899999 999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWD------G------GLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
.+|++ |+|||+.....+.+++.+.. + ||+++|||++ ..+||++++|.+|+++ .+++..+
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~~~~ 341 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRRLAE 341 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHHHHH
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCCHHH
Confidence 88888 99999999999999997752 3 8999999999 6789999999999986 3555443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-23 Score=204.33 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=103.5
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEechhhhhhcCCccc
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQHLAEKLDMDMS 448 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q~~~~~~~~~~~ 448 (582)
.-|+||||+|.+|++++|+||||||||||+++|+|++ | |.|.. +. ..++|++|...... ..+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE--DKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH--HHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH--Hhh
Confidence 4689999999999999999999999999999999998 6 88876 21 12345555432100 000
Q ss_pred H-HHHHH-----hcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH-----HHHHccCCCEEEEeCCCCCCC
Q 007982 449 A-LQYMI-----KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF-----AWLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 449 ~-~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l-----Aral~~~p~lLlLDEPt~~LD 517 (582)
. .+++. ..........+.++++...+. .. . .+|||||+||++| |++++.+|++++|||||+++|
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il--~-~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LF--E-MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EE--E-ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EE--E-ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 0 00000 000011234567777765432 11 1 4799999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHhc----------CceEEEEecCHHHHHhhcCEEEE
Q 007982 518 IETIDSLAEALNEW----------DGGLVLVSHDFRLINQVAHEIWV 554 (582)
Q Consensus 518 ~~~~~~l~~~l~~~----------~~tvi~vsHd~~~~~~~~d~i~~ 554 (582)
.++...+.+.+... ....|+|+||++.+...+++++.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 98877777766532 24577888888887777766553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-23 Score=201.62 Aligned_cols=161 Identities=13% Similarity=0.053 Sum_probs=97.3
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC-------ceeEEEechhhhhhcCCcccHHHH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN-------HLRIAQFHQHLAEKLDMDMSALQY 452 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~-------~~~~~~~~q~~~~~~~~~~~~~~~ 452 (582)
.++++| .+|.+|++++|+||||||||||+++|+|++++..+.+.... ...++|++|..... ...++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~--~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF--QQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHH--HHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHH--HHHHhcCC
Confidence 457777 68999999999999999999999999999853322211100 12356666654311 11111111
Q ss_pred HH------h--cCCCCh----HHHHHHH------HHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 453 MI------K--EYPGNE----EEKMRAA------IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 453 ~~------~--~~~~~~----~~~~~~~------l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
+. . ...... .+.+.+. ++.+|+..... ..+..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-TMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-HCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-hcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 10 0 000111 1223333 44455543333 3346777 8899999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEe
Q 007982 515 HL----DIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 515 ~L----D~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
++ |+..+..+.+.+.++ +.|+|+||||++++..+||+|++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888888777654 5699999999999999999999984
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=196.92 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=70.3
Q ss_pred CCCCCC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEE
Q 007982 481 MPMKNL-SDGQRSRVVFAWLAYRQP--HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 481 ~~~~~L-SgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
+|+..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|+++ +.+||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999998776 679999999999885 69999999
Q ss_pred eCC
Q 007982 556 ENQ 558 (582)
Q Consensus 556 ~~G 558 (582)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-22 Score=197.25 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=95.8
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC------------Cceee--eeechHHHHHHHHHHHHhcc
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM------------SSLEA--VISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~------------~~~~~--~i~~~~~~~~~~~~~~~~~~ 151 (582)
.+++| .+|++|++++|+||||||||||+++|+|+.+... +...+ .+..+... +.... ...
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~--~~~ 83 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR--FQQLI--DQG 83 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH--HHHHH--HTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH--HHHHH--hcC
Confidence 46666 6999999999999999999999999998874110 00000 00000000 00000 000
Q ss_pred ccCCCcchHHHHHHHHHcCChhHHHHHHHHH------HHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 152 QEDGGGEQLERVYERLEALDASTAEKRAAEI------LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
..........++ .+...+....++++.+. ++.+|+. ...++++..|| +|+.+|++++|||
T Consensus 84 ~l~~~~~~~~n~--~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDe 149 (207)
T 1znw_A 84 ELLEWAEIHGGL--HRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQA 149 (207)
T ss_dssp CEEEEEEEGGGT--EEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHH
T ss_pred CceeehhhcCch--hhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHH
Confidence 000000000000 00011222334445554 4555553 34567888888 9999999999999
Q ss_pred CCCCC----CHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEe
Q 007982 226 PTNHL----DLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQ 270 (582)
Q Consensus 226 Pt~~L----D~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~ 270 (582)
||++| |+..+..+.++++++ +.|+|+||||++++..+||+|++|.
T Consensus 150 p~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99998 778888888877654 5799999999999999999999985
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=220.81 Aligned_cols=165 Identities=16% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCeEEEEE-----EEEEecCCceeeEeeeEEEec-------CCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCcee
Q 007982 364 PPVLQFVE-----VTFGYTPDNLIYKNLDFGVDL-------DSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431 (582)
Q Consensus 364 ~~~l~~~~-----l~~~y~~~~~~l~~vsl~i~~-------Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~ 431 (582)
.++|++++ |++.|.++..+++|++|++.+ |++++|+||||||||||||+| |++.+. ..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq 817 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ 817 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence 46799999 999995456799999999987 899999999999999999999 988642 12
Q ss_pred EE-EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 432 IA-QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 432 ~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
+| |++|... ..++.+. ++.++|+.+... ...+++|+++++ +++|++++.+|.|||||
T Consensus 818 iG~~Vpq~~~-----~l~v~d~---------------I~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 818 MGCYVPAEVC-----RLTPIDR---------------VFTRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTCCEESSEE-----EECCCSB---------------EEEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred eeEEeccCcC-----CCCHHHH---------------HHHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 33 5555432 1111111 122345543332 234678887765 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHH---Hhc-CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 511 EPTNHLDIETI-DSLAEAL---NEW-DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 511 EPt~~LD~~~~-~~l~~~l---~~~-~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
|||+|+|+... ..+...+ .+. +.++|++|||.+++..+||+++++ +|++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999998763 3334443 333 679999999999999999998887 47765
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-22 Score=207.22 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=127.8
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhh
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK 442 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 442 (582)
++++++++++++.|+.+..+++++ |.|.+|++++|+||||||||||+++|+|+..|+.|.|...+... ......
T Consensus 42 ~~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~ 115 (347)
T 2obl_A 42 PPDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEF 115 (347)
T ss_dssp CSCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHH
T ss_pred CCCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHH
Confidence 456799999999997446789999 99999999999999999999999999999999999887655310 000000
Q ss_pred cCC-cccHHHHH---HhcCCCChHHHHHHHHHhcCCCC---------ccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 443 LDM-DMSALQYM---IKEYPGNEEEKMRAAIGRFGLTG---------KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 443 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
... ....++.. ..........++...+..+++.. ...-..+..||+|| |||++| +.+|++
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred HHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 000 00000000 00000111112221111111110 00002457899999 899999 578877
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW-----DG-----GLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
|+|||+.....+.+++.+. +. ||+++|||++ ..+||+++++.+|+|+ .+++..+
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~~ 252 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELAE 252 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHHT
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHHH
Confidence 9999999999999999875 23 7999999999 6799999999999996 4655544
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-21 Score=203.52 Aligned_cols=164 Identities=14% Similarity=0.099 Sum_probs=121.2
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------------eeEEEechhhhhhcCCcc
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------------LRIAQFHQHLAEKLDMDM 447 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~~ 447 (582)
.+||++.+|++++|+||||||||||++.|+|+++|++|+|...+. ..+++++|... ...+..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChhh
Confidence 478889999999999999999999999999999999999986542 12566666431 022334
Q ss_pred cHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 007982 448 SALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 448 ~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~l 524 (582)
++.+++.... ...+ ..+++.+|+.+... ..+.+|| +||++|||+++.+|+ +|+|| ||+|||+.+..
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCSSCCH-HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCChhhh-hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 4555443210 0000 12456778765443 4567899 999999999999999 99999 99999998653
Q ss_pred HHHHHhcCceEEEEec---------CHHHHHhhcCEEEEEeCCeE
Q 007982 525 AEALNEWDGGLVLVSH---------DFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsH---------d~~~~~~~~d~i~~l~~G~i 560 (582)
.+.-+..+.|+|++|| .+..+...+..|.++..|+.
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2333346889999999 56777788899999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-23 Score=211.39 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=127.4
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEE-----------------------EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFG-----------------------VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD 421 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~-----------------------i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~ 421 (582)
..|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|++.|..
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3588999999994 466666664 88999999999999999999999999999987
Q ss_pred cEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc----CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH
Q 007982 422 GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE----YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 422 G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 496 (582)
|. ..+++++|+.. +.. .++.+++... .+ ..+.+.+.++|+.++ .+... .++..|||||+|||++
T Consensus 119 G~------~~v~~v~qd~~--~~~-~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGF--LYP-NAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGG--BCC-HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCcc--CCc-ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhh
Confidence 64 35788888753 222 2666654311 11 123456788888887 44332 3456999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH-HhhcCEEEEEeCC
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLI-NQVAHEIWVCENQ 558 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~-~~~~d~i~~l~~G 558 (582)
|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+||.+.. ..+++|.+.+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998622 12333334568889998774 3345665555443
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-20 Score=187.12 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=110.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHHHHHHHHHHhccccCCCcchHHHH
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV 163 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (582)
..+|+++++.|++|++++|+||||||||||+++|++...+..+ .+. .+........+.......... .. ......+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~-~~~~e~~~~~~~~r~~~~~~~-~~-~~~~~~l 98 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG-LAMLEESVEETAEDLIGLHNR-VR-LRQSDSL 98 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE-EEESSSCHHHHHHHHHHHHTT-CC-GGGCHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE-EEeCcCCHHHHHHHHHHHHcC-CC-hhhcccc
Confidence 4579999999999999999999999999999999987765533 211 111111111111111111111 11 1111111
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH-HHHHHHHHHHhcCCCceeecCCCC---C---CCH-HHH
Q 007982 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW-RMRIALARALFINPTILLLDEPTN---H---LDL-EAC 235 (582)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq-rqRv~LAraL~~~P~lLlLDEPt~---~---LD~-~~~ 235 (582)
.. ..+........+.++++..++. ....+..+|.++ +||+. |+++..+|++||+||||+ + +|. ...
T Consensus 99 ~~--~~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~ 172 (296)
T 1cr0_A 99 KR--EIIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMI 172 (296)
T ss_dssp HH--HHHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHH
T ss_pred cc--CCCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHH
Confidence 10 0111223344455666544442 223456789999 67776 999999999999999999 4 455 555
Q ss_pred HHHHHHHh----hcCcEEEEEecCH--H--------------------HHHhhcCeEEEEeCCeE
Q 007982 236 VWLEETLK----KFDRILVVISHSQ--D--------------------FLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 236 ~~l~~~l~----~~~~tviivsHd~--~--------------------~~~~~~d~i~~l~~G~i 274 (582)
..+.+.|+ +++.|||++||+. + .+..+||+|++|++|+.
T Consensus 173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 66666664 4578999999994 5 78889999999998864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-20 Score=207.95 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=110.0
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD 171 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (582)
+..|.+|++++|+||||||||||++++++...+.+...- .+........+......+ .++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi-~~~~ee~~~~l~~~~~~~-------------------g~~ 334 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAI-LFAYEESRAQLLRNAYSW-------------------GMD 334 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE-EEESSSCHHHHHHHHHTT-------------------SCC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEE-EEEEeCCHHHHHHHHHHc-------------------CCC
Confidence 458999999999999999999999999987766432111 111111110111111000 111
Q ss_pred hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHH-----HHHHHHHHHh---
Q 007982 172 ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE-----ACVWLEETLK--- 243 (582)
Q Consensus 172 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~-----~~~~l~~~l~--- 243 (582)
+.+ +..+|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||+. .+..+.++++
T Consensus 335 -------~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 335 -------FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp -------HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred -------HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 111 2234443 2456778999999999999999999999999999 99999998 8887776654
Q ss_pred hcCcEEEEEecCH----------HHHHhhcCeEEEEeCCe
Q 007982 244 KFDRILVVISHSQ----------DFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 244 ~~~~tviivsHd~----------~~~~~~~d~i~~l~~G~ 273 (582)
+.+.|+|+|||+. +++..+||+|++|++|+
T Consensus 405 ~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 405 QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 4578999999999 88889999999999886
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=163.32 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=72.2
Q ss_pred hhccCCCCChhHHHHHHHH------HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhc
Q 007982 193 QAKKTRDFSGGWRMRIALA------RALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVC 263 (582)
Q Consensus 193 ~~~~~~~LSGGqrqRv~LA------raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~ 263 (582)
.++++.+|||||||||+|| |||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 8999999999999999999999999999999875 579999999995 57899
Q ss_pred CeEEEEe--CCeE
Q 007982 264 TNIIHMQ--NKQL 274 (582)
Q Consensus 264 d~i~~l~--~G~i 274 (582)
|++++|+ +|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 9999994 5643
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-20 Score=196.51 Aligned_cols=182 Identities=17% Similarity=0.219 Sum_probs=120.1
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHH--
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEI-- 148 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 148 (582)
.++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+++..++.+.+. .+....... ......
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~-~~G~~~~ev--~~~i~~~~ 120 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA-LIGERGREV--NEFLALLP 120 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE-EESCCHHHH--HHHHTTSC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE-EecccHHHH--HHHHHhhh
Confidence 689999999998 78899999 99999999999999999999999999999887744321 111111111 110000
Q ss_pred -------hccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 -------LGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+.+...........+...+. ...+.+.+...+-.-...-..+..||+|| |||++| +.+|++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~r~~~~~~-------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDRPALERMKAAFT-------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp HHHHTTEEEEEECTTSCHHHHHHHHHH-------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred hhhhhceEEEEECCCCCHHHHHHHHHH-------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 00000000001111100000 00111111111110000014678999999 899999 678887
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc-----Cc-----EEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF-----DR-----ILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|+|||+.....+.+++.+. +. ||+++|||++ ..+||++++|.+|+++.
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 9999999999999999765 33 7999999999 68999999999999964
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-21 Score=192.26 Aligned_cols=140 Identities=17% Similarity=0.155 Sum_probs=101.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEcCceeEEEechhhhhhcC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
+++++++++. ++|+++| +.+|++++|+||||||||||+++|+|+++|+ +|.|...+. .+.|+++.... +
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~~-~- 74 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKS-I- 74 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSSS-E-
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcce-e-
Confidence 4556666642 4789999 9999999999999999999999999999998 999976543 12333322100 0
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
... ..+|+.. ..| |++||++|..+|++||||||| |+++...+
T Consensus 75 ------------v~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 75 ------------VNQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp ------------EEE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred ------------eeH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 000 1334321 122 899999999999999999999 99998776
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEE
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
.+.. ..+.+|+++||+.+ +..+|||+++|
T Consensus 117 l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 117 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 6654 34779999999987 45677876544
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=184.19 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=108.6
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEEEcC-ceeEEEechhhh-hhcCCcccHHHHHHh-c
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-MVRRHN-HLRIAQFHQHLA-EKLDMDMSALQYMIK-E 456 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~i~~~~-~~~~~~~~q~~~-~~~~~~~~~~~~~~~-~ 456 (582)
.+|+++++.|.+|++++|+||||||||||++.|+|.+.|.+| .|.+.. ......+...+. ..........+.+.. .
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 478999999999999999999999999999999999999878 564321 110000000000 000111111111110 0
Q ss_pred CCCCh-HHHHHHHHHhcCCCCccccCCCCCCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHH
Q 007982 457 YPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQ-RSRVVFAWLAYRQPHMLLLDEPTN---H---LDI-ETIDSLAEA 527 (582)
Q Consensus 457 ~~~~~-~~~~~~~l~~~gl~~~~~~~~~~~LSgGq-kqrv~lAral~~~p~lLlLDEPt~---~---LD~-~~~~~l~~~ 527 (582)
....+ .+.+.++++..++. .... +..+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~--i~~~-~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH--LYDS-FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE--EECC-CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE--EECC-CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 00011 12233444433331 2222 25789999 56666 999999999999999999 5 455 555666666
Q ss_pred HH----hcCceEEEEecCH--H--------------------HHHhhcCEEEEEeCCeE
Q 007982 528 LN----EWDGGLVLVSHDF--R--------------------LINQVAHEIWVCENQAV 560 (582)
Q Consensus 528 l~----~~~~tvi~vsHd~--~--------------------~~~~~~d~i~~l~~G~i 560 (582)
|+ +.+.+||++||+. + .+.++||+|++|++|+.
T Consensus 179 L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 64 3478999999995 5 78889999999998864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=207.09 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=102.3
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHH--------hCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM--------TGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQ 451 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll--------~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 451 (582)
..+++|++|++.+|++++|+||||||||||||+| .|.+.|..+.. ++.+.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~~~~d--------------- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------VSIVD--------------- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------EECCS---------------
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------chHHH---------------
Confidence 4688999999999999999999999999999999 66555543221 11110
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----H
Q 007982 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA--YRQPHMLLLDEPTNHLDIETIDSL----A 525 (582)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD~~~~~~l----~ 525 (582)
.++.++|+.+. ....+|+|+.+++.+|+++ +.+|+||||||||+|+|+.....+ .
T Consensus 707 ---------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il 767 (934)
T 3thx_A 707 ---------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS 767 (934)
T ss_dssp ---------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHH
T ss_pred ---------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 12334444322 2246888888888888888 999999999999999999877665 3
Q ss_pred HHHHh-cCceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 526 EALNE-WDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 526 ~~l~~-~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
+.+.+ .+.++|++|||.++. .+||++..+.+|++.
T Consensus 768 ~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 768 EYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred HHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 33333 478999999998766 699999888888875
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-19 Score=160.81 Aligned_cols=80 Identities=30% Similarity=0.382 Sum_probs=70.7
Q ss_pred cCCCCCCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcC
Q 007982 480 VMPMKNLSDGQRSRVVFA------WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 480 ~~~~~~LSgGqkqrv~lA------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d 550 (582)
++++.+|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 356789999999999876 8999999999999999999999999999999876 469999999995 568999
Q ss_pred EEEEE--eCCeE
Q 007982 551 EIWVC--ENQAV 560 (582)
Q Consensus 551 ~i~~l--~~G~i 560 (582)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 46643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-20 Score=190.38 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=119.7
Q ss_pred eEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHH--HHHhcc
Q 007982 78 LSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKE--AEILGA 151 (582)
Q Consensus 78 ls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~--~~~~~~ 151 (582)
+...|+....++++||++++|++++|+||||||||||+++|+++..++.+.+.. ...+..+. .+... ...+.+
T Consensus 80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l-~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM-AAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE-ECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE-EeecccchhHHHHHHHHHHhcCceE
Confidence 333444433346789999999999999999999999999999988776554321 11111111 11111 112222
Q ss_pred ccCCC--cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCC
Q 007982 152 QEDGG--GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPT 227 (582)
Q Consensus 152 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt 227 (582)
..+.. ......+++.+... ........+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+|| ||
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~---~~~~~d~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRG---KEEGYDVVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHH---HHTTCSEEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred EEecCCccCHHHHHHHHHHHH---HHcCCcchHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 22111 11112222222110 00000113456778764 4567888999 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHhhcCcEEEEEec---------CHHHHHhhcCeEEEEeCCeE
Q 007982 228 NHLDLEACVWLEETLKKFDRILVVISH---------SQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~~~tviivsH---------d~~~~~~~~d~i~~l~~G~i 274 (582)
+|||+.... .++-+..+.|+|++|| .++.+..++..|.++..|+.
T Consensus 231 sglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999998653 3333456889999999 57788888999999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-19 Score=212.06 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=108.8
Q ss_pred cceEEee-----eEEEE-CCeeeeEeeeEEEeC-------CcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechH
Q 007982 71 RDIRIES-----LSVTF-HGHDLIVDSELELNY-------GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE 137 (582)
Q Consensus 71 ~~i~v~n-----ls~~y-~~~~il~~vsl~i~~-------Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~ 137 (582)
.+|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||+| |+...-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~------------ 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM------------ 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH------------
Confidence 3699999 99999 667899999999987 999999999999999999999 654310
Q ss_pred HHHHHHHHHHHhc-cccCCC--cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 138 ERLKLEKEAEILG-AQEDGG--GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
..++ +.+... .... +.++..+|+.+. ..+..+++|+++++ +++|+++
T Consensus 816 ---------aqiG~~Vpq~~~~l~v~-------------------d~I~~rig~~d~-~~~~~stf~~em~~-~a~al~l 865 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVCRLTPI-------------------DRVFTRLGASDR-IMSGESTFFVELSE-TASILMH 865 (1022)
T ss_dssp ---------HTTTCCEESSEEEECCC-------------------SBEEEECC----------CHHHHHHHH-HHHHHHH
T ss_pred ---------hheeEEeccCcCCCCHH-------------------HHHHHHcCCHHH-HhhchhhhHHHHHH-HHHHHHh
Confidence 0011 000000 0000 011223454432 23456778888775 9999999
Q ss_pred hcCCCceeecCCCCCCCHHHH-HHHHHH---Hhhc-CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 215 FINPTILLLDEPTNHLDLEAC-VWLEET---LKKF-DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~-~~l~~~---l~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
+.+|+++||||||+|+|+... ..+..+ |.+. +.++|++||+++++..+||++.++ +|++.
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999999998763 333444 4433 789999999999999999999887 47775
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-21 Score=181.93 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEechhhhhhcCCcccHHHHHHhcCCCChHH
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEE 463 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (582)
|++++|+||||||||||+++|+|+++ ++| |...+. ..+++.+|.+... .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~----~---------------- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGT----R---------------- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSC----E----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccc----e----------------
Confidence 78999999999999999999999998 889 754331 2345555543110 0
Q ss_pred HHHHHHHhcCCCCc------cccCCCCCCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhc
Q 007982 464 KMRAAIGRFGLTGK------AQVMPMKNLSDGQRSRV-VFAW---LAYRQPHMLLLDE--PTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 464 ~~~~~l~~~gl~~~------~~~~~~~~LSgGqkqrv-~lAr---al~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~ 531 (582)
..+..+++... ....+...+|+||++++ ++++ |+..+|++||||| ||+.+|+...+.|.+++..+
T Consensus 59 ---~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 59 ---GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp ---EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred ---ehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 01112222111 11223446999999888 4454 5789999999999 99999999999999999987
Q ss_pred CceEE---EEecCH--HHHHhhcCEEEEEeCCeEEEE-cCCHHHHHHHHHHHc
Q 007982 532 DGGLV---LVSHDF--RLINQVAHEIWVCENQAVTRW-EGDIMDFKLHLKAKA 578 (582)
Q Consensus 532 ~~tvi---~vsHd~--~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~~~~~~~ 578 (582)
...|| .||||. .++.+++ .+++|+|+.. ..+.+.+.+.+-+.+
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~~~~nr~~~~~~i~~~~ 184 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNVTKENRNHLLPDIVTCV 184 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEECCSSSGGGHHHHHHHHH
T ss_pred CcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEeChHhHHHHHHHHHHHH
Confidence 55553 456987 5555554 4567777543 345555555554444
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-20 Score=200.08 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=121.7
Q ss_pred cceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH---HHH-HH--
Q 007982 71 RDIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE---RLK-LE-- 143 (582)
Q Consensus 71 ~~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~---~~~-~~-- 143 (582)
..++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+++..++.+. +.+.+. ... +.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~----i~~~G~r~~ev~~~~~~ 204 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV----VGLIGERGREVKDFIEN 204 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE----EEEESCCHHHHHHHHHT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEE----EEEeceecHHHHHHHHh
Confidence 3689999999998 77899999 999999999999999999999999999998877543 222222 111 10
Q ss_pred -----HHHHHhcc--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-hhhhhccCCCCChhHHHHHHHHHHHh
Q 007982 144 -----KEAEILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFN-KTMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 144 -----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
.....+.+ +..........+.+.... ..+....-+-. ..+. ..+..||+|| |||+|| +
T Consensus 205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~l-d~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATR---------IAEDFRDRGQHVLLIM-DSLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH---------HHHHHHTTTCEEEEEE-ECHHHHHHHH-HHHHHH---T
T ss_pred hccccccCceEEEEECCCCCHHHHHHHHHHHHH---------HHHHHHhCCCCHHHHH-HhHHHHHHHH-HHHHHH---h
Confidence 01111222 211111111111111110 01111111100 0122 2367899999 999999 8
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhcC------c------EEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKFD------R------ILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
.+|++ |+|||+.....+.+++.+.. . ||+++|||++ ..+||++++|.+|+++.
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 88888 99999999999999997652 2 8999999999 67999999999999964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-21 Score=202.89 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=95.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
.+++++||.+++|++++|+||||||||||+++|+++.+++.+.+ .+++.. .+... .
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i----~i~~~~--------e~~~~--~---------- 214 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII----SIEDTE--------EIVFK--H---------- 214 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE----EEESSC--------CCCCS--S----------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE----EECCee--------ccccc--c----------
Confidence 37899999999999999999999999999999999998875543 222110 00000 0
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
.. +.+++ +.. |||+||++||+||..+|++|||||||+. +... +++.+..-
T Consensus 215 ----~~------------~~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g 264 (330)
T 2pt7_A 215 ----HK------------NYTQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSG 264 (330)
T ss_dssp ----CS------------SEEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTT
T ss_pred ----ch------------hEEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcC
Confidence 00 00000 001 8999999999999999999999999982 2222 22333322
Q ss_pred CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 246 DRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 246 ~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
+.|+|+++|+.+ +...|||+++|.+|.
T Consensus 265 ~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 265 HKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 347999999998 778999999998875
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-19 Score=204.09 Aligned_cols=154 Identities=17% Similarity=0.097 Sum_probs=106.6
Q ss_pred ceEEeeeEEEE-----CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc--------CCCCCCCceeeeeechHH
Q 007982 72 DIRIESLSVTF-----HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE--------IEASDMSSLEAVISCDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y-----~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~--------~~~~~~~~~~~~i~~~~~ 138 (582)
.|.+++...-+ ++..+++|++|++++|++++|+||||||||||||+|+. ...|... ..+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~---~~~~---- 703 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES---AEVS---- 703 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE---EEEE----
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc---ccch----
Confidence 46666654333 23568999999999999999999999999999999953 2111100 0000
Q ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH--hc
Q 007982 139 RLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL--FI 216 (582)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL--~~ 216 (582)
.+..++..+|+.+ .....+|+|+.+++.+|+++ +.
T Consensus 704 ---------------------------------------~~d~i~~~ig~~d----~l~~~lStf~~e~~~~a~il~~a~ 740 (934)
T 3thx_A 704 ---------------------------------------IVDCILARVGAGD----SQLKGVSTFMAEMLETASILRSAT 740 (934)
T ss_dssp ---------------------------------------CCSEEEEECC-------------CHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------HHHHHHHhcCchh----hHHHhHhhhHHHHHHHHHHHHhcc
Confidence 0012334455432 23456888888888888888 99
Q ss_pred CCCceeecCCCCCCCHHHHHHH----HHHHhh-cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 217 NPTILLLDEPTNHLDLEACVWL----EETLKK-FDRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l----~~~l~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
+|++|||||||+|||+.....+ .+.+.+ .+.++|++||+.++. .+||++..|.+|++..
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTA 804 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEE
Confidence 9999999999999999877655 344443 478999999997655 6999999999998864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-21 Score=186.58 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=90.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHH
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVY 164 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (582)
..-|+|+||+|++|++++|+||||||||||+++|+|+.+ |.+...+........ ......+.+.+.. ...+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p---G~i~~g~~~~~~~~~-~~~~~~i~~~~~~-----~~~~ 80 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP---NYFYFSVSCTTRKKR-EKEKEGVDYYFID-----KTIF 80 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST---TTEEECCCEECSCCC-SSCCBTTTBEECC-----HHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC---CcEEEeecccCCCCC-cccccCCeEEECC-----HHHH
Confidence 457999999999999999999999999999999999873 222211100000000 0000000000000 0000
Q ss_pred HHHH----c-----C-C--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH-----HHHHhcCCCceeecCCC
Q 007982 165 ERLE----A-----L-D--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL-----ARALFINPTILLLDEPT 227 (582)
Q Consensus 165 ~~l~----~-----~-~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L-----AraL~~~P~lLlLDEPt 227 (582)
..+. . + . .......+.++++...+. ..+ .+|||||+||++| |++|+.+|++++|||||
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp HHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred HHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 0000 0 0 0 000123456666655431 222 5899999999999 89999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----------CcEEEEEecCHHHHHhhcCeEE
Q 007982 228 NHLDLEACVWLEETLKKF----------DRILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~----------~~tviivsHd~~~~~~~~d~i~ 267 (582)
+++|..+...+.+.|.+. ....|+++||++.+...+++++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 999998877777766542 2345556666665555555444
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-21 Score=201.83 Aligned_cols=179 Identities=12% Similarity=0.034 Sum_probs=115.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEE-----------------------EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELE-----------------------LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~-----------------------i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
.|+++||++.|. +++++++|. +++|+++||+||||||||||+++|+|+..+..+.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 689999999995 566666654 7899999999999999999999999987764331
Q ss_pred -eeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 129 -LEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 129 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
..+.+..+...... ...+.+..... ...+.......+.++|+.++ .. ..+.++..|||||+||
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~~-------------~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qR 184 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMHR-------------KGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDI 184 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTTC-------------TTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEE
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhh
Confidence 11222222111000 11111111000 01111122345666777776 32 2346788999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHH-HhhcCeEEEEeCCe
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFL-NGVCTNIIHMQNKQ 273 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~-~~~~d~i~~l~~G~ 273 (582)
+++|+|++.+|+|||||||+..+|+.. ..+.++--.+|+|+|+.+.. ..+++|.+.+.++.
T Consensus 185 v~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 185 IPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred hhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998521 12333323457788887663 44566666555543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-19 Score=186.83 Aligned_cols=175 Identities=12% Similarity=0.079 Sum_probs=115.3
Q ss_pred EeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHH--HHHhccccCC-C-cchH
Q 007982 89 VDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKE--AEILGAQEDG-G-GEQL 160 (582)
Q Consensus 89 ~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~--~~~~~~~~~~-~-~~~~ 160 (582)
..+||++++|++++|+||||||||||+++|+++..++.+.+.. ...+..+. .+... ...+.+.... . ....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l-~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM-AAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE-ECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE-ecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 4688999999999999999999999999999988766554321 11111111 11111 1122222211 1 1222
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHH
Q 007982 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWL 238 (582)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l 238 (582)
..+++.+... .....-..+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+|| ||+|||+.+..
T Consensus 227 ~tv~e~l~~~---~~~~~d~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 227 TVLSKAVKRG---KEEGYDVVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHH---HHTTCSEEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hhHHHHHHHH---HhCCCHHHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 2222222100 00000013456778764 3567888999 999999999999999 99999 99999998653
Q ss_pred HHHHhhcCcEEEEEec---------CHHHHHhhcCeEEEEeCCeE
Q 007982 239 EETLKKFDRILVVISH---------SQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 239 ~~~l~~~~~tviivsH---------d~~~~~~~~d~i~~l~~G~i 274 (582)
.++-+..+.|+|++|| .+..+..++..|.++..|+.
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 3333456889999999 46777888899999998864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-20 Score=188.40 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEEEechhhhhhcCCcccHHHHHHhcCC---CChHH
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIAQFHQHLAEKLDMDMSALQYMIKEYP---GNEEE 463 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~ 463 (582)
.++|+||||||||||+++|+|+..|++|+|...+. ..+++++|... +....|+.+++..... ....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 47999999999999999999999999999876542 35788888643 3344455444322111 11112
Q ss_pred HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHH
Q 007982 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFR 543 (582)
Q Consensus 464 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 543 (582)
.+..++. .. .......+|||||+|||++||+++. +++|||||.+||+.....+ +.+.+. .+||+|.|..+
T Consensus 82 ~i~~~~~----~~-~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l-~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN----EQ-YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFM-KHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH----HH-HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHH-HHHHTT-SEEEEEETTGG
T ss_pred HHHHHHH----HH-HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHH-HHHHhc-CcEEEEEeccc
Confidence 3333333 12 2223457999999999999999886 9999999999999885544 445554 78888888765
Q ss_pred H
Q 007982 544 L 544 (582)
Q Consensus 544 ~ 544 (582)
.
T Consensus 152 ~ 152 (270)
T 3sop_A 152 T 152 (270)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-19 Score=201.87 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=94.4
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcC
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEY 457 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 457 (582)
+..+++|++|++.+|++++|+||||||||||||+|+++... ..|.........++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~----------------------- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGI----------------------- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEEC-----------------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhH-----------------------
Confidence 35789999999999999999999999999999999754211 011000000000110
Q ss_pred CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHHh----cC
Q 007982 458 PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA-EALNE----WD 532 (582)
Q Consensus 458 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~----~~ 532 (582)
+..++.++|+.+... ...+++|+|++|++.++++ +.+|+||||||||+|||+.....+. ..+.. .+
T Consensus 716 -------~d~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 716 -------VDGIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp -------CSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 011233445544332 3457899999999999999 8999999999999999998877665 34332 46
Q ss_pred ceEEEEecCHHHHHhhcCE
Q 007982 533 GGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 533 ~tvi~vsHd~~~~~~~~d~ 551 (582)
.+||++|||.+++ .+||+
T Consensus 787 ~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 787 SLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp CEEEEECSCGGGG-GHHHH
T ss_pred CeEEEEeCcHHHH-HHHhh
Confidence 8999999998876 45554
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-19 Score=203.17 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=99.5
Q ss_pred ceEEeeeEEEE-------CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHH
Q 007982 72 DIRIESLSVTF-------HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y-------~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 144 (582)
.|.+++...-+ ++..+++|+||++++|++++|+||||||||||||+|+++...
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46666654332 246789999999999999999999999999999999743110
Q ss_pred HHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 145 EAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
.....+.+..... +. .+..++..+|+.+. ..+..+.+|+||+|++.|+++ +.+|++||||
T Consensus 700 -aq~g~~vpa~~~~--------i~---------~~d~i~~~ig~~d~-l~~~~stfs~em~~~~~il~~-a~~p~LlLLD 759 (918)
T 3thx_B 700 -AQIGSYVPAEEAT--------IG---------IVDGIFTRMGAADN-IYKGRSTFMEELTDTAEIIRK-ATSQSLVILD 759 (918)
T ss_dssp -HHHTCCBSSSEEE--------EE---------CCSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEE
T ss_pred -hhcCccccchhhh--------hh---------HHHHHHHhCChHHH-HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEe
Confidence 0000000000000 00 01112334555433 345678999999999999999 8999999999
Q ss_pred CCCCCCCHHHHHHHH-HHHh----hcCcEEEEEecCHHHHHhhcCe
Q 007982 225 EPTNHLDLEACVWLE-ETLK----KFDRILVVISHSQDFLNGVCTN 265 (582)
Q Consensus 225 EPt~~LD~~~~~~l~-~~l~----~~~~tviivsHd~~~~~~~~d~ 265 (582)
|||+|||+.....+. .++. +.+.|+|++||+++++ .+||+
T Consensus 760 EP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 760 ELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 999999998877665 3433 2478999999998765 45553
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=198.64 Aligned_cols=146 Identities=24% Similarity=0.255 Sum_probs=106.6
Q ss_pred eEEEEEEEEEec--CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEcCceeEEEechhhhhh
Q 007982 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRHNHLRIAQFHQHLAEK 442 (582)
Q Consensus 366 ~l~~~~l~~~y~--~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~~ 442 (582)
.|.+++...-.- ++..+++|+||+ |++++|+||||||||||||+|+|+.. |..|.+.......+++++|.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~--- 623 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--- 623 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh---
Confidence 466666632110 235689999998 99999999999999999999999874 677865422222344333311
Q ss_pred cCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCC---CCCCC
Q 007982 443 LDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA--YRQPHMLLLDEP---TNHLD 517 (582)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEP---t~~LD 517 (582)
..+++.+.. ...+|+|+++++.+|+++ +.+|++|||||| |++||
T Consensus 624 ---------------------------~~~~~~d~l----~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 624 ---------------------------TRIGASDDL----AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp ---------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred ---------------------------ccCCHHHHH----HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 112221111 135799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHhcCceEEEEecCHHHHHhhc
Q 007982 518 IETI-DSLAEALNEWDGGLVLVSHDFRLINQVA 549 (582)
Q Consensus 518 ~~~~-~~l~~~l~~~~~tvi~vsHd~~~~~~~~ 549 (582)
..+. ..+.+.|.+.+.++|++|||.++.. +|
T Consensus 673 ~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 673 GVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9886 5788888887889999999998873 54
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-19 Score=176.45 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=101.0
Q ss_pred CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc-CceeEEEechhhhhhcCCcccHHHHHHhc
Q 007982 378 PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH-NHLRIAQFHQHLAEKLDMDMSALQYMIKE 456 (582)
Q Consensus 378 ~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 456 (582)
+++.+|+|+||++.+|+++||+||||||||||+++|+|++ |.+... ....+++++|.. +....+..++....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 3467999999999999999999999999999999999976 433211 122477777762 22334554443211
Q ss_pred ---C--CC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007982 457 ---Y--PG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528 (582)
Q Consensus 457 ---~--~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 528 (582)
+ .. .+.+.+.+.|+.+ .... ..++..||+||+||+.+ ++++.+|+++|||||....|.. +.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l--~~~~-~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~~-- 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI--VEGK-TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IRD-- 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH--HTTC-CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HHT--
T ss_pred ccCCCCCCcccccHHHHHHHHHHH--HCCC-CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HHH--
Confidence 1 11 1234455666654 2222 23457899999999988 5888899999999998888764 211
Q ss_pred HhcCceEEEEecC-HHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 529 NEWDGGLVLVSHD-FRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 529 ~~~~~tvi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
-.+.+|+++||+ ......+++++ ++|. +.++..+..
T Consensus 153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~------~~e~~~~~~ 189 (245)
T 2jeo_A 153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR------DLEQILTQY 189 (245)
T ss_dssp -TCSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred -hcCeEEEEECCHHHHHHHHHHHHH---HcCC------CHHHHHHHH
Confidence 136799999997 55555566555 5553 455555443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=162.02 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=103.9
Q ss_pred ceeeEeeeE-EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHh-cC
Q 007982 380 NLIYKNLDF-GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK-EY 457 (582)
Q Consensus 380 ~~~l~~vsl-~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~ 457 (582)
.+.|+++.+ .+.+|++++|+||||||||||++.|++...+..|.|.+.+... .... ....+.. .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~----------~~~~~~~~~~ 75 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDS----------IIRQAKQFNW 75 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHH----------HHHHHHHTTC
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHH----------HHHHHHHhcc
Confidence 456788877 7999999999999999999999999998877777765422100 0000 0000000 00
Q ss_pred CCCh--HHH---HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHH
Q 007982 458 PGNE--EEK---MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHL--DIETIDSLAEAL 528 (582)
Q Consensus 458 ~~~~--~~~---~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l 528 (582)
.... ... +......++ .. ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 76 DFEEYIEKKLIIIDALMKEKE-DQ----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp CCGGGBTTTEEEEECCC-----CT----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred hHHHHhhCCEEEEeccccccC-ce----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 0000 000 000000001 00 0112459999999888888888999 99999999888 998877777666
Q ss_pred Hh----cCceEEEEecCH--------HHHHhhcCEEEEEeCC
Q 007982 529 NE----WDGGLVLVSHDF--------RLINQVAHEIWVCENQ 558 (582)
Q Consensus 529 ~~----~~~tvi~vsHd~--------~~~~~~~d~i~~l~~G 558 (582)
++ .+.+||++||+. ..+.++||+|++|+..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 54 477999999999 5588999999999743
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=161.99 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=82.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.|++|++++|+||||||||||+++|+|++.|..|.....+ ..-++.... .........+...+.- ..+ .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~----~~~~~~i~~~~~~~~~-~~~---~~ 90 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN----TFRPERIREIAQNRGL-DPD---EV 90 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS----CCCHHHHHHHHHHTTS-CHH---HH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC----CCCHHHHHHHHHHcCC-CHH---HH
Confidence 5899999999999999999999999996655322211111 011111110 0000001111111100 011 22
Q ss_pred HHhcCCCCccccCCCCCCChhHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH------------HHHHHH--
Q 007982 469 IGRFGLTGKAQVMPMKNLSDGQR-SRVVFAWLAYR-------QPHMLLLDEPTNHLDIET------------IDSLAE-- 526 (582)
Q Consensus 469 l~~~gl~~~~~~~~~~~LSgGqk-qrv~lAral~~-------~p~lLlLDEPt~~LD~~~------------~~~l~~-- 526 (582)
++.+.+ ....+.+++ +.+..++.++. +|++|+|||||+++|+.. ...+.+
T Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 222211 112344443 33555555555 999999999999999831 113333
Q ss_pred --HHHhcCceEEEEec----CHHHHHhhcCEEEEEeCC
Q 007982 527 --ALNEWDGGLVLVSH----DFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 527 --~l~~~~~tvi~vsH----d~~~~~~~~d~i~~l~~G 558 (582)
..++.+.|||+||| +-..+..+||+++++++|
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 33445789999999 555599999999999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-18 Score=173.02 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=97.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-CCceeeeeechHHHHHHHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-MSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
.++++++++. .+|+++| +++|++++|+||||||||||+++|+++.+++ .+.+ .+.+... +.+
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I----~~~g~~i------~~~- 67 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI----ITIEDPI------EYV- 67 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE----EEEESSC------CSC-
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE----EEcCCcc------eee-
Confidence 3556677653 5899999 8999999999999999999999999987664 3432 1111110 000
Q ss_pred cccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCC
Q 007982 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230 (582)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~L 230 (582)
.+... .. +.. ..+|+.. ..| |++||+||..+|++|||||||
T Consensus 68 ~~~~~-~~-----------v~q-----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~--- 108 (261)
T 2eyu_A 68 FKHKK-SI-----------VNQ-----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR--- 108 (261)
T ss_dssp CCCSS-SE-----------EEE-----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---
T ss_pred cCCcc-ee-----------eeH-----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---
Confidence 00000 00 000 0233321 222 899999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 231 DLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 231 D~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
|+++...+.+.. ..+.+|++++|+.+ +..+|||+++|..
T Consensus 109 D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 109 DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 999887766654 34789999999988 5678999887753
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-17 Score=157.61 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=81.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCCce-eeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS--DMSSL-EAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEAL 170 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (582)
-|++|++++|+||||||||||+++|++...+ ..+.. ...+.++......... ...+.... .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~--------------i~~~~~~~-~~ 85 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER--------------IREIAQNR-GL 85 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH--------------HHHHHHHT-TS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH--------------HHHHHHHc-CC
Confidence 5889999999999999999999999984332 21111 1122222111000000 00000000 01
Q ss_pred ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHH-HHHHHHHHHhc-------CCCceeecCCCCCCCHH-------H-
Q 007982 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR-MRIALARALFI-------NPTILLLDEPTNHLDLE-------A- 234 (582)
Q Consensus 171 ~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr-qRv~LAraL~~-------~P~lLlLDEPt~~LD~~-------~- 234 (582)
... .+++.+. ....++++++ +.+..+++++. +|++|+|||||++||+. .
T Consensus 86 ~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~ 150 (231)
T 4a74_A 86 DPD-------EVLKHIY--------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAE 150 (231)
T ss_dssp CHH-------HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHH
T ss_pred CHH-------HHhhcEE--------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhH
Confidence 110 1122211 1123344443 33556666655 99999999999999983 1
Q ss_pred ----HHHHHH----HHhhcCcEEEEEec----CHHHHHhhcCeEEEEeCC
Q 007982 235 ----CVWLEE----TLKKFDRILVVISH----SQDFLNGVCTNIIHMQNK 272 (582)
Q Consensus 235 ----~~~l~~----~l~~~~~tviivsH----d~~~~~~~~d~i~~l~~G 272 (582)
...+.+ +.++.+.|||+||| +-..+..+||++++|++|
T Consensus 151 r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 151 RQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 113333 33455889999999 555599999999999875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-19 Score=172.86 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=105.0
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCC---CChHHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYP---GNEEEKMR 466 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 466 (582)
..+|+++||+||||||||||+++|+|++.| .+++++|..........++.++....+. ..+.+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 468999999999999999999999999876 3666776542211122344443322221 12345678
Q ss_pred HHHHhcCCCCccccCCCCCCChhH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHHhc----
Q 007982 467 AAIGRFGLTGKAQVMPMKNLSDGQ----RSRVVFAWLAYRQPHMLLLDEPTNH-------LDIETIDSLAEALNEW---- 531 (582)
Q Consensus 467 ~~l~~~gl~~~~~~~~~~~LSgGq----kqrv~lAral~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~~~---- 531 (582)
++++.+++..... +|+..+|+|+ +||+++|++++.+|.+|++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 8888888876554 4778999996 4788999999999999999999999 9998888888777653
Q ss_pred CceEEEEecCHH
Q 007982 532 DGGLVLVSHDFR 543 (582)
Q Consensus 532 ~~tvi~vsHd~~ 543 (582)
+.|+++++|+..
T Consensus 151 g~t~~~~~~~~~ 162 (211)
T 3asz_A 151 GRSLEGVVAQYL 162 (211)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 678999999853
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=146.72 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=76.4
Q ss_pred hccCCCCChhHHHHHHHHHHHhc----CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEE
Q 007982 194 AKKTRDFSGGWRMRIALARALFI----NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 194 ~~~~~~LSGGqrqRv~LAraL~~----~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~ 267 (582)
.+++..||||||||++||++|+. +|+++||||||++||+.++..+.++|+++ +.++|+|||+... ..+||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~-~~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVM-MANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-HTTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHH-HHhCCEEE
Confidence 45678999999999999999975 46999999999999999999999999876 4689999999765 57899998
Q ss_pred EE--eCCeEEEEcCChhHHH
Q 007982 268 HM--QNKQLKFYTGNFDQYV 285 (582)
Q Consensus 268 ~l--~~G~i~~~~g~~~~~~ 285 (582)
.+ .+|....+..+.+++.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 65 4787666666665543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=144.54 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCCCCCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEE
Q 007982 481 MPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWV 554 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~ 554 (582)
+++..||||||||++||++++. +|+++||||||++||+.+...+.+.|+++ +.++|+|||+...+ .+||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 4568999999999999999974 46999999999999999999999999876 46899999998765 78999986
Q ss_pred E--eCCeEEEEcCCHHHHHHHHHH
Q 007982 555 C--ENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 555 l--~~G~i~~~~g~~~~~~~~~~~ 576 (582)
+ .+|.......+..++.+.+.+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~~~~~ 162 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMKILEE 162 (173)
T ss_dssp EEEETTEEEEEECCHHHHHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHHHHHH
Confidence 5 588776677888887766544
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-17 Score=189.09 Aligned_cols=145 Identities=21% Similarity=0.165 Sum_probs=101.5
Q ss_pred ceEEeeeEEEE---CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCCCceeeeeechHHHHHHHHHHH
Q 007982 72 DIRIESLSVTF---HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-SDMSSLEAVISCDEERLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y---~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~ 147 (582)
.|++++...-+ ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+ +.... .
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vpa~~---------~ 614 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VPAEE---------A 614 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BSSSE---------E
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce---eehhc---------c
Confidence 57777764333 346789999999 99999999999999999999998652 222211 00000 0
Q ss_pred HhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH--hcCCCceeecC
Q 007982 148 ILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL--FINPTILLLDE 225 (582)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL--~~~P~lLlLDE 225 (582)
.++.. + .++..++..+ .....+|+|+++++.+|+++ +.+|+++||||
T Consensus 615 ~i~~v------------------~---------~i~~~~~~~d----~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDE 663 (765)
T 1ewq_A 615 HLPLF------------------D---------GIYTRIGASD----DLAGGKSTFMVEMEEVALILKEATENSLVLLDE 663 (765)
T ss_dssp EECCC------------------S---------EEEEECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred ceeeH------------------H---------HhhccCCHHH----HHHhcccHHHHHHHHHHHHHHhccCCCEEEEEC
Confidence 00000 0 0112233322 12345899999999999999 99999999999
Q ss_pred C---CCCCCHHHH-HHHHHHHhhcCcEEEEEecCHHHHHhhc
Q 007982 226 P---TNHLDLEAC-VWLEETLKKFDRILVVISHSQDFLNGVC 263 (582)
Q Consensus 226 P---t~~LD~~~~-~~l~~~l~~~~~tviivsHd~~~~~~~~ 263 (582)
| |++||+.+. ..+.+.|.+.+.++|++||+.++.. +|
T Consensus 664 pgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 664 VGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9 999999887 4688888877889999999998864 44
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=154.61 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=101.8
Q ss_pred eeeeEeeeE-EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHH
Q 007982 85 HDLIVDSEL-ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV 163 (582)
Q Consensus 85 ~~il~~vsl-~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (582)
...|+++.+ .+++|++++|+||||||||||++.|++...+..+.+. .+........+......+..........
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI-YVTTEESRDSIIRQAKQFNWDFEEYIEK---- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE-EEESSSCHHHHHHHHHHTTCCCGGGBTT----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE-EEEcccCHHHHHHHHHHhcchHHHHhhC----
Confidence 456788887 7999999999999999999999999865443322211 1111111111111111111100000000
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCC--CHHHHHHHH
Q 007982 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHL--DLEACVWLE 239 (582)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~L--D~~~~~~l~ 239 (582)
.+..++. ....++ .. . .....|.++.++...+.+...+|+ +||+||||+.+ |+.....+.
T Consensus 84 --~~~~~~~---------~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 84 --KLIIIDA---------LMKEKE-DQ-W---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp --TEEEEEC---------CC-----CT-T---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred --CEEEEec---------cccccC-ce-e---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 0000000 000000 00 0 123459999999988888888999 99999999888 988777777
Q ss_pred HHHhh----cCcEEEEEecCH--------HHHHhhcCeEEEEeCCe
Q 007982 240 ETLKK----FDRILVVISHSQ--------DFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 240 ~~l~~----~~~tviivsHd~--------~~~~~~~d~i~~l~~G~ 273 (582)
+.|++ .+.|||++||+. ..+..+||+|++|+...
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 76654 478999999999 55899999999998643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-17 Score=157.26 Aligned_cols=162 Identities=18% Similarity=0.179 Sum_probs=96.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEcC------ceeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL-----VPLDGMVRRHN------HLRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~-----~p~~G~i~~~~------~~~~~~ 434 (582)
+|+++|++|.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+ ...+--
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 578999999996 357777 889999999999999999999999999998 78888764321 111100
Q ss_pred echhhhhhcCC------cccHHHHHHh--c-----------CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHH-
Q 007982 435 FHQHLAEKLDM------DMSALQYMIK--E-----------YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR- 493 (582)
Q Consensus 435 ~~q~~~~~~~~------~~~~~~~~~~--~-----------~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr- 493 (582)
.+......... ......++.. . .+.. ....+..++..+++.......++..+|+||+||
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~ 158 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQ 158 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHH
Confidence 00000000000 0000011100 0 0111 223456677778876543234567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
+..+++++.+|.++++|||||++|..++..+.+.|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999988764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-17 Score=163.61 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=84.8
Q ss_pred CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC----CceeeeeechHHHHHHHHHHHHhccccCCCcc
Q 007982 83 HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM----SSLEAVISCDEERLKLEKEAEILGAQEDGGGE 158 (582)
Q Consensus 83 ~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (582)
+++.+|+|+||++++|+++||+||||||||||+++|+++..... ...-+.+..+. . . ....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~---------~----~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--F---------Y----KVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--G---------B----CCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--C---------c----cccC
Confidence 56789999999999999999999999999999999987542100 00000111110 0 0 0000
Q ss_pred hHHHHHHHHH--cCC--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHH
Q 007982 159 QLERVYERLE--ALD--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234 (582)
Q Consensus 159 ~~~~~~~~l~--~~~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~ 234 (582)
..+.+..... .++ .......+.+.|+.+. ....+++..||+||+||+++ ++++.+|+++|||||...+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~- 149 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE- 149 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-
T ss_pred HhHhhhhhccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-
Confidence 0010100000 000 0011123344444331 12356788999999999988 6888999999999999888764
Q ss_pred HHHHHHHHhhcCcEEEEEecCH-HHHHhhcCeEEEEeCC
Q 007982 235 CVWLEETLKKFDRILVVISHSQ-DFLNGVCTNIIHMQNK 272 (582)
Q Consensus 235 ~~~l~~~l~~~~~tviivsHd~-~~~~~~~d~i~~l~~G 272 (582)
+.+ -.+.+|+++||+. .....+++++ ++|
T Consensus 150 ---l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 150 ---IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp ---HHT---TCSEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred ---HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 211 1377999999974 4444555545 555
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-18 Score=176.78 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=74.7
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC-CCCCCcEEEEcC--------ceeEEEechhhh
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD-LVPLDGMVRRHN--------HLRIAQFHQHLA 440 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl-~~p~~G~i~~~~--------~~~~~~~~q~~~ 440 (582)
.||++.|+ ++.++++++|+| +|+||||||||||++.|+|. +.|++| |...+ ...+++..|...
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 47888896 467999999998 99999999999999999998 888888 53221 112344444321
Q ss_pred hhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC-CCHH
Q 007982 441 EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH-LDIE 519 (582)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~-LD~~ 519 (582)
.....++++...........+..+.++.. +.... ...+.++|||||||+.+||+++ +|++||||++ ||+.
T Consensus 74 --~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 74 --VKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHH-HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred --cccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 11222222211110000000111111111 11111 2345789999999999999886 9999999985 9998
Q ss_pred HHHHHHHHHHhcCceEEEEecCHH
Q 007982 520 TIDSLAEALNEWDGGLVLVSHDFR 543 (582)
Q Consensus 520 ~~~~l~~~l~~~~~tvi~vsHd~~ 543 (582)
..+.+.++-...+.++|+++||+.
T Consensus 145 ~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 145 DVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCC
Confidence 863333322223568899999973
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-16 Score=154.25 Aligned_cols=166 Identities=12% Similarity=0.112 Sum_probs=97.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCCCcee--ee---------eec
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE-----ASDMSSLE--AV---------ISC 135 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~-----~~~~~~~~--~~---------i~~ 135 (582)
+|+++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|.|.. .++.+... +. +..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 589999999997 467777 899999999999999999999999999876 33322211 00 000
Q ss_pred hHHH---------HHHHHHHHHhccccCCC-c-chHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH
Q 007982 136 DEER---------LKLEKEAEILGAQEDGG-G-EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204 (582)
Q Consensus 136 ~~~~---------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 204 (582)
.+.. .........+....... . ..... +. .........+.+++...+++......++..+|+||
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d----~~-~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMD----IR-HPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEE----TT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEE----CC-CCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 0000 00000000000000000 0 00000 00 00111223455667777776443456788999999
Q ss_pred HHH-HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 205 RMR-IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 205 rqR-v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
+|| +..+++++.+|.++++|||||++|..++..+.+.|.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 999 89999999999999999999999999999999988764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-18 Score=163.51 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=91.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee-eeechHHHHHHHHHHHHhcc--ccCCCcchHHHHHHHHHcCChhH
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA-VISCDEERLKLEKEAEILGA--QEDGGGEQLERVYERLEALDAST 174 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 174 (582)
|++++|+||||||||||+++|+++.. +.| +.. ..... ... .....+++ +......
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~--~~~--~~~~~ig~~~~~~~g~~---------------- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE--EVR--QGGRRIGFDVVTLSGTR---------------- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC--EEE--TTSSEEEEEEEETTSCE----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc--hhH--hhhceEEEEEEecccce----------------
Confidence 78999999999999999999998876 444 211 11110 000 00001111 0000000
Q ss_pred HHHHHHHHHHhCCCCh------hhhhccCCCCChhHHHHH-HHHH---HHhcCCCceeecC--CCCCCCHHHHHHHHHHH
Q 007982 175 AEKRAAEILYGLGFNK------TMQAKKTRDFSGGWRMRI-ALAR---ALFINPTILLLDE--PTNHLDLEACVWLEETL 242 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~------~~~~~~~~~LSGGqrqRv-~LAr---aL~~~P~lLlLDE--Pt~~LD~~~~~~l~~~l 242 (582)
..+..+++.. ....++...+|+|||+++ +|++ |++.+|++||||| ||+.+|+...+.|.+++
T Consensus 59 ------~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 59 ------GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ------EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ------ehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 0112222221 123455667999999998 4455 6899999999999 99999999999999999
Q ss_pred hhcCcEEE---EEecCH--HHHHhhcCeEEEEeCCeEEE
Q 007982 243 KKFDRILV---VISHSQ--DFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 243 ~~~~~tvi---ivsHd~--~~~~~~~d~i~~l~~G~i~~ 276 (582)
+.+..+|| .||||. .|++++| .+.+|+|..
T Consensus 133 ~~~~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~ 167 (189)
T 2i3b_A 133 STPGTIILGTIPVPKGKPLALVEEIR----NRKDVKVFN 167 (189)
T ss_dssp HCSSCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEE
T ss_pred hCCCcEEEEEeecCCCCchHHHHHHe----ecCCcEEEE
Confidence 87654442 456987 5555554 456677654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-17 Score=183.43 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=93.0
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcC
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEY 457 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 457 (582)
+..+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........++++.+.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i------------------- 653 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI------------------- 653 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-------------------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH-------------------
Confidence 35689999999 9999999999999999999999999743 22332111111122222221
Q ss_pred CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHHh-cC
Q 007982 458 PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS----LAEALNE-WD 532 (582)
Q Consensus 458 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~----l~~~l~~-~~ 532 (582)
+.+++..+... ...+++|+++++ ++.+...+.+|++|||||||+|+|+..... +.+.+.+ .+
T Consensus 654 -----------~~~~~~~d~l~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g 720 (800)
T 1wb9_A 654 -----------FTRVGAADDLA-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK 720 (800)
T ss_dssp -----------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC
T ss_pred -----------HhhCCHHHHHH-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC
Confidence 11122211111 123467777664 555555689999999999988888755443 3444444 47
Q ss_pred ceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 533 GGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 533 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
.++|++|||.+++ .+||++..+.++++
T Consensus 721 ~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 721 ALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp CEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred CeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 8999999999876 58887655555544
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-18 Score=175.44 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=72.5
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC-CCCCCCceeeeeechHHHHHHHHHHHHhcc--c
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI-EASDMSSLEAVISCDEERLKLEKEAEILGA--Q 152 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~ 152 (582)
.||+++|+++.++++++|+| +||||||||||||+++|.+. ..++.+ + ...+...........+.. +
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i----~~~g~~~~~t~~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-I----SGAAEKIERTVQIEASTVEIE 70 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-c----ccCCcccCCcceEeeEEEEec
Confidence 58999999999999999998 99999999999999999876 444332 1 111111000000111111 1
Q ss_pred cCCC---cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCC
Q 007982 153 EDGG---GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229 (582)
Q Consensus 153 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~ 229 (582)
.... ...++...... .... .++...+...+ ....++++.++|||||||+.+|||++ +|++||||++
T Consensus 71 ~~~~~~~ltv~Dt~g~~~-~~~~---~e~~~~l~~~l---~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGD-AINC---RDCFKTIISYI---DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp ---CCEEEEEEEEC---------------CTTHHHHH---HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred CCCcccCcchhhhhhhhh-hcCc---HHHHHHHHHHH---HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 1000 00000000000 0000 00001111111 11234678899999999999999986 9999999985
Q ss_pred -CCHHHHHHHHHHHhhcCcEEEEEecCHH
Q 007982 230 -LDLEACVWLEETLKKFDRILVVISHSQD 257 (582)
Q Consensus 230 -LD~~~~~~l~~~l~~~~~tviivsHd~~ 257 (582)
||+...+.+.++-.+.+.++|+++||+.
T Consensus 140 ~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 9998864433332223568889999963
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-17 Score=169.23 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=94.8
Q ss_pred EEEEEEecC-CceeeEeeeE-------EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEcCceeEEEechhhh
Q 007982 370 VEVTFGYTP-DNLIYKNLDF-------GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQFHQHLA 440 (582)
Q Consensus 370 ~~l~~~y~~-~~~~l~~vsl-------~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~~~~~~~~~~q~~~ 440 (582)
.+++++|.+ ..+.|+++.+ .+.+|++++|+|||||||||||++|+|++.|+ .|.|..... .+.+.....
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed-~~e~~~~~~- 169 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED-PIEFVHESK- 169 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCS-
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC-cHHhhhhcc-
Confidence 355555532 2344555554 67888899999999999999999999999987 566542111 000000000
Q ss_pred hhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 441 EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
. ..+... . .....++..+ +||++|.++|++||+|||| |.++
T Consensus 170 ------------------~------------~~v~q~-~-~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 170 ------------------K------------CLVNQR-E-VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------S------------SEEEEE-E-BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------c------------cceeee-e-eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 0 000000 0 0001223322 9999999999999999999 8888
Q ss_pred HHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEe
Q 007982 521 IDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 521 ~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
...+.++.. .|.+||+++|+.+.+ ..|||+++|.
T Consensus 211 ~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 211 IRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 777666644 478999999999988 7889887764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-18 Score=171.95 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=78.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc--ccCC---CcchHHHHHHHHHcCChhH
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA--QEDG---GGEQLERVYERLEALDAST 174 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~ 174 (582)
.++|+||||||||||+|+|+|+..++.|.+ .+.+...........++. +... .....+++... .......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i----~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS----WNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc----ccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcccHH
Confidence 489999999999999999999887765432 111111000000000000 0000 00000000000 0000011
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEec
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISH 254 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsH 254 (582)
..+.+.+.+. ....+..+.+|||||||||++|||++. +++|||||.+||+.....+ ..|.+. .++|+|.|
T Consensus 79 ~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l-~~L~~~-~~vI~Vi~ 148 (270)
T 3sop_A 79 CWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFM-KHLSKV-VNIIPVIA 148 (270)
T ss_dssp CSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHH-HHHHTT-SEEEEEET
T ss_pred HHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHH-HHHHhc-CcEEEEEe
Confidence 1112233332 223456778999999999999999886 9999999999999885544 445554 78888888
Q ss_pred CHHH
Q 007982 255 SQDF 258 (582)
Q Consensus 255 d~~~ 258 (582)
..+.
T Consensus 149 K~D~ 152 (270)
T 3sop_A 149 KADT 152 (270)
T ss_dssp TGGG
T ss_pred cccc
Confidence 7654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=152.08 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=92.2
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC----ceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN----HLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~----~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
.+.+|++++|+||||||||||++.|++.+. .|.+.... ...+.|+...-. . ......+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhh
Confidence 378999999999999999999999998654 34331100 112444432210 0 001111111001122344
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHH----hcCceE
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN--HLDIETI---DSLAEALN----EWDGGL 535 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~--~LD~~~~---~~l~~~l~----~~~~tv 535 (582)
...+++.+++.... ..++..||+||.+++ ++++.+|++|||||||+ ++|.... ..+.+.|. +.+.||
T Consensus 99 ~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 56678888886654 346689999998765 67888999999999999 9997433 44544443 457899
Q ss_pred EEEecCHHHHH
Q 007982 536 VLVSHDFRLIN 546 (582)
Q Consensus 536 i~vsHd~~~~~ 546 (582)
|++||+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999988763
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=151.34 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=85.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCC----------CCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASD----------MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVY 164 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (582)
|++|++++|+||||||||||++.|++..... .+.. ..+........+....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v-~~~~~e~~~~~~~~r~------------------ 87 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPV-IYLPAEDPPTAIHHRL------------------ 87 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCE-EEEESSSCHHHHHHHH------------------
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccE-EEEECCCCHHHHHHHH------------------
Confidence 7899999999999999999999998533221 0100 0111110000000000
Q ss_pred HHHH-cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC--CCCHHHH---HHH
Q 007982 165 ERLE-ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN--HLDLEAC---VWL 238 (582)
Q Consensus 165 ~~l~-~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~--~LD~~~~---~~l 238 (582)
..+. .+. .....++++.+++.+ ..++++..||+||.|++ ++++.+|++||+||||+ ++|.... ..+
T Consensus 88 ~~~g~~~~----~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 88 HALGAHLS----AEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp HHHHTTSC----HHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred HHHHhhcC----hhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 0111 011 122455667777754 35678999999997765 68888999999999999 9997433 455
Q ss_pred HHHH----hhcCcEEEEEecCHHHHH
Q 007982 239 EETL----KKFDRILVVISHSQDFLN 260 (582)
Q Consensus 239 ~~~l----~~~~~tviivsHd~~~~~ 260 (582)
++.| ++.+.|||+++|+.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCccc
Confidence 5544 345789999999987653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=166.09 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=70.4
Q ss_pred ccCCCC-ChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEE
Q 007982 195 KKTRDF-SGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHM 269 (582)
Q Consensus 195 ~~~~~L-SGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l 269 (582)
+++..| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.+.|+++ +.|||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999998776 679999999999876 69999999
Q ss_pred eCC
Q 007982 270 QNK 272 (582)
Q Consensus 270 ~~G 272 (582)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=143.26 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=92.5
Q ss_pred eeEeeeE-EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCC
Q 007982 382 IYKNLDF-GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN 460 (582)
Q Consensus 382 ~l~~vsl-~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 460 (582)
.|+.+.. .|.+|++++|+||||||||||++.|++ . ..+.+. |+.... .. +
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~--------~i~~~~--~~----~------------ 58 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVA--------YVDTEG--GF----S------------ 58 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEE--------EEESSC--CC----C------------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEE--------EEECCC--CC----C------------
Confidence 4555544 588999999999999999999999999 2 222222 221110 00 0
Q ss_pred hHHHHHHHHHhcCCCCc--cccCCCCCCChhH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--------HHHH---
Q 007982 461 EEEKMRAAIGRFGLTGK--AQVMPMKNLSDGQ--RSRVVFAWLAYRQ-PHMLLLDEPTNHLDIET--------IDSL--- 524 (582)
Q Consensus 461 ~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGq--kqrv~lAral~~~-p~lLlLDEPt~~LD~~~--------~~~l--- 524 (582)
..++.+.+..+++... .....+..+|+++ ++++..+++++.+ |++||+||||+.+|+.. ...+
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (220)
T 2cvh_A 59 -PERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV 137 (220)
T ss_dssp -HHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH
Confidence 0111122222222100 0001123455554 5678888899886 99999999999999732 1223
Q ss_pred -HHHHHhcCceEEEEecCHH-------------HHHhhcCEEEEEeCC
Q 007982 525 -AEALNEWDGGLVLVSHDFR-------------LINQVAHEIWVCENQ 558 (582)
Q Consensus 525 -~~~l~~~~~tvi~vsHd~~-------------~~~~~~d~i~~l~~G 558 (582)
.++.++.+.+||+++|... .+.++||+|++|+..
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2333445789999999865 677899999999743
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-16 Score=160.87 Aligned_cols=139 Identities=15% Similarity=0.041 Sum_probs=85.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------------eEEEechhhhhhcCCcccHHHHHH
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------------RIAQFHQHLAEKLDMDMSALQYMI 454 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~~~~ 454 (582)
+|++++|+||||||||||+++|+|+++|++|+|...+.. .+++++|... ..+..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 689999999999999999999999999999999875421 2344444321 122223333322
Q ss_pred hcCCCChHHHH-HHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 455 KEYPGNEEEKM-RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 455 ~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
... .... ..+++..|+.+... ..++..++||++|||+++.+|+ +|.|| |+++.+.. ..+...-+..
T Consensus 179 ~~~----~~~~d~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMK----ARGYDLLFVDTAGRLHTKH----NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAV 247 (304)
T ss_dssp HHH----HHTCSEEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHH
T ss_pred HHH----hCCCCEEEecCCCCCCchH----HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHc
Confidence 100 0000 00122334322111 2245556899999999999999 67777 66665432 2333333445
Q ss_pred CceEEEEecCHH
Q 007982 532 DGGLVLVSHDFR 543 (582)
Q Consensus 532 ~~tvi~vsHd~~ 543 (582)
+.|+|++||+..
T Consensus 248 ~~t~iivTh~d~ 259 (304)
T 1rj9_A 248 GLTGVIVTKLDG 259 (304)
T ss_dssp CCSEEEEECTTS
T ss_pred CCcEEEEECCcc
Confidence 789999999844
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-17 Score=161.15 Aligned_cols=144 Identities=17% Similarity=0.086 Sum_probs=93.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDAST 174 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (582)
.++|+++||+||||||||||+++|+++..+.. +.+..+... . ..............+ ..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i----~~v~~d~~~-----------~-~~~~~~~~~~~~~~~-~~~~~~ 65 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERV----ALLPMDHYY-----------K-DLGHLPLEERLRVNY-DHPDAF 65 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGE----EEEEGGGCB-----------C-CCTTSCHHHHHHSCT-TSGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecCccc-----------c-CcccccHHHhcCCCC-CChhhh
Confidence 46899999999999999999999998754311 111111100 0 000000000000000 001111
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHH----HHHHHHHHHhcCCCceeecCCCCC-------CCHHHHHHHHHHHh
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWR----MRIALARALFINPTILLLDEPTNH-------LDLEACVWLEETLK 243 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr----qRv~LAraL~~~P~lLlLDEPt~~-------LD~~~~~~l~~~l~ 243 (582)
...++.++++.+++... .++++.++|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+.
T Consensus 66 ~~~~~~~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~ 144 (211)
T 3asz_A 66 DLALYLEHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLK 144 (211)
T ss_dssp CHHHHHHHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHH
Confidence 12345566666666543 4568899999974 788999999999999999999999 99988888888775
Q ss_pred hc----CcEEEEEecCH
Q 007982 244 KF----DRILVVISHSQ 256 (582)
Q Consensus 244 ~~----~~tviivsHd~ 256 (582)
+. +.|+++++|+.
T Consensus 145 r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 145 RDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHSCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 53 77999999984
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-16 Score=175.22 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=95.7
Q ss_pred ceEEeeeEEEE-----CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CCCceeeeeechHHHHHHHHH
Q 007982 72 DIRIESLSVTF-----HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-DMSSLEAVISCDEERLKLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y-----~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 145 (582)
.|.+++...-. +++.+++|++|+ ++|++++|+||||||||||||+|+|+... ..+.. +....
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~---vpa~~-------- 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY---VPAQK-------- 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC---BSSSE--------
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc---cchhc--------
Confidence 46666543211 456799999999 99999999999999999999999875321 11100 00000
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
..+...+ .++..++..+. .....+.+|+++++ ++.+..++.+|++|||||
T Consensus 645 -~~i~~~~---------------------------~i~~~~~~~d~-l~~~~stf~~e~~~-~~~il~~a~~psLlLLDE 694 (800)
T 1wb9_A 645 -VEIGPID---------------------------RIFTRVGAADD-LASGRSTFMVEMTE-TANILHNATEYSLVLMDE 694 (800)
T ss_dssp -EEECCCC---------------------------EEEEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEES
T ss_pred -ccceeHH---------------------------HHHhhCCHHHH-HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEEC
Confidence 0000000 00111222111 11234567777765 444455689999999999
Q ss_pred CCCCCCHHHHH----HHHHHHhh-cCcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 226 PTNHLDLEACV----WLEETLKK-FDRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 226 Pt~~LD~~~~~----~l~~~l~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
||+|+|+.... .+.+.+.+ .+.++|++||+.++. .+||++..+.++++
T Consensus 695 p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 695 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 98888875443 34445555 478999999999875 48988766655554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-15 Score=142.26 Aligned_cols=149 Identities=19% Similarity=0.093 Sum_probs=91.4
Q ss_pred eeEeeeE-EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 87 LIVDSEL-ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 87 il~~vsl-~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
.|+.+.. .|++|++++|+||||||||||++.|++ ..... .+.++... ... ...+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~----v~~i~~~~--------------~~~---~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK----VAYVDTEG--------------GFS---PERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE----EEEEESSC--------------CCC---HHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc----EEEEECCC--------------CCC---HHHHHH
Confidence 4555544 588999999999999999999999988 22211 11111100 000 000000
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH--HHHHHHHHHHhcC-CCceeecCCCCCCCHHH--------
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW--RMRIALARALFIN-PTILLLDEPTNHLDLEA-------- 234 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq--rqRv~LAraL~~~-P~lLlLDEPt~~LD~~~-------- 234 (582)
........ ..++++. -.+..+|+++ +++++.+++++.+ |++||+||||+.+|+..
T Consensus 65 ~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 65 MAETRGLN-----PEEALSR---------FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp HHHTTTCC-----HHHHHHH---------EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred HHHhcCCC-----hHHHhhc---------EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 00000000 0011111 1234556665 5688888899986 99999999999999732
Q ss_pred HHHH----HHHHhhcCcEEEEEecCHH-------------HHHhhcCeEEEEeCC
Q 007982 235 CVWL----EETLKKFDRILVVISHSQD-------------FLNGVCTNIIHMQNK 272 (582)
Q Consensus 235 ~~~l----~~~l~~~~~tviivsHd~~-------------~~~~~~d~i~~l~~G 272 (582)
...+ .++.++++.|+|+++|... .+..+||++++|+..
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 1223 3333455889999999865 678899999999854
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-16 Score=167.22 Aligned_cols=159 Identities=11% Similarity=0.088 Sum_probs=89.0
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE--EEEc--C---ceeEEEech
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM--VRRH--N---HLRIAQFHQ 437 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~--i~~~--~---~~~~~~~~q 437 (582)
.+|.++|+++.|++ +.++++++|+| +|+|+||||||||+++|+|+..|..|. +... . ...++++.|
T Consensus 10 ~~l~~~~l~~~y~~-~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTTT-TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeECC-EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 56899999999964 67999999998 999999999999999999998765441 1110 0 112445544
Q ss_pred hhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC---EEEEeCCC-
Q 007982 438 HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPT- 513 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEPt- 513 (582)
... +....++++.............++.+.+.+ . ..++.+++||++|||+++.+|+ +|++||||
T Consensus 83 ~~~--~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i------~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 83 EGG--VQLLLTIVDTPGFGDAVDNSNCWQPVIDYI------D----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHHH------H----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred cCC--cccceeeeechhhhhhccchhhHHHHHHHH------H----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 321 112223322221110000001111111111 0 1355677789999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 007982 514 NHLDIETIDSLAEALNEWDGGLVLVSHDFRL 544 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 544 (582)
++||+..... .+.|.. +..||+|.|-.+.
T Consensus 151 ~~L~~~d~~~-lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 151 HGLKPLDIEF-MKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CSCCHHHHHH-HHHHTT-TSEEEEEEESTTS
T ss_pred cCCCHHHHHH-HHHHhc-cCcEEEEEEcccC
Confidence 6999887533 344443 5677777776553
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-16 Score=175.97 Aligned_cols=171 Identities=15% Similarity=0.262 Sum_probs=89.6
Q ss_pred CCeEEEEEEEEEecCC-ceeeEee----------eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEcCce-
Q 007982 364 PPVLQFVEVTFGYTPD-NLIYKNL----------DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVRRHNHL- 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~-~~~l~~v----------sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~~~~~~- 430 (582)
++.+.++|+++.|+.. +++++.+ +|+++. +||+|||||||||||++|+|++.| ++|.|++.+..
T Consensus 8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 8 PGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 3468899999999632 2344433 355543 999999999999999999999989 79998765421
Q ss_pred -------------eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHH
Q 007982 431 -------------RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 431 -------------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 497 (582)
.++|++|... +....++.+++ ......++.... .+| ++++.++
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i------------~~~~~~~~~~~~-------~~s---~~~i~l~ 140 (608)
T 3szr_A 85 KLKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEI------------NKAQNAIAGEGM-------GIS---HELITLE 140 (608)
T ss_dssp EEEECSSSSCCEEEESCC---CC--CCCHHHHHTTH------------HHHHHHHHCSSS-------CCC---SCCEEEE
T ss_pred EEecCCccccceeEEeeeccccc--CCCHHHHHHHH------------HHHHHHhcCCcc-------ccc---hHHHHHH
Confidence 2344444321 11122222221 112222221110 011 1122233
Q ss_pred HHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHH--------Hhh----cCEEEE
Q 007982 498 WLAYRQPHMLLLDEP------TNHLDIETIDSLAEALNEW-----DGGLVLVSHDFRLI--------NQV----AHEIWV 554 (582)
Q Consensus 498 ral~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~~--------~~~----~d~i~~ 554 (582)
.+....|+++|+||| |++||+.....+.+++.++ +.+++++|||++.+ ..+ +..|+|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 333458999999999 9999999999999998885 34688999997633 332 245777
Q ss_pred EeCCeEE
Q 007982 555 CENQAVT 561 (582)
Q Consensus 555 l~~G~i~ 561 (582)
+.++.++
T Consensus 221 lTK~Dlv 227 (608)
T 3szr_A 221 LTKPDLV 227 (608)
T ss_dssp EECGGGS
T ss_pred ecchhhc
Confidence 7766543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-16 Score=162.78 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred eeeEEEECC--eeeeEeeeE-------EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-CCceeeeeechHHHHHHHHH
Q 007982 76 ESLSVTFHG--HDLIVDSEL-------ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-MSSLEAVISCDEERLKLEKE 145 (582)
Q Consensus 76 ~nls~~y~~--~~il~~vsl-------~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 145 (582)
.+++++|.. ...|+++.+ .+.+|++++|+||||||||||+++|+++.+++ .+.+ +.... ..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i---~t~ed-~~----- 162 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI---LTIED-PI----- 162 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE---EEEES-SC-----
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE---EEccC-cH-----
Confidence 456666632 344566655 67789999999999999999999999877654 2221 11100 00
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
.+....... .+... ......++-.+ +||+||..+|++||+||
T Consensus 163 ----e~~~~~~~~----------------------------~v~q~--~~~~~~~~~~~----~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 163 ----EFVHESKKC----------------------------LVNQR--EVHRDTLGFSE----ALRSALREDPDIILVGE 204 (356)
T ss_dssp ----CSCCCCSSS----------------------------EEEEE--EBTTTBSCHHH----HHHHHTTSCCSEEEESC
T ss_pred ----Hhhhhcccc----------------------------ceeee--eeccccCCHHH----HHHHHhhhCcCEEecCC
Confidence 000000000 00000 00001122222 99999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 226 PTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
|| |.++...+.+... .|.++|+++|+.+.+ ..|||++.|..
T Consensus 205 p~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 205 MR---DLETIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp CC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred CC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 99 8888777666543 488999999999988 78999988844
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-15 Score=157.69 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=88.3
Q ss_pred eeEee-eEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CCCC----cE-EEEcCceeEEEechhhhhhcCCcccHHHHH
Q 007982 382 IYKNL-DFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VPLD----GM-VRRHNHLRIAQFHQHLAEKLDMDMSALQYM 453 (582)
Q Consensus 382 ~l~~v-sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p~~----G~-i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 453 (582)
.|+.+ ++.|.+|++++|+||||||||||++.|++.. +|++ |. |...+... +.++. ..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~~~~~-----------i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FRPER-----------IREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--CCHHH-----------HHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--CCHHH-----------HHHH
Confidence 34444 6789999999999999999999999999998 6666 45 44433210 00000 0111
Q ss_pred HhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------
Q 007982 454 IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY-------RQPHMLLLDEPTNHLDIET------ 520 (582)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-------~~p~lLlLDEPt~~LD~~~------ 520 (582)
...+. .... .+++.+-+. .. .-|++++|++.++++++ .+|++||+||||+++|+..
T Consensus 186 ~q~~~-~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~ 254 (349)
T 1pzn_A 186 AQNRG-LDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 254 (349)
T ss_dssp HHTTT-CCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred HHHcC-CCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence 11111 1111 222222110 11 12678999999999998 6899999999999999852
Q ss_pred ------HHHHHHHH----HhcCceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 521 ------IDSLAEAL----NEWDGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 521 ------~~~l~~~l----~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
...+...| ++++.|||+++|+.......++...+...|+
T Consensus 255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH 303 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence 23333333 3457899999999876544333334444444
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=146.96 Aligned_cols=75 Identities=32% Similarity=0.494 Sum_probs=68.1
Q ss_pred ccCCCCChhHHHHH------HHHHHHhcC-CCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHHHhhcCe
Q 007982 195 KKTRDFSGGWRMRI------ALARALFIN-PTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFLNGVCTN 265 (582)
Q Consensus 195 ~~~~~LSGGqrqRv------~LAraL~~~-P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~~~~~d~ 265 (582)
+++..|||||+||| ++|++|+.+ |++|||||||++||+..+..+.+.|.++. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567999999 99999999999999999999999998863 58999999987 5789999
Q ss_pred EEEEe
Q 007982 266 IIHMQ 270 (582)
Q Consensus 266 i~~l~ 270 (582)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-15 Score=157.10 Aligned_cols=126 Identities=18% Similarity=0.149 Sum_probs=86.2
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN 460 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 460 (582)
+|++++ +.+|++++|+||||||||||+++|+|++.|+ +|.|...+.. +.+.. ..... ..+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~~~---~~~~~-----------~v~Q- 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVF---KHKKS-----------IVNQ- 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCSCC---CCSSS-----------EEEE-
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhhhh---ccCce-----------EEEe-
Confidence 566665 7899999999999999999999999999997 8998643211 00000 00000 0000
Q ss_pred hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q 007982 461 EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSH 540 (582)
Q Consensus 461 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 540 (582)
..+|+. + ..| +.+|+++|..+|++|++|||| |+++...+.+.. ..+.+|+.++|
T Consensus 189 ---------~~~g~~------~-~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H 242 (372)
T 2ewv_A 189 ---------REVGED------T-KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLH 242 (372)
T ss_dssp ---------EEBTTT------B-SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCC
T ss_pred ---------eecCCC------H-HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEEC
Confidence 013332 1 245 469999999999999999999 888766555544 34678999999
Q ss_pred CHHHHHhhcCEE
Q 007982 541 DFRLINQVAHEI 552 (582)
Q Consensus 541 d~~~~~~~~d~i 552 (582)
+.+ +..+|||+
T Consensus 243 ~~~-~~~~~~rl 253 (372)
T 2ewv_A 243 TNT-AIDTIHRI 253 (372)
T ss_dssp CCS-HHHHHHHH
T ss_pred cch-HHHHHHHH
Confidence 966 55666665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-14 Score=149.97 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=86.1
Q ss_pred eeeEee-eEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeee-eechHHHHHHHHHHHHhccccCCCcchHH
Q 007982 86 DLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAV-ISCDEERLKLEKEAEILGAQEDGGGEQLE 161 (582)
Q Consensus 86 ~il~~v-sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (582)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +++.+...+. +.++............+.. ..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q-~~------- 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ-NR------- 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH-TT-------
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHH-Hc-------
Confidence 446655 6899999999999999999999999999765 4433211111 2322211100000000000 00
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh-------cCCCceeecCCCCCCCHHH
Q 007982 162 RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF-------INPTILLLDEPTNHLDLEA 234 (582)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-------~~P~lLlLDEPt~~LD~~~ 234 (582)
.++.. .+++.+-+. .. .-|.+++|++.++++++ .+|++||+||||++||+..
T Consensus 190 -------~~~~~-------~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~ 248 (349)
T 1pzn_A 190 -------GLDPD-------EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY 248 (349)
T ss_dssp -------TCCHH-------HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHC
T ss_pred -------CCCHH-------HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhh
Confidence 01100 111111110 00 12577888888888888 6899999999999999852
Q ss_pred ------------HHHHHHHH----hhcCcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 235 ------------CVWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 235 ------------~~~l~~~l----~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
...+...| ++++.|||+++|........++.......|++
T Consensus 249 ~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 249 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 23333333 34578999999997765544444455555554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-15 Score=142.97 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=88.4
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCce-------eEEEechhhhhhcCCcccHHHHHHhcC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNHL-------RIAQFHQHLAEKLDMDMSALQYMIKEY 457 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~~-------~~~~~~q~~~~~~~~~~~~~~~~~~~~ 457 (582)
.-..++|++++|+||||||||||+++|+|+++| ..|.|...+.. .++|++|...
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~----------------- 72 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD----------------- 72 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH-----------------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH-----------------
Confidence 345789999999999999999999999999986 67777654321 1223332211
Q ss_pred CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEE
Q 007982 458 PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVL 537 (582)
Q Consensus 458 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~ 537 (582)
........-.+..... . ...+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.+|++
T Consensus 73 ------~f~~~~~~~~f~E~~~-~-~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i 135 (219)
T 1s96_A 73 ------EFKEMISRDAFLEHAE-V-FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI 135 (219)
T ss_dssp ------HHHHHHHTTCEEEEEE-E-TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred ------HHHHHHhcCHHHHHHH-H-HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence 0111110000000000 0 00111111222 34455678999999 99999999999887 3679999
Q ss_pred EecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 538 VSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 538 vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
+|||++.+.+ |+ +..| .++.+++...+.+
T Consensus 136 ~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 136 LPPSKIELDR---RL--RGRG-----QDSEEVIAKRMAQ 164 (219)
T ss_dssp ECSSHHHHHH---HH--HTTS-----CSCHHHHHHHHHH
T ss_pred ECCCHHHHHH---HH--HHcC-----CCCHHHHHHHHHH
Confidence 9999998865 32 5555 5677777766554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=144.37 Aligned_cols=75 Identities=27% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCCCCCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhcCE
Q 007982 481 MPMKNLSDGQRSRV------VFAWLAYRQ-PHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 481 ~~~~~LSgGqkqrv------~lAral~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~~~~~d~ 551 (582)
.|+..|||||+||| ++|++++.+ |++|||||||++||+..+..+.+.|.++. .+||+||||++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46679999999988 557888999 99999999999999999999999998863 58999999987 5689999
Q ss_pred EEEEe
Q 007982 552 IWVCE 556 (582)
Q Consensus 552 i~~l~ 556 (582)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-15 Score=157.32 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=85.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
+|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...+..+. +.+....... . ....+..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~--~~~~~~~~~t-~--~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY--PGPSHRIKKT-V--QVEQSKV 79 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC--CSCC-----C-C--EEEEEEC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC--CCcccCCccc-e--eeeeEEE
Confidence 689999999999999999999998 999999999999999999876532211 0000000000 0 0000000
Q ss_pred --ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC---ceee
Q 007982 152 --QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT---ILLL 223 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~---lLlL 223 (582)
+... ....++++..... .........+.+.+. ..++.+++||++|||+++.+|+ +|++
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp C------CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred EEecCCcccceeeeechhhhhh-ccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 0000 0000000000000 000000011111111 1355677889999999999999 9999
Q ss_pred cCCC-CCCCHHHHHHHHHHHhhcCcEEEEEecCHHH
Q 007982 224 DEPT-NHLDLEACVWLEETLKKFDRILVVISHSQDF 258 (582)
Q Consensus 224 DEPt-~~LD~~~~~~l~~~l~~~~~tviivsHd~~~ 258 (582)
|||| ++||+....++.. |.. +.++|+|.|..|.
T Consensus 146 dePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 146 IAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred ecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 9999 6999988655544 443 6778888776553
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-15 Score=155.21 Aligned_cols=171 Identities=16% Similarity=0.163 Sum_probs=108.4
Q ss_pred EEEEEEEE---ecC-Cceee---------EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEE
Q 007982 368 QFVEVTFG---YTP-DNLIY---------KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQ 434 (582)
Q Consensus 368 ~~~~l~~~---y~~-~~~~l---------~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~ 434 (582)
++++++|+ |++ +..+| +++||.|.+|++++|+||||||||||+++|+|+++|++|.|...+...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~- 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF- 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC-
Confidence 67788887 742 12344 89999999999999999999999999999999999999999886531110
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
...+ ..... ..+. + .+...++++..++..|+.++..+|+.+++|||+.
T Consensus 216 ~~~~-~~~v~----------~v~~--------------------q-~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 216 LPDH-PNHVH----------LFYP--------------------S-EAKEEENAPVTAATLLRSCLRMKPTRILLAELRG 263 (361)
T ss_dssp CTTC-SSEEE----------EECC-------------------------------CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred cccc-CCEEE----------Eeec--------------------C-ccccccccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence 0000 00000 0000 0 0000124555688999999999999999999986
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
.+..+ +.+.+..-..|++.++|+.. +...++|+..+..+.......++......+.+
T Consensus 264 ---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~ 320 (361)
T 2gza_A 264 ---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRLLYL 320 (361)
T ss_dssp ---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHH
T ss_pred ---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 22222 33333332347889999965 66788888877665421113444555555544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=130.08 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=77.5
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC--CCCC-----CCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG--DLVP-----LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G--l~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
.|.+|++++|+||||||||||++.|++ +++| ..|.+....... + .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------~--~--------------- 71 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------F--R--------------- 71 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------C--C---------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------c--C---------------
Confidence 488999999999999999999999999 5655 233333322100 0 0
Q ss_pred HHHHHHHHHhcCCCC-----ccccCCCCCCChhHHHHH-HHHHHHc--cCCCEEEEeCCCCCCCHH-------H-----H
Q 007982 462 EEKMRAAIGRFGLTG-----KAQVMPMKNLSDGQRSRV-VFAWLAY--RQPHMLLLDEPTNHLDIE-------T-----I 521 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~-----~~~~~~~~~LSgGqkqrv-~lAral~--~~p~lLlLDEPt~~LD~~-------~-----~ 521 (582)
..++.+.+..+|+.. ... .....+..+...+ .-+..++ .+|++|++||||+.+|+. + .
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~ 149 (243)
T 1n0w_A 72 PERLLAVAERYGLSGSDVLDNVA--YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHL 149 (243)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEE--EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhCeE--EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHH
Confidence 001111112222211 000 0123455554332 2233333 589999999999999975 2 2
Q ss_pred HHHHHHH----HhcCceEEEEecCHHHHHh-------------------hcCEEEEEeCC
Q 007982 522 DSLAEAL----NEWDGGLVLVSHDFRLINQ-------------------VAHEIWVCENQ 558 (582)
Q Consensus 522 ~~l~~~l----~~~~~tvi~vsHd~~~~~~-------------------~~d~i~~l~~G 558 (582)
..+...| ++.+.|||+++|....... +||.+++|+.+
T Consensus 150 ~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 150 ARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2333333 3457899999997665433 89999999854
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=139.83 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechH------HHHHHHHHHHHhccccCCC-cchHHHHHHHHHc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE------ERLKLEKEAEILGAQEDGG-GEQLERVYERLEA 169 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 169 (582)
+|++++|+||||||||||+++|+++..++.+.+.. ...+. ...........+.+..+.. ......+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l-~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF-CAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE-ECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE-EeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999988877654321 11111 1111111111222211111 1111122222210
Q ss_pred CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHHHHHHhhcCc
Q 007982 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWLEETLKKFDR 247 (582)
Q Consensus 170 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 247 (582)
......-..+++..|..+. ..+. ++...+||++||||++.+|+ +|.|| |+++.+.. ..+.++-+..+.
T Consensus 180 ---~~~~~~d~~llDt~G~~~~-~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~~~ 249 (304)
T 1rj9_A 180 ---MKARGYDLLFVDTAGRLHT-KHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAVGL 249 (304)
T ss_dssp ---HHHHTCSEEEECCCCCCTT-CHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHHCC
T ss_pred ---HHhCCCCEEEecCCCCCCc-hHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHcCC
Confidence 0000000012233444321 1223 34455899999999999999 67777 66665432 333444445588
Q ss_pred EEEEEecCH
Q 007982 248 ILVVISHSQ 256 (582)
Q Consensus 248 tviivsHd~ 256 (582)
|+|++||+.
T Consensus 250 t~iivTh~d 258 (304)
T 1rj9_A 250 TGVIVTKLD 258 (304)
T ss_dssp SEEEEECTT
T ss_pred cEEEEECCc
Confidence 999999983
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-13 Score=143.52 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=66.8
Q ss_pred ccCCCCChhHHHHHHHHHHHh----cCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEE
Q 007982 195 KKTRDFSGGWRMRIALARALF----INPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~ 267 (582)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.++|+++ +.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 345569999999999999999 589999999999999999999999999876 35999999997664 5799999
Q ss_pred EEe
Q 007982 268 HMQ 270 (582)
Q Consensus 268 ~l~ 270 (582)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-13 Score=142.26 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhcCEEE
Q 007982 481 MPMKNLSDGQRSRVVFAWLAY----RQPHMLLLDEPTNHLDIETIDSLAEALNEWD---GGLVLVSHDFRLINQVAHEIW 553 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~~~~~~d~i~ 553 (582)
.++..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 456789999999999999999 5899999999999999999999999998863 5899999997765 6899999
Q ss_pred EEe
Q 007982 554 VCE 556 (582)
Q Consensus 554 ~l~ 556 (582)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-15 Score=159.51 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=95.8
Q ss_pred eEeeeEEEec--CCEEEEEcCCCCcHHHHHHHHhCCCCCCC----cEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc
Q 007982 383 YKNLDFGVDL--DSRVALVGPNGAGKSTLLKLMTGDLVPLD----GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE 456 (582)
Q Consensus 383 l~~vsl~i~~--Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~----G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 456 (582)
...|++.|.+ |++++|+||||||||||+++|+|++.|++ |.+...+... + ... .+... .. ..+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-~---~~~--~~~~~-~~-~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-G---DEQ--AMQYS-DY-PQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-S---CTT--SSCTT-TH-HHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-C---Ccc--cCChh-HH-HHHHHH
Confidence 3568999999 99999999999999999999999999998 7664321000 0 000 00000 00 111110
Q ss_pred CCCChHHHHHHHHHhc--CCCCccccCCCCCCChhHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHH
Q 007982 457 YPGNEEEKMRAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAWLAY-RQPHMLLLDE---PT------NHLDIETIDSL 524 (582)
Q Consensus 457 ~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDE---Pt------~~LD~~~~~~l 524 (582)
+.. .........+.+ +-.+.... .+..+|+|++++..+++++. .+|+++|||| |+ .++|+..+..+
T Consensus 230 ~q~-~~~~~~t~~~nl~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 230 HQR-YIDYAVRHSHKIAFIDTDFITT-QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HHH-HHHHHHHHCSSEEEESSCHHHH-HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HHH-HHHHHHhccCCEEEEeCCchHH-HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 000 000000111111 11111111 12356777788888888774 6999999999 65 58999999998
Q ss_pred HHHHHh----cCceEEEEecCHHHHHhhcCEEEEEe
Q 007982 525 AEALNE----WDGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 525 ~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
.++|.+ .+.+||+++|. ....++|+++.+++
T Consensus 308 ~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 308 QQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 888743 36789999986 45556777665553
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-15 Score=140.92 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=82.8
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce---------eEEEechhhhhhcCCcccHHHHHHhc---
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL---------RIAQFHQHLAEKLDMDMSALQYMIKE--- 456 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~---------~~~~~~q~~~~~~~~~~~~~~~~~~~--- 456 (582)
.+.+|++++|+||||||||||+++|+|. |..|.|...+.. .++|++|... ...++.+++...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999998 778988775431 1233333221 112233322110
Q ss_pred C--CCChHHHHHHHHHhcCCCCccc-cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC-
Q 007982 457 Y--PGNEEEKMRAAIGRFGLTGKAQ-VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWD- 532 (582)
Q Consensus 457 ~--~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~- 532 (582)
+ .... ..+..++..+++..... ..++..+|+|++|+++++|++.++|+++ +|+.....+.+.+..+.
T Consensus 79 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 79 YAKEGYF-VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHTSCE-EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HhccCCe-EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 0 0000 00000111112211110 2344689999999999999999999886 68888888888776643
Q ss_pred -ceEEEEecC
Q 007982 533 -GGLVLVSHD 541 (582)
Q Consensus 533 -~tvi~vsHd 541 (582)
..+++.|++
T Consensus 150 ~~~~~i~t~~ 159 (191)
T 1zp6_A 150 FEHHVLPVSG 159 (191)
T ss_dssp GGGGEEECTT
T ss_pred ccccEEECCC
Confidence 234555553
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=126.69 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=75.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhc--CCCCCCC-ceeeeeechHHH----HHHHHHHHHhccccCCCcchHHHHHHH
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGE--IEASDMS-SLEAVISCDEER----LKLEKEAEILGAQEDGGGEQLERVYER 166 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~--~~~~~~~-~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (582)
-|++|++++|+||||||||||++.|++ +.+++.+ ...+.+.++... ..+......+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g---------------- 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG---------------- 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTT----------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcC----------------
Confidence 378999999999999999999999987 4433110 001222222111 01111111111
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH-HHHHHHHh--cCCCceeecCCCCCCCHH-------H--
Q 007982 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR-IALARALF--INPTILLLDEPTNHLDLE-------A-- 234 (582)
Q Consensus 167 l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR-v~LAraL~--~~P~lLlLDEPt~~LD~~-------~-- 234 (582)
+... ++++.+- ....++..+... +.-+..++ .+|++|++|||++.+|+. +
T Consensus 84 ---~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r 145 (243)
T 1n0w_A 84 ---LSGS-------DVLDNVA--------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSAR 145 (243)
T ss_dssp ---CCHH-------HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHH
T ss_pred ---CCHH-------HHhhCeE--------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHH
Confidence 0100 1111111 112344444332 22233333 589999999999999975 2
Q ss_pred ---HHHHHHHH----hhcCcEEEEEecCHHHHHh-------------------hcCeEEEEeCC
Q 007982 235 ---CVWLEETL----KKFDRILVVISHSQDFLNG-------------------VCTNIIHMQNK 272 (582)
Q Consensus 235 ---~~~l~~~l----~~~~~tviivsHd~~~~~~-------------------~~d~i~~l~~G 272 (582)
...+...| ++.+.|||+++|....... +||++++|+.+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 146 QMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 22333333 3458899999997665433 89999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-13 Score=146.91 Aligned_cols=167 Identities=10% Similarity=0.036 Sum_probs=98.5
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCE--EEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cC--ceeEEEechh
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSR--VALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HN--HLRIAQFHQH 438 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~--~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~--~~~~~~~~q~ 438 (582)
.|++.+ ++.|++ .+ ++++||+|.+|++ ++|+||||||||||+++|+|+.- .|.... .+ ...+++++|.
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 466667 788864 45 9999999999999 99999999999999999999852 221111 00 1246777775
Q ss_pred hhhhcCCcccHHHHHHhcCCCC-----------hHHHHHHHHHhc-CCCCc---cccCC-----------CCCCChhHHH
Q 007982 439 LAEKLDMDMSALQYMIKEYPGN-----------EEEKMRAAIGRF-GLTGK---AQVMP-----------MKNLSDGQRS 492 (582)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gl~~~---~~~~~-----------~~~LSgGqkq 492 (582)
.. +....++.+++....... ....+..+|..+ ++... ..+.+ -..|+..+
T Consensus 91 ~~--l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 91 SN--VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp ----CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred Cc--cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 32 111222222221110000 123445556554 54311 00111 12466555
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDF 542 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~ 542 (582)
+.|+++|..++++|++||||..|.+.....+.+.+++ .+.+|+.+|.|-
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7899999999999999999999999888777777664 356788888763
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-15 Score=167.34 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=86.2
Q ss_pred ceEEeeeEEEECCe--eeeEee----------eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CCCceeeeeechHH
Q 007982 72 DIRIESLSVTFHGH--DLIVDS----------ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-DMSSLEAVISCDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y~~~--~il~~v----------sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-~~~~~~~~i~~~~~ 138 (582)
.+.++||++.|+.+ ++|+.+ +|+++. ++|||||||||||||++|+|+..| +.|.+. +.+.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt----~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVT----RCPL 82 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CC----CSCE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEE----EcCE
Confidence 57899999999753 355444 366654 999999999999999999999766 444321 1110
Q ss_pred HHH------HHHHHHHhccccC-CCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 139 RLK------LEKEAEILGAQED-GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 139 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
.+. .......+++.++ ........+.+ .+......++.. ...+| ++++.++
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e------------~i~~~~~~~~~~-------~~~~s---~~~i~l~ 140 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEK------------EINKAQNAIAGE-------GMGIS---HELITLE 140 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHT------------THHHHHHHHHCS-------SSCCC---SCCEEEE
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHH------------HHHHHHHHhcCC-------ccccc---hHHHHHH
Confidence 000 0000001111110 00111111211 111111111110 00111 2233344
Q ss_pred HHHhcCCCceeecCC------CCCCCHHHHHHHHHHHhhc-----CcEEEEEecCHHHH--------Hhh----cCeEEE
Q 007982 212 RALFINPTILLLDEP------TNHLDLEACVWLEETLKKF-----DRILVVISHSQDFL--------NGV----CTNIIH 268 (582)
Q Consensus 212 raL~~~P~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tviivsHd~~~~--------~~~----~d~i~~ 268 (582)
.+....|+++|+||| |++||+..+..+.+++.++ ..++++++||++.+ ..+ +..|++
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 444568999999999 9999999999999988875 45899999997633 222 355788
Q ss_pred EeCCeE
Q 007982 269 MQNKQL 274 (582)
Q Consensus 269 l~~G~i 274 (582)
+.++.+
T Consensus 221 lTK~Dl 226 (608)
T 3szr_A 221 LTKPDL 226 (608)
T ss_dssp EECGGG
T ss_pred ecchhh
Confidence 876433
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-13 Score=126.29 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=36.2
Q ss_pred hcCCCceeecCCCC-CCCHHHHHHHHHHHhhc---CcEEEEEecCHH
Q 007982 215 FINPTILLLDEPTN-HLDLEACVWLEETLKKF---DRILVVISHSQD 257 (582)
Q Consensus 215 ~~~P~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tviivsHd~~ 257 (582)
+.+|++||||||++ ++|+..+..+.+++... +.++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34999999999995 99999999988888653 679999999753
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-14 Score=141.19 Aligned_cols=131 Identities=20% Similarity=0.276 Sum_probs=82.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHh---CCCCCCCcEEEEcCc---eeEEEechhhh--hhcCCcccHHHHHHh--------
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMT---GDLVPLDGMVRRHNH---LRIAQFHQHLA--EKLDMDMSALQYMIK-------- 455 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~---Gl~~p~~G~i~~~~~---~~~~~~~q~~~--~~~~~~~~~~~~~~~-------- 455 (582)
.+++++|+||||||||||+++|+ |+..|+.|.|.+.+. ..+++..+.+. ..+.+..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 37899999999999999999999 999999998865421 01111111100 111222333333321
Q ss_pred -----cCCCChHHHHHHHHH--hcC------------CCCccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe----C
Q 007982 456 -----EYPGNEEEKMRAAIG--RFG------------LTGKAQVMPMKNLSDGQRSRVVFAWLA-YRQPHMLLLD----E 511 (582)
Q Consensus 456 -----~~~~~~~~~~~~~l~--~~g------------l~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLD----E 511 (582)
.++.. ..+++.+.. .++ +. ....+++..||| || +++ +.+|++++|| |
T Consensus 106 ~~il~g~~~~-~~~~~~l~~~~~~~~vi~L~~~~~~~l~-r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRT-LGQAEALDKICEVDLVISLNIPFETLKD-RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCS-HHHHHHHHTTCCCCEEEEEECCHHHHHH-HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCC-HHHHHHHHhhcCCCEEEEEECCHHHHHH-HHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 12222 223333322 222 11 112345578999 66 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 007982 512 PTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~ 531 (582)
||++||+.+...+.+.+..+
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999999999988888776
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-14 Score=131.41 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=72.0
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHH
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (582)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|... .++. ..+.+ ..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~~------------~~~~~---------~~~~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFFD------------TKDLI---------FRLK 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEEE------------HHHHH---------HHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEEE------------HHHHH---------HHHH
Confidence 456778999999999999999999999999877666311 1110 00100 0011
Q ss_pred HHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecCH
Q 007982 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN-HLDIETIDSLAEALNEW---DGGLVLVSHDF 542 (582)
Q Consensus 467 ~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~vsHd~ 542 (582)
....... .. -....+.+|++||||||++ ++|+.....+.++++.. +.++|++||..
T Consensus 84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111000 00 0112234999999999985 99999999988888654 67899999976
Q ss_pred H
Q 007982 543 R 543 (582)
Q Consensus 543 ~ 543 (582)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-16 Score=149.94 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=93.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHH
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA 467 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (582)
|++++|+||||||||||+++|++ |..|.+...+.. ..+++++... .....++.+++.. .+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~--------~~~~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITD--------LTVN 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHH--------HHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHH--------HHHH
Confidence 67999999999999999999997 667877664321 1122222210 0011122222110 0111
Q ss_pred HHHhcCC----C---CccccCCCCCC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-
Q 007982 468 AIGRFGL----T---GKAQVMPMKNL--SDGQRSRVVFAW------LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW- 531 (582)
Q Consensus 468 ~l~~~gl----~---~~~~~~~~~~L--SgGqkqrv~lAr------al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 531 (582)
.+. .+. + .......+..+ |+|++|++.++. +++.+|....+|+ +||+..+.. .+.+..+
T Consensus 69 ~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 69 FLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp HHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred HHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 111 110 0 00000112235 888888888888 8889998888884 899988877 7766654
Q ss_pred --CceEEEEecC-HHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 532 --DGGLVLVSHD-FRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 532 --~~tvi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+.++|.+||. ++.+.++||+|+ ++|+++ ++|+++-+
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPL 182 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCch
Confidence 4589999999 999999999998 999985 57777544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-15 Score=153.62 Aligned_cols=169 Identities=9% Similarity=-0.020 Sum_probs=95.0
Q ss_pred eEeeeEEEeC--CcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 88 IVDSELELNY--GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 88 l~~vsl~i~~--Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
...|+++|.+ |++++|+||||||||||+++|+|+..++.+...+.+.+. ... ...........+..+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~-------~~~--~~~~~~~~~~~~~~I~~ 228 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF-------EKL--GGDEQAMQYSDYPQMAL 228 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH-------HSS--SSCTTSSCTTTHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH-------hhc--CCCcccCChhHHHHHHH
Confidence 4679999999 999999999999999999999999877531100111000 000 00000000000111111
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh-cCCCceeecC---CC------CCCCHHHH
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF-INPTILLLDE---PT------NHLDLEAC 235 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-~~P~lLlLDE---Pt------~~LD~~~~ 235 (582)
.... .......+.+-+..++.. ..+..+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+
T Consensus 229 ~~q~--~~~~~~t~~~nl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 229 GHQR--YIDYAVRHSHKIAFIDTD--FITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp HHHH--HHHHHHHHCSSEEEESSC--HHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH
T ss_pred HHHH--HHHHHHhccCCEEEEeCC--chHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH
Confidence 0000 000000011101111111 123345567788888988888875 6999999999 65 58999999
Q ss_pred HHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEe
Q 007982 236 VWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQ 270 (582)
Q Consensus 236 ~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~ 270 (582)
..+.+.|.+ .+.++|+++|. +...++|+++.+|+
T Consensus 305 ~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 305 QQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 888888743 36789999976 45666777666554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-14 Score=141.67 Aligned_cols=118 Identities=17% Similarity=0.046 Sum_probs=81.6
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHH
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEE 463 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (582)
++++|+ +|++++|+|+||+||||++..|+|++.+..|+|...+. -.+.... . .
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~-----d~~~~~~-------~-------------~ 143 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA-----DTQRPAA-------R-------------E 143 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC-----CSSCHHH-------H-------------H
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC-----CcccHhH-------H-------------H
Confidence 356666 89999999999999999999999999988888865321 1111100 0 0
Q ss_pred HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHHhc
Q 007982 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP-TNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 464 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~~~ 531 (582)
....+.+..|+.-.... + ..+..+.+|.+|+++...+++++|+||| +.++|......+.......
T Consensus 144 ql~~~~~~~~l~~~~~~-~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 144 QLRLLGEKVGVPVLEVM-D--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHTCCEEECC-T--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCeEEEEcC-C--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 11123344565432110 1 1234456789999998899999999999 9999998888887776654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-13 Score=141.91 Aligned_cols=142 Identities=25% Similarity=0.247 Sum_probs=87.2
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC-----------CCCCcEEEEcCceeEEEechhhhhhcCCcccHHH
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL-----------VPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQ 451 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~-----------~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 451 (582)
-++++|+++.|++++|+|+|||||||||+.|+|.. .|..|.|...+...+ .+.+.+. ......+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~DtpG----li~~a~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIPG----IIEGASE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECCC----CCCCGGG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEeccc----cccchhh
Confidence 47999999999999999999999999999999983 344444443221111 1111110 0000000
Q ss_pred HHHhcCCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH---HH
Q 007982 452 YMIKEYPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS---LA 525 (582)
Q Consensus 452 ~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~---l~ 525 (582)
. ..+... ..+++..++..++++ ..++.+||+|++|++.+|++|+..|.+|+| |.+|+..... +.
T Consensus 222 ~--~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~ 291 (416)
T 1udx_A 222 G--KGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALA 291 (416)
T ss_dssp S--CCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHH
T ss_pred h--hhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHH
Confidence 0 000000 001122234444554 346678999999999999999999999999 9999865533 33
Q ss_pred HHHHhcCceEEEEe
Q 007982 526 EALNEWDGGLVLVS 539 (582)
Q Consensus 526 ~~l~~~~~tvi~vs 539 (582)
+.++..+.++++||
T Consensus 292 ~~l~~~g~~vi~iS 305 (416)
T 1udx_A 292 DALAREGLAVLPVS 305 (416)
T ss_dssp HHHHTTTSCEEECC
T ss_pred HHHHhcCCeEEEEE
Confidence 33344455777666
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-13 Score=132.54 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=79.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh---cCCCCCCCceeeeeechHHHH--HHHHHHHHhccccC--CCcchHHHHHHHHH-
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIG---EIEASDMSSLEAVISCDEERL--KLEKEAEILGAQED--GGGEQLERVYERLE- 168 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~---~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~l~- 168 (582)
++++++|+||||||||||+++|+ |+..++.+.+ .+.+... ........+..... +.......+...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF----LRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH----HHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH----HHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 8876653321 1111100 01111111111111 11111222322221
Q ss_pred ---------cCChhHHHHHHHHHH--HhCC------------CChhhhhccCCCCChhHHHHHHHHHHH-hcCCCceeec
Q 007982 169 ---------ALDASTAEKRAAEIL--YGLG------------FNKTMQAKKTRDFSGGWRMRIALARAL-FINPTILLLD 224 (582)
Q Consensus 169 ---------~~~~~~~~~~~~~~l--~~lg------------l~~~~~~~~~~~LSGGqrqRv~LAraL-~~~P~lLlLD 224 (582)
.++... ..+..+. ..++ + ....++++..||| |+ +|| +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l-~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLK-DRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp CTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHH-HHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred cCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHH-HHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 111111 2223332 2233 2 2345678889999 66 778 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHhhc
Q 007982 225 ----EPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 225 ----EPt~~LD~~~~~~l~~~l~~~ 245 (582)
|||++||+.+...+.+.|+++
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHH
Confidence 999999999999998888776
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-15 Score=141.97 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCC--ChhHHHHHHHHH------HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecC-HHHHHhhcCe
Q 007982 198 RDF--SGGWRMRIALAR------ALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHS-QDFLNGVCTN 265 (582)
Q Consensus 198 ~~L--SGGqrqRv~LAr------aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd-~~~~~~~~d~ 265 (582)
..+ |+|++|++.++. +++.+|....+|+ +||+..+.. .+.+..+ +.++|.+||. ++.+..+||+
T Consensus 91 ~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~ 166 (189)
T 2bdt_A 91 AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKN 166 (189)
T ss_dssp HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHH
T ss_pred HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHH
Confidence 445 999999998888 9999999999994 899988777 6666554 4689999999 9999999999
Q ss_pred EEEEeCCeEEEEcCChhH
Q 007982 266 IIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 266 i~~l~~G~i~~~~g~~~~ 283 (582)
|+ ++|+++ ..|+++.
T Consensus 167 i~--~~g~~~-~~~~~~~ 181 (189)
T 2bdt_A 167 LK--TNPRFI-FCMAGDP 181 (189)
T ss_dssp HH--HCGGGS-CC-----
T ss_pred Hh--hCCcEE-EeecCCc
Confidence 99 999986 3555543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-13 Score=130.30 Aligned_cols=43 Identities=14% Similarity=-0.034 Sum_probs=37.0
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
.++..+|+|++|+++++|++..+|+++ +|+.....+.+.+..+
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 456789999999999999999999987 6888888888877654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-13 Score=140.00 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=82.9
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-CCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
+|++++ +++|++++|+||||||||||+++|+++.+++ .+.+. ..+... + +.... ....
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~----~~e~~~------e-~~~~~-~~~~------- 185 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII----TIEDPI------E-YVFKH-KKSI------- 185 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE----EEESSC------C-SCCCC-SSSE-------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE----EecccH------h-hhhcc-CceE-------
Confidence 344444 7899999999999999999999999887654 33221 111000 0 00000 0000
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
+.. ..+|+ .+..| +.+|+++|..+|++|++|||| |+++...+.+.. ..
T Consensus 186 ----v~Q-----------~~~g~-------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~ 233 (372)
T 2ewv_A 186 ----VNQ-----------REVGE-------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ET 233 (372)
T ss_dssp ----EEE-----------EEBTT-------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TT
T ss_pred ----EEe-----------eecCC-------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hc
Confidence 000 01222 12344 569999999999999999999 887766555544 34
Q ss_pred CcEEEEEecCHHHHHhhcCeEEEE
Q 007982 246 DRILVVISHSQDFLNGVCTNIIHM 269 (582)
Q Consensus 246 ~~tviivsHd~~~~~~~~d~i~~l 269 (582)
+.++|.++|+.+ +..+|||++.|
T Consensus 234 g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 234 GHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp TCEEEECCCCCS-HHHHHHHHHHT
T ss_pred CCEEEEEECcch-HHHHHHHHHHh
Confidence 778999999966 67788887655
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-11 Score=127.46 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=82.8
Q ss_pred EEecCCEEEEEcCCCCcHHHHHH--HHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLK--LMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~--ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (582)
.|.+|++++|+||||||||||++ ++.++.+|+.|.- + ...-|+.... . ....+++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~-~~viyid~E~----~---------------~~~~rl~ 230 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---E-GKCLYIDTEG----T---------------FRPVRLV 230 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---S-SEEEEEESSS----C---------------CCHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---C-CcEEEEeCCC----c---------------cCHHHHH
Confidence 48899999999999999999999 4467777654410 0 0111221110 0 0112233
Q ss_pred HHHHhcCCCCcc--ccCCCCCCChhHHHH--HHHHHHH--ccCCCEEEEeCCCCCCCHHHH------------HHHHHHH
Q 007982 467 AAIGRFGLTGKA--QVMPMKNLSDGQRSR--VVFAWLA--YRQPHMLLLDEPTNHLDIETI------------DSLAEAL 528 (582)
Q Consensus 467 ~~l~~~gl~~~~--~~~~~~~LSgGqkqr--v~lAral--~~~p~lLlLDEPt~~LD~~~~------------~~l~~~l 528 (582)
....++|+.... ..-.+.....++.++ +.-+..+ ..+|++|++||||+.+|.+.. ..+...|
T Consensus 231 ~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 231 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRAL 310 (400)
T ss_dssp HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHH
Confidence 334444443210 000011122333333 3323333 257999999999999996432 2333333
Q ss_pred ----HhcCceEEEEecCH-------------------HHHHhhcCEEEEEeCC
Q 007982 529 ----NEWDGGLVLVSHDF-------------------RLINQVAHEIWVCENQ 558 (582)
Q Consensus 529 ----~~~~~tvi~vsHd~-------------------~~~~~~~d~i~~l~~G 558 (582)
++++.|||+|+|.. ..+..++|.+++|+.+
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 44588999999982 2357789999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-13 Score=140.59 Aligned_cols=173 Identities=11% Similarity=0.070 Sum_probs=93.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhcCCCCC-------CCceeeeeechHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRR--YGLLGLNGCGKSTLLTAIGEIEASD-------MSSLEAVISCDEERLKL 142 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~--~~LvG~NGsGKSTLl~~l~~~~~~~-------~~~~~~~i~~~~~~~~~ 142 (582)
.|++++ ++.|++.+ |+++||+|++|++ ++||||||||||||+|+|+|+.... .+.....+.+..+...+
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 577777 89998888 9999999999999 9999999999999999999874211 00000011110000000
Q ss_pred HHHHHHhcc-ccCCCcc--hHHHHHHHHHcCChhHHHHHHHHHHHhC-CCChh---hhhccC-----------CCCChhH
Q 007982 143 EKEAEILGA-QEDGGGE--QLERVYERLEALDASTAEKRAAEILYGL-GFNKT---MQAKKT-----------RDFSGGW 204 (582)
Q Consensus 143 ~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~l-gl~~~---~~~~~~-----------~~LSGGq 204 (582)
...+.. ....... .....+..+ ...+...+.++|... ++... ..+..+ ..|+-..
T Consensus 94 ---~~~ltv~D~~~~g~~~~~~~~~~~i----~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D 166 (427)
T 2qag_B 94 ---RLKLTIVSTVGFGDQINKEDSYKPI----VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD 166 (427)
T ss_dssp ---EEEEEEEEEECCCC-CCHHHHSHHH----HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH
T ss_pred ---ccccchhhhhhhhhccccchhhhHH----HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH
Confidence 000000 0000000 000000000 012234455555544 43210 011111 2455444
Q ss_pred HHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCH
Q 007982 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQ 256 (582)
Q Consensus 205 rqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~ 256 (582)
+.++++|..+++||++||||..|.+.....+.+.+++ .+..|+.+|.|-
T Consensus 167 ---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 ---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp ---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred ---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 8999999999999999999999999888888777654 367888888763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-12 Score=114.32 Aligned_cols=86 Identities=24% Similarity=0.252 Sum_probs=61.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
+|+.++|+||||||||||+++|++.+.+ +|. ...|+... . +. ..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~--~-~~-------------~~------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAA--S-MP-------------LT------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETT--T-SC-------------CC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHH--H-hh-------------HH------------
Confidence 8999999999999999999999999876 451 12222211 0 00 00
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---Cce-EEEEecC
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGG-LVLVSHD 541 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t-vi~vsHd 541 (582)
+++.+|++|+||||+. +|....+.+.+.++.. +.+ +|++||.
T Consensus 79 ---------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ---------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ---------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ---------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356899999999998 6665577788887653 567 8888884
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=120.39 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=80.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCCh
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDA 172 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (582)
-..++|++++|+||||||||||+++|+|+.+++ ...+.+.+....... .....+.+ .++....+..+...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~--~~~g~v~~ttr~~~~-~e~~gi~y-----~fq~~~~f~~~~~~-- 80 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY--DTQVSVSHTTRQPRP-GEVHGEHY-----FFVNHDEFKEMISR-- 80 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT--TEEECCCEECSCCCT-TCCBTTTB-----EECCHHHHHHHHHT--
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC--ceEEEEEecCCCCCc-ccccCceE-----EECCHHHHHHHHhc--
Confidence 467899999999999999999999999987752 112222222110000 00000111 11111111111100
Q ss_pred hHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEE
Q 007982 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVI 252 (582)
Q Consensus 173 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviiv 252 (582)
.++++.+. ....+.|-.+++ +..++..++++||| ||+.++..+.+.+.+ +.||+++
T Consensus 81 -------~~f~E~~~--------~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~~-~~tI~i~ 136 (219)
T 1s96_A 81 -------DAFLEHAE--------VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMPH-ARSIFIL 136 (219)
T ss_dssp -------TCEEEEEE--------ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTT-CEEEEEE
T ss_pred -------CHHHHHHH--------HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHccC-CEEEEEE
Confidence 00000000 011111211222 34556678999999 999999999998873 6799999
Q ss_pred ecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 253 SHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 253 sHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+++.+.. |+ +.+| .++.+++.
T Consensus 137 th~~~~l~~---Rl--~~rG-----~~~~e~i~ 159 (219)
T 1s96_A 137 PPSKIELDR---RL--RGRG-----QDSEEVIA 159 (219)
T ss_dssp CSSHHHHHH---HH--HTTS-----CSCHHHHH
T ss_pred CCCHHHHHH---HH--HHcC-----CCCHHHHH
Confidence 999998876 43 5666 35555543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=126.65 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.9
Q ss_pred cCCCceeecCCCCCCCHHHH------------HHHHHHH----hhcCcEEEEEecCH-------------------HHHH
Q 007982 216 INPTILLLDEPTNHLDLEAC------------VWLEETL----KKFDRILVVISHSQ-------------------DFLN 260 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~------------~~l~~~l----~~~~~tviivsHd~-------------------~~~~ 260 (582)
.+|++|++||||+.+|.... ..+++.| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996432 3334433 45588999999982 2357
Q ss_pred hhcCeEEEEeCC
Q 007982 261 GVCTNIIHMQNK 272 (582)
Q Consensus 261 ~~~d~i~~l~~G 272 (582)
.+||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 789999999865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-12 Score=131.19 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=73.4
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEc-C-------ceeEEEechhhhhhcCCcccHHHHH
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRH-N-------HLRIAQFHQHLAEKLDMDMSALQYM 453 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~-~-------~~~~~~~~q~~~~~~~~~~~~~~~~ 453 (582)
++++++. .+|++++|+||||||||||+++|+|++. |.+|.|... + ...+++++|... +....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh
Confidence 4555553 4799999999999999999999999999 999999754 2 234677777532 22222333321
Q ss_pred HhcCCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 454 IKEYPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 454 ~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
....+.. ....+.++++.+|+..+.. .++.+|| ||+||++||+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcC
Confidence 1111110 1233567788899976654 5567999 999999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-13 Score=125.68 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=50.3
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
.++++.|+ +..+++++||+|.+|++++|+||||||||||+|+|+|++ |++|.|...+
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 45666775 356899999999999999999999999999999999999 9999997654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=127.36 Aligned_cols=137 Identities=13% Similarity=0.197 Sum_probs=76.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCCcEEEEcCc---------eeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 395 RVALVGPNGAGKSTLLKLMTG-DLVPLDGMVRRHNH---------LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G-l~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
.+.|+||||+|||||+++|+| ++.|..|.+...+. ..++++++.....+.. +. ........
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP--SD-------MGNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC--C-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH--hh-------cCCcchHH
Confidence 489999999999999999999 88999998865432 1122222221100000 00 00011113
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCH
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDF 542 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 542 (582)
+++.++.+.-..... ... .||| +..+|++||||||++ ||..+...|.+.+.+. +.++|++||+.
T Consensus 109 ~~~~i~~~~~~~~~~-~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQVD-FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhcccc-ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 444444432211111 111 5676 788999999999999 9999999999999986 45799999996
Q ss_pred HHH-HhhcCEEEE
Q 007982 543 RLI-NQVAHEIWV 554 (582)
Q Consensus 543 ~~~-~~~~d~i~~ 554 (582)
+.+ ..+.+|+.+
T Consensus 175 ~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 175 SPIIAPIKSQCLL 187 (354)
T ss_dssp CSSCHHHHTTSEE
T ss_pred HHHHHHHHhhceE
Confidence 542 234445433
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-12 Score=131.16 Aligned_cols=167 Identities=11% Similarity=0.007 Sum_probs=94.8
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------------eEEEechhhhhhcCCcccHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------------RIAQFHQHLAEKLDMDMSALQY 452 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~~ 452 (582)
..+|++++|+||||||||||++.|+|+++|++|+|...+.. .+.+++|.. .+.+..++.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 36899999999999999999999999999999999764321 112333321 11222233333
Q ss_pred HHhcCCCChHHHHH-HHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 453 MIKEYPGNEEEKMR-AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 453 ~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
+.... ..... -+++..|..+.. ...+.+|| .+++++..++.+++||.+|. .|. ...+...-...
T Consensus 204 l~~~~----~~~~d~vliDtaG~~~~~-~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~~ 268 (328)
T 3e70_C 204 IQHAK----ARGIDVVLIDTAGRSETN-RNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEAV 268 (328)
T ss_dssp HHHHH----HHTCSEEEEEECCSCCTT-TCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHHS
T ss_pred HHHHH----hccchhhHHhhccchhHH-HHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHhc
Confidence 21100 00000 011222332211 11122333 48999999999999996665 332 22233333356
Q ss_pred CceEEEEecCH---------HHHHhhcCEEEEEeCCeEEE--EcCCHHHHHHH
Q 007982 532 DGGLVLVSHDF---------RLINQVAHEIWVCENQAVTR--WEGDIMDFKLH 573 (582)
Q Consensus 532 ~~tvi~vsHd~---------~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~ 573 (582)
+.++|++||.- ..+....-.|.++..|+.+. ..-+++.+...
T Consensus 269 ~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~ 321 (328)
T 3e70_C 269 KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLER 321 (328)
T ss_dssp CCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHH
T ss_pred CCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHH
Confidence 78999999953 24445566788888887431 13345555443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-14 Score=146.25 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=100.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------ee
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LR 431 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~ 431 (582)
|+++++++.|+. ..++++++|++.+|++++|+||||||||||++.|+|++.|++|+|...+. .+
T Consensus 30 ie~~~~~~~~~~-~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAAV-RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHHH-HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccCh-HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 556677777753 56899999999999999999999999999999999999999999865321 12
Q ss_pred EEEechhhhhhcCCc----------ccHHHH-------------------------HHhc-------C-CC-ChH-H---
Q 007982 432 IAQFHQHLAEKLDMD----------MSALQY-------------------------MIKE-------Y-PG-NEE-E--- 463 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~----------~~~~~~-------------------------~~~~-------~-~~-~~~-~--- 463 (582)
+++++|......... ....+. +... . +. .+. +
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 334444321100000 000000 0000 0 00 000 0
Q ss_pred -HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 464 -KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR------QPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 464 -~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
.+.+....+.++. .+..+...+|+|++|++..|++++. .|+++. ||++|...++.|.+.|.++
T Consensus 189 ~~i~~~~~ivvlNK-~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNK-ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEEC-CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEc-hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0112222233321 1112224689999999999999887 688886 9999999999999888764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-13 Score=142.04 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHH
Q 007982 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLIN 546 (582)
Q Consensus 485 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~ 546 (582)
+||+||+||+..+++++.+|+++ ||| ..+.+.+++. +.+|+++||+.-.+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 79999999999889999999987 999 4555555543 568999999644333
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-14 Score=149.33 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=88.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce---------------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--------------- 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--------------- 430 (582)
++.++++.+.|+ ...+|+++ + ..+|++++|+|||||||||||++|+|++.|++|.|...+..
T Consensus 143 ~~~l~~Lg~~~~-~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTAH-NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCHH-HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCHH-HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 456777777664 24577787 5 37899999999999999999999999999999998754321
Q ss_pred eEEEec---------hhhhhhcCC----cccHHHHHHhc---------CCCChHHHHHHHHHhcCCCCccccCCCCCCCh
Q 007982 431 RIAQFH---------QHLAEKLDM----DMSALQYMIKE---------YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSD 488 (582)
Q Consensus 431 ~~~~~~---------q~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 488 (582)
.+++.+ |.+...+.. ..++.+.+... ....+...+...|..+|+.... .+.+|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---ISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---HHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---HHHHHHH
Confidence 011111 221100000 12444443221 0111223344467788887542 3478999
Q ss_pred hHHHHHHHHHHHccCCCEEE
Q 007982 489 GQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 489 Gqkqrv~lAral~~~p~lLl 508 (582)
||+|| |||+|+.+|+++.
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999976
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-12 Score=124.78 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=80.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc-cccCCCcchHHHHHHHHHcCChh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG-AQEDGGGEQLERVYERLEALDAS 173 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 173 (582)
.++|++++|+||||||||||+++|+++..+. +...+.+..++....... ...+. ........ .++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMDGFHLDNRL-LEPRGLLPRKGAPE----------TFDFE 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESGGGBCCHHH-HGGGTCGGGTTSGG----------GBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecCCCcCCHHH-HHHhcccccCCCCc----------hhhHH
Confidence 4689999999999999999999999887643 111234444432211100 01110 00000000 01111
Q ss_pred HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH-HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEE
Q 007982 174 TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA-RALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVI 252 (582)
Q Consensus 174 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA-raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviiv 252 (582)
.....+..+...=.+.-...+ ....+|+||+||+++| ++++.++.++++|||. ...+...--.+|++
T Consensus 87 ~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 87 GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAIWDVSIRL 154 (208)
T ss_dssp HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGTCSEEEEE
T ss_pred HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHhcCEEEEE
Confidence 111112222221111101122 3346799999999998 9999999999999984 11123333467888
Q ss_pred ecCHHH-HHhhcCe
Q 007982 253 SHSQDF-LNGVCTN 265 (582)
Q Consensus 253 sHd~~~-~~~~~d~ 265 (582)
+++.+. +.+++.|
T Consensus 155 d~~~~~~~~R~~~R 168 (208)
T 3c8u_A 155 EVPMADLEARLVQR 168 (208)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHH
Confidence 888776 4555555
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-12 Score=136.97 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=97.4
Q ss_pred EEeeeEEE---ECC--eeee---------EeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH
Q 007982 74 RIESLSVT---FHG--HDLI---------VDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER 139 (582)
Q Consensus 74 ~v~nls~~---y~~--~~il---------~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~ 139 (582)
++++++|+ |++ ..+| +++||.+++|++++|+||||||||||+++|+++.+++.+.+ .+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I----~ie~~~ 212 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI----TIEDVP 212 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE----EEESSS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE----EECCcc
Confidence 67788877 753 3445 99999999999999999999999999999999998875543 222110
Q ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 140 LKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.+....... .+++- ........++++..++..|+.++..+|+
T Consensus 213 --------e~~~~~~~~----------------------------~v~~v--~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 213 --------ELFLPDHPN----------------------------HVHLF--YPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp --------CCCCTTCSS----------------------------EEEEE--CC----------CCHHHHHHHHTTSCCS
T ss_pred --------ccCccccCC----------------------------EEEEe--ecCccccccccccCHHHHHHHHHhcCCC
Confidence 000000000 00000 0000001124667789999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
.+++|||+. .+... +.+.+..-..|++.++|+.+ +...++|+..|..+.
T Consensus 255 ~~l~~e~r~---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 255 RILLAELRG---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp EEEESCCCS---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred EEEEcCchH---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 999999996 22222 23333322347788999965 778899999887763
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-12 Score=136.91 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=92.0
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------------eEEEechhhhhhcCCc
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------------RIAQFHQHLAEKLDMD 446 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~ 446 (582)
+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.. .+++++|... ....
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHH
Confidence 57899999999999999999999999999999999999999875321 1233333211 1112
Q ss_pred ccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc-cCCC-EEEEeCCCCCCCHHHHHH
Q 007982 447 MSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY-RQPH-MLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 447 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~-lLlLDEPt~~LD~~~~~~ 523 (582)
.++.+++.... ...+ .-+++..|...... ..+.+| ++++.+++++. ..|+ +||...||.|.|... .
T Consensus 362 ~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~~-~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ 430 (503)
T 2yhs_A 362 SVIFDAIQAAKARNID----VLIADTAGRLQNKS-HLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--Q 430 (503)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCSCCCHH-HHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--H
T ss_pred HHHHHHHHHHHhcCCC----EEEEeCCCccchhh-hHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHHH--H
Confidence 22222221100 0000 00112223221111 111222 47788888664 5574 554555888865442 2
Q ss_pred HHHHHHhcCceEEEEecCHH----------HHHhhcCEEEEEeCCe
Q 007982 524 LAEALNEWDGGLVLVSHDFR----------LINQVAHEIWVCENQA 559 (582)
Q Consensus 524 l~~~l~~~~~tvi~vsHd~~----------~~~~~~d~i~~l~~G~ 559 (582)
+..+-...+.+.|++|| ++ .+..+.-.|.++..|.
T Consensus 431 ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 22323346788999999 33 3333445677776665
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-13 Score=147.39 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=96.1
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--------eEEEechh--------hhhh--
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--------RIAQFHQH--------LAEK-- 442 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--------~~~~~~q~--------~~~~-- 442 (582)
.++++++|.+.+|+.++|+|||||||||||++|+|+++|++|.|+..+.. .+....+. +...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999875432 11222111 0000
Q ss_pred --c--CC------ccc---HHHHHHhcCCCC------hHHHHHHHHHhc-----CCCCccc---c---CCCCCCChhHHH
Q 007982 443 --L--DM------DMS---ALQYMIKEYPGN------EEEKMRAAIGRF-----GLTGKAQ---V---MPMKNLSDGQRS 492 (582)
Q Consensus 443 --~--~~------~~~---~~~~~~~~~~~~------~~~~~~~~l~~~-----gl~~~~~---~---~~~~~LSgGqkq 492 (582)
+ .+ ..+ ....+....... ....+.+++.++ ++..... + .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 0 00 010 111111100000 001123333333 2221110 0 122468999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecCHHHHHhhcCE
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVL--VSHDFRLINQVAHE 551 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~--vsHd~~~~~~~~d~ 551 (582)
|+++|. + | |+|||+.+...+.+.+.++ +.|+++ +||+++.+...|+.
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 887651 1 7 9999998876666666554 467775 89999999988853
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-13 Score=128.02 Aligned_cols=136 Identities=18% Similarity=0.096 Sum_probs=80.7
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEcCceeEEEechhhhhhcCCcccHHHHHH----hcCC-CCh
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPL---DGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI----KEYP-GNE 461 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~---~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~----~~~~-~~~ 461 (582)
..+|++++|+||||||||||+++|+|++.|. .|.|...+.. +..+....+. ...+ ..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH--------------LDNRLLEPRGLLPRKGAPETFD 84 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB--------------CCHHHHGGGTCGGGTTSGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc--------------CCHHHHHHhcccccCCCCchhh
Confidence 4689999999999999999999999999864 4455433211 0001110000 0011 012
Q ss_pred HHHHHHHHHhcC----CCCccccCCCCCCChhHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEE
Q 007982 462 EEKMRAAIGRFG----LTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLV 536 (582)
Q Consensus 462 ~~~~~~~l~~~g----l~~~~~~~~~~~LSgGqkqrv~lA-ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi 536 (582)
...+.+.+..+. +.-...... ..+|+||+|++++| ++++.++.++++|||.. ..+...--.+|
T Consensus 85 ~~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i 152 (208)
T 3c8u_A 85 FEGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSI 152 (208)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEE
T ss_pred HHHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEE
Confidence 222333333321 111112222 36899999999998 88888888888888841 11233334688
Q ss_pred EEecCHHH-HHhhcCE
Q 007982 537 LVSHDFRL-INQVAHE 551 (582)
Q Consensus 537 ~vsHd~~~-~~~~~d~ 551 (582)
+++++.+. +.+++.|
T Consensus 153 ~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 153 RLEVPMADLEARLVQR 168 (208)
T ss_dssp EECCCHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHH
Confidence 89998887 5566666
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-12 Score=121.14 Aligned_cols=54 Identities=20% Similarity=0.025 Sum_probs=47.3
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
++..++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|+. ++.+
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 33456788888888999999999999999999999999999999999988 5544
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-13 Score=124.58 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=72.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEcCceeEEEec----hhhh-hhcC-------CcccHHHHHHhcCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPL---DGMVRRHNHLRIAQFH----QHLA-EKLD-------MDMSALQYMIKEYP 458 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~---~G~i~~~~~~~~~~~~----q~~~-~~~~-------~~~~~~~~~~~~~~ 458 (582)
++++|+|+||||||||+++|+|++.|+ .|.|...+.. +..+. .... .... .+...+ +..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~-i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG-DFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEEEE--EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc-cccCCccchhHHHHHhcCCceEEECCCcEEE--Eec---
Confidence 589999999999999999999999998 8999875532 11110 0000 0000 000000 000
Q ss_pred CChHH--HHHHHHHh-c-CCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE-------EEeCCCC---CCCHHHHHHH
Q 007982 459 GNEEE--KMRAAIGR-F-GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML-------LLDEPTN---HLDIETIDSL 524 (582)
Q Consensus 459 ~~~~~--~~~~~l~~-~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL-------lLDEPt~---~LD~~~~~~l 524 (582)
..... .+.+++.. + |+.... ...|||||+||++|||+++.+|++. +=|.|.. -+|....+.+
T Consensus 77 ~~~~~~a~l~~~i~~~l~g~dt~i----~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~ 152 (171)
T 2f1r_A 77 VSEEEGNDLDWIYERYLSDYDLVI----TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERI 152 (171)
T ss_dssp CCHHHHTCHHHHHHHHTTTCSEEE----EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHH
T ss_pred CChhhhhCHHHHHHhhCCCCCEEE----ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHH
Confidence 01111 34455555 4 343222 2349999999999999999998773 2355532 2344556666
Q ss_pred HHHHHh
Q 007982 525 AEALNE 530 (582)
Q Consensus 525 ~~~l~~ 530 (582)
.+.|.+
T Consensus 153 a~~i~~ 158 (171)
T 2f1r_A 153 AEFILS 158 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-12 Score=135.99 Aligned_cols=147 Identities=23% Similarity=0.210 Sum_probs=85.2
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-------CCCceeeeeechHHHHHHHHHHHHhccccCCCcchH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-------DMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (582)
-++++|+++.|+.++|||+||||||||+++|++..+. +.....+.+.+.... .......+......
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~-------~~~l~DtpGli~~a 219 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-------RFTLADIPGIIEGA 219 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSC-------EEEEEECCCCCCCG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcc-------eEEEEeccccccch
Confidence 4789999999999999999999999999999987431 001111222221100 00000000000000
Q ss_pred HHHHHHHHcCChhHH--HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHH
Q 007982 161 ERVYERLEALDASTA--EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL 238 (582)
Q Consensus 161 ~~~~~~l~~~~~~~~--~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l 238 (582)
.. ...+..... .+++..++..++++ +.++.+||+||+|++++|++|+..|.+|+| |.+|+.....+
T Consensus 220 ~~----~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~ 287 (416)
T 1udx_A 220 SE----GKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAV 287 (416)
T ss_dssp GG----SCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHH
T ss_pred hh----hhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHH
Confidence 00 000000000 11233344555553 356788999999999999999999999999 99998655332
Q ss_pred ---HHHHhhcCcEEEEEe
Q 007982 239 ---EETLKKFDRILVVIS 253 (582)
Q Consensus 239 ---~~~l~~~~~tviivs 253 (582)
.+.+++.+.++|+||
T Consensus 288 ~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 288 KALADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHHHTTTSCEEECC
T ss_pred HHHHHHHHhcCCeEEEEE
Confidence 333334455666655
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-11 Score=108.17 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.4
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcE-EEEEecC
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRI-LVVISHS 255 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t-viivsHd 255 (582)
++.+|++||||||++ +|....+.+.+++... +.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999998 6665577788877543 567 8888884
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-12 Score=127.72 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=74.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc-----------CCC-
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-----------YPG- 459 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----------~~~- 459 (582)
.+.+++|+|++|||||||+++|.+++.+. |. ....+..++|+.. ....+..+++... .+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f---~~~~~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF---YLTHEDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG---BCCHHHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc---cCChHHHHHHhccccccchhhhccCcch
Confidence 46799999999999999999999998763 20 0111222244422 1222333333211 122
Q ss_pred ChHHHHHHHHHhcCCC------Cc--cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 460 NEEEKMRAAIGRFGLT------GK--AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 460 ~~~~~~~~~l~~~gl~------~~--~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
.+...+.+.+..+.-. .. .... -..+||||+||+.+|++...+|+|||+||||+++|+..
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y-~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKY-DKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCE-ETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccC-ccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 2345566667666432 11 1111 25799999999999843333999999999999999853
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-13 Score=140.41 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=50.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
+|+++++++.|+++.+++++||++.+|++++|+||||||||||+++|+++..++.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 57888999999888899999999999999999999999999999999977655433
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-13 Score=130.15 Aligned_cols=163 Identities=22% Similarity=0.246 Sum_probs=85.3
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCC-------------CCCcEEEEcCceeEEEe-chhhhhhc-----CCcccHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLV-------------PLDGMVRRHNHLRIAQF-HQHLAEKL-----DMDMSALQ 451 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-------------p~~G~i~~~~~~~~~~~-~q~~~~~~-----~~~~~~~~ 451 (582)
.+|++++|+||||||||||+++|+|+++ |..|.+ .+.. +.++ ...+.... ....++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~~-~~~~~~~~~~~~i~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGKD-YYFVTREMMQRDIAAGDFIEHAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTTT-BEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCce-EEEccHHHHHHHHHcCCCEeeeeecC
Confidence 4789999999999999999999999875 455542 1210 1111 01111000 00001111
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHH---HHHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007982 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV---VFAW-LAYRQPHMLLLDEPTNHLDIETIDSLAEA 527 (582)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAr-al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 527 (582)
++ + ....+.++++++.-... .... .+ .|-++.. ..++ +++.+|.+++|||||+++|.++.+.+.+.
T Consensus 79 n~---~-g~~~~~i~~~~~~~~~~-~~~~----~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~ 148 (198)
T 1lvg_A 79 NL---Y-GTSKEAVRAVQAMNRIC-VLDV----DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKR 148 (198)
T ss_dssp EE---E-EEEHHHHHHHHHTTCEE-EEEC----CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHH
T ss_pred cc---C-CCCHHHHHHHHHcCCcE-EEEC----CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 10 1 11344556665432110 0000 00 1111110 1455 67888899999999999999888888877
Q ss_pred HHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 528 LNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 528 l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
|...... +.++|.. ..+|+|++.++ .+..+.++...+.+
T Consensus 149 l~~~~~~-~~~a~~~----~~~D~iivnd~-----le~a~~~l~~ii~~ 187 (198)
T 1lvg_A 149 LAAARTD-MESSKEP----GLFDLVIINDD-----LDKAYATLKQALSE 187 (198)
T ss_dssp HHHHHHH-TTGGGST----TTCSEEEECSS-----HHHHHHHHHHHTHH
T ss_pred HHHHHHH-HHHhhcc----CCceEEEECCC-----HHHHHHHHHHHHHH
Confidence 7654222 2445621 56898877653 24445555554433
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-10 Score=115.91 Aligned_cols=136 Identities=10% Similarity=0.115 Sum_probs=87.5
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG 470 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (582)
.+|++++|+|||||||||++..|++.+.+..|. ++.++.++.. ... ..+.+..+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~------------a~eqL~~~~~ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIA------------AVEQLKTYAE 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STT------------HHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cch------------HHHHHHHHHH
Confidence 468999999999999999999999999887782 2333333221 011 1222334445
Q ss_pred hcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----CceEEEE--ecCHH
Q 007982 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-----DGGLVLV--SHDFR 543 (582)
Q Consensus 471 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~v--sHd~~ 543 (582)
.+|+.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-. ..+++++ ||+.+
T Consensus 159 ~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 159 LLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp TTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred hcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 55654211 122 2334566664 4899999999 9999987665554433322 1234555 99999
Q ss_pred HHHhhcCEEEEEeCCeEE
Q 007982 544 LINQVAHEIWVCENQAVT 561 (582)
Q Consensus 544 ~~~~~~d~i~~l~~G~i~ 561 (582)
.+.++|+++..+..+.++
T Consensus 228 ~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 228 DMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 999999877656656654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.6e-11 Score=119.99 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=72.8
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHH
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKM 465 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (582)
++|...+|++++|+|||||||||++..|++.+.+..|+|...+. +.. ... ..++.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~--------D~~-----r~~------------a~eqL 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA--------DTF-----RAA------------AIEQL 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--------CTT-----CHH------------HHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc--------ccc-----cHH------------HHHHH
Confidence 45556789999999999999999999999999988887765321 100 000 01233
Q ss_pred HHHHHhcCCCCccccCCCCCCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q 007982 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRV---VFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 466 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAral~~~p~lLlLDEPt~ 514 (582)
..+++.+|+.. +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 45566677642 235789999999 89999999999999999975
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-12 Score=129.32 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHH
Q 007982 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLN 260 (582)
Q Consensus 183 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~ 260 (582)
+..+++.. ..++. .+||+||+||+..+++++.+|+++ ||| ..+.+.|+++ +.+|+++||+...+.
T Consensus 127 l~~vd~~~-~~~~~-~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 127 IALVDAVH-ADEQM-NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp EEEEETTT-HHHHH-HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred EEEEEHHH-HHHHH-hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 34445543 22322 379999999999999999999988 999 4555555544 579999999754444
Q ss_pred hhc
Q 007982 261 GVC 263 (582)
Q Consensus 261 ~~~ 263 (582)
.+.
T Consensus 194 ~l~ 196 (318)
T 1nij_A 194 LLF 196 (318)
T ss_dssp GGS
T ss_pred HHh
Confidence 443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-13 Score=130.49 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHH-HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 210 LAR-ALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 210 LAr-aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
.++ +++.+|++++|||||+++|.++...+.+.|.....- +.++|.. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 566 788899999999999999998888888777654221 2345621 56899887753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-12 Score=142.87 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=94.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee--e--eechH--------------HHHHHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA--V--ISCDE--------------ERLKLEKEAE 147 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~--~--i~~~~--------------~~~~~~~~~~ 147 (582)
.++++++|.+++|+.++|+||||||||||+++|+++.+++.+.+.. . +.... ....+.....
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4678899999999999999999999999999999988876553321 0 00000 0001111111
Q ss_pred HhccccCC-------CcchHHHHHHHHH-cCC------hhHHHHHHHHHHH-hCCCChhhh---h---ccCCCCChhHHH
Q 007982 148 ILGAQEDG-------GGEQLERVYERLE-ALD------ASTAEKRAAEILY-GLGFNKTMQ---A---KKTRDFSGGWRM 206 (582)
Q Consensus 148 ~~~~~~~~-------~~~~~~~~~~~l~-~~~------~~~~~~~~~~~l~-~lgl~~~~~---~---~~~~~LSGGqrq 206 (582)
....+.+. .......++..+. +.. .......+..+.. .+++...+. + .....+||||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 11111110 1111222222222 110 1112222222221 133332211 1 234568999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEE--EecCHHHHHhhcC
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVV--ISHSQDFLNGVCT 264 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvii--vsHd~~~~~~~~d 264 (582)
|+++|. + | |+|||+.+...+.+.|.++ +.|+++ +||+++++...|+
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 987751 1 7 9999998877666666555 568775 8999999988874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.8e-11 Score=121.08 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=87.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechH----HHHHHHHHHHHhc--cccCC-CcchHHHHHHHH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE----ERLKLEKEAEILG--AQEDG-GGEQLERVYERL 167 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~l 167 (582)
.++|++++|+||||||||||+++|+++..++.+.+.. ...+. ....+......++ +.... .......+++.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l-~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI-AASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE-EEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE-EeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3689999999999999999999999988776554321 11111 1111111222222 11111 111112222222
Q ss_pred HcCChhHHHHHHH-HHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcC
Q 007982 168 EALDASTAEKRAA-EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFD 246 (582)
Q Consensus 168 ~~~~~~~~~~~~~-~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 246 (582)
.. .. ..... -+++..|..+ .....+.+|| .+++++..++.+++||.+|. .| ....+..+-+..+
T Consensus 205 ~~---~~-~~~~d~vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~--~~~~~~~~~~~~~ 269 (328)
T 3e70_C 205 QH---AK-ARGIDVVLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NA--IVEQARQFNEAVK 269 (328)
T ss_dssp HH---HH-HHTCSEEEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSC
T ss_pred HH---HH-hccchhhHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcC
Confidence 10 00 00000 0122233321 1122233333 48999999999999996554 33 2333333334568
Q ss_pred cEEEEEecCH---------HHHHhhcCeEEEEeCCeE
Q 007982 247 RILVVISHSQ---------DFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 247 ~tviivsHd~---------~~~~~~~d~i~~l~~G~i 274 (582)
.|+|++||.. ..+....-.|.++..|+-
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 8999999953 345556667888888764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-11 Score=124.10 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=33.0
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHH
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~ 234 (582)
.+...+||||+||+++|++...+|+|||+||||++||+..
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 3457899999999999843333999999999999999853
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-12 Score=137.22 Aligned_cols=144 Identities=22% Similarity=0.170 Sum_probs=82.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee---ee----------chHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV---IS----------CDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~---i~----------~~~~ 138 (582)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|.++.+++.+.+... +. +...
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 35566677666666677777 53 7899999999999999999999998776654432110 00 0000
Q ss_pred H-HHHHHHHHHhccccCCCc-----chHHHHHHHH----Hc------CChhHHHHHHHHHHHhCCCChhhhhccCCCCCh
Q 007982 139 R-LKLEKEAEILGAQEDGGG-----EQLERVYERL----EA------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSG 202 (582)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l----~~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSG 202 (582)
. ..+.........+.+... .....+...+ .. +...... .+...|..+|+... ..+..|||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHH---HHHHHEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHH---HHHHHHHH
Confidence 0 011111111111222210 0111222111 11 1111112 23335677888753 26789999
Q ss_pred hHHHHHHHHHHHhcCCCceee
Q 007982 203 GWRMRIALARALFINPTILLL 223 (582)
Q Consensus 203 GqrqRv~LAraL~~~P~lLlL 223 (582)
||+|| |||+|+.+|+++.-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999998763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-10 Score=117.77 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=41.1
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHH-HhhcCeEEE
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFL-NGVCTNIIH 268 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~-~~~~d~i~~ 268 (582)
+..+|+++|+|||++ ||+.+...|.+.|.+. +.++|++||+.+.+ ..+.+|+.+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLL 187 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEE
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceE
Confidence 788999999999999 9999999999999876 46899999996543 334445433
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-11 Score=114.89 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=58.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HH-----HHHH-HHhc----cccCCCcchHHHHHHHH
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KL-----EKEA-EILG----AQEDGGGEQLERVYERL 167 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~-----~~~~-~~~~----~~~~~~~~~~~~~~~~l 167 (582)
++++|+|+||||||||+++|.++..+.+.. .+.+.+++... .+ .... ..++ ...+..... +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~-~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~-------i 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLR-VAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF-------I 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCC-EEEEEC------------CHHHHHHHHTCEEEEECSSEEEE-------E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCc-eEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE-------E
Confidence 589999999999999999999887664211 23333333221 11 0111 1222 111111000 0
Q ss_pred HcCChhHHHHHHHHHHHh-C-CCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 168 EALDASTAEKRAAEILYG-L-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~-l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
...+ .+....+.+++.. + |++.. . ...|||||+||++||||++.+|++.
T Consensus 75 ~~~~-~~~~a~l~~~i~~~l~g~dt~-i---~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 75 RRVS-EEEGNDLDWIYERYLSDYDLV-I---TEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp EECC-HHHHTCHHHHHHHHTTTCSEE-E---EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ecCC-hhhhhCHHHHHHhhCCCCCEE-E---ECCcCCCCCcEEEEEecccCCCccC
Confidence 0000 0101134445444 3 44322 2 2349999999999999999999884
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-12 Score=134.13 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=99.1
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhC------------CCCCCCcEEEEcCce------------eE---EEechhhhhh
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTG------------DLVPLDGMVRRHNHL------------RI---AQFHQHLAEK 442 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~G------------l~~p~~G~i~~~~~~------------~~---~~~~q~~~~~ 442 (582)
+..|.+++|+|+||||||||++.|+| ...|+.|.|...+.. .+ .++.+...
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG-- 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG-- 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc--
Confidence 56899999999999999999999999 567888988775410 11 12222211
Q ss_pred cCCcccHHHHHHhcCCCChHHHHHHHHHh-------cCCCCccccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeCCC
Q 007982 443 LDMDMSALQYMIKEYPGNEEEKMRAAIGR-------FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP--HMLLLDEPT 513 (582)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lLlLDEPt 513 (582)
+....+..+. . ...+...+.. +...+ ..++..+||+. +| +++++|||+
T Consensus 95 l~~~~s~~e~-------L-~~~fl~~ir~~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildeel 151 (392)
T 1ni3_A 95 LTKGASTGVG-------L-GNAFLSHVRAVDAIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDEL 151 (392)
T ss_dssp GCCCCCSSSS-------S-CHHHHHHHTTCSEEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHHH
T ss_pred cccCCcHHHH-------H-HHHHHHHHHHHHHHHHHHhccc---cceeeeecccc------------Ccchhhhhchhhh
Confidence 1111110000 0 0011111111 11111 23344566653 89 999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEE-EEeCC-eEEEEcCCHHHH
Q 007982 514 NHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIW-VCENQ-AVTRWEGDIMDF 570 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~~~~ 570 (582)
.++|+.......+.+... +.|+ ++|+...+..+|+++. +|++| +++ +.|++.+-
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~~~~ 211 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI-RKGDWSNR 211 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG-GGSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee-ecCCCCHH
Confidence 999999998888887765 3454 3999999999999999 89999 775 34655443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-10 Score=122.60 Aligned_cols=174 Identities=11% Similarity=0.089 Sum_probs=103.6
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEEEcCc-eeEEEechhh-hhhcCCcccHHHHHHhc-
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-MVRRHNH-LRIAQFHQHL-AEKLDMDMSALQYMIKE- 456 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~i~~~~~-~~~~~~~q~~-~~~~~~~~~~~~~~~~~- 456 (582)
..|+++...+.+|+++.|.|++|+|||||+..|++...+..| .|.+... .....+.+.+ ....... . ..+...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~--~-~~l~~g~ 267 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNIN--A-QNLRTGK 267 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCC--H-HHHHTSC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC--H-HHHhcCC
Confidence 457777778999999999999999999999999987665444 3322110 0000000000 0000111 0 111111
Q ss_pred CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH--------HHHHHHHH
Q 007982 457 YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDI--------ETIDSLAE 526 (582)
Q Consensus 457 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~--------~~~~~l~~ 526 (582)
....+..++.++++.++........+ ..+|.++.+ ..++.+. .+|+++|+|+++...+. .....+.+
T Consensus 268 l~~~~~~~~~~a~~~l~~~~l~i~d~-~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~ 344 (454)
T 2r6a_A 268 LTPEDWGKLTMAMGSLSNAGIYIDDT-PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISR 344 (454)
T ss_dssp CCHHHHHHHHHHHHHHHSSCEEEECC-TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHH
Confidence 11112234455555554433333333 579999987 4556555 68999999999998743 22234444
Q ss_pred HHH----hcCceEEEEec---------C--HH--------HHHhhcCEEEEEeCCeE
Q 007982 527 ALN----EWDGGLVLVSH---------D--FR--------LINQVAHEIWVCENQAV 560 (582)
Q Consensus 527 ~l~----~~~~tvi~vsH---------d--~~--------~~~~~~d~i~~l~~G~i 560 (582)
.|+ +++.+||+++| | +. .+.+.||.|++|..+..
T Consensus 345 ~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 345 SLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 443 55789999999 3 22 57789999999986554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-10 Score=121.12 Aligned_cols=120 Identities=23% Similarity=0.143 Sum_probs=70.6
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCCCceeeeeechHHHHHHHHHHHHhccccCC-CcchHHHHHH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-SDMSSLEAVISCDEERLKLEKEAEILGAQEDG-GGEQLERVYE 165 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (582)
++++++. .+|++++|+||||||||||+|+|.|... +..+.+... .+.... ......+...+.. .......+.+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~---~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV---SGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc---CCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 4555554 3799999999999999999999999887 665443211 010000 0000011111111 0110111111
Q ss_pred -HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 166 -RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 166 -~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
.+..++.......+.++++.+|+.. +.++.+.+|| ||+||++||+++
T Consensus 281 ~~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FGLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 0112344555667888999999974 5688999999 999999999875
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=100.28 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHHhcCceEEEEecCHHH--------HHhhcCEEEEEeC
Q 007982 502 RQPHMLLLDEPTNHL--DIETI----DSLAEALNEWDGGLVLVSHDFRL--------INQVAHEIWVCEN 557 (582)
Q Consensus 502 ~~p~lLlLDEPt~~L--D~~~~----~~l~~~l~~~~~tvi~vsHd~~~--------~~~~~d~i~~l~~ 557 (582)
.+|+++++|+|+..+ |+... ..+.+.+++.+.+||+++|.... +.++||.|+.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55333 23344455668899999998776 5688999999863
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=110.71 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=85.6
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (582)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++...+..+.+. .+..+........
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~-l~~~d~~~~~~~~-------- 143 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL-LVAADTQRPAARE-------- 143 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE-EEECCSSCHHHHH--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-EecCCcccHhHHH--------
Confidence 55678888887543 788888 8999999999999999999999987765433321 1222211100000
Q ss_pred cCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC-CCCCC
Q 007982 153 EDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP-TNHLD 231 (582)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP-t~~LD 231 (582)
.+ ..+.+..|++- .. .....+-.+-+|.+|+++...+++++|+||| +.++|
T Consensus 144 -------------ql------------~~~~~~~~l~~-~~--~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d 195 (295)
T 1ls1_A 144 -------------QL------------RLLGEKVGVPV-LE--VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQID 195 (295)
T ss_dssp -------------HH------------HHHHHHHTCCE-EE--CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCC
T ss_pred -------------HH------------HHhcccCCeEE-EE--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccc
Confidence 00 00112234431 10 0011233455789999998899999999999 99999
Q ss_pred HHHHHHHHHHHhhc
Q 007982 232 LEACVWLEETLKKF 245 (582)
Q Consensus 232 ~~~~~~l~~~l~~~ 245 (582)
......+..+....
T Consensus 196 ~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 196 EPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 98888887776553
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-12 Score=133.33 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=98.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCC-------cEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYG-------RRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~G-------e~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~ 143 (582)
.++.++++..|+...+++++++.+.+| +.++|+||||+|||||+++|++..........+.+........ ..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 466778888888888999999999887 8999999999999999999997652211111111112222111 10
Q ss_pred HHH--HHhccccCCC---cchHHHHHHHHHcCC------hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 144 KEA--EILGAQEDGG---GEQLERVYERLEALD------ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 144 ~~~--~~~~~~~~~~---~~~~~~~~~~l~~~~------~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
... ..+.+.++.. ....+.++..++... .......+...+..+++.. ..+.+..||+|++||+.++
T Consensus 98 ~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp HHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTTCSEE-
T ss_pred HHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHhcCce-
Confidence 000 0111111100 112222332232211 1122234455566676643 4567889999999998655
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCe
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTN 265 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~ 265 (582)
.+||+.+...+.++|++.... .-++|+.+.+..+|++
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred ---------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 778887777777777653110 1147898888887765
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-12 Score=129.87 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=53.7
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEE-------------------ecCCEEEEEcCCCCcHHHHHHHHhCCCC--CCCcE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGV-------------------DLDSRVALVGPNGAGKSTLLKLMTGDLV--PLDGM 423 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i-------------------~~Ge~~aivG~NGsGKSTLl~ll~Gl~~--p~~G~ 423 (582)
.+|++++|++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|.
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3578999999993 5889999988 8999999999999999999999999998 99999
Q ss_pred EEE
Q 007982 424 VRR 426 (582)
Q Consensus 424 i~~ 426 (582)
|..
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=100.20 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=41.6
Q ss_pred cCCCceeecCCCCCC--CHHHH----HHHHHHHhhcCcEEEEEecCHHH--------HHhhcCeEEEEeC
Q 007982 216 INPTILLLDEPTNHL--DLEAC----VWLEETLKKFDRILVVISHSQDF--------LNGVCTNIIHMQN 271 (582)
Q Consensus 216 ~~P~lLlLDEPt~~L--D~~~~----~~l~~~l~~~~~tviivsHd~~~--------~~~~~d~i~~l~~ 271 (582)
.+|+++++|+|++.+ |+... ..+.+.+++.+.|||+++|.... +..+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55322 23344455678899999998765 5678999999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-10 Score=119.05 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=70.5
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cCc----------e-eEEEechhhhhh-cC--CcccHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HNH----------L-RIAQFHQHLAEK-LD--MDMSALQY 452 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~~----------~-~~~~~~q~~~~~-~~--~~~~~~~~ 452 (582)
+-.|++++|+||||||||||+++|+ ++.|++|.|.. .+. . .+++++|.+... +. ...++ ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4469999999999999999999999 99999999986 331 0 256776654211 01 12233 22
Q ss_pred HHh----------cC----C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 453 MIK----------EY----P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 453 ~~~----------~~----~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
+.. .+ + ......+.++++.++|.....+.++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 210 01 1 1123568999999999863334456799998889999986
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-10 Score=120.46 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCCChhHHHHHHHHHHHc--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 007982 483 MKNLSDGQRSRVVFAWLAY--R---------------QPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLI 545 (582)
Q Consensus 483 ~~~LSgGqkqrv~lAral~--~---------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 545 (582)
.+.+||||+|-.-+|.+.+ + .-.+++|||. +-+|.+.+...++++++++-.+|+++=+ .+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i 453 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI 453 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence 5789999999754444432 2 2358999999 9999999999999999999999999988 56
Q ss_pred HhhcCEEEEEe
Q 007982 546 NQVAHEIWVCE 556 (582)
Q Consensus 546 ~~~~d~i~~l~ 556 (582)
..++|.++.+.
T Consensus 454 ~p~v~~~~~~~ 464 (483)
T 3euj_A 454 SPERGTTYKLV 464 (483)
T ss_dssp CCSSSEEEECC
T ss_pred hhccCceEEEE
Confidence 66788887653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.87 E-value=8e-10 Score=112.81 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=72.9
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHc
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (582)
.++|...+|++++|+|+|||||||++..|++...+.++.+. .+..+..+.. .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~-lv~~D~~r~~---------------------a------ 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV-LAAADTFRAA---------------------A------ 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EEEECTTCHH---------------------H------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE-EEccccccHH---------------------H------
Confidence 34666778999999999999999999999987765433221 1222211000 0
Q ss_pred CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHH---HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI---ALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 170 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv---~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
.+.+..+++.+|++. +..+|||+.+++ +|++++..+|+++|+|||.. ......+++.|++
T Consensus 148 ------~eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~ 210 (306)
T 1vma_A 148 ------IEQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRK 210 (306)
T ss_dssp ------HHHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHH
Confidence 011223344455531 236789999999 99999999999999999974 3334444444443
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-10 Score=121.51 Aligned_cols=174 Identities=10% Similarity=0.075 Sum_probs=89.1
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHH--HHHHhccccCCC-cchH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEK--EAEILGAQEDGG-GEQL 160 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~--~~~~~~~~~~~~-~~~~ 160 (582)
-+++||++.+|++++|+|+||||||||+++|+++..++.+.+.. ...+..+. .+.. ....+.+..... ....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l-~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML-AAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE-ECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE-ecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 46899999999999999999999999999999988766554321 11111111 1111 112222221111 1111
Q ss_pred HHHHHHHHcCChhHHHHHHH-HHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh-cCCC-ceeecCCCCCCCHHHHHH
Q 007982 161 ERVYERLEALDASTAEKRAA-EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF-INPT-ILLLDEPTNHLDLEACVW 237 (582)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~-~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-~~P~-lLlLDEPt~~LD~~~~~~ 237 (582)
..+++.+... . ..... -+++..|..... ...+.+| +|++.+++++. ..|. +||...||+|.|.. ..
T Consensus 362 ~tV~e~l~~a---~-~~~~DvVLIDTaGrl~~~-~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ 430 (503)
T 2yhs_A 362 SVIFDAIQAA---K-ARNIDVLIADTAGRLQNK-SHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQ 430 (503)
T ss_dssp HHHHHHHHHH---H-HTTCSEEEECCCCSCCCH-HHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HH
T ss_pred HHHHHHHHHH---H-hcCCCEEEEeCCCccchh-hhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HH
Confidence 2222222100 0 00000 012223332111 1122233 47888888764 4564 55555599886554 23
Q ss_pred HHHHHhhcCcEEEEEecCHH---------HHHhhcCeEEEEeCCe
Q 007982 238 LEETLKKFDRILVVISHSQD---------FLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 238 l~~~l~~~~~tviivsHd~~---------~~~~~~d~i~~l~~G~ 273 (582)
+..+-...+.|.|++||--. .+..+.-.|.++..|.
T Consensus 431 ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 33333456789999999321 3333444566665553
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-12 Score=135.34 Aligned_cols=161 Identities=22% Similarity=0.257 Sum_probs=97.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecC-------CEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEcC-------
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLD-------SRVALVGPNGAGKSTLLKLMTGDL----VPLDGMVRRHN------- 428 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~G-------e~~aivG~NGsGKSTLl~ll~Gl~----~p~~G~i~~~~------- 428 (582)
++.++++..|+ ...+++++++.|..| +.++|+||||+|||||+++|+|.+ .|++|.+...+
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 34455555564 356888999999877 899999999999999999999988 66677654211
Q ss_pred ----ceeEEEechhhhhhcCCcccHHHHHHh---cCC-------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHH
Q 007982 429 ----HLRIAQFHQHLAEKLDMDMSALQYMIK---EYP-------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 429 ----~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv 494 (582)
...+.++++... +. .+..+.+.. .+. ......+...+..+++.. .. .++..||+|++||+
T Consensus 98 ~~~~~~~v~~iDE~~~--l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at-~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 98 TSLERGDVLFIDEIHR--LN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-AT-TRSGLLSSPLRSRF 171 (334)
T ss_dssp HHCCTTCEEEEETGGG--CC--HHHHHHHHHHHHTSCCCC---------------CCCEEEE-EE-SCGGGSCHHHHTTC
T ss_pred HHccCCCEEEEcchhh--cC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ec-CCcccCCHHHHHhc
Confidence 123566665421 11 133333221 111 111233445566677654 33 34579999999998
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCE
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~ 551 (582)
.++ .+||+.+.+.+.+.|++.... .-++|+.+.+..+|++
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 654 778888887777777654210 1147888877777764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-12 Score=129.02 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=81.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCcee-----------EEEechhhhhhcCCccc
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR-----------IAQFHQHLAEKLDMDMS 448 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~-----------~~~~~q~~~~~~~~~~~ 448 (582)
..+|++++|.+..| ++|+||||||||||+++|+|.+.+ |.|...+... +++++|... ...+..+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 34788899999999 999999999999999999999877 5666544211 111122110 0011111
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC------------CC
Q 007982 449 ALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN------------HL 516 (582)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~------------~L 516 (582)
+.+.+........... .+ .+... ....+.+|||||+||++|++++.++|++| |||+. --
T Consensus 108 ~~Deid~~~~~r~~~~----~~--~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 108 FFDEVDALCPRRSDRE----TG--ASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEETCTTTCC---------------CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred eeehhhhhhcccCCCc----ch--HHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 1111110000000000 00 01111 12334689999999999999999999985 99974 23
Q ss_pred CHHHHHHHHHHHHh
Q 007982 517 DIETIDSLAEALNE 530 (582)
Q Consensus 517 D~~~~~~l~~~l~~ 530 (582)
|...+..|.+.+.+
T Consensus 179 ~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 179 PPADRLAILKTITK 192 (274)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 56777777776643
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-09 Score=107.93 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=82.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHH
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTA 175 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 175 (582)
.+|++++|+|+|||||||++..|++...++.|.--..+..+..+. ...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~-----------------~a~--------------- 150 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI-----------------AAV--------------- 150 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST-----------------THH---------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc-----------------hHH---------------
Confidence 479999999999999999999999877643231111222221100 000
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc-----CcEEE
Q 007982 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-----DRILV 250 (582)
Q Consensus 176 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi 250 (582)
+....+.+.+|++.. . ..+ +...+.+|++ +.+|+++|+| |+|+|+.....+.++.+-. ..+++
T Consensus 151 -eqL~~~~~~~gl~~~-~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~l 218 (296)
T 2px0_A 151 -EQLKTYAELLQAPLE-V-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFL 218 (296)
T ss_dssp -HHHHHHHTTTTCCCC-B-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEE
T ss_pred -HHHHHHHHhcCCCeE-e-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEE
Confidence 011112233444311 0 112 3345666665 4999999999 8999987665544433221 12344
Q ss_pred EE--ecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 251 VI--SHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 251 iv--sHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
++ +|+.+.+.++|+++..+..+.++.
T Consensus 219 Vl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 219 VLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp EEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred EEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 55 999999999999887777677754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.79 E-value=8.5e-09 Score=111.21 Aligned_cols=177 Identities=9% Similarity=0.016 Sum_probs=100.3
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeee--chHHHHHHHHHHHHhccccCCCcchHHH
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVIS--CDEERLKLEKEAEILGAQEDGGGEQLER 162 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (582)
...|+++..-+.+|+++.|.|++|+|||||+..|+.......+.-...+. ........+-........ ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~-------~~~ 262 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNIN-------AQN 262 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCC-------HHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC-------HHH
Confidence 34678887789999999999999999999999887543321110011112 112111111000111100 001
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh--cCCCceeecCCCCCCCH--------
Q 007982 163 VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF--INPTILLLDEPTNHLDL-------- 232 (582)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~--~~P~lLlLDEPt~~LD~-------- 232 (582)
+. -..+... ...++.+.+..++...... .....+|.++.+ +.++.+. .+|+++|+|+++...+.
T Consensus 263 l~--~g~l~~~-~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~ 336 (454)
T 2r6a_A 263 LR--TGKLTPE-DWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQ 336 (454)
T ss_dssp HH--TSCCCHH-HHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CH
T ss_pred Hh--cCCCCHH-HHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHH
Confidence 10 0011111 1223344444333222122 235689999887 5566665 68999999999998743
Q ss_pred HHHHHHHHHH----hhcCcEEEEEec---------C--HH--------HHHhhcCeEEEEeCCeE
Q 007982 233 EACVWLEETL----KKFDRILVVISH---------S--QD--------FLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 233 ~~~~~l~~~l----~~~~~tviivsH---------d--~~--------~~~~~~d~i~~l~~G~i 274 (582)
.....+...| ++++.+||+++| | +. .+...||.|++|..+..
T Consensus 337 ~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 337 QEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2223444444 356889999999 3 22 57789999999987654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.1e-12 Score=126.30 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-e-e-chHH-HHHHHHHHHHhccccCCCcc
Q 007982 83 HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-I-S-CDEE-RLKLEKEAEILGAQEDGGGE 158 (582)
Q Consensus 83 ~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i-~-~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (582)
....+|++++|.+++| ++|+||||||||||+++|++...+..-.+.+. + . +.+. ...+....+... ...+...
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 3456789999999999 99999999999999999998655421000000 0 0 0011 001111111000 0000000
Q ss_pred hHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC----------
Q 007982 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN---------- 228 (582)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~---------- 228 (582)
.++++ ..+........ .+......++.+.+|||||+||+.|++|+..+|++| |||+.
T Consensus 108 ~~Dei----d~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 108 FFDEV----DALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EEETC----TTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eeehh----hhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 00000 00000000000 011123446677899999999999999999999986 99864
Q ss_pred --CCCHHHHHHHHHHHhh
Q 007982 229 --HLDLEACVWLEETLKK 244 (582)
Q Consensus 229 --~LD~~~~~~l~~~l~~ 244 (582)
-.|...+..+++.+.+
T Consensus 175 ~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 175 VGLPPPADRLAILKTITK 192 (274)
T ss_dssp CCSCCHHHHHHHHHHHTT
T ss_pred eCCcCHHHHHHHHHHHHh
Confidence 3467888888776643
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-10 Score=122.27 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=58.4
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEE-
Q 007982 195 KKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNII- 267 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~- 267 (582)
..+..+||+. +| +++++|||++.+|+.......+.+... +.|+ ++|+...+..+|+++.
T Consensus 129 ~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~ 194 (392)
T 1ni3_A 129 AEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQ 194 (392)
T ss_dssp TCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHH
T ss_pred ceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHH
Confidence 4455577764 99 999999999999999998888887765 3454 3999999999999999
Q ss_pred EEeCC-eEEEEcCChh
Q 007982 268 HMQNK-QLKFYTGNFD 282 (582)
Q Consensus 268 ~l~~G-~i~~~~g~~~ 282 (582)
+|++| +++ +.|+++
T Consensus 195 ~L~~G~~~~-~~~~~~ 209 (392)
T 1ni3_A 195 YLTETKQPI-RKGDWS 209 (392)
T ss_dssp HHHTTCSCG-GGSCCC
T ss_pred HhccCCcee-ecCCCC
Confidence 99999 775 335543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-10 Score=120.18 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=96.2
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhc--CCCCCCCceeee-eechHHHHHHHHHHHHhccccCCCcchHHHHHHH
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGE--IEASDMSSLEAV-ISCDEERLKLEKEAEILGAQEDGGGEQLERVYER 166 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~--~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (582)
.+++++.++..+.|.|++||||||++++|.. +...+.+.+... +......... ...+.................
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~---~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV---YEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG---GTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh---hccCCcccceeecCHHHHHHH
Confidence 4678888999999999999999999999853 222222222211 1111111100 000000000011112222222
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChhh--hhccCCCCChhHHHHH----------HHHHHHhcCCC-ceeecCCCCCCCHH
Q 007982 167 LEALDASTAEKRAAEILYGLGFNKTM--QAKKTRDFSGGWRMRI----------ALARALFINPT-ILLLDEPTNHLDLE 233 (582)
Q Consensus 167 l~~~~~~~~~~~~~~~l~~lgl~~~~--~~~~~~~LSGGqrqRv----------~LAraL~~~P~-lLlLDEPt~~LD~~ 233 (582)
+.. ...+++.|. +++..+|+.+.. ..+....+||||+|+. .+|+++...|. ++++||+++.+|..
T Consensus 236 L~~-~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~ 313 (512)
T 2ius_A 236 LRW-CVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV 313 (512)
T ss_dssp HHH-HHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH
T ss_pred HHH-HHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh
Confidence 221 123455564 678888875321 1122346899998763 35667778898 89999999988832
Q ss_pred HHHHHHHHH-------hhcCcEEEEEecCHH-------HHHhhcCeEEE
Q 007982 234 ACVWLEETL-------KKFDRILVVISHSQD-------FLNGVCTNIIH 268 (582)
Q Consensus 234 ~~~~l~~~l-------~~~~~tviivsHd~~-------~~~~~~d~i~~ 268 (582)
. ..+.+.| +.+|.++|++||+++ ...++.+||.+
T Consensus 314 ~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 314 G-KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp H-HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred h-HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 2 2233322 234679999999987 45566666654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-10 Score=123.49 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=95.7
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhC--CCCCCCcEEEEcC---ce-eEEEechhhhhhcC-CcccH---HHHHH
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVRRHN---HL-RIAQFHQHLAEKLD-MDMSA---LQYMI 454 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G--l~~p~~G~i~~~~---~~-~~~~~~q~~~~~~~-~~~~~---~~~~~ 454 (582)
.+++++..+..+.|+|++||||||+++.|.. ++.++.|.+.... .. ....+. .+.+... .-... ...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-~lPhl~~~Vvtd~~~a~~~L- 236 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-GIPHLLTEVVTDMKDAANAL- 236 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-TCTTBSSSCBCSHHHHHHHH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-cCCcccceeecCHHHHHHHH-
Confidence 3678888999999999999999999999876 5555556664321 10 000000 0001000 00011 1111
Q ss_pred hcCCCChHHHHHHHHHhcCCCCcccc--CCCCCCChhHHHHH----------HHHHHHccCCC-EEEEeCCCCCCCHHH-
Q 007982 455 KEYPGNEEEKMRAAIGRFGLTGKAQV--MPMKNLSDGQRSRV----------VFAWLAYRQPH-MLLLDEPTNHLDIET- 520 (582)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqrv----------~lAral~~~p~-lLlLDEPt~~LD~~~- 520 (582)
........++ .+++..+|+.+.... .....+|+||+|+. .+|+++...|. ++++||++..+|...
T Consensus 237 ~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~ 315 (512)
T 2ius_A 237 RWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGK 315 (512)
T ss_dssp HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhH
Confidence 1000111222 367888888653221 11135889987753 34566677898 899999999988432
Q ss_pred -HHHHHHHH----HhcCceEEEEecCHH-------HHHhhcCEEEE
Q 007982 521 -IDSLAEAL----NEWDGGLVLVSHDFR-------LINQVAHEIWV 554 (582)
Q Consensus 521 -~~~l~~~l----~~~~~tvi~vsHd~~-------~~~~~~d~i~~ 554 (582)
...+...| +++|.++|++||++. ...++..||.+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 12222222 234668999999987 56677778765
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.9e-10 Score=112.80 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=57.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cCc-----------eeEEEechhhhh-------------
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HNH-----------LRIAQFHQHLAE------------- 441 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~~-----------~~~~~~~q~~~~------------- 441 (582)
++..|++++|+||||||||||+++|+|+..|++|.|.. .+. ..+++++|.+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999986 321 024666665421
Q ss_pred -hcCCcccHHHHHHhc---CCCChHHHHHHHHHhcCCCCccccCCCCCCCh
Q 007982 442 -KLDMDMSALQYMIKE---YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSD 488 (582)
Q Consensus 442 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 488 (582)
.+.+..++ +++... .......++.++|+.+||.....++.+..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 12223333 332211 01122356889999999963322333467774
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-08 Score=110.35 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=42.3
Q ss_pred EeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 75 v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
+.+++.. +..+|+++||+|++ ++++|+|||||||||||++|+|+.+|+.|.
T Consensus 9 l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 9 FRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp EEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred eeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 4444432 35679999999999 999999999999999999999988776554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-09 Score=101.51 Aligned_cols=178 Identities=11% Similarity=0.090 Sum_probs=71.1
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh-CCC------------CCCCcEEEEcCceeEEEechhhhhhcCCcc
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-GDL------------VPLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~-Gl~------------~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~ 447 (582)
....++||++.+|++++|+||||||||||+++|+ |++ +|..|.+ .+ ..|.++.... + ...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g---~~~~~~~~~~-~-~~~ 87 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG---KDYYFVDREE-F-LRL 87 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT---TTBEECCHHH-H-HHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC---CeEEEecHHH-h-hhh
Confidence 3567899999999999999999999999999999 998 4444433 11 1122221110 0 000
Q ss_pred cHHHHHH------hcCCCChHHHHHHHHHhcCCCCccccCCCCCCChh--HHHHH-HHH-HHHccCCCEEEEeCCCCCCC
Q 007982 448 SALQYMI------KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDG--QRSRV-VFA-WLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 448 ~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG--qkqrv-~lA-ral~~~p~lLlLDEPt~~LD 517 (582)
+..+.+. ..........+.++++.-.. .....+ +.|- -++++ .-+ ..++..|+..+|+|++...|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~---~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~ 162 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVID---WQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRR 162 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECC---HHHHHHHHHHSGGGEEEEEEECSCHHHHHHC-----
T ss_pred hhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcC---HHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC
Confidence 0000000 00000011223444433211 011111 1111 12322 111 22356778888899999998
Q ss_pred HHHHHHHHHHHHh----c----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 518 IETIDSLAEALNE----W----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 518 ~~~~~~l~~~l~~----~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
..+.+.+.+.|.. . ...+|+++||++.+.+-+++++....++.. ..++..++.
T Consensus 163 ~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~ 223 (231)
T 3lnc_A 163 ADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELL 223 (231)
T ss_dssp ---------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHh
Confidence 7776655544432 1 236888899988877766666544444432 234444444
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-08 Score=96.21 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
+.+.+|++++.+|+++++| ||++|..++..+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4477899999999999999 999999999999888754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=99.01 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=82.2
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.+.+|+++.|.||||||||||+..++.......|.+. |+.... ... .. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl--------yi~~E~----~~~---------------~~----~ 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA--------FIDAEH----ALD---------------PE----Y 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE--------EEESSC----CCC---------------HH----H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE--------EEECCC----CcC---------------HH----H
Confidence 4789999999999999999998888765443333332 222110 000 00 1
Q ss_pred HHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHcc--CCCEEEEeCCCCCC----------CH----HH---HHHHHH-
Q 007982 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAYR--QPHMLLLDEPTNHL----------DI----ET---IDSLAE- 526 (582)
Q Consensus 469 l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~~--~p~lLlLDEPt~~L----------D~----~~---~~~l~~- 526 (582)
..++|+... ....+ .+.. +-+.++++++. +|+++|+|||++.+ |. .. ...+.+
T Consensus 106 a~~lG~~~~~l~i~~~---~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L 180 (349)
T 2zr9_A 106 AKKLGVDTDSLLVSQP---DTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 180 (349)
T ss_dssp HHHTTCCGGGCEEECC---SSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHeEEecC---CCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHH
Confidence 233444311 11112 2333 34567777765 49999999999998 32 11 122222
Q ss_pred --HHHhcCceEEEEecCHH----------------HHHhhcCEEEEEeCCeEE
Q 007982 527 --ALNEWDGGLVLVSHDFR----------------LINQVAHEIWVCENQAVT 561 (582)
Q Consensus 527 --~l~~~~~tvi~vsHd~~----------------~~~~~~d~i~~l~~G~i~ 561 (582)
.+++++.+||+++|-.. .+..+||.++.+..+++.
T Consensus 181 ~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 181 TGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 23566889999999653 256789999888766554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-09 Score=109.72 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=55.4
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cCc--------e--eEEEechhhhhhc-CC-cccHHHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HNH--------L--RIAQFHQHLAEKL-DM-DMSALQYMI 454 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~~--------~--~~~~~~q~~~~~~-~~-~~~~~~~~~ 454 (582)
+.+|++++|+||||||||||+++|+|+..|.+|.|.. .+. . ..+++.|.+.... .+ ..++ +.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 4579999999999999999999999999999999975 221 0 1466766542111 11 2333 3321
Q ss_pred hc------------CC-----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 455 KE------------YP-----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 455 ~~------------~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
.. +. ......+.++++.++|........ ..|+.|++||
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-~~lls~~~~~ 303 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-VEFMTEIKDR 303 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-HHHHHHHhhc
Confidence 10 11 112346889999999976433333 4677787763
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-08 Score=95.51 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 474 (582)
+++|+|+|||||||+.++|+++ |...... ..+...+. .+ ....+.++.+.+|.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~------------~~--~~~~~~~i~~~~g~ 56 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV------------AK--DSPLLSKIVEHFGA 56 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT------------CS--SCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc------------cC--ChHHHHHHHHHhCH
Confidence 6899999999999999999983 3222111 01100000 01 11234566667775
Q ss_pred CCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHH--HhhcCE
Q 007982 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-DGGLVLVSHDFRLI--NQVAHE 551 (582)
Q Consensus 475 ~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~~--~~~~d~ 551 (582)
.. -.|.|+.+|..++..+..+|..+.++ ++.++|.....+.+.+... +.+||+.+|.+.+. ...||.
T Consensus 57 ~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~ 126 (206)
T 1jjv_A 57 QI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDR 126 (206)
T ss_dssp TC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSE
T ss_pred HH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCE
Confidence 32 13678999999999988888654333 3456677777777777654 45788888987665 678999
Q ss_pred EEEEe
Q 007982 552 IWVCE 556 (582)
Q Consensus 552 i~~l~ 556 (582)
+++++
T Consensus 127 vi~l~ 131 (206)
T 1jjv_A 127 ILVVD 131 (206)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99885
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=98.09 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcC--CCceeecCCCCCC----------CH----HH---HHHHHH---HHhhcCcEEEEEecCHH------
Q 007982 206 MRIALARALFIN--PTILLLDEPTNHL----------DL----EA---CVWLEE---TLKKFDRILVVISHSQD------ 257 (582)
Q Consensus 206 qRv~LAraL~~~--P~lLlLDEPt~~L----------D~----~~---~~~l~~---~l~~~~~tviivsHd~~------ 257 (582)
+-+.++++++.+ |+++|+|||++.+ |+ .. ...+.+ .+++++.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445678888755 9999999999998 32 11 122222 23667899999999643
Q ss_pred ----------HHHhhcCeEEEEeCCeEE
Q 007982 258 ----------FLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 258 ----------~~~~~~d~i~~l~~G~i~ 275 (582)
.+..+||.++.++.+++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeeee
Confidence 256789999999877654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-09 Score=104.91 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=35.8
Q ss_pred ceEEeee-EEEE-CCeeeeEeeeEEEeC---CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 72 DIRIESL-SVTF-HGHDLIVDSELELNY---GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 72 ~i~v~nl-s~~y-~~~~il~~vsl~i~~---Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+|+++|+ +++| ++..+|+++||+|.+ |++++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7999999 9999 778899999999999 9999999999999999999998643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.5e-09 Score=104.14 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCeEEEEEE-EEEecCCceeeEeeeEEEec---CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 364 PPVLQFVEV-TFGYTPDNLIYKNLDFGVDL---DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 364 ~~~l~~~~l-~~~y~~~~~~l~~vsl~i~~---Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++|+++|+ +|+|.+...+|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 99994346799999999999 9999999999999999999999855
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=111.61 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=93.5
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC-cEEEEcC------ceeEEEechhhhhhcCC------
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD-GMVRRHN------HLRIAQFHQHLAEKLDM------ 445 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~-G~i~~~~------~~~~~~~~q~~~~~~~~------ 445 (582)
...+++++++.+..|+.++|+||||+|||||+++|++++.+.. |.+...+ ...+.++++.....+..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~ 125 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKA 125 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhh
Confidence 4568899999999999999999999999999999999999887 5554432 12355554332110000
Q ss_pred --------------cccHHHHHH-hcCCC-------ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 446 --------------DMSALQYMI-KEYPG-------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 446 --------------~~~~~~~~~-~~~~~-------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
..+...++. ..... ........+++.+.... ...+.+|+|++|++..++....+
T Consensus 126 ~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~----~~~g~~~~g~~~~i~~g~~~~a~ 201 (604)
T 3k1j_A 126 KSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP----FQSGGLGTPAHERVEPGMIHRAH 201 (604)
T ss_dssp HHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC----C----CCCCGGGGEECCHHHHTT
T ss_pred ccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech----hhcCCccccccccccCceeeecC
Confidence 000000000 00000 00011223333332211 11257999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
+.+|+|||... |++.....|.+.|.+
T Consensus 202 ~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 202 KGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999988 899999999999974
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-05 Score=97.78 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=76.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.+.+|+.+.|.||+|+|||||+..++.......|. +.|+.-... ... . .
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~--------VlyiS~Ees------~~q---------------l--~ 776 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--------CAFIDAEHA------LDP---------------I--Y 776 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--------EEEECTTSC------CCH---------------H--H
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC--------eEEEeccch------HHH---------------H--H
Confidence 38999999999999999999999988765433232 223221100 000 0 0
Q ss_pred HHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCC-HH------------HHHHH-------
Q 007982 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLD-IE------------TIDSL------- 524 (582)
Q Consensus 469 l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD-~~------------~~~~l------- 524 (582)
..++|+... ....+ . +. + +-...++.++ .+|+++++|+.+.-.. .+ ....+
T Consensus 777 A~~lGvd~~~L~i~~~-~--~l-e-ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~L 851 (1706)
T 3cmw_A 777 ARKLGVDIDNLLCSQP-D--TG-E-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 851 (1706)
T ss_dssp HHHTTCCGGGCEEECC-S--SH-H-HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHcCCChhheEEecC-C--cH-H-HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHH
Confidence 223343211 11111 1 22 2 3344444443 5899999999987652 10 11122
Q ss_pred HHHHHhcCceEEEEecC----------------HHHHHhhcCEEEEEeC
Q 007982 525 AEALNEWDGGLVLVSHD----------------FRLINQVAHEIWVCEN 557 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd----------------~~~~~~~~d~i~~l~~ 557 (582)
...+++++.+||+++|- -..+.+.||-++.+..
T Consensus 852 k~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 852 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 900 (1706)
T ss_dssp HHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEe
Confidence 22345678899999882 1246778898888853
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-08 Score=96.76 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=22.9
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh-cCCC
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG-EIEA 123 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~-~~~~ 123 (582)
+...++||++++|++++|+||||||||||+++|+ ++.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999 8863
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-09 Score=110.59 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=48.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEE-------------------eCCcEEEEECCCCCcHHHHHHHHhcCCC--CCCCc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELEL-------------------NYGRRYGLLGLNGCGKSTLLTAIGEIEA--SDMSS 128 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i-------------------~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~~~~~ 128 (582)
+|+++||++.|+ +++++++|.+ .+|+++||+||||||||||+++|+++.. ++.+.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 688999999994 7899999988 8999999999999999999999999766 55544
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-09 Score=103.51 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=41.9
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
.|+++|+...|. . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+.+
T Consensus 9 ~l~l~~~~~~~~-------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE-------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC-------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 578888765442 1 566666 89999999999999999999999999999886543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-10 Score=114.64 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=42.4
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+++++.+.|++..++++++|.+++| ++|+||||||||||+++|++...
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 34567777787778899999999999 99999999999999999997654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-10 Score=116.83 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=76.7
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC-c-----eeEEEechhhhhhcCCcccHHHHHH
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN-H-----LRIAQFHQHLAEKLDMDMSALQYMI 454 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~-~-----~~~~~~~q~~~~~~~~~~~~~~~~~ 454 (582)
.+++++++++.+|++++|+||||||||||+++|+|.+ .|.+.... . ..+++++|.+.. +..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~-l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCE-EETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHH-HHHHHHHHHHHH
Confidence 5789999999999999999999999999999999853 57765411 0 012222222110 000000000000
Q ss_pred hcCCCCh----HHHHHHHHH---------------hcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE-EeCCCC
Q 007982 455 KEYPGNE----EEKMRAAIG---------------RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL-LDEPTN 514 (582)
Q Consensus 455 ~~~~~~~----~~~~~~~l~---------------~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl-LDEPt~ 514 (582)
....... ...+...+. ..-+...........+++|.++|+..+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0000000 122333442 11111112223456799999999998888889999998 999997
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-08 Score=91.83 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=26.4
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
|+++.+|++++|+||||||||||+++|+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67888999999999999999999999998764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-07 Score=89.29 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=75.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHH
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA 179 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (582)
+++|+|+|||||||+.++|+++-. ..+..+. . ...+.. ... ..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~-------~~id~d~--~-----~~~~~~---~~~-------------------~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGV-------PLVDADV--V-----AREVVA---KDS-------------------PLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTC-------CEEEHHH--H-----HHHTTC---SSC-------------------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC-------cccchHH--H-----HHHHcc---CCh-------------------HHH
Confidence 689999999999999999988311 1122111 1 001100 000 112
Q ss_pred HHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc-CcEEEEEecCHHH
Q 007982 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-DRILVVISHSQDF 258 (582)
Q Consensus 180 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tviivsHd~~~ 258 (582)
.++.+.+|.. . -.+.|+.+|..+++.++.+|..+..+ ++.++|..+..+.+.+... +.++|+.+|.+.+
T Consensus 48 ~~i~~~~g~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e 117 (206)
T 1jjv_A 48 SKIVEHFGAQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIE 117 (206)
T ss_dssp HHHHHHHCTT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTT
T ss_pred HHHHHHhCHH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhh
Confidence 3344444432 1 13678999999999999998766554 3456777777777777654 4578888898766
Q ss_pred H--HhhcCeEEEEe
Q 007982 259 L--NGVCTNIIHMQ 270 (582)
Q Consensus 259 ~--~~~~d~i~~l~ 270 (582)
. ...||.+++++
T Consensus 118 ~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 118 NKLTALCDRILVVD 131 (206)
T ss_dssp TTCGGGCSEEEEEE
T ss_pred cCcHhhCCEEEEEE
Confidence 4 67899988885
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-07 Score=88.05 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=35.4
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~ 423 (582)
++++|.+.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6889999998 99999999999999999999988877664
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.5e-08 Score=91.62 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=26.7
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-09 Score=106.93 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=66.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHH--HHHHhc--cccCC--------CcchH
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEK--EAEILG--AQEDG--------GGEQL 160 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~--~~~~~~--~~~~~--------~~~~~ 160 (582)
++..|++++|+||||||||||+|+|. +..++.|.+..... .+.... ... ....++ ++.+. ....
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~-~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTE-RGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC----------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccC-CCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34469999999999999999999999 87776554432000 111000 000 000011 11110 0011
Q ss_pred HHH---HH-------HHHc-CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 161 ERV---YE-------RLEA-LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 161 ~~~---~~-------~l~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
+++ +. .+.. ....+...++.++++.++|.....++++..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 10 0111 1222334578999999999864678899999999999999986
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-07 Score=88.73 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
...|++++.+|+++++| |+++|...+..+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999888877654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-07 Score=106.52 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=58.5
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC-CCCHHHHHHHHHHHhhc---CcEEEE-EecCHHHHHhhcCeEEEE
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTN-HLDLEACVWLEETLKKF---DRILVV-ISHSQDFLNGVCTNIIHM 269 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvii-vsHd~~~~~~~~d~i~~l 269 (582)
..+.-+|.|+.+|..++++++.++++||+|||.. +||......++..+... ..+|++ .||+.+.+..+++...++
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi 265 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEE
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcc
Confidence 4567789999999999999999999999999997 99987766555555433 246666 499988888888754333
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-07 Score=105.09 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhc--C-ceEEE-EecCHHHHHhhcCE
Q 007982 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN-HLDIETIDSLAEALNEW--D-GGLVL-VSHDFRLINQVAHE 551 (582)
Q Consensus 482 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~--~-~tvi~-vsHd~~~~~~~~d~ 551 (582)
.+.-+|+|+.+|..+++.++.++++||+|||.. +||......+.+.+... . .+|++ +|||.+.+.++++.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 355789999999999999999999999999996 99988766665555443 2 35666 49998888887764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-07 Score=100.31 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=72.3
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
..+.++++.++.| +.|+||+|+|||||+++|++..... .+.+....
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~------f~~is~~~-------------------------- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP------FFHISGSD-------------------------- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC------EEEEEGGG--------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC------eeeCCHHH--------------------------
Confidence 3556667777777 8899999999999999998632110 01110000
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC----------CCCCHHHH
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT----------NHLDLEAC 235 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt----------~~LD~~~~ 235 (582)
+....++ +|++++|..+++|....|.||++||+. ++.|....
T Consensus 85 --------------------------~~~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~ 136 (476)
T 2ce7_A 85 --------------------------FVELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDERE 136 (476)
T ss_dssp --------------------------TTTCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHH
T ss_pred --------------------------HHHHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHH
Confidence 0000000 267888999999999999999999994 46676655
Q ss_pred HHHHHHHhhc-------CcEEEEEecCHHHHH
Q 007982 236 VWLEETLKKF-------DRILVVISHSQDFLN 260 (582)
Q Consensus 236 ~~l~~~l~~~-------~~tviivsHd~~~~~ 260 (582)
..+.++|..+ +..||.+||+.+.+.
T Consensus 137 ~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 137 QTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 5555555322 457899999987654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-07 Score=85.99 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.5
Q ss_pred eee--EeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 86 DLI--VDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 86 ~il--~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
..+ ++++|++.+| +++|+||||||||||+++|.++..+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345 6789999999 9999999999999999999865443
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-07 Score=98.95 Aligned_cols=111 Identities=18% Similarity=0.256 Sum_probs=70.5
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
.+.++++.++.| +.|+||+|+|||||++.|++.... .+.++.. .... ..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is~--~~~~-----------~~~---- 89 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHISG--SDFV-----------ELF---- 89 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEEG--GGTT-----------TCC----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCCH--HHHH-----------HHH----
Confidence 455566666666 789999999999999999985310 0111100 0000 000
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHHhc
Q 007982 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP----------TNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~~ 531 (582)
. =+|+++.|..|++|....|.+|++||+ +++.|.+....+.+++..+
T Consensus 90 ---------------------~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l 146 (476)
T 2ce7_A 90 ---------------------V--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146 (476)
T ss_dssp ---------------------T--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred ---------------------h--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence 0 026788999999999999999999999 4467776655555555432
Q ss_pred -------CceEEEEecCHHHH
Q 007982 532 -------DGGLVLVSHDFRLI 545 (582)
Q Consensus 532 -------~~tvi~vsHd~~~~ 545 (582)
+..||.+||+.+.+
T Consensus 147 d~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 147 DGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHSCGGGTEEEEEEESCGGGS
T ss_pred hccCCCCCEEEEEecCChhhh
Confidence 34688899998655
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-08 Score=97.97 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=40.9
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
..|+++|++..|+. +|+|.+ ++++|+|||||||||||++|+++..++.+.
T Consensus 8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~ 57 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTL 57 (227)
T ss_dssp EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT
T ss_pred eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCe
Confidence 36889998776642 466666 899999999999999999999998887553
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-07 Score=93.82 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=75.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc-CceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhc
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH-NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRF 472 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (582)
-.++|+|+||+|||||++.|+|.. +..|..... ....++.+.+.. .. -.+++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~---~~---------------------~~l~Dt~ 222 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGY---FR---------------------YQIIDTP 222 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETT---EE---------------------EEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecC---ce---------------------EEEEeCC
Confidence 478999999999999999999975 211111000 001111111110 00 0011122
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cCHH
Q 007982 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD-EPTNHLDIETIDSLAEALNE-W-DGGLVLVS--HDFR 543 (582)
Q Consensus 473 gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tvi~vs--Hd~~ 543 (582)
|+. . .++..+|+|++|++. +.+...++-|+++| +|+.++|......+...+.. . +..+|+|. ||+.
T Consensus 223 G~~---~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 223 GLL---D-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTS---S-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred Ccc---c-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 322 1 345689999998776 55555777889999 99999999988777776655 3 56788888 8874
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-07 Score=102.94 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=91.0
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-----------eec--hHHHHHH
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-----------ISC--DEERLKL 142 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-----------i~~--~~~~~~~ 142 (582)
++++..|+...+++++++.+..|+.++|+||||||||||+++|+++.++........ +.+ ......+
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 455556788889999999999999999999999999999999998876543110000 000 0000000
Q ss_pred HHHHHH-hccccCCCcchHHHHHHHHHcC-----------Ch---hHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 143 EKEAEI-LGAQEDGGGEQLERVYERLEAL-----------DA---STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-----------~~---~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
...... ....... .....+...+... .. ........+++..+... ......+|+|++|+
T Consensus 118 ~e~~~~~~~~~~~~--r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~~ 191 (604)
T 3k1j_A 118 VEKYREKAKSQESV--KSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHHHHTCC-------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGGG
T ss_pred HHHHHHhhccchhh--hhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCcccccccc
Confidence 000000 0000000 0000000000000 00 00000122222222111 12235799999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
+...+....++.+|+|||... |++.....|.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999988 899999999999874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4e-07 Score=95.11 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCCcEEEEcCcee-----EEEechhhhhhcCCcccHHHHHHhc--
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV-----------PLDGMVRRHNHLR-----IAQFHQHLAEKLDMDMSALQYMIKE-- 456 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~-----------p~~G~i~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~~-- 456 (582)
+++|+|++|||||||++.|+|... |+.|.|...+... +|++.+.+..........++.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 489999999999999999999876 4556666654210 1222211110000000111111100
Q ss_pred ------CCCCh---H---HHHHHHHHhcCCCCcc---ccCCCCCCChhHHHHHHHH----HHH-ccCCCEEEEeCCCCCC
Q 007982 457 ------YPGNE---E---EKMRAAIGRFGLTGKA---QVMPMKNLSDGQRSRVVFA----WLA-YRQPHMLLLDEPTNHL 516 (582)
Q Consensus 457 ------~~~~~---~---~~~~~~l~~~gl~~~~---~~~~~~~LSgGqkqrv~lA----ral-~~~p~lLlLDEPt~~L 516 (582)
..... . ..+.+++..+++.+.. -...+..+|+|+++++.++ +.+ ..+|++ +|||++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 01111 1 2346677777765422 0123466888888888877 555 434454 899999
Q ss_pred CHHHHHHHHHHHHh
Q 007982 517 DIETIDSLAEALNE 530 (582)
Q Consensus 517 D~~~~~~l~~~l~~ 530 (582)
|....+.+.+.|.+
T Consensus 337 ~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 337 KRTNLELLRDKIYQ 350 (364)
T ss_dssp TTBSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999888765
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-06 Score=87.91 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 474 (582)
.+.|.||+|+|||||++.+++.+.+..+ ..+.++.... ..+ ....+..++..++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~------~~~------------~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFI------YRN------------FTAIIGEIARSLNI 100 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTT------CCS------------HHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCcc------CCC------------HHHHHHHHHHHhCc
Confidence 8999999999999999999998766531 1112221110 001 11223344555554
Q ss_pred CCccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh------cCceEEEEecCHHHHHh
Q 007982 475 TGKAQVMPMKNLSDGQRSRVVFAWLA-YRQPHMLLLDEPTNHLDIETIDSLAEALNE------WDGGLVLVSHDFRLINQ 547 (582)
Q Consensus 475 ~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tvi~vsHd~~~~~~ 547 (582)
.. +....+.++.......... ..+|.+|+|||+... |......|...+.. .+..+|++||+.++...
T Consensus 101 ~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 101 PF-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp CC-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred cC-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 21 1123444443332222111 245889999999876 98888888888754 35578999999876655
Q ss_pred hc
Q 007982 548 VA 549 (582)
Q Consensus 548 ~~ 549 (582)
+.
T Consensus 175 l~ 176 (389)
T 1fnn_A 175 LD 176 (389)
T ss_dssp SC
T ss_pred hC
Confidence 44
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-07 Score=85.71 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.8
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 35789999999999999999999999999977655
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-07 Score=87.46 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 206 qRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
+.+.+|++|+.+|+++++| ||+||..++..+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-06 Score=86.04 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=33.4
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC--CCCCCCcEEEE
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVRR 426 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G--l~~p~~G~i~~ 426 (582)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 47888888887 899999999999999999999 66777776653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-06 Score=88.56 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
-|++|+++.|+||||||||||+..++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999997543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-07 Score=87.93 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=37.5
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+|+++.++.....+..++..++|++++|+||||||||||+++|++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577888888888888888889999999999999999999999998665
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.3e-06 Score=84.01 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERL 167 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (582)
|+.+.--+.+|+++.|.|++|+|||||+.-++.........+ ..+...
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-l~fSlE------------------------------- 83 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-AVFSLE------------------------------- 83 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-EEEESS-------------------------------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCC-------------------------------
Confidence 444444578999999999999999999988763221111100 011110
Q ss_pred HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHH-HHhhc-
Q 007982 168 EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE-TLKKF- 245 (582)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~~- 245 (582)
++......++......+.+. .+. -..||.++.+|+..|...+.+++++|.|+|... +........ +.+++
T Consensus 84 --ms~~ql~~Rlls~~~~v~~~-~l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~g 155 (338)
T 4a1f_A 84 --MSAEQLALRALSDLTSINMH-DLE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHK 155 (338)
T ss_dssp --SCHHHHHHHHHHHHHCCCHH-HHH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCT
T ss_pred --CCHHHHHHHHHHHhhCCCHH-HHh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcC
Confidence 11112222232333333332 121 247999999999999999999999999998644 444433333 33445
Q ss_pred CcEEEEEec
Q 007982 246 DRILVVISH 254 (582)
Q Consensus 246 ~~tviivsH 254 (582)
+..+|||-|
T Consensus 156 g~~lIVIDy 164 (338)
T 4a1f_A 156 ELGIAFIDY 164 (338)
T ss_dssp TEEEEEEEE
T ss_pred CCCEEEEec
Confidence 567777754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=83.38 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=37.4
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhh------cCcEEEEEecCHHHHHhhcC
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKK------FDRILVVISHSQDFLNGVCT 264 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tviivsHd~~~~~~~~d 264 (582)
.+|.+|++||+... |......|...+.+ .+.++|++||+.++...+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 45889999999876 99988888888754 35689999999876655443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-06 Score=82.42 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=29.6
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEE
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVR 425 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~ 425 (582)
.+|++++|+||||||||||+++|.+++++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998864 455554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=82.16 Aligned_cols=38 Identities=26% Similarity=0.094 Sum_probs=24.2
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
..+++|+||++.+|.+++|+|++||||||+.+.|+...
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999998543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.6e-06 Score=84.73 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=75.2
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-++.......+ .+.|+.- +++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~--------~Vl~fSl--------Ems~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR--------GVAVFSL--------EMSAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------EEEEEES--------SSCHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC--------eEEEEeC--------CCCHHHHH--------
Confidence 35555456899999999999999999999888764432112 2333321 11111111
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhc-CceEEEEe
Q 007982 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA-LNEW-DGGLVLVS 539 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~-~~tvi~vs 539 (582)
.++......+.+... . -+.||+++.+|+..|...+.+++++|.|+|... +.......+. .++. +..+|||-
T Consensus 91 -~Rlls~~~~v~~~~l--~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 91 -LRALSDLTSINMHDL--E--SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHCCCHHHH--H--HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHhhCCCHHHH--h--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 111222222222211 1 147999999999999999999999999998643 4443333332 2334 44566553
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.06 E-value=5e-06 Score=86.53 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=47.7
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeec-CCCCCCCHHHHHHHHHHHhh-c-CcEEEEEe--cCHH
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLD-EPTNHLDLEACVWLEETLKK-F-DRILVVIS--HSQD 257 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tviivs--Hd~~ 257 (582)
.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +..+|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 467789999998876 55556777889999 99999999887666665554 3 56788888 8863
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-06 Score=81.55 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=27.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
++|.+|++++|+||||||||||+++|++...++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 468899999999999999999999999877443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-06 Score=82.35 Aligned_cols=38 Identities=39% Similarity=0.430 Sum_probs=24.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.9e-05 Score=80.49 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
.|.+|+++.|+||||||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-07 Score=88.85 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=38.6
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
|++..+. .....+..++...+|++++|+||||||||||+++|++.+. ..|.+
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 4 NIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp ------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 4555443 2345567777789999999999999999999999999986 66766
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-06 Score=82.42 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
...|++|+.+|.++++| ||++|..++..+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999988887754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-06 Score=87.80 Aligned_cols=130 Identities=14% Similarity=0.229 Sum_probs=71.0
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG 470 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (582)
..+..+.|.||+|+|||||++.+++.+.+..|. ...+.++.... .. + .......++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~---~~---~------------~~~~~~~i~~ 99 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQ---ID---T------------PYRVLADLLE 99 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHH---HC---S------------HHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCC---CC---C------------HHHHHHHHHH
Confidence 346789999999999999999999877554321 11112222110 00 0 1112233344
Q ss_pred hcCCCCccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEeCCCCCCC---HHHHHHHHHHHHh---cCceEEEEecCHH
Q 007982 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLA-YRQPHMLLLDEPTNHLD---IETIDSLAEALNE---WDGGLVLVSHDFR 543 (582)
Q Consensus 471 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLDEPt~~LD---~~~~~~l~~~l~~---~~~tvi~vsHd~~ 543 (582)
.++... +....+..+.........- ...|.+|++||+....+ ......+.+.+.. .+..+|++||+.+
T Consensus 100 ~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 100 SLDVKV-----PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTSCCC-----CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 444321 1123444442222221111 23388999999988763 4455566666643 2457899999986
Q ss_pred HHHhh
Q 007982 544 LINQV 548 (582)
Q Consensus 544 ~~~~~ 548 (582)
+...+
T Consensus 175 ~~~~~ 179 (386)
T 2qby_A 175 FVDLL 179 (386)
T ss_dssp GGGGC
T ss_pred hHhhh
Confidence 54443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-06 Score=86.80 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=33.0
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHh---CCCCCCCcEEE
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMT---GDLVPLDGMVR 425 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~---Gl~~p~~G~i~ 425 (582)
.+|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999886
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-06 Score=91.47 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCChh---hhhccCCCCChhHHHHHHHH----HHH-hcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 178 RAAEILYGLGFNKT---MQAKKTRDFSGGWRMRIALA----RAL-FINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 178 ~~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~LA----raL-~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
.+.++|+.+++... ....++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...|.+.|.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 34566777665321 11345777898998988877 555 434454 89999999999998888765
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-06 Score=80.94 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=29.2
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
..+...+|++++|+||||||||||+++|+|.+ |.+...+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 34566789999999999999999999999987 6666543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=83.93 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=66.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
++.+++++|||||||||++..|++.+.+..++|.... .... .. ...+....+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~--------~D~~-----r~------------~a~eqL~~~~~~ 150 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA--------ADVY-----RP------------AAYDQLLQLGNQ 150 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE--------ECCS-----CH------------HHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--------cCcc-----ch------------hHHHHHHHHHHh
Confidence 4679999999999999999999999887766664321 1100 00 011223334445
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHHHhc
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT-NH--LDIETIDSLAEALNEW 531 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt-~~--LD~~~~~~l~~~l~~~ 531 (582)
.|++-.... ...+.-.-.+-+++.+...+++++|+|+|. .+ .|+....++...+...
T Consensus 151 ~gv~~~~~~---~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 151 IGVQVYGEP---NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp TTCCEECCT---TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred cCCceeecc---ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 555422110 111222222335566666788999999887 45 7777766666655443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-06 Score=78.27 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+|++++|+||||||||||+++|.+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999998765
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-06 Score=84.97 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=27.7
Q ss_pred ECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh---cCCCCC
Q 007982 82 FHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG---EIEASD 125 (582)
Q Consensus 82 y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~---~~~~~~ 125 (582)
++...++.+.+ ++|++++|+||||||||||+++|+ |+..++
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 33334454443 789999999999999999999999 776544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.5e-06 Score=86.68 Aligned_cols=37 Identities=35% Similarity=0.398 Sum_probs=29.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCce
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL 129 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~ 129 (582)
|++..|++++|+||||||||||+|+|+|+..++.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 3455799999999999999999999999988775543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.7e-05 Score=79.54 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=24.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-|++|+++.|.||+|||||||+..++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999999998874
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=81.38 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=75.6
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHH
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYER 166 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (582)
-|+.+.--+.+|+++.|.|++|+|||||+..++.-...... .++.+..+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~---~vl~~slE---------------------------- 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD---VVNLHSLE---------------------------- 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTC---EEEEEESS----------------------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEECC----------------------------
Confidence 45555545789999999999999999998887621111100 01111000
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHH-HHHHHhhc
Q 007982 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW-LEETLKKF 245 (582)
Q Consensus 167 l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~-l~~~l~~~ 245 (582)
++......++......+.+.. +.... ..||.++++|+..|...+.++++++.|+|. +++..... +..+.++.
T Consensus 106 ---~s~~~l~~R~~~~~~~i~~~~-l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 106 ---MGKKENIKRLIVTAGSINAQK-IKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKN 178 (315)
T ss_dssp ---SCHHHHHHHHHHHHTTCCHHH-HHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTS
T ss_pred ---CCHHHHHHHHHHHHcCCCHHH-HhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhc
Confidence 011111222222222333221 11111 239999999999999999999999999986 44444332 33333445
Q ss_pred CcE--EEEEecC
Q 007982 246 DRI--LVVISHS 255 (582)
Q Consensus 246 ~~t--viivsHd 255 (582)
+.. +|+|-|-
T Consensus 179 ~~~~~lVVID~l 190 (315)
T 3bh0_A 179 PGKRVIVMIDYL 190 (315)
T ss_dssp SSCCEEEEEECG
T ss_pred CCCCeEEEEeCc
Confidence 656 8888664
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.2e-06 Score=78.33 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=24.4
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+..++|++++|+||||||||||+++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4566789999999999999999999998754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.1e-06 Score=78.56 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=27.4
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
.+|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999877
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.84 E-value=3.3e-07 Score=93.30 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEEecCHHHHHhhcCEEE
Q 007982 485 NLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDIET-IDSLAEALNE----WDG--GLVLVSHDFRLINQVAHEIW 553 (582)
Q Consensus 485 ~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tvi~vsHd~~~~~~~~d~i~ 553 (582)
.+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 100 ~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 100 RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 3898886 4566665 78999999 8999866 5555444443 342 45566677666666665543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.9e-06 Score=84.09 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCceeecCCCCCCC---HHHHHHHHHHHhh---cCcEEEEEecCHHHHHhh
Q 007982 218 PTILLLDEPTNHLD---LEACVWLEETLKK---FDRILVVISHSQDFLNGV 262 (582)
Q Consensus 218 P~lLlLDEPt~~LD---~~~~~~l~~~l~~---~~~tviivsHd~~~~~~~ 262 (582)
|.+|++||+....+ ......+.+.+.. .+.++|++||+.++...+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 88999999988663 4455556565632 256899999998755443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.81 E-value=5.3e-05 Score=78.35 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=25.5
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5e-05 Score=77.87 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=25.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+.+|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999888764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4e-06 Score=94.49 Aligned_cols=135 Identities=13% Similarity=0.008 Sum_probs=70.5
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
++.+..+..++|+|+||+|||||++.|++...+ ..|+| ..+.....+..+........... .......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~--------~~~~~~~- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTG--------VAPLLFR- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCE--------EEEEEET-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEec--------ceEEeeC-
Confidence 456788999999999999999999999976654 55665 11110000000000000000000 0000000
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRL 544 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 544 (582)
+..-...+.|. .-. -.......+-..++-+|++| |+.++++.+... ...+...+..+|++.|.++.
T Consensus 73 --------~~~~nliDTpG-~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 73 --------GHRVFLLDAPG-YGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTERA-WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp --------TEEEEEEECCC-SGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHHHHHTTCCEEEEEECGGG
T ss_pred --------CEEEEEEeCCC-ccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHHH-HHHHHHccCCEEEEecCCch
Confidence 00001111221 100 01223333345788899999 999999887744 44455567788899998875
Q ss_pred H
Q 007982 545 I 545 (582)
Q Consensus 545 ~ 545 (582)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.1e-07 Score=89.13 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=41.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+++++++.|++..+++++++.+++| ++|+||||||||||+++|++...
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44566777777777899999999999 99999999999999999997654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.1e-06 Score=79.76 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=33.1
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
..+|.+++|+|+||||||||++.|.+++.+..|.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 4678899999999999999999999999888887754
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.2e-06 Score=79.78 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=31.4
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
....+|++++|+|+||||||||+++|+|+ .|.|...+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 34578999999999999999999999998 57776543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.78 E-value=7.8e-06 Score=77.66 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.8
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.76 E-value=2.4e-06 Score=86.87 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
+++.+|++++|+||||||||||+|+|.|...+..+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 456689999999999999999999999887665443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.3e-05 Score=76.68 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=26.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999987654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.5e-05 Score=80.17 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.2
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
..+|++++++++ .++|||++|||||||++.|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 358899999998 8999999999999999999984
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.8e-06 Score=88.09 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=48.0
Q ss_pred eEEEEEEEEEecCCceeeE--------------eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 366 VLQFVEVTFGYTPDNLIYK--------------NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~--------------~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-+.|+|+++.|+..+..++ |+.+.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999987778888 899999999999999999999999999998865
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.5e-05 Score=76.13 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-+++|+++.|.||+|||||||+..++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 578999999999999999999998864
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.1e-07 Score=103.22 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+++++...|.+..+++++++.+++| +.|+||||+|||||+++|++...
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34455555566667889999999999 99999999999999999987543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4.3e-06 Score=85.71 Aligned_cols=44 Identities=32% Similarity=0.286 Sum_probs=39.4
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
+.+++|.+.+|++++|+|+||+||||++..|++.+.+..|+|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35788888999999999999999999999999999988888865
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=83.75 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred EeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 75 v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++...+.++
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 456777787654 678887 8999999999999999999999987765543
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-06 Score=87.01 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=74.7
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHH--
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV-- 163 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 163 (582)
.+|+++++.+++|++++|+||||||||||+++|++... +.... +......... ....+. +... ...+++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~---g~~~~-~~~~~~~~~~--~lg~~~-q~~~--~l~dd~~~ 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALN-VNLPLDRLNF--ELGVAI-DQFL--VVFEDVKG 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEEC-CSSCTTTHHH--HHGGGT-TCSC--EEETTCCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC---CcEEE-EeccchhHHH--HHHHhc-chhH--HHHHHHHH
Confidence 58999999999999999999999999999999987432 11100 1111111110 111111 1000 000000
Q ss_pred HHH-HHcCCh-hH--HHHHHHHHHHh---------------CCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee-e
Q 007982 164 YER-LEALDA-ST--AEKRAAEILYG---------------LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL-L 223 (582)
Q Consensus 164 ~~~-l~~~~~-~~--~~~~~~~~l~~---------------lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl-L 223 (582)
... ...+.. .. ....+...+.+ .-+.....+.....+++|+++|++.+.+++..|++++ |
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyL 307 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCL 307 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence 000 000000 00 01122333331 1122223456778899999999999888899999988 9
Q ss_pred cCCCC
Q 007982 224 DEPTN 228 (582)
Q Consensus 224 DEPt~ 228 (582)
|+|+.
T Consensus 308 d~~~~ 312 (377)
T 1svm_A 308 ERSEF 312 (377)
T ss_dssp HTCTH
T ss_pred eCCHH
Confidence 99997
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.68 E-value=4.8e-05 Score=80.70 Aligned_cols=163 Identities=13% Similarity=-0.017 Sum_probs=85.1
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--eEEEechh--hhhhcCCcccHHHHHHhcCCC
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--RIAQFHQH--LAEKLDMDMSALQYMIKEYPG 459 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--~~~~~~q~--~~~~~~~~~~~~~~~~~~~~~ 459 (582)
++++|. ++.+++++|+|||||||++..|++.+.+..|.|.....- +.+...|. .....+++. + ...+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v-----~-~~~~~ 162 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-----L-EVMDG 162 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-----E-ECCTT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE-----E-ecCCC
Confidence 567777 889999999999999999999999999988888653210 00000010 000000000 0 00011
Q ss_pred ChH-HHHHHHHHhc---CCCCccccCCCCCCC---hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH-hc
Q 007982 460 NEE-EKMRAAIGRF---GLTGKAQVMPMKNLS---DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN-EW 531 (582)
Q Consensus 460 ~~~-~~~~~~l~~~---gl~~~~~~~~~~~LS---gGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~-~~ 531 (582)
.+. +-+.++++.+ +.+-..-+.|. .++ .-..+...+++++.-++-+|++| ++.+.|... .+ +.++ ..
T Consensus 163 ~~p~~i~~~~l~~~~~~~~DvVIIDTaG-~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~--~a-~~f~~~l 237 (425)
T 2ffh_A 163 ESPESIRRRVEEKARLEARDLILVDTAG-RLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALS--VA-RAFDEKV 237 (425)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHH--HH-HHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCC-cccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHH--HH-HHHHhcC
Confidence 111 2223344332 22222334442 343 23456667777776666678888 456655432 22 2333 34
Q ss_pred CceEEEEecC-H--------HHHHhhcCEEEEEeCCe
Q 007982 532 DGGLVLVSHD-F--------RLINQVAHEIWVCENQA 559 (582)
Q Consensus 532 ~~tvi~vsHd-~--------~~~~~~~d~i~~l~~G~ 559 (582)
+.+-|++|+- . .......-.|.++..|.
T Consensus 238 ~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge 274 (425)
T 2ffh_A 238 GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE 274 (425)
T ss_dssp CCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSS
T ss_pred CceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCC
Confidence 5565666662 2 12233345677776664
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=70.37 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE--cCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR--HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRF 472 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~--~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (582)
.++|+|++|+|||||++.|+|...+.++.... ........+.-. ...+ . +++.-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i----~-------------------liDTp 86 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETEL----V-------------------VVDTP 86 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET-TEEE----E-------------------EEECC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC-CceE----E-------------------EEECC
Confidence 57999999999999999999987766664311 111111111000 0000 0 00111
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHHH---ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec
Q 007982 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLA---YRQPHMLLLDEPTNHLDIETIDSLAEALNEWD-----GGLVLVSH 540 (582)
Q Consensus 473 gl~~~~~~~~~~~LSgGqkqrv~lAral---~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsH 540 (582)
|+.. ...|+.+.++ .+.+.+ ...|+++|+..+.+.++......+..++..++ ..+|+++|
T Consensus 87 G~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 87 GIFD-------TEVPNAETSK-EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp SCC------------CHHHHH-HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CccC-------CCCCHHHHHH-HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 1110 1233333332 222322 35789999999998998877766666654432 37888898
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.8e-06 Score=85.23 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred eeeEeeeEEEecCC------EEEEEcCCCCcHHHHHHHHhCCCC--CCCcEEEEcCceeEEEechhhhhhcCCcccHHHH
Q 007982 381 LIYKNLDFGVDLDS------RVALVGPNGAGKSTLLKLMTGDLV--PLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQY 452 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge------~~aivG~NGsGKSTLl~ll~Gl~~--p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 452 (582)
..+++++..+..+. ++||+||||||||||+++|.+++. |..|.|.. +.++.. .......+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~--------i~~D~f---~~~~~~l~~ 142 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV--------ITTDGF---LYSNAKLEK 142 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE--------EEGGGG---BCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE--------Eeeccc---ccchhhhhh
Confidence 34555555555554 899999999999999999999987 45665432 221110 000000000
Q ss_pred --HH--hcCCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 007982 453 --MI--KEYPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518 (582)
Q Consensus 453 --~~--~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 518 (582)
+. ..++. .+.....+.+..+.-.......| .+|.+..+|+..+...+..|+++|++.|..-.|.
T Consensus 143 ~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 143 QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 00 01111 12334444444432111011223 2444444444333445678999999999988776
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.4e-05 Score=70.88 Aligned_cols=29 Identities=45% Similarity=0.607 Sum_probs=24.1
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+.++++.+| +.+|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345556555 99999999999999999996
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.5e-05 Score=73.33 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=25.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=71.71 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHhcCCCceeecCCCCCCCH----------HHHHHHHHHHhhc-------CcEEEEEecCHH
Q 007982 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL----------EACVWLEETLKKF-------DRILVVISHSQD 257 (582)
Q Consensus 201 SGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~----------~~~~~l~~~l~~~-------~~tviivsHd~~ 257 (582)
+++++.|..+..+...+|.+|++||+.+-++. .....++..+... +..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 45777888888888899999999999887653 2233455555443 235777888754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.1e-06 Score=90.01 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=40.6
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCc------EEEEECCCCCcHHHHHHHHhcCCC
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGR------RYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge------~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+.|++.|++...+.+++..+..+. ++||+||||||||||+++|.++..
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666777888888888887776 999999999999999999998765
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.63 E-value=5e-05 Score=77.55 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=28.6
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
-|+.+.-.+.+|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4555555689999999999999999999887764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=79.22 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHH
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA 179 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (582)
.++|||++|+|||||++.|.+-.........
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~------------------------------------------------- 55 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTP------------------------------------------------- 55 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC-------------------------------------------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCC-------------------------------------------------
Q ss_pred HHHHHhCCCChhhhhccCCCCC--------hh--------HHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHh
Q 007982 180 AEILYGLGFNKTMQAKKTRDFS--------GG--------WRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK 243 (582)
Q Consensus 180 ~~~l~~lgl~~~~~~~~~~~LS--------GG--------qrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~ 243 (582)
|.+.+.....+..-. +| +.+...++...+.+++++|+......-......++.+.++
T Consensus 56 -------g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~ 128 (456)
T 4dcu_A 56 -------GVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY 128 (456)
T ss_dssp ------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHT
T ss_pred -------CcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHH
Q ss_pred hcCcEEEEEecCHHHHHhhc--CeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q 007982 244 KFDRILVVISHSQDFLNGVC--TNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 321 (582)
Q Consensus 244 ~~~~tviivsHd~~~~~~~~--d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (582)
+.+..+|++-+..|...... ...+-+.-|.....+.....-.
T Consensus 129 ~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv------------------------------------ 172 (456)
T 4dcu_A 129 RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL------------------------------------ 172 (456)
T ss_dssp TCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTH------------------------------------
T ss_pred HcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccch------------------------------------
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcC
Q 007982 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGP 401 (582)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~ 401 (582)
....+.+.. .++........ ...-.++|+|.
T Consensus 173 ---------~~L~~~i~~---------------~l~~~~~~~~~-------------------------~~~~ki~ivG~ 203 (456)
T 4dcu_A 173 ---------GDLLDAVAE---------------HFKNIPETKYN-------------------------EEVIQFCLIGR 203 (456)
T ss_dssp ---------HHHHHHHHT---------------TGGGSCSSCCC-------------------------TTCEEEEEECS
T ss_pred ---------HHHHHHHHh---------------hcccccccccc-------------------------cccceeEEecC
Q ss_pred CCCcHHHHHHHHhC
Q 007982 402 NGAGKSTLLKLMTG 415 (582)
Q Consensus 402 NGsGKSTLl~ll~G 415 (582)
.|+|||||++.+.|
T Consensus 204 ~~vGKSslin~l~~ 217 (456)
T 4dcu_A 204 PNVGKSSLVNAMLG 217 (456)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=7.4e-06 Score=80.72 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=43.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
.+++++.+.|. ...+++++++.+..| ++|+||||||||||+++|++.+. .|.|...
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 34555555564 245788999999998 99999999999999999999875 5666554
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=76.00 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHH
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAE 176 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 176 (582)
++.+++++|+|||||||++..|+......+..+ ..+..+..+... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV-llv~~D~~r~~a---------------------------------~ 141 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV-GLVAADVYRPAA---------------------------------Y 141 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE-EEEEECCSCHHH---------------------------------H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEecCccchhH---------------------------------H
Confidence 578999999999999999999986554432221 112222110000 0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC-CC--CCHHHHHHHHHHHhhc
Q 007982 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT-NH--LDLEACVWLEETLKKF 245 (582)
Q Consensus 177 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt-~~--LD~~~~~~l~~~l~~~ 245 (582)
.....+.+..|++-.. .....+--.--+-+++.+...+++++|+|+|. .+ .|+....++..+++..
T Consensus 142 eqL~~~~~~~gv~~~~---~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 142 DQLLQLGNQIGVQVYG---EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp HHHHHHHHTTTCCEEC---CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceee---ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 0111122233332110 00011111112335666666799999999997 56 8888777777765544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2e-05 Score=76.65 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=26.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.++|++++|+|+||||||||+++|++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999999999987
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.1e-05 Score=88.46 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=33.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEE
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-MVR 425 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~i~ 425 (582)
.+.+|++++|+|+||||||||+++|+|.+.|++| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 4789999999999999999999999999999887 664
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.59 E-value=1e-05 Score=80.96 Aligned_cols=128 Identities=13% Similarity=0.224 Sum_probs=74.8
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------eEEEec
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------RIAQFH 436 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------~~~~~~ 436 (582)
+++++.+.|. ...++++++|.+.+| ++|+||||||||||+++|++.+. .|.|...+.. .+.+++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 4556666664 346789999999998 99999999999999999999875 5666654210 011122
Q ss_pred hhhhhhcCCcccHHHHH---HhcCCC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYM---IKEYPG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|.... ..+..++++.+ ...... .......+.+.. .+..|||||+||+.+++++..+|++ ||
T Consensus 126 ~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 22110 11111211111 100000 000111112111 1246899999999999999999987 67
Q ss_pred CCC
Q 007982 511 EPT 513 (582)
Q Consensus 511 EPt 513 (582)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 664
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=2e-05 Score=72.84 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=27.7
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
.+|++++|+|+|||||||+++.|++.+ |.+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 358899999999999999999999875 555544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=72.01 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=64.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
++..+.|.||+|+|||||++.|++.+.. . ..++.. ..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~~--~~------------------------------ 89 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNISA--AS------------------------------ 89 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEES--TT------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEeeH--HH------------------------------
Confidence 3567899999999999999999985421 0 000000 00
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHhcC-------ce
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE----------TIDSLAEALNEWD-------GG 534 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~----------~~~~l~~~l~~~~-------~t 534 (582)
+. . .. .-++++..+..+..+...+|.+|++||+.+-++.. ....+...+.... ..
T Consensus 90 --l~---~-~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 90 --LT---S-KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp --TS---S-SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred --Hh---h-cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 00 0 00 12467888888898888999999999998776532 2234445555432 24
Q ss_pred EEEEecCHH
Q 007982 535 LVLVSHDFR 543 (582)
Q Consensus 535 vi~vsHd~~ 543 (582)
||.+|++.+
T Consensus 162 vi~~tn~~~ 170 (297)
T 3b9p_A 162 VLAATNRPQ 170 (297)
T ss_dssp EEEEESCGG
T ss_pred EEeecCChh
Confidence 677888653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.6e-05 Score=69.70 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.4
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455556554 89999999999999999986
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.1e-05 Score=71.18 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.|.+++|+|+||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999997653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.8e-05 Score=70.88 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+|++++|+|+||||||||+++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998653
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.52 E-value=1.2e-05 Score=83.30 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=45.3
Q ss_pred ceEEeeeEEEECC-eeeeE--------------eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 72 DIRIESLSVTFHG-HDLIV--------------DSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 72 ~i~v~nls~~y~~-~~il~--------------~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.++|+++.|+. +..|+ |+++.+.+|++++|+||+|+|||||++.|+..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 5788999999975 56888 89999999999999999999999999999764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.52 E-value=3.5e-05 Score=73.17 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=25.6
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 33445899999999999999999999986554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4.6e-05 Score=81.55 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHhc---CceEEEEecC
Q 007982 502 RQPHMLLLDEPTNHLDI-ETIDSLAEALNEW---DGGLVLVSHD 541 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l~~~---~~tvi~vsHd 541 (582)
.+|++|++||+..-.+. .+...+...++.+ +..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999887764 5667777777543 5678899997
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00022 Score=76.20 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=31.3
Q ss_pred cCCCceeecCCCCCCCH-HHHHHHHHHHhh---cCcEEEEEecCH
Q 007982 216 INPTILLLDEPTNHLDL-EACVWLEETLKK---FDRILVVISHSQ 256 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~-~~~~~l~~~l~~---~~~tviivsHd~ 256 (582)
.+|++||+||+..-.+. .....+...+.. .+..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 566677777654 367889999973
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.43 E-value=3.5e-05 Score=73.17 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
.++|.+++|+|+||||||||+++|++...+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999866543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=1.7e-05 Score=76.36 Aligned_cols=34 Identities=38% Similarity=0.576 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC---CCCCcEEEE
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL---VPLDGMVRR 426 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~---~p~~G~i~~ 426 (582)
+.+++|+||+||||||++++|++.+ .++.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998766 556666543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=5.6e-05 Score=71.85 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=27.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+.+|.+++|+|++|||||||+++|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 477899999999999999999999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=5.7e-05 Score=85.01 Aligned_cols=48 Identities=4% Similarity=-0.047 Sum_probs=36.2
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFL 259 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~ 259 (582)
...+-..++-++++| |++++++.+..++. .+...+..+|++.|.+|..
T Consensus 92 ~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~-~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGALEAADAALVAVS-AEAGVQVGTERAWT-VAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHCSEEEEEEE-TTTCSCHHHHHHHH-HHHHTTCCEEEEEECGGGC
T ss_pred HHHHhhcCcEEEEEc-CCcccchhHHHHHH-HHHHccCCEEEEecCCchh
Confidence 333446788899999 99999998886554 4555678888999998753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.37 E-value=3.4e-06 Score=87.35 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=45.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
.++.+++++.|+.+.+++++++.+.+|.+++|+|+||+|||||++.|++...+.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 355667777777778899999999999999999999999999999998765443
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=68.51 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=75.0
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.+.+|+++.|.|++|+|||||+..++.......+. +.|+.-... + + .. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~--------vlyid~E~s--~--~---------------~~----~ 107 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--------CAFIDAEHA--L--D---------------PI----Y 107 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--------EEEEESSCC--C--C---------------HH----H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe--------EEEEeCCCC--c--c---------------HH----H
Confidence 37899999999999999999998877543222222 223221100 0 0 00 0
Q ss_pred HHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH-H-----------HH-HH-------H
Q 007982 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDI-E-----------TI-DS-------L 524 (582)
Q Consensus 469 l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~-~-----------~~-~~-------l 524 (582)
+..+|+... ....+ -+. + +-+.+++.++ .+|+++|+|+++.-... + .. +. |
T Consensus 108 a~~~g~~~~~l~i~~~---~~~-e-~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L 182 (356)
T 1u94_A 108 ARKLGVDIDNLLCSQP---DTG-E-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 182 (356)
T ss_dssp HHHTTCCGGGCEEECC---SSH-H-HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHH
T ss_pred HHHcCCChhheeeeCC---CCH-H-HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHH
Confidence 223333211 11111 122 2 3345555554 68999999999987631 1 01 11 2
Q ss_pred HHHHHhcCceEEEEecCHH----------------HHHhhcCEEEEEeCCeE
Q 007982 525 AEALNEWDGGLVLVSHDFR----------------LINQVAHEIWVCENQAV 560 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~----------------~~~~~~d~i~~l~~G~i 560 (582)
...+++++.+||+++|-.. .+..+||-++.+...++
T Consensus 183 ~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~ 234 (356)
T 1u94_A 183 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 234 (356)
T ss_dssp HHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeee
Confidence 2233556889999988532 35567888777765443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=9.9e-05 Score=70.36 Aligned_cols=29 Identities=45% Similarity=0.607 Sum_probs=24.3
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666664 99999999999999999985
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.35 E-value=3.3e-05 Score=79.12 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=34.3
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
+.+++|++.+|++++|+|+||+||||++..|++...+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999999999999999987665433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00073 Score=72.25 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=86.1
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhh-hhhc---------CCcccHHH
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHL-AEKL---------DMDMSALQ 451 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~-~~~~---------~~~~~~~~ 451 (582)
-|+.+.-.+.+|+.+.|.|++|+|||||+..++.......|. .+.|+.-.. ...+ ..+...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-------~vl~~slE~~~~~l~~R~~~~~~~i~~~~l- 260 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-------GVGIYSLEMPAAQLTLRMMCSEARIDMNRV- 260 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CEEEEESSSCHHHHHHHHHHHHTTCCTTTC-
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-------eEEEEECCCCHHHHHHHHHHHHcCCCHHHH-
Confidence 455555568999999999999999999998887654322221 122221110 0000 0000000
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH------HH---
Q 007982 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDI------ET--- 520 (582)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~------~~--- 520 (582)
........+..++..+++.+.-.......+ ..+|..+.. ..++.+. .+|+++|+|..+.-... .+
T Consensus 261 -~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~-~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~ 336 (444)
T 2q6t_A 261 -RLGQLTDRDFSRLVDVASRLSEAPIYIDDT-PDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQ 336 (444)
T ss_dssp -CGGGCCHHHHHHHHHHHHHHHTSCEEEECC-TTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHH
T ss_pred -hCCCCCHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHH
Confidence 000011111223333343332222222222 367777653 3445454 58999999999865543 11
Q ss_pred -HHHHHHHH----HhcCceEEEEecCHH-------------------HHHhhcCEEEEEe
Q 007982 521 -IDSLAEAL----NEWDGGLVLVSHDFR-------------------LINQVAHEIWVCE 556 (582)
Q Consensus 521 -~~~l~~~l----~~~~~tvi~vsHd~~-------------------~~~~~~d~i~~l~ 556 (582)
...+...| ++++.+||+++|=-. -+.+.||.|+++.
T Consensus 337 ~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 337 EIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 12233333 456789999998211 3567899999985
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.34 E-value=1.5e-05 Score=82.42 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=40.9
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
..+++++++.+..|.+++|+|+||+|||||++.|+|.+.+..|.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 35678888888999999999999999999999999998887776643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.32 E-value=7.2e-05 Score=72.75 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=31.3
Q ss_pred eEeeeEEEe---cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 383 YKNLDFGVD---LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 383 l~~vsl~i~---~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 555543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=8e-05 Score=70.77 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++++|.+++|+|++|||||||+++|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999999865
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00043 Score=67.25 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=30.4
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc-----CcEEEEEec
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF-----DRILVVISH 254 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tviivsH 254 (582)
.+|+++|+..+.+.++.....++..++..+ ..++|+++|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 478999999999999888777777766533 247888888
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.22 E-value=5.7e-05 Score=82.89 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=29.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM 126 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~ 126 (582)
.+.+|++++|+|+||||||||+++|++...++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 467999999999999999999999998876654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0004 Score=70.25 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+.++..+.|.||+|+|||||+++|+...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678899999999999999999998654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00025 Score=67.53 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=23.9
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455555554 89999999999999999874
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=7.5e-05 Score=69.24 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=26.8
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
.+|.+++|+|++||||||++++|++.+.| .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36889999999999999999999998765 45
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=9.2e-05 Score=76.72 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=29.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~ 425 (582)
.+.+++|+|++|||||||++.|+|.+.|..|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 4568999999999999999999998877777664
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00018 Score=69.88 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.5
Q ss_pred eEeeeEEEe---CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 88 IVDSELELN---YGRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 88 l~~vsl~i~---~Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
|.++||.+. .|.+++|.|++||||||+++.|+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 556666665 8999999999999999999999876544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00024 Score=68.28 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+.+++|+||+||||||++++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=9.8e-05 Score=69.63 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=30.9
Q ss_pred EEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 373 TFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 373 ~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+++|++-..++++++|..+.. .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 345665456788888887776 589999999999999999987
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00025 Score=66.21 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.1
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999754
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0003 Score=65.10 Aligned_cols=27 Identities=37% Similarity=0.418 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+|++++|+|++||||||++++|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999998754
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0051 Score=63.69 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=23.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|+++.|.|++|+|||||...++
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999988775
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.01 E-value=6.7e-05 Score=82.47 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=43.6
Q ss_pred EEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 369 FVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 369 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
++++...|. ...++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|..
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 445555553 234667778877 79999999999999999999999999877666644
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0004 Score=65.49 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999986643
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=67.88 Aligned_cols=130 Identities=13% Similarity=0.049 Sum_probs=74.0
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
.-|+.+.--+.+|+++.|.|++|+|||||+..++.-.....+.-...+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE----------------------------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE----------------------------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-----------------------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-----------------------------
Confidence 345555545889999999999999999998887632211001000011110
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHH-HHHHHHhh
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV-WLEETLKK 244 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~-~l~~~l~~ 244 (582)
++......+.... ..+++.... .-..||..+.+|+.-|...+.+.++.+.|+|. +++.... .+..+.++
T Consensus 239 ----~~~~~l~~R~~~~--~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~ 308 (444)
T 2q6t_A 239 ----MPAAQLTLRMMCS--EARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQ 308 (444)
T ss_dssp ----SCHHHHHHHHHHH--HTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH--HcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHH
Confidence 0111111121111 223321111 12469999999999888888888899999874 4444333 33344445
Q ss_pred cCcEEEEEec
Q 007982 245 FDRILVVISH 254 (582)
Q Consensus 245 ~~~tviivsH 254 (582)
.+..+|+|-+
T Consensus 309 ~~~~lIvID~ 318 (444)
T 2q6t_A 309 NQVGLIIIDY 318 (444)
T ss_dssp SCCCEEEEEC
T ss_pred cCCCEEEEcC
Confidence 5667777754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=66.80 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00033 Score=66.17 Aligned_cols=21 Identities=52% Similarity=0.797 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.93 E-value=2.1e-05 Score=86.47 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=42.1
Q ss_pred EEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
-++++.+.|....++.++++++ +|+.++|+||||||||||+++|++...+.
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3456666776667788888888 89999999999999999999999876543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=6.1e-05 Score=78.47 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=36.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.+.|++..|+.+.++++++|.| +|+|+||+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 588899999998888999999877 99999999999999998654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00039 Score=65.88 Aligned_cols=29 Identities=21% Similarity=0.175 Sum_probs=24.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
...+|.+++|+||+|||||||.+.|....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999997544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00015 Score=69.25 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.7
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
+.+.+|.+++|+|++||||||+.+.|.+.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 34667899999999999999999999998876666
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0004 Score=64.70 Aligned_cols=32 Identities=13% Similarity=0.342 Sum_probs=26.3
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
++|+....|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788888999999999999999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0018 Score=65.88 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+..+.|.||+|+|||||++.|+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999999999998543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00034 Score=70.51 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHhcCC-CceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 210 LARALFINP-TILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 210 LAraL~~~P-~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
+..++...| .+|++||. ..|++.....|.+.|.+.
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 344444444 69999998 678999999999998753
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0013 Score=63.86 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHH-HHHHHHHhcC-c-eEEE-EecCHHHHHhhcC
Q 007982 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTN-HLDIETID-SLAEALNEWD-G-GLVL-VSHDFRLINQVAH 550 (582)
Q Consensus 486 LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~~~~-~l~~~l~~~~-~-tvi~-vsHd~~~~~~~~d 550 (582)
.+.|...+... ..+.+.++||+||.-. ++|..... .+.+.+.... . .+++ .|.+.+.+.++.+
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 35566665543 3578999999999976 58877664 4444444442 2 3333 4566555555543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00029 Score=65.65 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.9
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
..+|.++.|+|++||||||+++.|+..+.+..+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 44688999999999999999999999887665554
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0012 Score=66.36 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
..+.|+||+|+||||+++.|++.+.+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4688999999999999999999887655543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00011 Score=76.56 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=35.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~ 423 (582)
..+.+.+++..|. .+.++++++|+| +|+|++|+|||||++.|.|...+..+.
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3577888888775 356788888876 999999999999999999876554443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00058 Score=62.65 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+|..++|+|++|+|||||++.|+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 577899999999999999999998653
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.001 Score=67.63 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
+..+.|.||+|+|||||++.|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457889999999999999999987644
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00055 Score=64.84 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=26.0
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
..+|.+++|+||+|||||||.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56789999999999999999999988763
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00064 Score=64.88 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRL 544 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~ 544 (582)
.+|.+|++||.-. +|......+...+... +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 8888888898888775 3468888887653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00054 Score=62.86 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00015 Score=73.28 Aligned_cols=42 Identities=19% Similarity=-0.003 Sum_probs=36.2
Q ss_pred Ee-eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 384 KN-LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 384 ~~-vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
.+ ++|+++ |.+++++|+||+||||++..|++.+.+..++|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 677766 8999999999999999999999999887777764
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=66.14 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.5
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988774
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00076 Score=62.89 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=20.7
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678889888776 789999999999999999987
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.73 E-value=6.9e-05 Score=77.15 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=39.3
Q ss_pred eeEEEECCeeeeEeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhcCCC
Q 007982 77 SLSVTFHGHDLIVDSELELNYGRR--YGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 77 nls~~y~~~~il~~vsl~i~~Ge~--~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+++..|+...+++.++..+..|++ +.|.||+|+||||+++++++...
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344456667788889999999998 99999999999999999986543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0021 Score=61.22 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=32.9
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDF 258 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~ 258 (582)
.+|.+|++||.-. ||......|...+.+. +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4678999999765 8888888898888764 3578888887653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00075 Score=70.71 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=30.3
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCC-----------CCCCCcEEEE
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGD-----------LVPLDGMVRR 426 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl-----------~~p~~G~i~~ 426 (582)
+..|..++|+|+||+|||||++.|+|. ..|..|.|..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 567889999999999999999999998 5667777654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00084 Score=62.15 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
.++|+|++|+|||||++.++|...+..+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~ 31 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLG 31 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCC
Confidence 5899999999999999999997544433
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=60.28 Aligned_cols=24 Identities=42% Similarity=0.725 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999754
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0023 Score=66.07 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=65.0
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG 470 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (582)
..+..+.|.||.|+|||||++.++..+....+.. .....+.++... . ..+ ...-+..++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~--~----~~~------------~~~~~~~l~~ 101 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSL--GVLVKPIYVNAR--H----RET------------PYRVASAIAE 101 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH--TCCEEEEEEETT--T----SCS------------HHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc--CCCeEEEEEECC--c----CCC------------HHHHHHHHHH
Confidence 3456789999999999999999987653221000 000011111110 0 001 1122344455
Q ss_pred hcCCCCccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHH-HHHHHHHHHHhc-------CceEEEEec
Q 007982 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLA--YRQPHMLLLDEPTNHLDIE-TIDSLAEALNEW-------DGGLVLVSH 540 (582)
Q Consensus 471 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD~~-~~~~l~~~l~~~-------~~tvi~vsH 540 (582)
.++.. .+....|.++.... +..++ ...|.+|++||.-.-.+.. ....+..+++.. +..+|++|+
T Consensus 102 ~l~~~-----~~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 102 AVGVR-----VPFTGLSVGEVYER-LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHSCC-----CCSSCCCHHHHHHH-HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HhCCC-----CCCCCCCHHHHHHH-HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 55542 12234455552222 22233 2347799999986543221 445565555532 346889998
Q ss_pred CHH
Q 007982 541 DFR 543 (582)
Q Consensus 541 d~~ 543 (582)
+.+
T Consensus 176 ~~~ 178 (387)
T 2v1u_A 176 SLG 178 (387)
T ss_dssp CST
T ss_pred CCc
Confidence 873
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00038 Score=75.37 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=41.5
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
+++++...|. ...+++++++.++.| +.|+||||+|||||+++|++... .+.+...
T Consensus 42 ~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 42 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 3444444443 245788899999988 89999999999999999999874 4555543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00086 Score=62.12 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999974
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0014 Score=69.93 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC------------CCCcEEEEcC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV------------PLDGMVRRHN 428 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~------------p~~G~i~~~~ 428 (582)
.++|+|+||+|||||++.|+|... |.+|.+...+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 689999999999999999999864 5566666554
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00019 Score=67.61 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=30.1
Q ss_pred EEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 79 SVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 79 s~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|++. .+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4556553 6888999888777 589999999999999999974
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0033 Score=62.37 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.3
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..+..+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445678999999999999999998765
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=61.54 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=25.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
..+|.+++|+|++||||||+.+.|+....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999986543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=68.84 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
.+.+++|+|++|||||||++.|.+...+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 57799999999999999999998755433
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=60.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00096 Score=62.19 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=20.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4678899988776 789999999999999999975
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.001 Score=62.70 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00028 Score=72.75 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.2
Q ss_pred eeeEeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhcC
Q 007982 86 DLIVDSELELNYGRR--YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~--~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+++.+++.+++|++ ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 356777888889998 999999999999999999753
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00093 Score=63.01 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.018 Score=59.75 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.+|+++.|.||.|+|||||+..++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0023 Score=63.55 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
..+.-+.|.||.|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999997543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00081 Score=68.05 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHHh--cCCCceeecCCCCCCCHHH-HHHHHHHHhh----cCc--EEEEEecCHHHHHhhcCeEE
Q 007982 200 FSGGWRMRIALARALF--INPTILLLDEPTNHLDLEA-CVWLEETLKK----FDR--ILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 200 LSGGqrqRv~LAraL~--~~P~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tviivsHd~~~~~~~~d~i~ 267 (582)
+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 5566666 78999998 8999765 4545444443 343 56667777666666666554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=63.57 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999985
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0011 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999984
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.015 Score=61.78 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999877654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00029 Score=72.63 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=32.1
Q ss_pred eeEeeeEEEecCCE--EEEEcCCCCcHHHHHHHHhCCC
Q 007982 382 IYKNLDFGVDLDSR--VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~--~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56778888889998 9999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0012 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=25.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+.+|.+++|+|++||||||+.+.|+....
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999999987654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0014 Score=63.54 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.1
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999998743
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00023 Score=72.00 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=38.1
Q ss_pred EEeeeEEEECCeeeeEe-eeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 74 RIESLSVTFHGHDLIVD-SELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~-vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
-.+++++.|++.. .+ ++|+.+ |.+++++|+||+||||++..|++.....
T Consensus 76 ~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 76 VYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp HHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3456666776543 56 788766 9999999999999999999998766543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00082 Score=62.38 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVPL 420 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p~ 420 (582)
-.+++|+|++|||||||++.|.+.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999876543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0055 Score=59.08 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=38.9
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecC----------HHHHHhhcCeEEEEe
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHS----------QDFLNGVCTNIIHMQ 270 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd----------~~~~~~~~d~i~~l~ 270 (582)
+|+++++||--. |+.+..+.+ ..|.+.+.+||++-|+ ...+..+||+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 877655544 4455568899999994 345556999999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=59.74 Aligned_cols=22 Identities=41% Similarity=0.785 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.025 Score=58.68 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
-+++|+++.|.||.|+|||||...++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 36899999999999999999987765
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00022 Score=73.35 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=36.6
Q ss_pred ceeeEeeeEEEecCCE--EEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 380 NLIYKNLDFGVDLDSR--VALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~--~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
..+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 4577888888999988 999999999999999999998765443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=58.83 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=59.36 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=58.86 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=59.45 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0021 Score=58.34 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0015 Score=64.08 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=22.3
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++++.++.| +.|+||+|+|||||+++|++..
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 334444444 8999999999999999998643
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0028 Score=65.41 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999974
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0014 Score=64.20 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+.|+||+|+|||||++.|++.+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=58.71 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+++|+|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 579999999999999999997643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0016 Score=63.39 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.057 Score=58.33 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=25.8
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
|+.+---+.+|+++.|.|++|+|||||+--++
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHH
Confidence 34333247899999999999999999987775
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=57.46 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007982 100 RYGLLGLNGCGKSTLLTAI 118 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l 118 (582)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=58.38 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
|.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0028 Score=61.55 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0042 Score=59.95 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC----------HHHHHhhcCEEEEEe
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD----------FRLINQVAHEIWVCE 556 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd----------~~~~~~~~d~i~~l~ 556 (582)
+|+++++||-- .|+.+..+.+.. +.+.+..||++-|+ ...+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 59999999996 488776555544 44458899999993 334446899998753
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=58.33 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=56.97 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 007982 395 RVALVGPNGAGKSTLLKLM 413 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll 413 (582)
+++|+||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=57.70 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
|-++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997644
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=58.55 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999985
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=58.78 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999974
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=57.79 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0036 Score=61.50 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+||||||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999974
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0026 Score=62.45 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=24.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
...+.++.|+|++||||||+.+.|+...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999998644
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.014 Score=62.27 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHH-HHHHhhcCcE--EEEEec
Q 007982 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL-EETLKKFDRI--LVVISH 254 (582)
Q Consensus 200 LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~~~~t--viivsH 254 (582)
|+..+.+|+.-|...+.+.++.|.|+|. +++...... ..+.++.+.. +|+|-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8888899999888888888999999874 666554433 3344455656 777754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0042 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999999974
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0039 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998854
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0034 Score=61.69 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998654
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.082 Score=57.12 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.+|+.+.|.|++|+|||||+--++-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 588999999999999999999776654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0041 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999973
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0039 Score=58.37 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=0.0
Q ss_pred EEEECCCCCcHHHHHHHH
Q 007982 101 YGLLGLNGCGKSTLLTAI 118 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l 118 (582)
+.|+||||||||||++.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.053 Score=57.50 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
++.+++++|++|+||||++..|+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999985443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0045 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 582 | ||||
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-18 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-20 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-16 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-23 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-23 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-22 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-22 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-18 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-20 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-11 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-09 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 7e-05 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (251), Expect = 4e-25
Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 16/196 (8%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------L 420
L+ +++ GY D + + + ++ + V GPNG GK+TLLK ++ L P
Sbjct: 3 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 421 DGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA--AIGRFGLTGKA 478
+G+ +I + + + + + G + K A+ +
Sbjct: 61 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK 120
Query: 479 QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGG-- 534
+ + LS G RV A + +LD+P +D ++ + +++ E + G
Sbjct: 121 K--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 535 LVLVSHDFRLINQVAH 550
++ + + +
Sbjct: 179 IISSREELSYCDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.1 bits (200), Expect = 3e-18
Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 8/188 (4%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ I LSV + ++ + + G G NG GK+TLL I ++ +
Sbjct: 3 LEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT 191
+ + + K+ E + E + L + + E A +
Sbjct: 62 GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV----L 117
Query: 192 MQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRIL 249
KK + S G R+ LA L +N I +LD+P +D ++ + +++ + ++ +
Sbjct: 118 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177
Query: 250 VVISHSQD 257
V+IS ++
Sbjct: 178 VIISSREE 185
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (256), Expect = 4e-25
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 22/212 (10%)
Query: 367 LQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ V+F Y + I K+++ ++ VA VG +G GKSTL+ L+ G +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 426 RHNH----LRIAQFHQHLA----EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGK 477
H + + + + + ++ P +E++ A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 136
Query: 478 AQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
+P LS GQ+ R+ A + P +L+LDE T+ LD+E+ + EA
Sbjct: 137 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 196
Query: 528 LNEWDGG--LVLVSHDFRLINQVAHEIWVCEN 557
L+ ++V+H I A +I V EN
Sbjct: 197 LDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 89.5 bits (222), Expect = 1e-20
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 72 DIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAI--------GEI 121
I I+ +S ++ ++ + D L + G +G++G GKSTL+ I G+I
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 122 EASDMSSLEAVISCDEERLKLEKEAEILG----AQEDGGGEQLERVYERLEALDASTAEK 177
+ + + ++ L ++ IL + G E +EA + A
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 178 RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW 237
+ G T ++ SGG + R+++AR NP IL+LDE T+ LDLE+
Sbjct: 136 FIMNLPQGY---DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 192
Query: 238 LEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++E L DR ++++H + I+ ++N +
Sbjct: 193 IQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHI 230
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 98.3 bits (245), Expect = 7e-24
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 17/215 (7%)
Query: 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA 131
++++E+L+ F + L + G LLG +GCGK+T L I +E
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR--- 62
Query: 132 VISCDEERLKLEKEAEILGA--QEDGGGEQLERVYE------RLEALDASTAEKRAAEIL 183
+ D + L + + Q + VYE +++ +KR
Sbjct: 63 IYFGDRDVTYLPPKDRNISMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK 243
L + + + SGG R R+A+ARA+ + P +LL+DEP ++LD + V + +K
Sbjct: 122 ELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 244 K----FDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
K + ++H Q + I M QL
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 98.3 bits (245), Expect = 8e-24
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---- 425
+ FG + L+ + + L+GP+G GK+T L+++ G P +G +
Sbjct: 12 LTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 68
Query: 426 -----RHNHLRIAQFHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGL 474
I+ Q A + M+ + + IK++P +E ++++R A +
Sbjct: 69 DVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 126
Query: 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEALNE 530
P LS GQR RV A +P +LL+DEP ++LD + + + +
Sbjct: 127 EELLNRYP-AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185
Query: 531 WDGGLVLVSHDFRLINQVAHEIWV 554
+ V+HD + I V
Sbjct: 186 LKVTTIYVTHDQVEAMTMGDRIAV 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 98.1 bits (244), Expect = 8e-24
Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 22/225 (9%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---- 425
+ G I K + F ++ L+GPNGAGK+T L++++ + P G+V
Sbjct: 8 LRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 64
Query: 426 ------RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE----EEKMRAAIGRFGLT 475
I+ + +M + + + EE + A GL
Sbjct: 65 NVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG 124
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE---ALNEWD 532
K + S G +++ A P + +LDEPT+ LD+ + + ++
Sbjct: 125 EKIKDRV-STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 533 GGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
+++ SH+ + + I + N + G + + K KA+
Sbjct: 184 LTILVSSHNMLEVEFLCDRIALIHNGTI-VETGTVEELKERYKAQ 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 93.1 bits (231), Expect = 5e-22
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ ++ L +++ E+ G +GL+G NG GK+T L I I+ S
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 132 VISCDEERLKLEKEAEIL----GAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLG 187
+ EE ++ K L GA + G + R A +S E+ G
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEET---LKK 244
+ ++ + +S G ++ +ARAL +NP + +LDEPT+ LD+ + + +
Sbjct: 123 LGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 245 FDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++V SH+ + +C I + N +
Sbjct: 182 EGLTILVSSHNMLEVEFLCDRIALIHNGTI 211
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.4 bits (245), Expect = 9e-24
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 27/215 (12%)
Query: 367 LQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------ 419
L+F VTF Y + +N++ + VALVG +G+GKST+ L+T
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 420 LDGMVRRHNHL-----RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474
+DG R L ++A Q++ L D A E++ A
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNV--HLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 475 TGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524
M LS GQR R+ A R +L+LDE T+ LD E+ ++
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 525 AEALNEWDGG--LVLVSHDFRLINQVAHEIWVCEN 557
AL+E ++++H I + A EI V E+
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTI-EQADEIVVVED 225
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.4 bits (227), Expect = 2e-21
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 15/217 (6%)
Query: 72 DIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSS 128
D+ +++ T+ G ++ + L++ G+ L+G +G GKST+ + I + +
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 72
Query: 129 LEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEK--RAAEILYGL 186
L E L + L +Q + + E+ AA + Y +
Sbjct: 73 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 132
Query: 187 GFNK-------TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE 239
F T+ + SGG R RIA+ARAL + IL+LDE T+ LD E+ ++
Sbjct: 133 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192
Query: 240 ETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
L + +R +VI+H + I+ +++ +
Sbjct: 193 AALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGII 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.2 bits (247), Expect = 9e-24
Identities = 37/198 (18%), Positives = 83/198 (41%), Gaps = 11/198 (5%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
+ F + P + KN++ ++ +A+ G G+GK++LL L+ G+L +G+++
Sbjct: 39 VSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 95
Query: 427 HNHLR-IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP--- 482
+ +QF + + ++ + + + + + +
Sbjct: 96 SGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVS 539
LS GQR+R+ A Y+ + LLD P +LD+ T + + E+ + +LV+
Sbjct: 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 215
Query: 540 HDFRLINQVAHEIWVCEN 557
+ + A +I +
Sbjct: 216 SKMEHL-RKADKILILHQ 232
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.0 bits (223), Expect = 1e-20
Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 18/246 (7%)
Query: 80 VTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEAVISCDEE 138
+ G+ ++ + L + G + G G GK++LL I GE+EAS E +I
Sbjct: 44 LCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-----EGIIKHSG- 97
Query: 139 RLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTR 198
R+ + + Y+ A + +I + T+ +
Sbjct: 98 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL---KKFDRILVVISHS 255
SGG R RI+LARA++ + + LLD P +LD+ + E+ ++ ++++
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 256 QDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSE-----LEENQMKQYKWEQEQIASMK 310
+ L I+ + FY G F + R + + + Q+ E+ + + +
Sbjct: 218 MEHLR-KADKILILHQGSSYFY-GTFSELQSLRPDFSSKLMGYDTFDQFT-EERRSSILT 274
Query: 311 EYIARF 316
E + RF
Sbjct: 275 ETLRRF 280
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 1e-23
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 27/212 (12%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
V+Q +V L V + LVGPNGAGKSTLL M G + G ++
Sbjct: 3 VMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56
Query: 426 ---------RHNHLRIAQFHQHLAEKLDMDMSALQYM-IKEYPGNEEEKMRAAIGRFGLT 475
L + + + + Y+ + ++ E + G L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 116
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYR-------QPHMLLLDEPTNHLDIET---IDSLA 525
K LS G+ RV A + + +LLLDEP N LD+ +D +
Sbjct: 117 DKLGRST-NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 175
Query: 526 EALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
AL + +V+ SHD + AH W+ +
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHAHRAWLLKG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 75.4 bits (185), Expect = 5e-16
Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 15/212 (7%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
++++ ++ + L E+ G L+G NG GKSTLL + + + S A
Sbjct: 4 MQLQDVAESTRLGPL----SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAG 59
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM 192
+ +Q+ + T + ++ L
Sbjct: 60 QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDK 118
Query: 193 QAKKTRDFSGGWRMRIALARAL-------FINPTILLLDEPTNHLDLEACVWLEETLK-- 243
+ T SGG R+ LA + +LLLDEP N LD+ L++ L
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 244 -KFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ +V+ SH + ++ ++
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 95.7 bits (238), Expect = 5e-23
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I++++++ T+ + I+ + L + G ++G +G GKST+L IG ++
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 129 L----EAVISCDEERLKLEKEAEILGAQED---------GGGEQLERVYERLEALDASTA 175
+ D++ L + +I + +L +++ A+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235
KRA E L + K SGG + R+A+ARAL NP I+L D+PT LD +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 236 VWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ + L ++ + +VV++H + II++++ ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEV 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 78.0 bits (192), Expect = 6e-17
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 36/223 (16%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLD----SRVALVGPNGAGKSTLLKLMTGDLVPLDG 422
++ VT Y I L V+L+ V+++GP+G+GKST+L ++ P +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALK-NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 423 MV---------------RRHNHLRIAQFHQHLAEKLDMDMSALQYM-----IKEYPGNEE 462
V + +I Q L ++AL+ + K
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSG 118
Query: 463 EKMRA----AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
E+ R + L + LS GQ+ RV A P ++L D+PT LD
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 519 ----ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
+ + L + E +V+V+HD + + I ++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKD 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 95.7 bits (238), Expect = 7e-23
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 22/213 (10%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+L V F Y I +++ F +S +A GP+G GKST+ L+ P G +
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 426 RH----NHLRIAQFHQHLA-----EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTG 476
+++ + + + + +E + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 477 KAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
+ MP + +S GQR R+ A R P +L+LDE T LD E+ + +
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 527 ALNEWDGG--LVLVSHDFRLINQVAHEIWVCEN 557
AL+ G ++++H I A +I+ E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEK 212
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.8 bits (202), Expect = 4e-18
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 24/220 (10%)
Query: 73 IRIESLSVTFHGHDLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLE 130
+ + + + I+ E G +G GKST+ + + + +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE--- 58
Query: 131 AVISCDEERLKLEKEAEI--------------LGAQEDGGGEQLERVYERLEALDASTAE 176
I+ D + + G + LE Y +
Sbjct: 59 --ITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLA 116
Query: 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236
+ + T ++ SGG R R+A+ARA NP IL+LDE T LD E+
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 237 WLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+++ L R +VI+H + I ++ Q+
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQI 215
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 94.6 bits (235), Expect = 2e-22
Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 15/216 (6%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE-- 130
+R+ + F + + LE+ G LLG +GCGK+T L I +E +
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 131 ---AVISCDEERLKLEKEAEILGAQEDG-----GGEQLERVYERLEALDASTAEKRAAEI 182
+ + + Q +L + ++R E+
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL---- 238
LG + + +K R+ SGG R R+AL RA+ P + L+DEP ++LD + V +
Sbjct: 124 AELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 239 EETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++ ++ + ++H Q + I M L
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 90.0 bits (223), Expect = 5e-21
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 27/208 (12%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP---------- 419
V FG + + + V + L+GP+G GK+T L+++ G P
Sbjct: 9 VWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65
Query: 420 -----LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPG----NEEEKMRAAIG 470
G+ IA Q A M + + ++++R
Sbjct: 66 LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE 125
Query: 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEA 527
GLT P + LS GQR RV R+P + L+DEP ++LD + + + +
Sbjct: 126 LLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 528 LNEWDG-GLVLVSHDFRLINQVAHEIWV 554
L G + V+HD + I V
Sbjct: 185 LQRQLGVTTIYVTHDQVEAMTMGDRIAV 212
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 94.1 bits (234), Expect = 3e-22
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 31/229 (13%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+ + L + GH+++ L+ G ++G +G GKST L I +E E
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGA 58
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLER-----------------VYE-------RLE 168
I + + + L ++ + D +L R V E ++
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 169 ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
L A +RA + L +G ++ Q K SGG + R+++ARAL + P +LL DEPT+
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 229 HLDLEACVWLEETLKKFDRI---LVVISHSQDFLNGVCTNIIHMQNKQL 274
LD E + +++ +VV++H F V +++I + ++
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 90.3 bits (224), Expect = 7e-21
Identities = 43/217 (19%), Positives = 88/217 (40%), Gaps = 35/217 (16%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV----R 425
+ +G + + K + ++++G +G+GKST L+ + P +G + +
Sbjct: 8 LHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQ 64
Query: 426 RHNHLRIAQFHQHLAEK------------------LDMDMSALQYM------IKEYPGNE 461
N +R +A+K L M+ L+ + + ++
Sbjct: 65 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD 124
Query: 462 -EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
E+ + + G+ +AQ +LS GQ+ RV A +P +LL DEPT+ LD E
Sbjct: 125 ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 184
Query: 521 IDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWV 554
+ + + + +V+V+H+ V+ +
Sbjct: 185 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.1 bits (231), Expect = 6e-22
Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 24/225 (10%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL--- 129
+R E++ F + + +N G ++G NG GKSTL+ I +D +
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 130 --EAVISCDEERLKLEKEA---------------EILGAQEDGGGEQLERVYERLEALDA 172
+ E +L + G L ++ +
Sbjct: 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
Query: 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
++A +IL L + +K + SGG + + RAL NP ++++DEP +
Sbjct: 125 EEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183
Query: 233 EACVWLEET---LKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ LK ++I H D + ++ M N Q+
Sbjct: 184 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.1 bits (231), Expect = 6e-22
Identities = 40/224 (17%), Positives = 74/224 (33%), Gaps = 34/224 (15%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV- 424
+L+ + + + + V+ ++GPNG+GKSTL+ ++TG L +G V
Sbjct: 4 ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 425 --------------RRHNHLRIAQFHQH-----------LAEKLDMDMSALQYMIKEYPG 459
+ +R Q Q + E + K++
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 460 NEE---EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
EE EK + L+ LS GQ V P M+++DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKA-GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 517 DIETIDSLAE---ALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
+ L +++ H ++ ++V N
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 92.7 bits (230), Expect = 7e-22
Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 9/211 (4%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAI-GEIEASDMSSLEA 131
+ ++SL V + I +L++ G+ L+G NG GK+T L+AI G + A +
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 132 VISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLE-----ALDASTAEKRAAEILYGL 186
+ + I E VYE L D ++ I
Sbjct: 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD---LEACVWLEETLK 243
K + SGG + +A+ RAL P +L++DEP+ L + + + +
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 244 KFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ ++++ + V ++ Q+
Sbjct: 187 QEGTTILLVEQNALGALKVAHYGYVLETGQI 217
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 83.0 bits (205), Expect = 1e-18
Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 21/212 (9%)
Query: 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
VL+ + Y K +D V V L+G NGAGK+T L + G + G +
Sbjct: 5 IVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 425 RRHNHLRIA---------------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAI 469
+ + + E + + ++ + +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 470 GRF-GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE-- 526
F L + + + LS G++ + +P +L++DEP+ L + + E
Sbjct: 124 SLFPRLKERLKQLG-GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 527 -ALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
+N+ ++LV + +VAH +V E
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLET 214
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 1e-21
Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 28/214 (13%)
Query: 368 QFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG----------- 415
F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+
Sbjct: 3 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 62
Query: 416 DLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLT 475
D L ++ Q + + ++ S + + PG EK+ A G
Sbjct: 63 DGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 476 GKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA 525
+ LS GQR R+ A P +L+ DE T+ LD E+ +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 526 EALNEWDGGL--VLVSHDFRLINQVAHEIWVCEN 557
+++ G ++++H + + A I V E
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEK 212
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.7 bits (199), Expect = 8e-18
Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 32/225 (14%)
Query: 72 DIRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAIG---------- 119
DI ++ + ++ + L + G G++G +G GKSTL I
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 120 -----EIEASDMSSLEAVISC---DEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD 171
++ +D + L + D L I A E++ + A D
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 172 ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
I T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD
Sbjct: 121 ---------FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Query: 232 LEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQL 274
E+ + + K R +++I+H + II M+ ++
Sbjct: 172 YESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 215
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 88.8 bits (220), Expect = 2e-20
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 26/223 (11%)
Query: 73 IRIESLSVTFHGHDLIV----DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128
I++ +++ FH + + L + G+ YG++G +G GKSTL+ + +E
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--- 58
Query: 129 LEAVISCDEERLKLEKEAEILGAQED-GGGEQ----------LERVYERLEA--LDASTA 175
E + D + L E+E+ A+ G Q V LE
Sbjct: 59 -EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117
Query: 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEAC 235
++R E+L +G + SGG + R+A+ARAL NP +LL DE T+ LD
Sbjct: 118 KRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 236 ----VWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
L++ ++ +++I+H D + +C + + N +L
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 84.9 bits (210), Expect = 3e-19
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 27/198 (13%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR--------------RHNH 429
N+ V ++G +GAGKSTL++ + P +G V
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81
Query: 430 LRIAQFHQHLAEKLDMDMSALQYM-----IKEYPGNE-EEKMRAAIGRFGLTGKAQVMPM 483
+I QH L + + + P +E + ++ + GL K P
Sbjct: 82 RQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP- 138
Query: 484 KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAEALNEWDG-GLVLVS 539
NLS GQ+ RV A P +LL DE T+ LD +I L + +N G ++L++
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 540 HDFRLINQVAHEIWVCEN 557
H+ ++ ++ + V N
Sbjct: 199 HEMDVVKRICDCVAVISN 216
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 6e-20
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 11/211 (5%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
+++++++ + + D L+++ G +G +GCGKSTLL I +E L +
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF-I 59
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQL---ERVYE--RLEALDASTAEKRAAEILYGLG 187
+ + Q L E + +L +R ++ L
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 188 FNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL----EETLK 243
+ +K + SGG R R+A+ R L P++ LLDEP ++LD V + K
Sbjct: 120 LAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 244 KFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+ R ++ ++H Q + I+ + ++
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 84.6 bits (209), Expect = 3e-19
Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 21/205 (10%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP------LDGM 423
V +G + ++ K+++ + V VGP+G GKSTLL+++ G +
Sbjct: 6 VTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 62
Query: 424 V------RRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTG 476
+ Q + + + + +++ L
Sbjct: 63 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH 122
Query: 477 KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDG 533
P K LS GQR RV +P + LLDEP ++LD + L++ G
Sbjct: 123 LLDRKP-KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 534 GLV-LVSHDFRLINQVAHEIWVCEN 557
+ V+HD +A +I V +
Sbjct: 182 RTMIYVTHDQVEAMTLADKIVVLDA 206
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (210), Expect = 4e-19
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 30/227 (13%)
Query: 360 GKLPPPVLQ----FVEVTFGY--TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM 413
G L P L+ F +V+F Y PD L+ + L F + ALVGPNG+GKST+ L+
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 414 TGDLVP------LDGMVRRHNHLR--------IAQ----FHQHLAEKLDMDMSALQYMIK 455
P LDG R + Q F + L E + ++ M +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 456 EYPGNEEEKMRAAIGRFGLTGKAQVMPM-KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ + I +V LS GQR V A R+P +L+LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 515 HLDIET----IDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
LD + L E+ + ++L++ L+ + A I E
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEG 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.7 bits (199), Expect = 1e-17
Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 28/235 (11%)
Query: 62 GVLCSHPLSRDIRIESLSVTFHGHDLIV---DSELELNYGRRYGLLGLNGCGKSTLLTAI 118
G+L L ++ + +S + ++ L G L+G NG GKST+ +
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 119 -GEIEASDMSSLEAVISCDEERLKLEKEAEI-----LGAQE---------DGGGEQLERV 163
+ + + D + L + + QE + L +
Sbjct: 61 QNLYQPTGGQ-----LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK 115
Query: 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223
E A+ + I T + SGG R +ALARAL P +L+L
Sbjct: 116 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 175
Query: 224 DEPTNHLDLEACVWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
D+ T+ LD + + +E+ L +++ R +++I+ + +I+ ++ +
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAI 229
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 79.7 bits (196), Expect = 2e-17
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 19/193 (9%)
Query: 383 YKNLDFGVDLDSR---VALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RHNHL 430
N VD + L+GP GAGKS L+L+ G + P G VR
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA--AIGRFGLTGKAQVMPMKNLSD 488
I Q A + + E R + G+ P LS
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSG 129
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWDGGLVL-VSHDFRL 544
G+R RV A QP +LLLDEP + +D++T + + +L V+HD
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 545 INQVAHEIWVCEN 557
+A E+ V N
Sbjct: 190 AAMLADEVAVMLN 202
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.0 bits (150), Expect = 2e-11
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 10/196 (5%)
Query: 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKE 145
+ ++ + E+ LLG G GKS L I I D + + D L E+
Sbjct: 13 NFRLNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR-LNGADITPLPPERR 70
Query: 146 AEILGAQEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSG 202
Q+ + L ++ ++R E+ LG + +K SG
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSG 129
Query: 203 GWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILVVISHSQDF 258
G R R+ALARAL I P +LLLDEP + +D L ++FD ++ ++H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 259 LNGVCTNIIHMQNKQL 274
+ + M N ++
Sbjct: 190 AAMLADEVAVMLNGRI 205
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.7 bits (196), Expect = 2e-17
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 23/193 (11%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR--------------RHNH 429
N++ ++ R ++GP+GAGK+T ++++ G VP G +
Sbjct: 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81
Query: 430 LRIAQFHQHLAEKLDM---DMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKN 485
+I Q A ++ + A + E +++ + P +
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE- 140
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD---IETIDSLAEALNEWDGG-LVLVSHD 541
LS Q+ RV A + P +LLLDEP ++LD ++ +L + + G L++VSHD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 542 FRLINQVAHEIWV 554
I +A + V
Sbjct: 201 PADIFAIADRVGV 213
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 75.1 bits (184), Expect = 8e-16
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 16/217 (7%)
Query: 73 IRIESLSVTFHGHDLIV--DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLE 130
I ++++S F ++ + + + G R+G+LG +G GK+T + I ++ L
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 131 ---AVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE------RLEALDASTAEKRAAE 181
+++ + + + ++ +I + +E + KR E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 182 ILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL--- 238
+ L + + R+ SG + R+ALARAL +P++LLLDEP ++LD
Sbjct: 124 VAKILDIHHVLN-HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 239 -EETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
+E + L+V+SH + + + + +L
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.3 bits (187), Expect = 3e-16
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+++ ++ + N NL V+ ++GP GAGK+ L+L+ G VP G +
Sbjct: 1 MIEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 426 RHNHLR---------IAQFHQHLAEKLDMDMSALQ---YMIKEYPGNEEEKMRAAIGRFG 473
IA +Q+ + L M+ + + ++ + +++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNE 530
+ P+ LS G++ RV A P +LLLDEP + LD T + L++
Sbjct: 117 IEHLLDRNPLT-LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 531 WDG-GLVLVSHDFRLINQVAHEIWVCEN 557
+ ++ ++HD +A I V +
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMD 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 72.4 bits (177), Expect = 5e-15
Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 9/208 (4%)
Query: 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV 132
I IESLS + L + L++ G + +LG G GK+ L I D + +
Sbjct: 2 IEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-L 59
Query: 133 ISCDEERLKLEKEAEILGAQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNK 190
D L EK Q +++ E + KR + L
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119
Query: 191 TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDR 247
+ + SGG + R+ALARAL NP ILLLDEP + LD E L K ++
Sbjct: 120 LLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 248 ILVV-ISHSQDFLNGVCTNIIHMQNKQL 274
+ V+ I+H Q + I + + +L
Sbjct: 179 LTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 72.3 bits (176), Expect = 2e-15
Identities = 18/165 (10%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
++ + G G GK+TL+K + L + + + + I
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEG---KKKI 58
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+K+ + G + + + ++++DE
Sbjct: 59 FSSKFFTSKKLVGSYGVN--------VQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110
Query: 515 HLDI--ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEN 557
+ D + + +++ + +V R ++ + EI
Sbjct: 111 MELFSKKFRDLVRQIMHDPNVNVVATIPI-RDVHPLVKEIRRLPG 154
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.1 bits (126), Expect = 8e-09
Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 23/177 (12%)
Query: 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQ 159
+ + G G GK+TL+ I E +E R E
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIG----FWTEEVRDP----------------ET 41
Query: 160 LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219
+R R+ + + + + + A A
Sbjct: 42 KKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRK 101
Query: 220 ILLLDEPTNHLDLEACV--WLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274
++++DE + + + + +V +D + I + L
Sbjct: 102 VIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP-LVKEIRRLPGAVL 157
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 7e-05
Identities = 28/165 (16%), Positives = 44/165 (26%), Gaps = 14/165 (8%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH--------NHLRIAQFHQHLAEKLDMDM 447
V L GP+GAGKSTLLK + + + G H +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIA 62
Query: 448 SALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP------MKNLSDGQRSRVVFAWLAY 501
+ E+ GN + A+ + V+ +F
Sbjct: 63 AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS 122
Query: 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN 546
L + LA A + + D +IN
Sbjct: 123 LDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIIN 167
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (82), Expect = 0.004
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 4/145 (2%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
+V + G AGKS+LL + G + + + + L + +A +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA--GLR 60
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ E + A + M +D ++ R P L + N
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120
Query: 515 HLDIETIDSLAEALNEWDGGLVLVS 539
DI +N L+ +S
Sbjct: 121 KADITGETLGMSEVNGHA--LIRLS 143
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 582 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.69 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.54 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.21 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.08 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.94 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.75 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.24 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.91 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.88 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.43 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.38 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.04 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.04 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.02 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.95 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.9 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.88 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.82 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.69 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.67 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.67 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.66 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.62 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.62 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.6 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.6 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.59 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.58 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.57 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.53 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.51 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.49 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.44 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.43 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.4 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.39 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.38 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.37 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.37 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.37 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.3 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.29 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.27 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.27 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.27 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.27 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.26 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.26 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.1 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.06 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.06 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.05 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.01 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.0 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.93 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.91 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.89 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.89 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.85 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.85 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.84 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.81 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.81 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.8 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.8 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.79 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.75 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.75 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.74 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.72 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.72 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.68 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.68 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.61 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.6 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.6 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.6 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.59 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.57 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.56 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.56 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.54 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.54 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.54 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.52 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.52 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.52 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.51 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.51 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.49 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.47 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.47 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.47 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.46 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.45 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.45 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.44 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.44 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.44 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.42 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.42 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.41 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.4 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.39 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.39 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.37 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.35 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.32 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.31 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.28 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.26 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.26 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.23 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.2 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.2 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.17 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.17 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.17 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.16 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.15 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.13 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.12 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.08 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.03 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.97 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.95 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.95 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.93 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.92 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.92 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.91 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.89 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.87 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.86 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.85 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.8 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.79 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.75 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.74 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.68 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.65 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.65 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.64 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.62 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.62 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.61 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.58 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.57 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.54 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.52 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.5 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.5 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.5 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.49 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.46 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.39 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.38 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.34 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.33 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.31 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.3 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.3 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.29 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.29 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.27 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.25 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.25 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.24 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.23 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.21 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.21 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.2 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.18 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.17 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.16 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.15 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.11 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.07 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.06 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.04 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.03 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.02 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.98 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.96 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.92 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.86 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.84 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.82 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.8 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.78 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.78 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.76 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.75 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.72 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.59 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.56 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.54 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.52 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.51 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.47 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.45 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.44 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.42 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.41 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.37 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.37 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.36 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.34 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.31 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.28 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.26 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.26 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.22 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.22 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.21 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.18 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.17 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.17 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.15 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.15 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.13 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.12 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.11 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.09 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.07 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.01 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.01 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.99 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.97 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.97 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.96 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.95 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.93 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.91 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.88 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.78 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.77 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.74 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.69 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.59 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.58 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.58 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.55 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.53 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.52 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.51 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.46 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.43 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.39 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.29 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.26 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.26 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.25 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.22 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.19 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.19 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.15 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.02 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.01 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.0 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.99 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.89 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.86 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.84 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.78 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.77 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.73 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.73 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.73 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.68 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.58 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.56 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.55 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.52 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.51 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.47 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.45 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.44 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.42 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.37 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.35 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.32 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.31 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.28 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.27 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.26 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.24 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.07 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.8 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.78 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.64 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.58 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.53 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.47 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.41 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.38 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.37 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.33 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.31 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.11 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.91 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.89 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.86 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.76 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.36 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.91 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.85 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.71 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.7 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.64 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.62 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.24 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.19 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.14 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.08 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.06 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.05 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.02 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.98 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.97 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.85 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.39 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.28 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.21 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.14 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.09 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.08 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.0 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.84 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.7 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.62 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.51 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.41 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.4 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.38 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.21 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.87 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.78 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.47 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.33 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.04 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.84 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.54 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.5 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.47 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.22 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.96 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.75 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.74 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.45 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.99 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.97 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 82.47 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.27 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.25 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.01 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.99 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.8 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 81.6 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.56 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 81.47 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.45 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.98 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-49 Score=388.70 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=174.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
.|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|...+. ..+||++
T Consensus 6 ~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 489999999996 578999999999999999999999999999999999999999999988653 3599999
Q ss_pred hhhhhhcCCcccHHHHHHhcC-----CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEY-----PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|++ .+.+..|+.+++.... +. ...+++.++|+.+||.+... +++.+|||||||||+|||||+.+|+|||||
T Consensus 85 Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRvaiAraL~~~P~iLllD 161 (239)
T d1v43a3 85 QSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMD 161 (239)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred ech--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence 986 3666789999876432 11 12456889999999987665 456899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||+|||+.++..+.+.|.++ +.|||+||||++++.++||||++|++|+|+ .+|+++++...
T Consensus 162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~~ 227 (239)
T d1v43a3 162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYLR 227 (239)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhC
Confidence 999999999999998888764 789999999999999999999999999997 59999998653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-50 Score=389.16 Aligned_cols=202 Identities=23% Similarity=0.292 Sum_probs=149.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEech
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQ 437 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q 437 (582)
|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|...+. ..+||++|
T Consensus 1 Iev~nv~k~yg-~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence 68999999996 578999999999999999999999999999999999999999999988753 35999999
Q ss_pred hhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007982 438 HLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDE 511 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 511 (582)
++ .+.+..|+.+++... .+.. ..+++.++|+.++|.+... +++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-~~~~~LSGGqkQRvaiAraL~~~P~illlDE 156 (232)
T d2awna2 80 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 156 (232)
T ss_dssp SC--CC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEES
T ss_pred cc--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 96 356677888877532 1222 3467899999999987655 5568999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 512 PTNHLDIETIDSLAEALNE----WDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
||+|||+.++..+++.|.+ .+.|||+||||++++.++||||++|++|+|+ +.|+++++.++
T Consensus 157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~~ 221 (232)
T d2awna2 157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYHY 221 (232)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHhC
Confidence 9999999999998887765 4789999999999999999999999999997 58999998753
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-49 Score=388.30 Aligned_cols=202 Identities=23% Similarity=0.306 Sum_probs=177.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------e
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------L 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~ 430 (582)
.|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|...+. .
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred cEEEEeEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 589999999996 478999999999999999999999999999999999999999999987542 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.+++++|++ .+.+.+|+.+++... .+.. ..+++.++++.+||.+... +++++|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-~~p~~LSGGqkQRv~IAraL~~~P 158 (240)
T d1g2912 82 DIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKP 158 (240)
T ss_dssp SEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCC
Confidence 599999996 366778898887532 1211 2456899999999987655 556899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||||++|++|+|+ +.|+++++..
T Consensus 159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv-~~G~~~el~~ 229 (240)
T d1g2912 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD 229 (240)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999888653 789999999999999999999999999997 4899999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.2e-49 Score=384.06 Aligned_cols=201 Identities=22% Similarity=0.269 Sum_probs=177.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++||+++|++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 mi~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 1 MIEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp CEEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEeCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence 5899999999963 5899999999999999999999999999999999999999999998763 2589999
Q ss_pred hhhhhhcCCcccHHHHHHhc---CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 437 QHLAEKLDMDMSALQYMIKE---YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
|++. +.+.+|+.+++... ......+++.++++.+++.+... +++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~~--l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt 155 (229)
T d3d31a2 79 QNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (229)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cccc--cCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHh-CChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence 9863 56678898887532 12234567999999999987765 566899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 514 NHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+++ ++|+++++.+
T Consensus 156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el~~ 217 (229)
T d3d31a2 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIFE 217 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999888653 679999999999999999999999999997 6999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.2e-49 Score=384.72 Aligned_cols=203 Identities=23% Similarity=0.303 Sum_probs=177.7
Q ss_pred eEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------e
Q 007982 366 VLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------L 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------~ 430 (582)
.|+++||+++|+. ...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 4899999999963 357899999999999999999999999999999999999999999987542 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcC--CCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEY--PGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
++||++|++. +.+.+|+.+++.... ... ..+++.++++.+||++... +++.+|||||||||+|||||+.+|
T Consensus 83 ~ig~vfQ~~~--L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEecccc--ccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhh-CChhhCCHHHHhHHHHHhHHhhcc
Confidence 5999999863 666789999886432 111 2456899999999987655 455899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||||||||++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+|+ +.|+++++..
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv-~~g~~~el~~ 230 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD 230 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999887664 679999999999999999999999999997 5999999875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-49 Score=386.41 Aligned_cols=203 Identities=23% Similarity=0.325 Sum_probs=176.8
Q ss_pred eEEEEEEEEEecCCc---eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPDN---LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
||+++||+++|+.+. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 589999999997542 5899999999999999999999999999999999999999999988653
Q ss_pred -eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 430 -LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 430 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
..+++++|++ .+.+..|+.+++... .+.. ..+++.++|+.+||.+... +++.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-SCBSCCCHHHHHHHHHHHHHHT
T ss_pred hcccccccccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHhhhhcc
Confidence 2499999986 356678898887532 2322 3467899999999987765 4558999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|+|+ ++|+++++.+
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv-~~G~~~ei~~ 230 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVFS 230 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE-EEEETTTTTC
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999888764 789999999999999999999999999997 5888887643
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9e-49 Score=380.75 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=168.1
Q ss_pred eEEEEEEEEEecCCc---eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPDN---LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
||+++||+++|+.+. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 589999999996432 4799999999999999999999999999999999999999999998763
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc-----CCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
..++|++|++. +.+..|+.+++... .... ..+++.++|+.+||.+...++++.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecchh--hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 14999999963 56778898876531 1111 23467889999999765444556899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
||+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++ ++||||++|++|+|+. +|+
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~-~g~ 228 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEK 228 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE-ecc
Confidence 999999999999999999999999999988764 67999999999987 7999999999999974 554
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.9e-48 Score=382.67 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=175.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------- 429 (582)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~Lev~nl~k~yg-~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 489999999996 478999999999999999999999999999999999999999999987652
Q ss_pred --------eeEEEechhhhhhcCCcccHHHHHHhc---CCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHH
Q 007982 430 --------LRIAQFHQHLAEKLDMDMSALQYMIKE---YPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 430 --------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv 494 (582)
.++++++|++. +.+..++.+++... .... ..+++.++++.+|+.+...++++.+|||||||||
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~--l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp HHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred HhHHHHHhcceEEEEechh--hccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence 24899999863 55677888776432 1111 2456889999999987554455689999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||+||++|+|+ ++|+++++.
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev~ 237 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 237 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999999999999999888764 579999999999999999999999999997 589999986
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
.
T Consensus 238 ~ 238 (258)
T d1b0ua_ 238 G 238 (258)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3e-48 Score=378.40 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=168.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
.|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+|+|+|+..|+.|. +.+++.... .......++
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~----I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR----IYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCE----EEEcceecccCCcccceEE
Confidence 599999999999999999999999999999999999999999999999999998554 333322210 000111233
Q ss_pred --cccCC---CcchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQEDG---GGEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|... ..++.+++.. .+..++..+.++++.++|+.+||.+ ..++++.+|||||||||+|||||+.+|+||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRvaiAraL~~~P~iLll 160 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHhhhccCCCceee
Confidence 22221 1233333322 2235667788899999999999975 67999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||||++|||.++..++++|+++ +.|+|+||||++++..+||||++|++|+|+ ..|++++++.
T Consensus 161 DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~ 226 (239)
T d1v43a3 161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYL 226 (239)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999988664 789999999999999999999999999997 5688887654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-47 Score=377.39 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=174.9
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------e
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------L 430 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~ 430 (582)
.+++|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 3 sd~~Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp CSEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred cceEEEEeeEEEEEC-CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 357899999999996 478999999999999999999999999999999999999999999998763 1
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcC----CCC-hHHHHHHHHHhc-CCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEY----PGN-EEEKMRAAIGRF-GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|... +...+|+.+++.... ... ..+.+..++..+ ++.+.. ++++++|||||||||+|||||+.+|
T Consensus 82 gi~~~~q~~~--l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~LSGG~~Qrv~iAraL~~~P 158 (240)
T d1ji0a_ 82 GIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp TEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccccCcccc--cCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHH-hCchhhCCHHHHHHHHHHHHHHhCC
Confidence 3788888753 556788888765321 111 234456667766 566544 4567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+|+ ++|+++++.+
T Consensus 159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~ 228 (240)
T d1ji0a_ 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHHT
T ss_pred CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhc
Confidence 999999999999999999999988765 679999999999999999999999999997 6999999875
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-48 Score=378.06 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=142.3
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc-
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG- 150 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~- 150 (582)
|+++||+|+|++..+|+|+||+|++||+++|+||||||||||+|+|+|+..|+.|. +.+++.... .......++
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~----I~i~g~~i~~~~~~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD----LFIGEKRMNDTPPAERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEESSSCCTTSCGGGTCEEE
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCE----EEECCEECCCCchhhceeee
Confidence 68999999999999999999999999999999999999999999999999988554 333332210 000111233
Q ss_pred -cccCCC---cchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 151 -AQEDGG---GEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 151 -~~~~~~---~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+|.+.. .+..+++.. .+..++..+.++++.++|+.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD 155 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEE
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 232211 122333322 2234556778889999999999975 678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 225 EPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|||++||+.++..+++.|++ .+.|+|+||||++++..+||||++|++|+|+ ..|++++++.
T Consensus 156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~ 220 (232)
T d2awna2 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 220 (232)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 99999999999999888765 4789999999999999999999999999997 4688877654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.3e-47 Score=374.44 Aligned_cols=209 Identities=24% Similarity=0.356 Sum_probs=170.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-------HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-------LEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-------~~~ 144 (582)
.|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+|+|+|+..|+.|.+ .+++.... ...
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I----~~~g~~i~~~~~~~~~~~ 78 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI----YIGDKLVADPEKGIFVPP 78 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEEEEEGGGTEECCG
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEE----EECCEEecccchhhhccc
Confidence 5899999999999999999999999999999999999999999999999999986543 22221110 000
Q ss_pred HHHHhc--cccC---CCcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 145 EAEILG--AQED---GGGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 145 ~~~~~~--~~~~---~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
....++ +|.+ +..++.+++... +...+..+.++++.++++.+|+.+ ..+++|++|||||||||+|||||+.+
T Consensus 79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-~~~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 011222 2322 123445555443 345677888899999999999975 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|+||||||||++||+.++..+++.|++ ++.|||+||||++++..+||||++|++|+|+. .|++++++.
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~-~G~~~el~~ 229 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVYD 229 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 999999999999999999999998865 47899999999999999999999999999975 578877654
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-47 Score=371.79 Aligned_cols=208 Identities=26% Similarity=0.420 Sum_probs=169.1
Q ss_pred ceEEeeeEEEECCe----eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------HH
Q 007982 72 DIRIESLSVTFHGH----DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------LK 141 (582)
Q Consensus 72 ~i~v~nls~~y~~~----~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------~~ 141 (582)
+|+++||+|+|++. .+|+||||+|++||+++|+||||||||||+++|+|+.+|+.|.+ .+++.. ..
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I----~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV----LVDGQELTTLSESE 76 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEE----EETTEEECTTCHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCce----EEcCeEeeeCChhh
Confidence 58999999999643 68999999999999999999999999999999999999986543 222211 11
Q ss_pred HHHHHHHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 142 LEKEAEILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 142 ~~~~~~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
.......+++ |... ...+.+++...+ ..++..+.++++.++|+.+||.+ ..++++.+|||||||||+|||||
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-~~~~~~~~LSGG~~QRvaiAraL 155 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARAL 155 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-TTSSCBSCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHhhhh
Confidence 1112233432 3221 234556655444 34677788899999999999975 57899999999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|+||||||||++||+.++..+++.|+++ +.|+|+||||++++..+||||++|++|+|+ +.|++++++
T Consensus 156 ~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv-~~G~~~ei~ 229 (240)
T d3dhwc1 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 229 (240)
T ss_dssp HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE-EEEETTTTT
T ss_pred ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999999988653 789999999999999999999999999997 467776654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.8e-47 Score=377.15 Aligned_cols=205 Identities=20% Similarity=0.250 Sum_probs=176.4
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~ 432 (582)
.+|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 3 ~iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 3 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred ceEEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 4799999999996 478999999999999999999999999999999999999999999998763 138
Q ss_pred EEechhhhhhcCCcccHHHHHHhc-----------------CCCC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKE-----------------YPGN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~-----------------~~~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
+|++|.+. +....|+.+++... .... ..+++.++++.+++.... ++++++||||||||
T Consensus 82 ~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 82 VRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKL 158 (254)
T ss_dssp EECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHH
T ss_pred CccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-cCchhhCCcHHHHH
Confidence 89999864 45567888876421 0111 134677889999998654 46779999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+|+ .+|++++.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv-~~g~~~e~ 237 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEEE 237 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHHH
T ss_pred HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE-EEecHHHH
Confidence 99999999999999999999999999999999888654 679999999999999999999999999997 58999887
Q ss_pred HHHH
Q 007982 571 KLHL 574 (582)
Q Consensus 571 ~~~~ 574 (582)
.+..
T Consensus 238 ~~~~ 241 (254)
T d1g6ha_ 238 IKNV 241 (254)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 6543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.6e-47 Score=369.89 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=175.4
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEEEec
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIAQFH 436 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~~~~ 436 (582)
|.++||+++|+ ++.+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|...+. ..++|++
T Consensus 3 I~v~nl~k~yg-~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 3 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEeEEEEEC-CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 78999999996 578999999999999999999999999999999999999999999988653 3589999
Q ss_pred hhhhhhcCCcccHHHHHHh---cCCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIK---EYPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|.. .+....++.+++.. .+... ..+.++.+++.+++.+... +++++|||||||||+|||||+.+|++||||
T Consensus 82 q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 82 EEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp TTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ecc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 974 35566778777632 11211 2345788899999987654 567999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|||+|||+.++..+.++|+++ +.|||++|||++++..+||||++|++|+|+ ++|+++++++.
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~~ 223 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKER 223 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhc
Confidence 999999999999999988764 679999999999999999999999999997 69999999764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-46 Score=363.96 Aligned_cols=200 Identities=28% Similarity=0.378 Sum_probs=160.5
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------H
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------K 141 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~ 141 (582)
+|+++||+|+|+. ..+|+|+||+|++||++||+||||||||||+++|+|+..|+.|.+ .+++..+ .
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I----~~~g~~i~~~~~~~ 76 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV----YIDNIKTNDLDDDE 76 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCccee----EECCEEcCcCChhh
Confidence 5899999999963 248999999999999999999999999999999999999885543 3332111 1
Q ss_pred HHHH-HHHhc--cccC---CCcchHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 142 LEKE-AEILG--AQED---GGGEQLERVYERLE-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~~-~~~~~--~~~~---~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
.... ...++ +|.+ +..++.+++...+. ..+..+..+++.++|+.+||.+...+++|.+|||||||||+|
T Consensus 77 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaI 156 (230)
T d1l2ta_ 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (230)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred cchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHH
Confidence 1111 12343 2332 22345555544332 235566778899999999998766789999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
||||+.+|+||||||||++||+.++..++++|+++ +.|+|+||||++++ ++||||++|++|+|+.
T Consensus 157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (230)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988754 67999999999987 6999999999999974
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.7e-47 Score=366.98 Aligned_cols=205 Identities=26% Similarity=0.318 Sum_probs=164.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||||+|++ .+|+||||+|++||+++|+||||||||||+++|+|+..|+.|. +.+++..+. .......++
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~----I~~~G~~i~~~~~~~r~ig 75 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR----ILLDGKDVTDLSPEKHDIA 75 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE----EEETTEECTTSCHHHHTCE
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCE----EEEccEeccccchhHhcce
Confidence 5899999999987 5899999999999999999999999999999999999988554 333332211 111122343
Q ss_pred c--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ |... ..++.+++...+ ...+. .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~~-~~~~~~~~LSGG~~QRvaiAraL~~~P~iLll 151 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLL 151 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred eeccccccCccccHHHHHHHHHhhccccH---HHHHHHHHHHhcchh-hHhCChhhCCHHHhcchhhhhhhhccCCceee
Confidence 2 2221 234455554333 33332 457999999999975 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||||++||+.++.+++++|++ .+.|||+||||++++..+||||++|++|+++ +.|++++++.
T Consensus 152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el~~ 217 (229)
T d3d31a2 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIFE 217 (229)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHHS
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999998865 3679999999999999999999999999997 5688887653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.3e-46 Score=369.24 Aligned_cols=210 Identities=26% Similarity=0.405 Sum_probs=171.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------------
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------------ 139 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------------ 139 (582)
.|+|+||+|+|++..+|+||||+|++||++||+||||||||||+++|+|+.+|+.|.+ .+++..
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I----~~~G~~i~~~~~~~~~~~ 77 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI----IVNGQNINLVRDKDGQLK 77 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEECCEEECTTSSEE
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCE----EECCEEeccCCccchhcc
Confidence 4899999999999999999999999999999999999999999999999999875543 221111
Q ss_pred ----HHHHHHHHHhc--cccCC---CcchHHHHHHHH---HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 140 ----LKLEKEAEILG--AQEDG---GGEQLERVYERL---EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 140 ----~~~~~~~~~~~--~~~~~---~~~~~~~~~~~l---~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
.........++ +|.+. ...+.+++.... ...+..+..+++.++++.+|+.+...+++|.+||||||||
T Consensus 78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QR 157 (258)
T d1b0ua_ 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 157 (258)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred cccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHH
Confidence 11112223333 23322 234455554432 2456677788999999999998766678899999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|+|||||+.+|+||||||||+|||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+ +.|+++++
T Consensus 158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev 236 (258)
T d1b0ua_ 158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 236 (258)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999999999999999988764 689999999999999999999999999997 56888887
Q ss_pred HH
Q 007982 285 VQ 286 (582)
Q Consensus 285 ~~ 286 (582)
+.
T Consensus 237 ~~ 238 (258)
T d1b0ua_ 237 FG 238 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.5e-47 Score=372.06 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=169.4
Q ss_pred ceEEeeeEEEE--CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH------HH
Q 007982 72 DIRIESLSVTF--HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK------LE 143 (582)
Q Consensus 72 ~i~v~nls~~y--~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~------~~ 143 (582)
.|+++||+|+| +...+|+||||+|++||+++|+||||||||||+++|+|+.+|+.|.+ .+++.... ..
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I----~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL----YFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE----EETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceE----EECCEEeecCchhhcc
Confidence 58999999999 55789999999999999999999999999999999999999985543 22222110 00
Q ss_pred HHHHHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 144 KEAEILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 144 ~~~~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
.....++ +|.. +..++.+++...+. .++..+.++++.++|+.+||++ ..+++|++|||||||||+|||||+.
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~p~~LSGGqkQRvaiARaL~~ 157 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVK 157 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHh-hhhCChhhCCHHHHhHHHHHhHHhh
Confidence 0111232 2322 12345566654433 4567788899999999999974 6799999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+|++|||||||++||+.++..++++|+++ +.|+|+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 158 ~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv-~~g~~~el~~ 230 (242)
T d1oxxk2 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD 230 (242)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999988654 789999999999999999999999999997 4678777654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.6e-46 Score=369.51 Aligned_cols=202 Identities=24% Similarity=0.327 Sum_probs=167.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
||+++||+|+|++.+++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..++|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 5899999999976678999999999999999999999999999999999999999999988653 25899
Q ss_pred echhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|++. .+..|+.+++.... .......+.+.++..++...... ....+|||||||||+|||||+.+
T Consensus 81 v~Q~~~---lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQDSA---IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCSSC---CCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred Eccccc---cCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999863 24568888875332 22334455555555444322111 12357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+. .||||++|++|+|+ ..|+++++.+
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999998875 679999999999885 59999999999997 5999999764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-46 Score=364.11 Aligned_cols=200 Identities=25% Similarity=0.395 Sum_probs=167.7
Q ss_pred EEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 367 LQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 367 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
|+++||+|+|++ .+++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 689999999964 457999999999999999999999999999999999999999999998763 25999
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCC-----------ccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTG-----------KAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|++. .+..|+.+++....+....+++..+++..++.. ... .....|||||||||+|||||+.+
T Consensus 82 v~Q~~~---lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~-~~g~~LSGGq~QRvalARal~~~ 157 (241)
T d2pmka1 82 VLQDNV---LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 157 (241)
T ss_dssp ECSSCC---CTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS-TTTTCCCHHHHHHHHHHHHHTTC
T ss_pred Eecccc---cCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcC-CCCCccCHHHHHHHhhhhhhhcc
Confidence 999863 356799998865444344445555554444321 122 22468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+ +.||+|++|++|+|++ .|+++++..
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~-~G~~~ell~ 226 (241)
T d2pmka1 158 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIVE-QGKHKELLS 226 (241)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGG-TTSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-HhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 57999999999988 5799999999999974 899998864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-45 Score=360.34 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=169.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 149 (582)
.|+|+||+|+|+++.+|+|+||+|++||++||+||||||||||+++|+|+..|+.|.+ .+++... ........+
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i----~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV----TVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEETTTCHHHHHTTE
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE----EECcEecccChHHHHhhE
Confidence 4899999999999999999999999999999999999999999999999999985543 3222211 011112223
Q ss_pred cc--ccC---CCcchHHHH--HHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 GA--QED---GGGEQLERV--YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~~--~~~---~~~~~~~~~--~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
++ +.. ......+++ +..+......+....+..+++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lSgG~~qrv~iA~al~~~p~ill 156 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAI 156 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH-HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 32 211 122333333 334556677778888999999999975 5688999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+||||.++..+.++|+++ +.|||++|||++++..+||||++|++|+++. .|+++++.
T Consensus 157 LDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~ 221 (238)
T d1vpla_ 157 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 221 (238)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999998764 6899999999999999999999999999974 68887765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-45 Score=357.72 Aligned_cols=198 Identities=28% Similarity=0.359 Sum_probs=169.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
.|++ ++.++|+. .. + ||||++. +|+++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 2 ~l~v-~~~k~~g~-~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~ 76 (240)
T d2onka1 2 FLKV-RAEKRLGN-FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CEEE-EEEEEETT-EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEEE-EEEEEECC-EE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence 3677 67888853 33 3 8999995 6899999999999999999999999999999988652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCCCC----hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEYPGN----EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
|++. +.+.+|+.+++....... ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||||
T Consensus 77 Q~~~--l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~-~~~~~LSGG~kQRvaiAral~~~P~illlDEP 153 (240)
T d2onka1 77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred cchh--hcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhh-CChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence 9863 566789999987543221 2356899999999987665 45589999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+|||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+++ +.|+++++..
T Consensus 154 ts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii-~~G~~~el~~ 216 (240)
T d2onka1 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFS 216 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEecHHHHhc
Confidence 9999999999999988664 679999999999999999999999999997 5899998854
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.3e-45 Score=362.51 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=163.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE- 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~- 147 (582)
+|+++||+|+|++..+|+||||+|++||++||+||||||||||+++|+|+.+|+.|. +.+++... .......
T Consensus 6 ~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~----I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK----IIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEECTTCCHHHHHHT
T ss_pred EEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE----EEecccccccccHHHHHHh
Confidence 799999999999999999999999999999999999999999999999999998554 33333221 1111111
Q ss_pred HhccccCC-----CcchHHHHHHHHH-cCChhHHHHHHHHHHHhC-CCChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 148 ILGAQEDG-----GGEQLERVYERLE-ALDASTAEKRAAEILYGL-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 148 ~~~~~~~~-----~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
.+.++++. ..+..+++..... ..+.....+.+.+++..+ ++. ...++++++|||||||||+|||||+.+|++
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l 160 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred cccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 13332221 1233344332221 223444555667777766 564 456889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|||||||+||||.++.+++++|+++ +.|||+||||++++..+||||++|++|+++ +.|+++++..
T Consensus 161 LllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~ 228 (240)
T d1ji0a_ 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHHT
T ss_pred eeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhc
Confidence 9999999999999999999998765 679999999999999999999999999997 4688887654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3e-45 Score=362.18 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=173.5
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|...+. ..++
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 49999999999754 57999999999999999999999999999999999999999999998763 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|+.. .+..|+.+++....+....+++.++++.+++....... ...+|||||||||+|||||+++
T Consensus 96 ~v~Q~~~---lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 96 LVQQDNI---LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp EECSSCC---CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeecccc---CCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 9999752 35679999987655544566777788777764322111 1357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
|+||||||||++||+.+...+.+.|..+ +.|||+||||++.+ ..||||++|++|+|+. .|+++++.+.
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~-~G~~~eLl~~ 242 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVE-TGTHRELIAK 242 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEETTEEEE-EECHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999876 57999999999988 5799999999999975 8999998763
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-45 Score=361.94 Aligned_cols=201 Identities=26% Similarity=0.308 Sum_probs=167.0
Q ss_pred eEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|...+. ..++
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 48999999999754 46999999999999999999999999999999999999999999998763 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCC-----------CccccCCCCCCChhHHHHHHHHHHHc
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLT-----------GKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
|++|++. .+..++.+++.... .....+++.++++..++. ...... +.+|||||||||+|||||+
T Consensus 93 ~v~Q~~~---l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 93 LVSQNVH---LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EECSSCC---CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHH
T ss_pred EEeeccc---cCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCC-CCCcCHHHHHHHHHHHHHh
Confidence 9999863 24456766664432 223455566655555442 222223 3689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+ ..||+|++|++|+|+ ..|+++++.+
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv-~~G~~~eLl~ 239 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIV-ERGTHSELLA 239 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999876 67999999999988 579999999999997 4899999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-45 Score=360.42 Aligned_cols=202 Identities=26% Similarity=0.384 Sum_probs=165.4
Q ss_pred eEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 366 VLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
.|+++||+|+|++. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 49999999999742 46899999999999999999999999999999999999999999998763 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCC-CChHHHH---------HHHHHhc--CCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYP-GNEEEKM---------RAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
+|++|++. + +..|+.+++..... ....... .+.+..+ |+....... ..+|||||||||+|||||
T Consensus 91 ~~v~Q~~~--l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~-~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 91 AAVGQEPQ--V-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA-GSQLSGGQRQAVALARAL 166 (251)
T ss_dssp EEECSSCC--C-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSS-CSSSCHHHHHHHHHHHHH
T ss_pred hhcccccc--c-cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhcc-CccCChhHceEEEEeecc
Confidence 99999863 2 45688888865422 2222121 1233333 333333333 468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 573 (582)
+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+ +.||||++|++|+|++ .|+++++.+.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~-~~aDrI~vl~~G~iv~-~Gt~~eLl~~ 241 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIRE-GGTHQQLMEK 241 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHH-HTCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999999999999764 57999999999988 5699999999999974 8999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.3e-45 Score=361.11 Aligned_cols=209 Identities=20% Similarity=0.256 Sum_probs=164.2
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE 147 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ 147 (582)
.+|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+.+|+.|. +.+++..+ .......
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~----I~~~g~~i~~~~~~~~~~ 78 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR----VYFENKDITNKEPAELYH 78 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEECTTCCHHHHHH
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcE----EEECCEeccchhHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999998554 33333221 1111111
Q ss_pred -Hhcc--ccCC---CcchHHHHHHH-----------H-H---cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHH
Q 007982 148 -ILGA--QEDG---GGEQLERVYER-----------L-E---ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRM 206 (582)
Q Consensus 148 -~~~~--~~~~---~~~~~~~~~~~-----------l-~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrq 206 (582)
.+++ |... .....+++... + . ........+++.++++.+++.. ..++++.+|||||||
T Consensus 79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~Q 157 (254)
T d1g6ha_ 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMK 157 (254)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHH
T ss_pred hcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-hccCchhhCCcHHHH
Confidence 1332 2221 12233333210 0 0 1123445578889999999975 578899999999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
||+|||||+.+|++|||||||+|||+.++..++++|+++ +.|||+||||++++..+||||++|++|+++. .|++++
T Consensus 158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e 236 (254)
T d1g6ha_ 158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 236 (254)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE-EecHHH
Confidence 999999999999999999999999999999999988654 7899999999999999999999999999985 577766
Q ss_pred HH
Q 007982 284 YV 285 (582)
Q Consensus 284 ~~ 285 (582)
..
T Consensus 237 ~~ 238 (254)
T d1g6ha_ 237 EI 238 (254)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.1e-44 Score=346.37 Aligned_cols=205 Identities=25% Similarity=0.356 Sum_probs=163.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
.|++ ++.++|++..+ |+||++. +|+++|+||||||||||+++|+|+.+|+.|. +.+++..+. .......++
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~----I~~~G~~i~~~~~~~r~ig 73 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGE----VRLNGADITPLPPERRGIG 73 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCTTTSCCB
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceE----EEECCEECCcCCHHHcCce
Confidence 4778 67999999775 8999995 6899999999999999999999999998554 333332210 000011233
Q ss_pred c--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 151 A--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+ |... ..++.+++...+...+..+.++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~LSGG~kQRvaiAral~~~P~illlDE 152 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHh-hhhCChhhCCHHHHHHHHHHHHHhccCCceEecC
Confidence 2 3221 23455555444445566777889999999999975 6799999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 226 PTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||++||+.++..+++.|+++ +.|+|+||||++++..+||||++|++|+++. .|+++++..
T Consensus 153 Pts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~~ 216 (240)
T d2onka1 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EecHHHHhc
Confidence 99999999999999988654 7899999999999999999999999999975 688877653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-43 Score=347.97 Aligned_cols=208 Identities=23% Similarity=0.357 Sum_probs=153.2
Q ss_pred ceEEeeeEEEECCe---eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 72 DIRIESLSVTFHGH---DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~---~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.|+++||+|+|+++ .+|+|+||+|++||++|||||||||||||+++|+|+..|+.|. +.+++..+ .....
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~----I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ----LLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCE----EEECCEecchhhhHHH
Confidence 69999999999753 5999999999999999999999999999999999999988543 33333221 22223
Q ss_pred HHHhcc--ccCC--CcchHHHHHHHHHc-CChhHH-----HHHHHHHHHhC--CCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 146 AEILGA--QEDG--GGEQLERVYERLEA-LDASTA-----EKRAAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 146 ~~~~~~--~~~~--~~~~~~~~~~~l~~-~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
...+.+ |.+. ..+..+++...+.. ...... ...+.+.++.+ |+. ...++.+.+|||||||||+||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCChhHceEEEEeec
Confidence 333432 2221 12223333211110 011111 12233445555 343 33466788999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|+.+|+||||||||++||+.+...+++.|.++ ++|+|+||||++.+. .||||++|++|+|+ ..|+++++++
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv-~~Gt~~eLl~ 240 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIR-EGGTHQQLME 240 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999998654 679999999999885 59999999999997 4689888764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-43 Score=343.44 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=151.7
Q ss_pred ceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
.|+++||+|+|+ ++.+|+||||+|++|+++||+||||||||||+++|+|+.+|+.|. +.+++..+ ......
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~----I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ----VLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEETTTSCHHHHH
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCE----EEECCEEecccchhhhh
Confidence 489999999994 467999999999999999999999999999999999999987543 33333221 122223
Q ss_pred HHhccccCCCcchHHHHHHHHH----cCChhHHHH-----HHHHHHHhCCCC-hhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 147 EILGAQEDGGGEQLERVYERLE----ALDASTAEK-----RAAEILYGLGFN-KTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~-----~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
..+++.++........+.+.+. ......... .+.+.+..+... +...+..+..|||||||||+|||||+.
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred ceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc
Confidence 3444322221111112333332 112211111 112223332110 123455678999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHh
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQT 287 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 287 (582)
+|+||||||||++||+.+...+++.|+++ ++|+|+|||+++.+. .||+|++|++|+|+ ..|++++++.+
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv-~~G~~~ell~~ 227 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELLSE 227 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHHHS
T ss_pred ccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence 99999999999999999999999999875 679999999999884 69999999999997 56898887653
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.8e-43 Score=344.59 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=151.6
Q ss_pred ceEEeeeEEEECCe--eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 72 DIRIESLSVTFHGH--DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~--~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
.|+++||+|+|+++ ++|+||||+|++|+++|||||||||||||+++|+|+..|+.|. +.+++... ......
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~----I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH----ILMDGHDLREYTLASLR 88 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE----EEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccE----EEECCcccchhhhhhhh
Confidence 69999999999753 6999999999999999999999999999999999999987543 33333221 222233
Q ss_pred HHhccccCCC----cchHHHHHH-HHHcCChhHHHHH-----HHHHHHhC--CCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 147 EILGAQEDGG----GEQLERVYE-RLEALDASTAEKR-----AAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 147 ~~~~~~~~~~----~~~~~~~~~-~l~~~~~~~~~~~-----~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
..+.+.++.. .....++.. .....+....... +.++++.+ |+. ...+..+.+|||||||||+|||||
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~-t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD-TIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGG-SBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccch-hhhcCCCCCcCHHHHHHHHHHHHH
Confidence 3343322211 122222211 1111222221111 12233333 332 234556789999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+.+|+||||||||++||+.+...+++.|+++ ++|+|+||||++.+. .||+|++|++|+|+ ..|++++++.
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv-~~G~~~eLl~ 239 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 239 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 689999999999885 69999999999997 5689888764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-42 Score=337.96 Aligned_cols=197 Identities=27% Similarity=0.344 Sum_probs=165.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------eEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------RIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------~~~ 433 (582)
.+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.+.+.. ..+
T Consensus 2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 478999997654 589999999999999999999999999999999975 789999987641 356
Q ss_pred EechhhhhhcCCcccHHHHHHhc-CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc-------CCC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE-YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR-------QPH 505 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~-------~p~ 505 (582)
|++|... ..+..++.+++... ......+.+.++++.+++.+... +++.+|||||||||+|||||++ +|+
T Consensus 76 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ 152 (231)
T d1l7vc_ 76 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 152 (231)
T ss_dssp EECSCCC--CCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred eeecccc--CCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhC-cChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence 7766532 33455666665433 23334567889999999987664 5668999999999999999997 779
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||||||||+|||+.++..+.++|+++ +.|||+||||++++.++||||++|++|+++ ++|+++++.
T Consensus 153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~ 220 (231)
T d1l7vc_ 153 LLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 220 (231)
T ss_dssp EEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHS
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999998888764 679999999999999999999999999996 599999885
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3e-43 Score=346.08 Aligned_cols=206 Identities=23% Similarity=0.348 Sum_probs=147.1
Q ss_pred ceEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHH
Q 007982 72 DIRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~ 147 (582)
+|+++||+|+|++ +.+|+||||+|++|+++||+||||||||||+++|+|+..|+.|.+ .+++..+ .......
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I----~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI----TIDGQPIDNISLENWRS 76 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE----EETTEESTTTSCSCCTT
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEE----EECCEEeccccHHHHHh
Confidence 5899999999965 679999999999999999999999999999999999999886643 2222211 1111112
Q ss_pred Hhc--cccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-------h---hhhhccCCCCChhHHHHHHHHHH
Q 007982 148 ILG--AQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFN-------K---TMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 148 ~~~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~-------~---~~~~~~~~~LSGGqrqRv~LAra 213 (582)
.++ +|.+. ..+..+++... .........+.+.++..++. . ......+..|||||||||+||||
T Consensus 77 ~i~~v~Q~~~lf~~ti~eNi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARa 153 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAGTIRENLTYG---LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (242)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSC---TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred heEEEccccccCCcchhhheecc---cccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 232 22221 11222222111 11111111222222222211 1 12233456899999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|+.+|+||||||||++||+.+...+++.|+++ ++|+|+||||++.+. .||||++|++|+|+ ..|++++.+.
T Consensus 154 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred HhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999998876 689999999999886 59999999999997 5799988764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.6e-42 Score=340.06 Aligned_cols=209 Identities=23% Similarity=0.358 Sum_probs=153.5
Q ss_pred ceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH---HHHHHHH
Q 007982 72 DIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER---LKLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~---~~~~~~~ 146 (582)
.|+++||+|+|++ .++|+||||+|++|++++|+||||||||||+++|+|+..|+.|. +.+++.. .......
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~----I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ----ILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE----EEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccc----cccCCEEcccCCHHHhh
Confidence 5999999999965 56999999999999999999999999999999999999988554 3333321 1222333
Q ss_pred HHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCCh----------hhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 147 EILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNK----------TMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~----------~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
..+++.++........+.+.+.........+.+.++++..++.+ ......+..|||||||||+|||||+.
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 44443222111111123333321111111233445555555422 12234556899999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+|+|||||||||+||+.+...+++.|.++ ++|+|+||||++.+. .||+|++|++|+|+ ..|++++++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv-~~G~~~eLl~ 241 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIV-ETGTHRELIA 241 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999876 579999999999885 69999999999997 4689888765
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-40 Score=333.43 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=154.0
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
|.++|+++ . ++++|+||||+|++||++||+||||||||||+++|+|+++|++|.|...+ +++|++|... .+.
T Consensus 39 i~~~~~~~--~-g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~---l~~ 110 (281)
T d1r0wa_ 39 VSFSHLCL--V-GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSW---IMP 110 (281)
T ss_dssp -CHHHHHH--T-TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSCC---CCS
T ss_pred EEEEEcCC--C-CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEecccc---ccC
Confidence 44555543 3 36899999999999999999999999999999999999999999999877 4899999753 245
Q ss_pred ccHHHHHHhcCCCChHHHHHHHHHhcCCC-------Ccc---ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 007982 447 MSALQYMIKEYPGNEEEKMRAAIGRFGLT-------GKA---QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516 (582)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~---~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~L 516 (582)
.|+.+++..... ........+++..++. ... ......+|||||||||+|||||+++|+||||||||++|
T Consensus 111 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 111 GTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp EEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred ceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccC
Confidence 688888754322 2233344444433321 111 11224579999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 517 DIETIDSLAEA-LNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 517 D~~~~~~l~~~-l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+.+...+.+. +... +.|+|+|||+++.+ +.||||++|++|+|+ +.|+++++..
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~-~~Gt~~eL~~ 246 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSY-FYGTFSELQS 246 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEE-EECCHHHHhc
Confidence 99999998875 3433 57999999999887 679999999999996 5899999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-41 Score=327.25 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=151.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
.|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+.++. |. +.+++... ........
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~-G~----I~~~g~~i~~~~~~~~~~~ 73 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GS----IQFAGQPLEAWSATKLALH 73 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCS-SE----EEESSSBGGGSCHHHHHHH
T ss_pred EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCc-eE----EEECCEECCcCCHHHHHhh
Confidence 68999998765 699999999999999999999999999999999987643 32 22222211 11111111
Q ss_pred hcc--ccC--CCc-chHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc-------
Q 007982 149 LGA--QED--GGG-EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI------- 216 (582)
Q Consensus 149 ~~~--~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------- 216 (582)
..+ +.. ... .....+ .+.. ......+.+.++++.+++.+ ..++++.+|||||||||+|||||++
T Consensus 74 ~~~~~~~~~~~~~~~v~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p 149 (231)
T d1l7vc_ 74 RAYLSQQQTPPFATPVWHYL--TLHQ-HDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 149 (231)
T ss_dssp EEEECSCCCCCSSCBHHHHH--HHHC-SCTTCHHHHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred ceeeeccccCCccccHHHHh--hhcc-chhhHHHHHHHHHHhcCCHh-HhCcChhhcCHHHHHHHHHHHHHHhhCcccCC
Confidence 111 111 111 111111 1122 22233567888999999975 5689999999999999999999997
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ +.|++++++
T Consensus 150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~ 220 (231)
T d1l7vc_ 150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 220 (231)
T ss_dssp TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHh
Confidence 77999999999999999999999888764 789999999999999999999999999996 568887765
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.8e-40 Score=312.86 Aligned_cols=181 Identities=19% Similarity=0.287 Sum_probs=147.2
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEechhh
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQHL 439 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q~~ 439 (582)
.|+++||+|+|+ +++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+++|++|..
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence 489999999994 47999999999999999999999999999999999999999999998763 3588888875
Q ss_pred hhhcCCcccHHHHHHh---cC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 007982 440 AEKLDMDMSALQYMIK---EY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH 515 (582)
Q Consensus 440 ~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~ 515 (582)
. +....++.+++.. .+ ......++.++++.+++.+. ++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 80 ~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~g 155 (200)
T d1sgwa_ 80 I--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 155 (200)
T ss_dssp C--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred c--CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCccc--ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 3 3345566665432 22 23345667888999988653 245689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEe
Q 007982 516 LDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 516 LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
||+.++..+.+.|.++ +.+||+++||+ .+||++.+|+
T Consensus 156 LD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 156 IDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH 196 (200)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhee
Confidence 9999999988887765 23455555554 4799998874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.4e-38 Score=302.78 Aligned_cols=187 Identities=17% Similarity=0.220 Sum_probs=135.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
-|+++||++.|+ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++.... .....+++
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~----I~~~g~~i~--~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE----IIYNGVPIT--KVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEEGG--GGGGGEEE
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCE----EEECCEehh--HhcCcEEE
Confidence 489999999995 57999999999999999999999999999999999999998553 444433221 11112222
Q ss_pred ccC-----CCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 152 QED-----GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 152 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
.+. ......+.+............+..+.+.++.+++.+ .++++.+|||||||||+|||||+.+|++||||||
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEP 152 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 152 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred EeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCc
Confidence 111 111222222211111211222345677888888753 3567899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 227 TNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 227 t~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
|+|||+.++..+++.|.++ +.+||.++|++ .+||++.+|++
T Consensus 153 t~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 153 VVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp TTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 9999999999988887664 34555555554 47999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.4e-38 Score=314.04 Aligned_cols=193 Identities=21% Similarity=0.315 Sum_probs=135.2
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (582)
|+++|++ |.++++|+|+||+|++||++||+||||||||||+++|+|+..|+.|. +.+++.- . +..|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~----I~~~g~i-------~-~v~Q 104 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----IKHSGRV-------S-FCSQ 104 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE----EECCSCE-------E-EECS
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcE----EEECCEE-------E-EEec
Confidence 4445544 47789999999999999999999999999999999999999987553 3332210 0 0011
Q ss_pred cCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhC-------CCC---hhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 153 EDG--GGEQLERVYERLEALDASTAEKRAAEILYGL-------GFN---KTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 153 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l-------gl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
... .....+++.... ..+. .+...+++.. .+. ....++.+.+|||||||||+|||||+.+|+|
T Consensus 105 ~~~l~~~tv~eni~~~~-~~~~----~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 105 FSWIMPGTIKENIIFGV-SYDE----YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp SCCCCSEEHHHHHTTTS-CCCH----HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred cccccCceeeccccccc-cccc----hHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc
Confidence 110 112222221100 0111 1111222211 111 1223455678999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETL-KKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l-~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|||||||++||+.+...+++.+ ..+ ++|+|+|||+++.+ ..||||++|++|+++ +.|+++++..
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~-~~Gt~~eL~~ 246 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSY-FYGTFSELQS 246 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999988754 333 57999999999887 579999999999997 4689988764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.69 E-value=3.8e-19 Score=164.70 Aligned_cols=170 Identities=9% Similarity=0.023 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC--CcccHHHHHHhcCCCChHHHHHHHHHhc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD--MDMSALQYMIKEYPGNEEEKMRAAIGRF 472 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (582)
.++|+||||||||||++.|+|.++|..|.+...+.....+-.+....... ...... ....... ....+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~ 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIF----SSKFFTS----KKLVGSY 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEE----EETTCCC----SSEETTE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHH----hhhhhhh----hhhhhhh
Confidence 58999999999999999999999999998876432111111110000000 000000 0000000 0000112
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcC
Q 007982 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH--LDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 473 gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~--LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d 550 (582)
+... ....+|+|+++|.++++++..+|++|++|||+.. .+......+.+.++..+.++|+++|+... ..+|+
T Consensus 74 ~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~ 147 (178)
T d1ye8a1 74 GVNV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVK 147 (178)
T ss_dssp EECH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHH
T ss_pred hcCc-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhc
Confidence 2211 1236899999999999999999999999997644 35566778888888888999999999765 46899
Q ss_pred EEEEEeCCeEEEE-cCCHHHHHHHHHHHc
Q 007982 551 EIWVCENQAVTRW-EGDIMDFKLHLKAKA 578 (582)
Q Consensus 551 ~i~~l~~G~i~~~-~g~~~~~~~~~~~~~ 578 (582)
+++.+.+|+++.. ..+.+.+.+.+-+.+
T Consensus 148 ~i~~~~~~~i~~v~~~nrd~~~~~i~~~l 176 (178)
T d1ye8a1 148 EIRRLPGAVLIELTPENRDVILEDILSLL 176 (178)
T ss_dssp HHHTCTTCEEEECCTTTTTTHHHHHHHHS
T ss_pred eEEEEeCCEEEEECCccHHHHHHHHHHHH
Confidence 9999999999743 334455555555444
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.54 E-value=3.1e-17 Score=151.52 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=67.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCceeecCCCCC--CCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 197 TRDFSGGWRMRIALARALFINPTILLLDEPTNH--LDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 197 ~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~--LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
..++|+|+++|.++++++..+|++|++|||+.. .+......+.+.+++.+.++|+++|+.. ...+|+++..+.+|++
T Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~-~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD-VHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC-CSHHHHHHHTCTTCEE
T ss_pred hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHH-HHHhhceEEEEeCCEE
Confidence 346899999999999999999999999997643 4567778888888888899999999975 4568999999999998
Q ss_pred EEE
Q 007982 275 KFY 277 (582)
Q Consensus 275 ~~~ 277 (582)
+..
T Consensus 158 ~~v 160 (178)
T d1ye8a1 158 IEL 160 (178)
T ss_dssp EEC
T ss_pred EEE
Confidence 643
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=2.9e-11 Score=120.72 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=63.0
Q ss_pred cCCCCChhHHHHHHHHHH----HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEE-
Q 007982 196 KTRDFSGGWRMRIALARA----LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIH- 268 (582)
Q Consensus 196 ~~~~LSGGqrqRv~LAra----L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~- 268 (582)
....+|+|||+...++.. ....|.++++|||-+||+|.....+.++|++. +.-+|++||++.++. .+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence 457899999999877665 34567899999999999999999999999875 457999999998885 6798866
Q ss_pred -EeCC
Q 007982 269 -MQNK 272 (582)
Q Consensus 269 -l~~G 272 (582)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4455
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=3e-10 Score=113.18 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=63.3
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEE-
Q 007982 482 PMKNLSDGQRSRVVFAWLA----YRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWV- 554 (582)
Q Consensus 482 ~~~~LSgGqkqrv~lAral----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~- 554 (582)
.+..+|+|||+...++..+ ...|.++++|||-+||+|.....+.+.|++. ...||++||.+.++ ..+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~-~~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM-EAADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG-GGCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HhcccEEEE
Confidence 3568999999988776654 4678999999999999999999999999875 35799999999988 56898866
Q ss_pred -EeCC
Q 007982 555 -CENQ 558 (582)
Q Consensus 555 -l~~G 558 (582)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=4.5e-09 Score=108.73 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=62.5
Q ss_pred CCCCCCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEE
Q 007982 481 MPMKNLSDGQRSRVVFAWLA----YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIW 553 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~ 553 (582)
.++..||||||.+++||..+ ..++++++||||+++||+..+..+.+.|.+. +..+|+|||+..++ ..||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~-~~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HhcccEE
Confidence 46678999999998877544 4678899999999999999999999999765 24699999999987 5789988
Q ss_pred EE
Q 007982 554 VC 555 (582)
Q Consensus 554 ~l 555 (582)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=7.4e-09 Score=107.02 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=60.6
Q ss_pred cCCCCChhHHHHHHHHHHH----hcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEE
Q 007982 196 KTRDFSGGWRMRIALARAL----FINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIH 268 (582)
Q Consensus 196 ~~~~LSGGqrqRv~LAraL----~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~ 268 (582)
+...||||||.+++||-.+ ..+++++|||||+++||+..+..+.++|.+. +.-+|+|||+..++. .||+++.
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~ 407 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG 407 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEE
Confidence 4477899999998876544 4577899999999999999999999999765 235999999998765 6899876
Q ss_pred E
Q 007982 269 M 269 (582)
Q Consensus 269 l 269 (582)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=1.1e-05 Score=75.82 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=35.6
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHH----HHHHHhcCceEEEEecCHHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSL----AEALNEWDGGLVLVSHDFRLIN 546 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l----~~~l~~~~~tvi~vsHd~~~~~ 546 (582)
.+.+..++|+||+..|=|+.....+ .+.|.+.+..++++||..++..
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 3455569999999999999765544 4445555778999999988764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.17 E-value=2.3e-06 Score=80.80 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=34.7
Q ss_pred cCCCceeecCCCCCCCHHHHH----HHHHHHhhcCcEEEEEecCHHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACV----WLEETLKKFDRILVVISHSQDFLN 260 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~----~l~~~l~~~~~tviivsHd~~~~~ 260 (582)
.+..++|+||+..|=|+.... .+.+.|.+.+..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 445699999999999986554 445556666788999999987654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=5.4e-06 Score=78.68 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=30.3
Q ss_pred cCCCceeecCCCCCCCHHHHHHH----HHHHhh-cCcEEEEEecCHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWL----EETLKK-FDRILVVISHSQDFL 259 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l----~~~l~~-~~~tviivsHd~~~~ 259 (582)
.+..++|+||+..|=++.....+ .+.+.. .+..+|++||..+..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 34469999999999998766544 333433 345789999986544
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=8.8e-06 Score=77.19 Aligned_cols=46 Identities=24% Similarity=0.163 Sum_probs=31.9
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHH----HHh-cCceEEEEecCHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEA----LNE-WDGGLVLVSHDFRLI 545 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~-~~~tvi~vsHd~~~~ 545 (582)
.+.+..++|+||+..|=++.....+..+ +.. ....+|++||..+..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 3455569999999999999776655433 322 234688888876654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=3.4e-06 Score=76.69 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=28.8
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.+.+|++.+| +++|+|||||||||||.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 467788888776 999999999999999999963
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=6.5e-06 Score=74.72 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=28.8
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+++.+|.+.+| ++.|+|||||||||+|.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 367788888776 8999999999999999998643
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00013 Score=64.06 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+++|+|++|||||||++-|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00014 Score=63.96 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+|++|||||||++.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999963
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.02 E-value=0.00014 Score=65.45 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
|.++.|+||||||||||++.|..-
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.97 E-value=0.00012 Score=65.96 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
|.++.|+||+|||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 789999999999999999999876643
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.00023 Score=66.32 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=26.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~ 425 (582)
+|..++++|++|+|||||++.|.|-..-..|.|+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4889999999999999999999998777777775
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.90 E-value=0.00021 Score=63.08 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.|.++.|+||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998865
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.88 E-value=0.0002 Score=63.27 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.|.++.|.||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00025 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.82 E-value=0.00025 Score=62.56 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+|-++.|+|++||||||+.+.|+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999999997
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00012 Score=64.96 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
.+.|+||+|+|||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999999887665544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.69 E-value=0.00018 Score=63.54 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPL 420 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~ 420 (582)
+++|+|++|||||||++-|...+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 78999999999999999888776643
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00036 Score=61.69 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.|+||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999743
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.011 Score=55.79 Aligned_cols=24 Identities=42% Similarity=0.464 Sum_probs=20.9
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
-+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 369999999999999999986654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.66 E-value=0.0064 Score=57.69 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=25.4
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
|+++..=+.+|+++.|.|++|+|||||+.-|+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 33333236799999999999999999987775
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.63 E-value=0.00047 Score=60.78 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+++|+|++|||||||++.|..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3789999999999999987753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.62 E-value=0.00041 Score=61.39 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
..++|+||.|||||||.+.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999843
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.017 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
-+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 369999999999999999997765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.60 E-value=0.00041 Score=61.12 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.5
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+|-+|.|+|++||||||+.+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.60 E-value=0.00044 Score=61.17 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..|+|+||.|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.59 E-value=0.00055 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
++|-.++|.||+||||||+.+.|+.-
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999853
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.58 E-value=0.00023 Score=66.54 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=22.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~ 425 (582)
.|..++++|++|+|||||++.|.|-..-..|.|+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788899999999999999999998777777775
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.00052 Score=63.86 Aligned_cols=24 Identities=46% Similarity=0.692 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+|..++++|+||+|||||+|.|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCCHHHHHHhhcc
Confidence 588999999999999999999964
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00045 Score=60.67 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.4
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00053 Score=59.22 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.|+||+||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00061 Score=62.67 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+|.++.|+||+|||||||.+.|...
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999988643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.49 E-value=0.00068 Score=59.58 Aligned_cols=26 Identities=19% Similarity=0.551 Sum_probs=23.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|-.+.|.||+||||||+.+.|+--+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998755
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.00063 Score=58.69 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.43 E-value=0.0008 Score=59.02 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
..++.|.|++||||||+.+.|+...+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999986554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.40 E-value=0.005 Score=57.99 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.|.||.|||||||.++|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 689999999999999999854
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00069 Score=60.73 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+|||.||.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.38 E-value=0.0069 Score=56.06 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=23.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|.++.|.|++|||||||+.-++
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6799999999999999999987775
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.0005 Score=61.72 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+|-++.|+|++||||||+.+.|+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999999973
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.37 E-value=0.0009 Score=58.65 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998774
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.37 E-value=0.00078 Score=57.93 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=18.7
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 007982 99 RRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++.|.|++|||||||.+.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999774
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00099 Score=61.19 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.|.++.|+||+|||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999887554
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.30 E-value=0.00093 Score=57.42 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~G 415 (582)
.++.|.|++|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999997743
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.30 E-value=0.001 Score=58.84 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPLD 421 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~~ 421 (582)
.+++|.|+.||||||+++.|+-.+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999976654433
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.29 E-value=0.00087 Score=58.62 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+||.||||||+.+.|+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999999999974
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.27 E-value=0.00094 Score=58.22 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+||.||||||+.+.|+..+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999998765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.27 E-value=0.0018 Score=61.69 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=27.1
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
-|+++...+.+|+++.|.|++|+|||||+.-|+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 355554558999999999999999999987775
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.27 E-value=0.00088 Score=58.57 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+.|+||.||||||+.+.|+--
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.27 E-value=0.00098 Score=58.10 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++.|.||.||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.00088 Score=60.01 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++||-|++|||||||.+.|..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.26 E-value=0.0011 Score=58.63 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+++|.|+.||||||+.+.|+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.10 E-value=0.005 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=15.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..+++++||+|+||||.+--|+-.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999776666444
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.06 E-value=0.0012 Score=59.44 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999853
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.06 E-value=0.00061 Score=63.60 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+|..++++|+||+|||||+|.|.+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~ 119 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISP 119 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred ccceEEEECCCCccHHHHHHhhcc
Confidence 478999999999999999999963
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.00082 Score=60.20 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|-+|.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999997644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0015 Score=58.84 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.|+||+|||||||++.|..-
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0014 Score=58.90 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.|+||+|||||||++.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.93 E-value=0.04 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+.+++++||+|+||||.+--|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999998766665443
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0017 Score=59.39 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++||.|+.|||||||.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999886654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.89 E-value=0.0018 Score=56.74 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.|+|+.||||||+.+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.89 E-value=0.0018 Score=60.17 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0023 Score=57.25 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
...+.|+||+|+|||||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999887543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.0019 Score=58.35 Aligned_cols=19 Identities=47% Similarity=0.520 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007982 101 YGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~ 119 (582)
+.|+||+|||||||++.|.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~ 21 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLF 21 (190)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.0017 Score=58.54 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|+.|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.81 E-value=0.0017 Score=57.28 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.0019 Score=58.24 Aligned_cols=21 Identities=62% Similarity=0.896 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl 416 (582)
+.|+||+|||||||++.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.80 E-value=0.002 Score=59.78 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|+|+.|||||||++.|.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll 21 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFG 21 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 68999999999999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0024 Score=57.11 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+.|+||+|+|||||++.|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998863
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.80 E-value=0.002 Score=56.81 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.|+|++||||||+.+.|+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999974
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0021 Score=58.75 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++||-|++|||||||.+.|..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.75 E-value=0.0026 Score=57.00 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.4
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
++|-++.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.75 E-value=0.0021 Score=57.79 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-++.|+||.||||||+.+.|+--+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998644
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.74 E-value=0.0026 Score=57.00 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++|-++.|+||.||||||+.+.|+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999983
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.72 E-value=0.0017 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|||++|||||||++.|.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.0025 Score=56.00 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.71 E-value=0.0023 Score=56.04 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0021 Score=55.20 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999984
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0025 Score=54.67 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|||++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.68 E-value=0.0023 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+++|+||.||||||+.+.|+.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0036 Score=56.22 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=23.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
|++|+++.|.||+|||||||+.-++
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la 44 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLA 44 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHH
Confidence 6799999999999999999988775
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.60 E-value=0.002 Score=57.37 Aligned_cols=20 Identities=45% Similarity=0.787 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 007982 101 YGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~ 120 (582)
+||+|+.++|||||++.|.+
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999974
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.60 E-value=0.0027 Score=55.65 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.|+|+.||||||+.+.|+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999843
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.60 E-value=0.0024 Score=56.62 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.|+|+|+.|+|||||++.|+|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999963
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.59 E-value=0.0028 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++.|+||.||||||+.+.|+--+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.014 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+++++||+|+||||.+--|+-.+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999997766665443
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.56 E-value=0.003 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|+|+.|||||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.56 E-value=0.0026 Score=55.02 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|+.|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999775
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.54 E-value=0.0029 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.|+|+.||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999997543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.003 Score=56.83 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
-.+++|+||.||||||+.+.|+.-
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999853
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.54 E-value=0.003 Score=54.55 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|||+.|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.0033 Score=55.18 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|+.|+|||||++.|.|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.52 E-value=0.0025 Score=56.51 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|+.|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0029 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
|=.++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368999999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.51 E-value=0.002 Score=57.49 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-|||+|+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998743
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.0033 Score=55.88 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+||+|+.|+|||||++.|+|--
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.49 E-value=0.0032 Score=55.65 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999996544
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.47 E-value=0.0026 Score=57.04 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|+||.||||||+.+.|+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999973
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.47 E-value=0.0034 Score=55.52 Aligned_cols=23 Identities=48% Similarity=0.548 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.47 E-value=0.0031 Score=56.55 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
++||+|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.46 E-value=0.0027 Score=56.89 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.45 E-value=0.003 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
++.|+|+.|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.45 E-value=0.0032 Score=55.63 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999987663
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0035 Score=55.18 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.0035 Score=55.39 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|+||.||||||+.+.|+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.44 E-value=0.0032 Score=57.68 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
++.+++++||+|+||||.+-=|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999866555
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.42 E-value=0.0037 Score=55.54 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+||+|..|+|||||++.|.+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.42 E-value=0.0025 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+.++.|+||.||||||+.+.|+.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.41 E-value=0.0032 Score=55.66 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
++.|.|++||||||+.+.|+....
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999986543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0036 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.39 E-value=0.005 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.718 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.++|+|+.|||||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 578999999999999999998643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.39 E-value=0.0026 Score=56.42 Aligned_cols=22 Identities=55% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
|||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0038 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|..|+|||||+|.|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999863
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.37 E-value=0.0035 Score=54.85 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.|+|+.||||||+.++|+-.+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.0032 Score=56.89 Aligned_cols=22 Identities=41% Similarity=0.836 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|+.|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.33 E-value=0.0043 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+.-.++.++|+.||||||+.+-+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999875
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0041 Score=55.72 Aligned_cols=21 Identities=38% Similarity=0.316 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+||.||||||..+.|+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.0042 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|..|+|||||++.|.+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.004 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|+.|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.27 E-value=0.0043 Score=55.98 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.++|..|||||||.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.26 E-value=0.0041 Score=56.89 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|-||.||||||+.++|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.26 E-value=0.0035 Score=56.45 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.0
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+..+.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457789999999999999999997644
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0042 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
|=.++|+|+.|+|||||++.|.+..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368999999999999999998653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.20 E-value=0.067 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
..+++|+|.-|.|||||.+.+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.20 E-value=0.0031 Score=55.89 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+||+|..|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.17 E-value=0.0048 Score=54.78 Aligned_cols=21 Identities=43% Similarity=0.533 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|+||.||||||+.+.|+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.17 E-value=0.12 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~G 415 (582)
.+++|+|.-|.|||||++.+.-
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0047 Score=56.26 Aligned_cols=23 Identities=48% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|+|.||.||||||+.+.|+--+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999997544
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.17 E-value=0.0042 Score=55.62 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++||.|+.||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.16 E-value=0.0048 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.006 Score=54.63 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
|.+|+++.|.||+|||||||+--++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999877654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.13 E-value=0.0035 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|+|-|+-||||||+++.|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.12 E-value=0.0057 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.302 Sum_probs=21.3
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+.-+.+.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.08 E-value=0.0071 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++|+|+.|||||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48899999999999999997643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.03 E-value=0.0054 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.97 E-value=0.0052 Score=57.74 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
..+.|.||.|||||||.+.|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998644
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.95 E-value=0.0058 Score=53.49 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
+++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999884
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.95 E-value=0.0055 Score=60.05 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.4
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD 421 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~ 421 (582)
+..+.-+.|.|+.|||||||++.|.+.++|..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 44556689999999999999999999987754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.93 E-value=0.0062 Score=55.74 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
++|-++.|.|.+|||||||.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999999986
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0057 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
++.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0035 Score=55.29 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.|+|+|+.++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.91 E-value=0.0065 Score=53.80 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.|+||.||||||+.+.|+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.0034 Score=55.29 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|+.++|||||+|.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.87 E-value=0.0062 Score=55.40 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
++||+|+.||||||+++.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.0066 Score=53.74 Aligned_cols=23 Identities=48% Similarity=0.699 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997544
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.86 E-value=0.005 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
=+++|-|+.||||||+++.|....
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998544
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.006 Score=53.93 Aligned_cols=21 Identities=43% Similarity=0.333 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|+||.||||||..+.|+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.80 E-value=0.0041 Score=61.03 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDM 126 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~ 126 (582)
.|.-+.|.|+.||||||||++|....+++.
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred hCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 345589999999999999999998887753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.79 E-value=0.0048 Score=58.01 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.75 E-value=0.0067 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0073 Score=54.88 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|.||.||||||+.+.|+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999973
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.008 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|+||.||||||+.+.|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999984
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.68 E-value=0.0078 Score=54.04 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
=++.|+||.||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999998644
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.65 E-value=0.0078 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|-||.||||||+.+.|+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578889999999999999983
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.65 E-value=0.0076 Score=54.75 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++||.|+.||||||+.+++..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0083 Score=54.83 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.1
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
++|-+|+|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999877553
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.62 E-value=0.0076 Score=55.56 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHH-HhhcCeEEE
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFL-NGVCTNIIH 268 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~-~~~~d~i~~ 268 (582)
++.++|+||- ..+-......|...+.... ..+|++++..+.+ ..+.+|..+
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~ 162 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 162 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcccc
Confidence 5679999994 3445566667777776653 3567777775543 344455433
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.62 E-value=0.0075 Score=57.03 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++|+|..|+|||||++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.61 E-value=0.0084 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~ 120 (582)
=++.|+||.||||||+.+.|+.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.0085 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+||-||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998644
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.0085 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+|.+++|-|+-||||||+++.|..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999974
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.0051 Score=56.39 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.0
Q ss_pred cEEEEECCCCCcHHHHHHHHh
Q 007982 99 RRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+++++||+|+||||.+-=|+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999876665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.0092 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|.+|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.0096 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+.|.||+|+||||++++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.50 E-value=0.0032 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|+.|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.50 E-value=0.0028 Score=54.78 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++|+|+.|+|||||++.|+|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.50 E-value=0.0079 Score=56.87 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
++|+|..|+|||||+|.|.|-
T Consensus 35 I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 899999999999999999864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.49 E-value=0.0091 Score=51.83 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998863
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.46 E-value=0.0086 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.1
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
..|-++-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.40 E-value=0.0064 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.-+++++||||+||||.+--|+-.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33488999999999999766555433
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.0087 Score=58.68 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-++||+||.|||||||+..|...+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998544
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.38 E-value=0.0086 Score=52.01 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999997754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.0068 Score=55.95 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++.+++|-|+-||||||+++.|+...
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.01 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.31 E-value=0.0092 Score=54.50 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
..++.++||||+||||.+--|+-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999998777765543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.0094 Score=57.83 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999987764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.30 E-value=0.0082 Score=54.29 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
-|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.29 E-value=0.0097 Score=54.75 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 007982 101 YGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~ 120 (582)
+.|.||+|+|||||+++|+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 78999999999999999974
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.01 Score=53.99 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.0093 Score=52.21 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 478999999999999998765
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.27 E-value=0.0098 Score=54.76 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.|.||+|+||||++++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.25 E-value=0.0076 Score=55.21 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=14.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
..++++|||+|+||||.+-=|+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SEEEEEECSCCC----HHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999866555
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.0063 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+.+|+|-|+-||||||++++|...+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.24 E-value=0.011 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
...++.++||||+||||.+-=|+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA 31 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLA 31 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35688999999999999877776
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.23 E-value=0.012 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|.++.|.||.|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 6799999999999999999987764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.21 E-value=0.01 Score=51.87 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999774
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.0097 Score=58.33 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.-++||.||.|||||||++.|+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 45799999999999999999873
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.01 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.|.||.|+|||||.++|+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999843
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.01 Score=53.59 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|+.|+|||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.17 E-value=0.011 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+||+|.-.||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.012 Score=53.65 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++||+|..||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.023 Score=49.36 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-----CCCCCCcE
Q 007982 395 RVALVGPNGAGKSTLLKLMTG-----DLVPLDGM 423 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G-----l~~p~~G~ 423 (582)
.++|+|+.|+|||||++-+.+ .+.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 478999999999999987765 23455553
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.013 Score=53.68 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
+|-+|+|-|+-||||||++++|.-.+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6899999999999999999999876653 3443
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.013 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|||+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998863
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.012 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.|.||+|+||||++++|+..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.013 Score=53.73 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+|.+++|-|+-||||||+.+.|+...
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999997543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.03 E-value=0.0073 Score=57.92 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
-++||.|++||||||+.+.|.-.+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3899999999999999998877654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.011 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++||-|++|||||||.+.|..+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHH
Confidence 78999999999999999997554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.98 E-value=0.014 Score=50.93 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 007982 101 YGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~ 120 (582)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.97 E-value=0.0096 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=18.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+.-++++|||+|+||||.+-=|+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999866555
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.96 E-value=0.012 Score=51.44 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 007982 396 VALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~G 415 (582)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999997754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.92 E-value=0.014 Score=50.78 Aligned_cols=29 Identities=34% Similarity=0.324 Sum_probs=25.4
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.++|.+++|.|+=|||||||.|.++.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999876554
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.012 Score=51.63 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.013 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.016 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.84 E-value=0.014 Score=56.71 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.-+.|+||.|||||+|.|+|+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 345679999999999999999864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.016 Score=50.26 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|+|+.|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 37899999999999998765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.80 E-value=0.013 Score=51.27 Aligned_cols=21 Identities=48% Similarity=0.738 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.015 Score=50.95 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+++||+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.017 Score=52.86 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.+|+++-|.||.|||||||+--++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999999977653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.78 E-value=0.015 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.++.|.||.|+|||||++.++
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHH
Confidence 35679999999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.014 Score=50.73 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|||+.|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.75 E-value=0.017 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=23.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
..++|.+++|-|+=|||||||.|.++
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~ 54 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHH
Confidence 34689999999999999999999996
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.72 E-value=0.014 Score=51.63 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
++|||.-.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.017 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999988763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.59 E-value=0.0092 Score=57.21 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++||.|++||||||+.+.|..+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999987544
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.015 Score=53.56 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDLVPL 420 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~~p~ 420 (582)
+-+.||.|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6799999999999999998766543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.019 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
..-+.|.||.|||||+|.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 345789999999999999999843
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.54 E-value=0.02 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAI 118 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l 118 (582)
|++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 779999999999999999997543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.015 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++++|++|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999977653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.51 E-value=0.016 Score=50.22 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 007982 395 RVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~ 414 (582)
.++|+|+.|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 37899999999999998655
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.47 E-value=0.019 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=23.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|+++.|.|++|+|||||+--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7799999999999999999988775
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.45 E-value=0.02 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|+++.|.||.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 6799999999999999999977553
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.44 E-value=0.017 Score=49.99 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++++|.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.02 Score=49.77 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++|+|+.|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.019 Score=50.17 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+++||+.|+|||||++.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 37899999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.42 E-value=0.019 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+.++.|.||.|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999987643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.016 Score=50.58 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-----CCCCCCcEE
Q 007982 395 RVALVGPNGAGKSTLLKLMTG-----DLVPLDGMV 424 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G-----l~~p~~G~i 424 (582)
.++|+|..|+|||||++-+.+ .+.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 589999999999999987654 234555543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.41 E-value=0.019 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.021 Score=50.50 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 007982 101 YGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~ 120 (582)
++|+|+.|+|||||++.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.016 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.019 Score=52.95 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=22.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
|++|.++.|.|++|||||||.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 6799999999999999999987765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.018 Score=53.09 Aligned_cols=21 Identities=38% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.|.||.|+|||||.++|+..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999853
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.34 E-value=0.021 Score=49.60 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|||..|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48899999999999999986
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.017 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|+.|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999976643
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.022 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998763
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.31 E-value=0.014 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.018 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.019 Score=49.98 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|||..|+|||||++-+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~ 26 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFI 26 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.26 E-value=0.023 Score=57.18 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCCC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
++|+|..|+|||||+|.|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999987543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.26 E-value=0.022 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.22 E-value=0.048 Score=48.11 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.2
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+...-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 344444444 57789999999999999987764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.22 E-value=0.024 Score=56.97 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
|||+|..|+|||||++.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999954
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.015 Score=55.54 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.0
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
=+.|.+|++.+|+|+.|+|||||+..|+.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 35788999999999999999999998863
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.02 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|+.|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.17 E-value=0.022 Score=51.12 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.02 Score=52.29 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFL 259 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~ 259 (582)
+.+++|+||.- ++.......|...+.... ..+++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 35799999955 566667777777776653 4677888876554
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.025 Score=53.31 Aligned_cols=25 Identities=40% Similarity=0.711 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..-+.|.||.|||||+|++.|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457899999999999999999765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.031 Score=48.81 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+.|+|+.|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987643
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.13 E-value=0.026 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.3
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+.+|+.+.|.|++|||||||+.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999876654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.12 E-value=0.026 Score=51.24 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=35.5
Q ss_pred cCCCEEEEeCCCCCCCH----HH----HHHHHHHHHhcCceEEEEecCHH---------HHHhhcCEEEEEe
Q 007982 502 RQPHMLLLDEPTNHLDI----ET----IDSLAEALNEWDGGLVLVSHDFR---------LINQVAHEIWVCE 556 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~----~~----~~~l~~~l~~~~~tvi~vsHd~~---------~~~~~~d~i~~l~ 556 (582)
.+|+++++|=-+.-.+. .. ...+...+++.+.++++++|... ....++|-++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 47999999976655432 11 12334445556788888887442 4556788888775
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.025 Score=49.21 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 37899999999999999987643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.024 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|||+.|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.09 E-value=0.02 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987664
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.07 E-value=0.021 Score=53.40 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-+.|.||.|||||+|.++|+.
T Consensus 42 ~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 478999999999999999984
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.021 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999988865
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.019 Score=49.53 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.02 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.01 E-value=0.025 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.01 E-value=0.016 Score=51.02 Aligned_cols=20 Identities=45% Similarity=0.770 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|+|+.|+|||||++.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999985
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.022 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.025 Score=49.39 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007982 101 YGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~ 119 (582)
++|+|+.|+|||||++-+.
T Consensus 9 I~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998775
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.022 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|||..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.97 E-value=0.023 Score=55.04 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.-+.++||.|||||+|.|.|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345699999999999999999865
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.97 E-value=0.045 Score=48.33 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=25.3
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+....+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 355555566 67889999999999999987764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.96 E-value=0.023 Score=55.39 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl 416 (582)
-++||+||-|||||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.95 E-value=0.022 Score=52.20 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHH-hCCCCCCCcE
Q 007982 395 RVALVGPNGAGKSTLLKLM-TGDLVPLDGM 423 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll-~Gl~~p~~G~ 423 (582)
.+.|+|++|+|||||++-+ .+-..|+-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence 5789999999999999876 5666788884
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.036 Score=48.07 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.91 E-value=0.021 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl 416 (582)
-++||+|...||||||++.|.+.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCccHHHHHHHHHhh
Confidence 36999999999999999999874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.026 Score=48.89 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|..|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.028 Score=48.47 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 007982 101 YGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~ 120 (582)
++|||..|+|||||++-+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.88 E-value=0.02 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+-+.||.|+||||+++++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.024 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.|+|.+|+|||||++.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998863
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.84 E-value=0.025 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.023 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987664
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.027 Score=48.77 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999988763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.034 Score=48.50 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999987543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.021 Score=52.86 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=31.9
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDF 258 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~ 258 (582)
+..++|+||.-. |.......+...+.+.. ..+|++|++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 456999999854 88888888888888764 357889988653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.74 E-value=0.027 Score=54.94 Aligned_cols=23 Identities=43% Similarity=0.752 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.-++||.||-|+|||||+..|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.023 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.|+|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.029 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999976543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.69 E-value=0.025 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.026 Score=51.90 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=23.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.|.+|.++.|.||+|||||||.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999999988775
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.029 Score=53.64 Aligned_cols=20 Identities=30% Similarity=0.137 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
++||-|+.|||||||.+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999998774
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.027 Score=51.38 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhcC-c-EEEEEecCHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKFD-R-ILVVISHSQDF 258 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~~-~-tviivsHd~~~ 258 (582)
.+++|+||. ..+.......|...|.+.. . .+++++++...
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 469999996 4678888888999888763 3 46667766444
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.026 Score=49.48 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++++|+.|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.55 E-value=0.027 Score=51.38 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH-HhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLI-NQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~-~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
...++|+||.- ++.......+...+.... ..+++++++.+-+ ..+-.|..++.= -.-+.+++.+.+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~-----~~~~~~~i~~~l~ 170 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY-----SKLSDEDVLKRLL 170 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC-----CCCCHHHHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhh-----cccchhhhHHHHH
Confidence 35799999954 566667777777777753 4577788876553 223333333321 1334555555543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.53 E-value=0.03 Score=51.11 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+.+|+++-|.|+.|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999877753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.52 E-value=0.022 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999976443
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.51 E-value=0.03 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.9
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLM 413 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll 413 (582)
+++|+++.|.||.|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 889999999999999999997644
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.46 E-value=0.034 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
...+.|.||.|+||||+++.|+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999986543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.46 E-value=0.03 Score=51.49 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 699999999999999999964
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.024 Score=52.43 Aligned_cols=41 Identities=12% Similarity=0.345 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEWDG--GLVLVSHDFRL 544 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~ 544 (582)
...++|+||.-. |.......+.+.+..... .+|++|++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 456999999854 888888889999988753 47889988753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.39 E-value=0.028 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999996554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.034 Score=48.66 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.33 E-value=0.023 Score=49.59 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.|+|++|+|||||++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.034 Score=48.21 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|||..|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999999775
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.29 E-value=0.026 Score=49.73 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
.+.|+|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 478999999999999999877777888854
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.032 Score=48.68 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|||..|+|||||++-+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~ 27 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFI 27 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48899999999999999875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.029 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.028 Score=50.16 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 007982 396 VALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~G 415 (582)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999997764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.031 Score=49.81 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007982 101 YGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~ 119 (582)
++|+|+.|+|||||++.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHh
Confidence 8899999999999999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.037 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|||+.|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998864
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.029 Score=48.94 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 007982 396 VALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~G 415 (582)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.036 Score=48.13 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+++||..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999886
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.037 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|||..|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988763
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.19 E-value=0.032 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl 416 (582)
+.|.||.|||||+|++.|+..
T Consensus 43 vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhc
Confidence 579999999999999999864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.17 E-value=0.032 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
...-+.|.||.|+|||+|.++|+...
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34458899999999999999998644
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.032 Score=48.59 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007982 101 YGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~ 119 (582)
++|+|..|+|||||++.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 8999999999999999875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.15 E-value=0.036 Score=49.15 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|..|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999984
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.024 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997755
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.02 E-value=0.042 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
..+.|.||.|+||||+++.|+..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999987754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.038 Score=52.74 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.1
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
=+.|..|++.+|+|+.|+|||||+..|+.-.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999999887643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.033 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999977654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.99 E-value=0.038 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
++||+|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999954
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.89 E-value=0.036 Score=50.50 Aligned_cols=40 Identities=10% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcC-c-eEEEEecCHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEWD-G-GLVLVSHDFRL 544 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vsHd~~~ 544 (582)
.+++|+||. ..+.......+...|.+.. . -++++|++...
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 469999996 4677888888999998864 3 36667766444
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.028 Score=48.97 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|+.|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.042 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999988873
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.78 E-value=0.039 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+.|.||.|||||+|.++++..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 889999999999999999864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.77 E-value=0.045 Score=47.50 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|..|+|||||++.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~ 25 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFF 25 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999876
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.73 E-value=0.038 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.++|+.|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.73 E-value=0.083 Score=46.48 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 344444444 46778999999999999886654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.73 E-value=0.042 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999874
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.68 E-value=0.078 Score=46.70 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=24.5
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455555555 57788999999999999986664
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.029 Score=48.90 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999986654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.56 E-value=0.03 Score=52.92 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+....-+-|.||.|+|||+|++.|++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3444558899999999999999999876
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.049 Score=47.04 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|||..|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999876
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.52 E-value=0.049 Score=47.20 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|..|+|||||++.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999999999875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.048 Score=47.27 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|+|+.|+|||||++.+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 38999999999999999764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.044 Score=48.34 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|+|..|+|||||++.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.042 Score=47.64 Aligned_cols=22 Identities=45% Similarity=0.744 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHH-hCC
Q 007982 395 RVALVGPNGAGKSTLLKLM-TGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll-~Gl 416 (582)
.++|+|+.|+|||||++-+ .|-
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~ 30 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGA 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 3899999999999999965 443
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.44 E-value=0.047 Score=48.32 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC--CCCCCCcE
Q 007982 395 RVALVGPNGAGKSTLLKLMTG--DLVPLDGM 423 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G--l~~p~~G~ 423 (582)
.+.|+|..|+|||||++-+.- ...||-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence 478999999999999998832 23588883
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.05 Score=46.97 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999997754
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.37 E-value=0.046 Score=48.06 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|..|+|||||++-+.
T Consensus 4 KivliG~~~vGKTsli~r~~ 23 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFA 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999998775
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.043 Score=52.17 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999965
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.32 E-value=0.044 Score=47.53 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-----CCCCCCcE
Q 007982 395 RVALVGPNGAGKSTLLKLMTG-----DLVPLDGM 423 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G-----l~~p~~G~ 423 (582)
.+.|+|+.|+|||||++.+.+ .+.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 588999999999999998653 23455554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.31 E-value=0.046 Score=51.02 Aligned_cols=22 Identities=45% Similarity=0.836 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.+.||.|+|||+|++.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.049 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999977653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.045 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
.++++|+.|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999996655
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.27 E-value=0.034 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|.||.|+||||+++.++.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 466779999999999999974
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.053 Score=47.58 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.24 E-value=0.034 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987753
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.07 E-value=0.054 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999953
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.80 E-value=0.039 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.=+.++||.|||||-|.+.|++++.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467999999999999999999774
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.78 E-value=0.058 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-hCC
Q 007982 395 RVALVGPNGAGKSTLLKLM-TGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll-~Gl 416 (582)
.+.|+|..|+|||||++-+ .|-
T Consensus 4 KivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 4789999999999999755 443
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.64 E-value=0.08 Score=49.82 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
=|+.|.++-|.||+|||||||+-.++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHH
Confidence 46689999999999999999976664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.58 E-value=0.03 Score=54.56 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
-+-|+||-|+|||||+|.|+++++|
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 5789999999999999999999865
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.058 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.++|+|+.|+|||||++.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48899999999999998875
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.53 E-value=0.072 Score=47.38 Aligned_cols=22 Identities=41% Similarity=0.595 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.47 E-value=0.064 Score=53.75 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecC
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHS 255 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd 255 (582)
--+|..+|=++|++|++.|.. |+++.....+.-. .|..|+-+-|-
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~-tGhlV~tTlHa 261 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASL-TGHLVMSTLHT 261 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHHh-cCCeEEEEecc
Confidence 445777888999999999998 7777776665433 36677777665
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.41 E-value=0.058 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+-|.||.|+|||+|++.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6799999999999999999854
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.056 Score=47.85 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 007982 395 RVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~ 414 (582)
.++|+|+.|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48899999999999987654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.37 E-value=0.092 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.|||..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999998853
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.066 Score=49.08 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+++|-|+=||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 378999999999999999998655
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.31 E-value=0.045 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45677999999999999998765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.11 E-value=0.038 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
.-+.|+|+-|+|||||++.++.+.|+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35799999999999999999987764
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.91 E-value=0.073 Score=50.32 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.6
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 91 SELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 91 vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
.=+.+-+|++.+|+|+.|+|||||+..|+
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 34688899999999999999999987775
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.89 E-value=0.11 Score=45.33 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.1
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+...-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGVLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 44433433 67889999999999999986653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.065 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhcC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
-+++|+||-++||||||+.|.+.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHcCC
Confidence 37999999999999999999753
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.76 E-value=0.082 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+.++||+|+|||.|.+.|+...
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 47899999999999999998654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.71 E-value=0.074 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.-+.+|||+|||||-|.+.|+.+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998644
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.54 E-value=0.078 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+++|=|+-||||||+++.|..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.36 E-value=0.063 Score=53.82 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=22.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+.-.+.|.||.||||||++..+...+.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 345789999999999999999988653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=0.12 Score=48.56 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.|..|.++-|.||+|||||||+-.++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999976665543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.91 E-value=0.091 Score=50.59 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEe--CCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 007982 485 NLSDGQRSRVVFAWLAYRQPHMLLLD--EPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLI 545 (582)
Q Consensus 485 ~LSgGqkqrv~lAral~~~p~lLlLD--EPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 545 (582)
.++.-+..++.-..-+...|-++++= |.. ..+....+.+.....+..|+.++...+..
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 56777888877777777788777743 221 23444444444455566788787776654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.85 E-value=0.087 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+||||..-+|||||+++|++.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.71 E-value=0.1 Score=47.34 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007982 101 YGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~ 119 (582)
+.|.||.|||||-|+++++
T Consensus 39 l~l~G~~G~GKTHLl~A~~ 57 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAG 57 (213)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6799999999999999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.70 E-value=0.095 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+||||..-||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999864
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.64 E-value=0.086 Score=48.17 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988763
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.62 E-value=0.099 Score=45.86 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
.+.|+|..|+|||||++-+.
T Consensus 4 Kiv~lG~~~vGKTsll~r~~ 23 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMR 23 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999985
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.41 E-value=0.11 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+++||.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.24 E-value=0.14 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.602 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-CC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV-PL 420 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~-p~ 420 (582)
.++++|.-.||||||++.|.|.-- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 579999999999999999999753 54
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.19 E-value=0.17 Score=44.11 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=21.6
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHH
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLM 413 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll 413 (582)
++..-+.+ .|.-+.|.|++|+|||||.-.+
T Consensus 6 ~H~~~v~~-~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 6 LHGVLVDV-YGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHH
Confidence 44433333 5778999999999999987444
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.14 E-value=0.11 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 36899999999999999999865
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.08 E-value=0.14 Score=48.55 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++++|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999975
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.06 E-value=0.11 Score=51.12 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=25.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++++..+.+.||.|+|||||.+.|+...
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999998544
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.05 E-value=0.14 Score=48.11 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
=|+.|.++-|.||+|||||||.-.++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~ 78 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIV 78 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHH
Confidence 35689999999999999999987775
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.02 E-value=0.12 Score=45.21 Aligned_cols=28 Identities=39% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC---CCCCCc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD---LVPLDG 422 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl---~~p~~G 422 (582)
.+.|+|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 4789999999999999988542 346666
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.98 E-value=0.13 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
-++.|.++-|.||+|||||||+-.++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHH
Confidence 35689999999999999999965443
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.97 E-value=0.15 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+|++|.-.+|||||++.|.+..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999998644
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.88 E-value=0.13 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+=.+||||..-||||||++.|++.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3469999999999999999999763
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.85 E-value=0.12 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++++|.-.||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999865
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.39 E-value=0.15 Score=48.12 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+||||-.-+|||||+++|++..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.28 E-value=0.14 Score=46.98 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHH-HhhcCeEEEE
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFL-NGVCTNIIHM 269 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~-~~~~d~i~~l 269 (582)
.+++|+||.=. |...+...|...|.+. ...+|++|++.+-+ ..+-+|..++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i 169 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 169 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhccc
Confidence 45999999864 8899999999999875 34788888886554 3333444333
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.21 E-value=0.13 Score=48.35 Aligned_cols=19 Identities=53% Similarity=0.793 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 007982 395 RVALVGPNGAGKSTLLKLM 413 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll 413 (582)
-+||+|+.|+|||||+..|
T Consensus 4 Nv~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHH
Confidence 3799999999999999988
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.14 E-value=0.19 Score=47.39 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.6
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.=+.+-.|++++|+|+.|+|||||+.-|+-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 346789999999999999999999777753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.09 E-value=0.11 Score=49.06 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.7
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+..|.++-|.||+|||||||+-.++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 4788999999999999999997555543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.08 E-value=0.15 Score=45.78 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=36.1
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHH-HhhcCeEEEE
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFL-NGVCTNIIHM 269 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~-~~~~d~i~~l 269 (582)
+.+|+|+||. -.|...+...|+..|.+. +..+|++|++.+-+ ..+-.|...+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 3679999975 356688889999999886 33568889987643 3344554433
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.00 E-value=0.18 Score=45.12 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.84 E-value=0.13 Score=48.34 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
-++|+|..|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999984
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.70 E-value=0.14 Score=50.44 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=25.6
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
++.+..+.+.||.|+||||+.+.|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45677899999999999999999998764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.16 Score=46.64 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=43.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHH-HhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLI-NQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~-~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
.+++|+||.=. |...+...|...+.+.. ..+|++|++.+-+ ..+-.|..++. ...-+..++++.+.+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~-----~~~~~~~~i~~~l~~ 185 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH-----LKALDVEQIRHQLEH 185 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE-----CCCCCHHHHHHHHHH
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccc-----cccCcHHHhhhHHHH
Confidence 35999999854 88899999999998863 4588898886654 23334433332 123345555554443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.51 E-value=0.2 Score=47.00 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=55.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.|+.|.++-|.||+|||||||+-.++....-..|. +.|+.-... + +. +.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~--------v~yiDtE~~----------------~---~~----~~ 101 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGT--------CAFIDAEHA----------------L---DP----VY 101 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------EEEEESSCC----------------C---CH----HH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCE--------EEEEECCcc----------------C---CH----HH
Confidence 37899999999999999999998777654322232 233322100 0 11 24
Q ss_pred HHhcCCCCccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCC
Q 007982 469 IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHL 516 (582)
Q Consensus 469 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~L 516 (582)
++++|++.... .+..-.-+|++ +.++..|+ .+++++|+|=-++..
T Consensus 102 a~~~Gvd~d~i--~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 102 ARALGVNTDEL--LVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp HHHTTCCGGGC--EEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHhCCCchhE--EEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccc
Confidence 55667754321 11122335555 44555554 369999999887755
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.41 E-value=0.17 Score=45.45 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 007982 396 VALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~G 415 (582)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999953
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.40 E-value=0.17 Score=45.47 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 007982 101 YGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~ 119 (582)
++++|.-++|||||+..|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999985
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.38 E-value=0.16 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHH---hCCCC
Q 007982 396 VALVGPNGAGKSTLLKLM---TGDLV 418 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll---~Gl~~ 418 (582)
+||+|..|||||||+..| +|...
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 799999999999999988 55543
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.21 E-value=0.14 Score=46.77 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|.|.=|||||||++-+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 688999999999999998864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.87 E-value=0.18 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.|.||.|+|||-|+..++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5799999999999999987643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.78 E-value=0.19 Score=45.10 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=44.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHH-HHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHHHc
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRL-INQVAHEIWVCENQAVTRWEGDIMDFKLHLKAKA 578 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~-~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~ 578 (582)
.+++|+||. -.|...+...|.+.+.+.. .-+|++|++..- ...+-.|...+. .-.-+.++....+.+.+
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~-----~~~~~~~~~~~~L~~~~ 180 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHY-----LAPPPEQYAVTWLSREV 180 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEE-----CCCCCHHHHHHHHHHHC
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEe-----cCCCCHHHHHHHHHHcC
Confidence 679999975 4566788889999999863 346888998763 333445544332 11345566666666554
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.47 E-value=0.31 Score=46.87 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
-...++| ++.++||.|||||.|.+.|++-
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 3455555 5666899999999999999853
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.33 E-value=0.18 Score=47.62 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
-++|+|..|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999984
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.04 E-value=0.32 Score=47.07 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
+|.|=|+=|+||||+++.|...+....+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~ 35 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSP 35 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCC
Confidence 6789999999999999999998765443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.84 E-value=0.24 Score=44.13 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
-+.||||.|.|||+++.-|+
T Consensus 45 n~lLvG~pGVGKTalv~~LA 64 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHH
Confidence 36799999999999999887
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.54 E-value=0.24 Score=46.58 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
=.+||||-.-+|||||++.|++.-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999653
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.50 E-value=0.12 Score=48.93 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.6
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
=+.|-+|++++|+|+.|+|||||+..+.
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred cccccCCceEeeccCCCCChHHHHHHHH
Confidence 4578899999999999999999997654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.47 E-value=0.24 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 007982 100 RYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~ 119 (582)
-+.||||.|+|||+++.-++
T Consensus 41 n~lLVG~~GvGKTalv~~la 60 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLA 60 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHH
Confidence 46899999999999999886
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.22 E-value=0.23 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+-++||+|+|||.|.|.|+.++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 4588999999999999998775
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.96 E-value=0.24 Score=47.89 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+|+|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.75 E-value=0.22 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=18.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHh
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
-..+.|+|++||||||+++.|.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHH
Confidence 3469999999999999997653
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.74 E-value=0.26 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+.++||+|+|||.|.+.|+...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.45 E-value=0.27 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 007982 101 YGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+.++||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6688999999999999998654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.99 E-value=0.17 Score=47.88 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 91 SELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 91 vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
.=+.+-+|++++|+|+.|+|||||+.-+.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34688899999999999999999987553
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.97 E-value=0.26 Score=49.07 Aligned_cols=44 Identities=9% Similarity=0.026 Sum_probs=35.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHh
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQ 547 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~ 547 (582)
|-++++||--+-........+....++++..+++++.++..+..
T Consensus 277 ~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 277 RLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp CEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred ceEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence 33688999887777667777777788889999999999877644
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.47 E-value=0.33 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+.||||.|.|||+++.-|+-.+
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999998887643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.27 E-value=0.38 Score=42.77 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.++|+|.=.+|||||++.|.+...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999986543
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=82.25 E-value=0.29 Score=46.72 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=17.3
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 007982 97 YGRRYGLLGLNGCGKSTLL 115 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl 115 (582)
.|++..+.|.||+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5899999999999999975
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.01 E-value=0.34 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-+.||||.|+|||+++.-++-.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999887643
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.99 E-value=0.29 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 46799999999999999998765
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.80 E-value=0.32 Score=47.02 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPL 420 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~ 420 (582)
+|+|=|+=||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58999999999999999999877543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=81.60 E-value=0.33 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++.|=|+=||||||+++.|....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 58899999999999999997543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.56 E-value=0.31 Score=43.33 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl 416 (582)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=81.47 E-value=0.32 Score=46.80 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+-.....| ++.++||.|+|||.|.+.|++.+
T Consensus 117 ~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 117 GGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 33445554 55668999999999999999864
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.45 E-value=0.28 Score=46.22 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.2
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.=+.|.+|++++|+|+.|+|||+|+..+.-
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHh
Confidence 346788999999999999999999876443
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.98 E-value=0.3 Score=46.72 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=17.1
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 007982 97 YGRRYGLLGLNGCGKSTLL 115 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl 115 (582)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999974
|