Citrus Sinensis ID: 007984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
Protein Sequence
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccccccccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHcccccccccEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccHHHHHcccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEccccccccccHHHHcccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEEcccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHccccccccEEEcccccccccccHHcccccHHHHHHccccccccccccccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHcccccccccEEEcccccccccccHHccccccEEEEccccccccc
Coil and Loop (DISEMBL)
MDRILKAARtsgslnlsnrslrdvpnevyknfdeagegdkwwEAVDLQKLILAHNNIEKLKEDlrnlplltVLNVSHNKLSELPAAIGELHMlksldvsfnsimkipdeigSATALVkfdcssnqlkelpsslgrclnlsdfkasnncitslpedladcskmskldvegnkltVLSNNLIASWTMLTELIASKnllngmpetIGSLSRLIRLDLhqnrilsipssisgcCSLAefymgnnalsALPAElgklsklgtldlhSNQLKEYCVEACQLRLSVLDlsnnslsglppeigkMTTLRKLLLtgnplrtlrsslvngptpALLKYLRSrlpenedseasttkEDLITMATRLSVTSKELslegmnlsaipseiweageitkldlsrnsiqelppelsscASLQTLILSRnkikdwpdAILTSLsslsclkldnnplrqvpsdgfkdipmlqiLDLSyniaslpenppfsslphLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKnltslteldlsdnnisalppelgllepslqalrldgnplrsIRRTILDRGTKAVLKYLKDKIPEN
Flexible Loop (DISEMBL)
mdrilkaartsgslnlsnrslrdvpnEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRtlrsslvngptPALLKYLRsrlpenedseasttkedlitMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAlrldgnplrsirrtildrgtkavlkylkdkipen
Low Complexity Region (SEG)
MDRILKAARTSGslnlsnrslrDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQlrlsvldlsnnslsglPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIltslsslsclklDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTdilrlqqlrildlSQNSLQSIPEGFKNLTSLTELDLSDNNISAlppelgllepslQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Disordered region (IsUnstruct)
***************************VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL*************************************MNLSAIPSEIWEAGEITKLDL***********LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD************LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL*******
Disordered Region (DISOPRED)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED**********ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKY*KDKI***
Disordered Region (DISEMBL)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL**********TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Disordered Region (DISPRO)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDxxxxxxxxxxxxxxxxxxxxxPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	582	2.2.26 [Sep-21-2011]
Q5ZLN0	603	Leucine-rich repeat-conta	yes	no	0.938	0.905	0.348	8e-75
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.939	0.904	0.349	2e-73
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.943	0.907	0.350	2e-71
Q5RFE9	602	Leucine-rich repeat-conta	yes	no	0.941	0.910	0.346	7e-70
Q9H9A6	602	Leucine-rich repeat-conta	yes	no	0.941	0.910	0.346	2e-69
Q4R3P6	602	Leucine-rich repeat-conta	N/A	no	0.941	0.910	0.346	3e-69
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.941	0.911	0.339	2e-68
Q9CRC8	602	Leucine-rich repeat-conta	yes	no	0.941	0.910	0.335	4e-64
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.649	0.655	0.300	6e-36
Q1L8Y7	561	Leucine-rich repeat prote	no	no	0.649	0.673	0.305	4e-35

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score =  281 bits (720), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 327/603 (54%), Gaps = 57/603 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +++AAR SG LNL+ R L +VP  V++ N D   EA      G  D+WWE  DL KLILA
Sbjct: 31  LIRAARKSGQLNLAGRGLGEVPQHVWRINLDTPEEAHQNLSFGAADRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N +  L ED+R LP LTVL+V  N+L+ LP+A+G+L  L+ LDVS N +  IP+E+   
Sbjct: 91  SNQLRCLSEDVRLLPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           + L       N+L  LP   G+ ++L +   SNN +T +P+  A    + +L++  N+L 
Sbjct: 151 SHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L  + I++   L +L  +KN L  +P  + S++ L +L L +N++ S+P  +  C  L 
Sbjct: 211 DLPAD-ISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLP-ELPSCKLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP 291
           E + G N +  L AE L  L+ L  L+L  N++K    E   L +L  LDL+NN +S LP
Sbjct: 269 ELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G ++ L+ L L GNPLRT+R  L+   T  LLKYLRSR+   +D +AS  +E  +T 
Sbjct: 329 YTLGNLSQLKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRI---QDDKASPNEEPPVTA 385

Query: 352 AT-----RLSV----TSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPEL 399
            T     R+++    T K L      ++ IP +++ A     +T ++ S+N +  +PP +
Sbjct: 386 MTLPSESRINMHAITTLKLLDYSEKQVAVIPDDVFSAVRSNPVTSVNFSKNQLTAIPPRI 445

Query: 400 SSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                S+  +    NKI       L +L  L+ L + NN L  +P +  + +  LQ+++L
Sbjct: 446 VELKDSVCDVNFGFNKISSV-SLELCTLHKLTHLDIRNNVLTSLPEE-MEALTRLQVINL 503

Query: 459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFK 517
           S+N                       + +  P+ + R+  L  + LS N + SI P   K
Sbjct: 504 SFN-----------------------RFKVFPSVLYRMLALETILLSNNQVGSIDPLQLK 540

Query: 518 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 577
            +  L  LDL +N++  +PPELG  E +L+ L L+GNP R+ R  IL +GT AVL+YL+ 
Sbjct: 541 KMEQLGTLDLQNNDLLQVPPELGNCE-TLRTLLLEGNPFRTPRAAILAKGTAAVLEYLRS 599

Query: 578 KIP 580
           +IP
Sbjct: 600 RIP 602

Gallus gallus (taxid: 9031)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 314/604 (51%), Gaps = 57/604 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L +VP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N+++ LP AI EL  L+ L++S N I ++P+E+   
Sbjct: 91  SNKLQALSEDISLLPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L  F    NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLRQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L+ L  LDLSNN +  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PENEDSEASTTKEDLI 349
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+  P+    EA+   +  +
Sbjct: 329 DTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQEAANPPDTAM 388

Query: 350 TMAT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELS 400
           T+ +         +T K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI        +S+S   C+ L                  L  LD+ 
Sbjct: 449 EMKDSVYDVNLGFNKI--------SSISLNLCMLLK-----------------LTHLDMR 483

Query: 460 YN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSI-PEGF 516
            N +ASLP  P   +L  LQ + L   + +  P  +  +  L  + +S N + SI P   
Sbjct: 484 NNALASLP--PEMEALTRLQSIILSFNRFKHFPDVLYTIPNLETILISSNQIGSIDPIQL 541

Query: 517 KNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 576
           K +T L+ LDL +N++  +PP LG  E SL+AL L+GNP R+ R TIL +GT A+L+YL+
Sbjct: 542 KKMTKLSTLDLQNNDLLQIPPALGNCE-SLRALHLEGNPFRNPRATILAKGTVAILEYLR 600

Query: 577 DKIP 580
            +IP
Sbjct: 601 SRIP 604

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 307/602 (50%), Gaps = 53/602 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L DVP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N++  LP AI EL  L+ L++S N I ++P E+   
Sbjct: 91  SNKLQLLSEDISLLPALVVLDIHDNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L  L  LDLSNN L  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL-------PENEDSEAST- 343
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+        E+E+S A+  
Sbjct: 329 CTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAM 388

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPELS 400
           T      + T   VT K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSESVVNTHAIVTLKTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ + + NN L  +PS+  + +  LQ + LS
Sbjct: 449 EMKDSVCDVNLGFNKISSI-SLNLCMLLKLTHIDMRNNVLTSLPSE-MEAMTRLQSVILS 506

Query: 460 YNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKN 518
           +N                       + +  P  + R+  L  + +S N + SI P     
Sbjct: 507 FN-----------------------RFKHFPDVLYRIPTLETILISSNQIGSIDPTQLIK 543

Query: 519 LTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 578
           +T L+ LDL +N++  +PP LG  E SL+AL L+GNP R+ R  IL +GT AVL+YL+ +
Sbjct: 544 MTKLSTLDLQNNDLLQIPPALGNCE-SLRALHLEGNPFRNPRAAILAKGTVAVLEYLRSR 602

Query: 579 IP 580
           IP
Sbjct: 603 IP 604

Xenopus tropicalis (taxid: 8364)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score =  265 bits (677), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 322/600 (53%), Gaps = 52/600 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELQNLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 AT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +      R  +T K L       + IP E+++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIRAIITLKILDYSDKQATLIPDEVFDAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-VESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                    F  LP +  LY             R+  L  + +S N + S+ P+  K + 
Sbjct: 506 --------RFKMLPEV--LY-------------RIFTLETILISNNQVGSVDPQKMKMME 542

Query: 521 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580
           +LT LDL +N++  +PPELG    +L+ L LDGNP R  R  IL +GT  +L+YL+D+IP
Sbjct: 543 NLTTLDLQNNDLLQIPPELGNC-VNLRTLLLDGNPFRVPRAAILMKGTAGILEYLRDRIP 601

Pongo abelii (taxid: 9601)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  264 bits (674), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 322/600 (53%), Gaps = 52/600 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   LR L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  +++  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E+++A +   +T ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVDLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                    F  LP +  LY             R+  L  + +S N + S+ P+  K + 
Sbjct: 506 --------RFKMLPEV--LY-------------RIFTLETILISNNQVGSVDPQKMKMME 542

Query: 521 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580
           +LT LDL +N++  +PPELG    +L+ L LDGNP R  R  IL +GT A+L+YL+D+IP
Sbjct: 543 NLTTLDLQNNDLLQIPPELGNC-VNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIP 601

Homo sapiens (taxid: 9606)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score =  263 bits (672), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 320/600 (53%), Gaps = 52/600 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+A+ EL  L+ L+VS N +   P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLKIFPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESAAETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E++ A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFNAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCMLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                    F  LP +  LY             R+  L  + +S N + S+ P+  K + 
Sbjct: 506 --------RFKMLPEV--LY-------------RIFTLETILISNNQVGSVDPQKMKMME 542

Query: 521 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580
           +LT LDL +N++  +PPELG    +L+ L LDGNP R  R  IL +GT A+L+YL+D+IP
Sbjct: 543 NLTTLDLQNNDLLQIPPELGNC-VNLRTLLLDGNPFRVPRAAILIKGTAAILEYLRDRIP 601

Macaca fascicularis (taxid: 9541)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 204/601 (33%), Positives = 314/601 (52%), Gaps = 53/601 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R L +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct: 29  LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct: 89  SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct: 149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct: 209 SLP-PAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP-ELPCCKTLK 266

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E + GNN +  L AE L  L+ L  L+L  N++K    E   L+ L  LDL+NN +S LP
Sbjct: 267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct: 327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct: 387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
                     ++I D  D       SL+ + L  N L  +P+D F  +  L  +DL  N 
Sbjct: 441 ----------HRIVDLKD-------SLADINLGFNKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNL 519
           + SLP       L  L+ + L   + +  P  + R+  L  + +S N +  I     K L
Sbjct: 483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query: 520 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 579
           + L+ LDLS+N+I  +PPELG    SL+AL LDGNP R+ R  IL +GT AVL+YL+ +I
Sbjct: 541 SRLSTLDLSNNDIMQVPPELGNCT-SLRALMLDGNPFRNPRAAILIKGTDAVLEYLRSRI 599

Query: 580 P 580
           P
Sbjct: 600 P 600

Danio rerio (taxid: 7955)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 201/600 (33%), Positives = 313/600 (52%), Gaps = 52/600 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
           +LKAAR+SG LNL+ R+L +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct: 31  LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct: 91  SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct: 151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P     C  L 
Sbjct: 211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP-EFPSCRQLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++  N +  L AE L  L  +  LDL  N+L+    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct: 329 CSLGNL-HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +   I LS NK+  +    L  L  L+ L L NN L  +P +    +  LQ ++LS+N
Sbjct: 448 KEMVLDINLSFNKLS-FISHELCLLQKLTFLDLRNNFLSSLPEE-MSSLTKLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                                  + +  P  + R+  L  + +S N + S+ P+  K + 
Sbjct: 506 -----------------------RFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKLME 542

Query: 521 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580
           +L  LDL +N++  +PPELG     L+ L LDGNP R  R  IL +GT AVL+YL+D+IP
Sbjct: 543 NLNTLDLQNNDLLQIPPELGNC-VQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIP 601

Mus musculus (taxid: 10090)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 210/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++DL+ LP LT+L
Sbjct: 169 LDLRHNKLREIPPVVYR-------------LSSLTTLFLRFNRITAVEKDLKMLPKLTML 215

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+  LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N+L +LP ++
Sbjct: 216 SIRENKIKHLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P  L+ CS++ +L++E N ++ L   L++S   +  L  ++
Sbjct: 276 GNLSSLSRLGLRYNRLSAVPRSLSKCSELDELNLENNNISTLPEGLLSSLVKVNSLTLAR 335

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 336 NCFQSYP--VGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 393

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  + VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 394 GTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 453

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 454 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 477

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +  LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 478 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFE-LALCS 536

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 537 KLSIMSIENCPLSHLP 552

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

>sp|Q1L8Y7|SHOC2_DANRE Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 213/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++D++NL  LT+L
Sbjct: 153 LDLRHNKLREIPAVVYR-------------VSSLTTLYLRFNRITTVEKDIKNLSKLTML 199

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+ +LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N L +LP ++
Sbjct: 200 SIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPETI 259

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +++      N ++++P  LA C ++ +L++E N ++VL   L++S   LT L  ++
Sbjct: 260 GNLASINRLGLRYNRLSAIPRSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLAR 319

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 320 NCFQSYP--VGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 377

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   + C L  L +L LSNN L  LP  IG +  LR+L L  N
Sbjct: 378 GTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNLLKKLPYGIGNLRKLRELDLEEN 437

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 438 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 461

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +Q LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 462 LTTLPRGIGHLTNLTYLGLGENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFE-LALCS 520

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 521 KLSIMSIENCPLSHLP 536

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
224114980	580	predicted protein [Populus trichocarpa]	0.993	0.996	0.791	0.0
359493861	584	PREDICTED: leucine-rich repeat-containin	1.0	0.996	0.784	0.0
225461397	588	PREDICTED: leucine-rich repeat-containin	1.0	0.989	0.772	0.0
356549743	583	PREDICTED: leucine-rich repeat-containin	0.998	0.996	0.771	0.0
449431828	583	PREDICTED: leucine-rich repeat-containin	0.998	0.996	0.753	0.0
255575336	571	leucine-rich repeat-containing protein,	0.955	0.973	0.767	0.0
356544024	586	PREDICTED: leucine-rich repeat-containin	0.998	0.991	0.771	0.0
1946300	581	hypothetical protein [Silene latifolia]	0.994	0.996	0.731	0.0
30683597	584	leucine-rich repeat-containing protein [	0.998	0.994	0.725	0.0
297830120	584	leucine-rich repeat family protein [Arab	0.998	0.994	0.725	0.0

>gi|224114980|ref|XP_002316909.1| predicted protein [Populus trichocarpa] gi|222859974|gb|EEE97521.1| predicted protein [Populus trichocarpa]

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/584 (79%), Positives = 511/584 (87%), Gaps = 6/584 (1%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAAR+SGSLNLSNRSL +VP+EVYK  D  GEG+KWWE V+LQKLILAHNNIE +
Sbjct: 1   MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAI 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NL  LTVLNVSHNKLS LPAAIGEL MLK LDVSFN I K+PDEIGSAT+LVKFD
Sbjct: 61  KEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSFNLIQKVPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQL+ELPSSLG CL LSD KASNN ITSLPEDLA CSK++K+DVEGNKL VLS NL+
Sbjct: 121 CSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLM 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTE  ASKNLL+ +P+  GSLSRLIRLDLHQNRI +IP SI GCCSLAEFYMGNN
Sbjct: 181 ASWTMLTEFNASKNLLSDIPDNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ALS LPAE+G LS+LGTLDLHSNQLKE   EAC+L+LS+LDLSNNSL+GLPPE+GKMTTL
Sbjct: 241 ALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLL GNPLRTLRSSLV+GPT  LL YLRSRL E EDS+A+T  K+DLI+M  RLSV+S
Sbjct: 301 RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL+G+ LSA+PSE+WE+ EI K+DLSRNSIQELP ELS C     LILSRNKI DWP
Sbjct: 361 KELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLELSLCC----LILSRNKISDWP 416

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNN L Q+PSDGF+ +PMLQILDLS N ASL  +P FSSLPHL+E
Sbjct: 417 CAILKSLPNLICLKLDNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKE 476

Query: 480 LYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYLR +QLRE P+DIL LQQL+IL+LSQNSL SIPEG KNLTSLTELDLSDNNISALPPE
Sbjct: 477 LYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPEGLKNLTSLTELDLSDNNISALPPE 536

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 582
           LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL DKIPE+
Sbjct: 537 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLMDKIPEH 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493861|ref|XP_003634682.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera] gi|302143032|emb|CBI20327.3| unnamed protein product [Vitis vinifera]

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/584 (78%), Positives = 522/584 (89%), Gaps = 2/584 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT-KEDLITMATRLSVTS 359
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +EDSEA+TT KE+++TMA R+S+TS
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI++WP
Sbjct: 361 KELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
             IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP LQE
Sbjct: 421 GVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL RMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ LPPE
Sbjct: 481 LYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIATLPPE 540

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 582
           LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE+
Sbjct: 541 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEH 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461397|ref|XP_002284846.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 1 [Vitis vinifera]

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/588 (77%), Positives = 519/588 (88%), Gaps = 6/588 (1%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-----SEASTTKEDLITMATRL 355
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +E      + A+T KE+++TMA R+
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEGVFLFFTSATTAKENVVTMAARI 360

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           S+TSKELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI
Sbjct: 361 SITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKI 420

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           ++WP  IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP
Sbjct: 421 QEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLP 480

Query: 476 HLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
            LQELYL RMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ 
Sbjct: 481 QLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIAT 540

Query: 535 LPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 582
           LPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE+
Sbjct: 541 LPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEH 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549743|ref|XP_003543250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/582 (77%), Positives = 516/582 (88%), Gaps = 1/582 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL ++P+EVY+N +  G  DKWWEA +LQKLILAHN+I  L
Sbjct: 1   MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLRNLP L+VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+KIP+EIGSA +LVK D
Sbjct: 61  KEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+L ELPSSLGRCL LSD K SNN IT+LPEDLA+CSK+SKLD+EGN+LTV+S NLI
Sbjct: 121 CSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           +SWTMLTE  +SKNLLNG+P +IG LSRLIRLDLHQNRI +IPSSI GC SL E Y+GNN
Sbjct: 181 SSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTTL
Sbjct: 241 NISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           RKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++ITMATRLS++SK
Sbjct: 301 RKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSK 360

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
           ELS+E + LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IKDWP 
Sbjct: 361 ELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPG 420

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480
           +IL SLSSLSCLKLDNNPLRQ+PSDGF+ +P LQILDLS N ASL + P FSSLP+LQEL
Sbjct: 421 SILKSLSSLSCLKLDNNPLRQIPSDGFEMVPKLQILDLSGNAASLLDGPAFSSLPYLQEL 480

Query: 481 YL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
           YL RM+L E P+DI+ L QLRILDLSQNSLQSIP G K LTSL ELDLS+NNI+ LPPEL
Sbjct: 481 YLRRMRLSEVPSDIVGLHQLRILDLSQNSLQSIPVGLKALTSLQELDLSNNNIAVLPPEL 540

Query: 540 GLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 581
           GLLEPSLQALRLDGNPLRSIRRT+LD+GTKAVL+YLKDK+PE
Sbjct: 541 GLLEPSLQALRLDGNPLRSIRRTVLDKGTKAVLQYLKDKLPE 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431828|ref|XP_004133702.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449478165|ref|XP_004155239.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/583 (75%), Positives = 503/583 (86%), Gaps = 2/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL DVP+EVY++ D     +KWWEAV+LQKLILAHNNI+ L
Sbjct: 1   MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
            E+LRNL  L VLNVSHNKLSELPAAIGEL  LK LDVSFNS+M+IPDEIGSAT+LVKFD
Sbjct: 61  SEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN L+ELP  LGRC +LSD KASNN I+SLP +LA+CSK++KLD+EGNKL V+S NLI
Sbjct: 121 CSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWT+LTEL ASKNLLN +PE IGSL RLIRL++ QN+I SIP SI  CC+LAE YMGNN
Sbjct: 181 ASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ++S LP E+G LS LGTLDLHSNQLKEY VEAC+L L VLDLSNNSLSGLPPEIGKMTTL
Sbjct: 241 SVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE-DLITMATRLSVTS 359
           RKLLLTGNP+RTLRSSLV+GPTPALL++LRSRLPENE  EAS+T+  D+ITMA R+S+TS
Sbjct: 301 RKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG  LSA+PSE+WE+ E+ KLDLS+NS QELP ELSSC SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL +L +L+CLKLDNNPL+Q+PSDGF+ +  LQ+LDLS NIA LPE+P FSSLP LQE
Sbjct: 421 GAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSKLQVLDLSGNIACLPEHPTFSSLPLLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL RM+L E P+ IL L+ +RILDLSQNS+Q +PE  KNL +LTELDLSDNNIS LPP+
Sbjct: 481 LYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPEELKNLAALTELDLSDNNISLLPPQ 540

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 581
           L LLEPSLQ LRLDGNPLRSIRR IL++GTKA+L YLKDK+ E
Sbjct: 541 LSLLEPSLQVLRLDGNPLRSIRRAILEKGTKAILAYLKDKLAE 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575336|ref|XP_002528571.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223532015|gb|EEF33826.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/559 (76%), Positives = 492/559 (88%), Gaps = 3/559 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLR + +EVY++ D AGEG+KWWE V+LQKLILAHN+IE L
Sbjct: 1   MDRVLKAARTSGSLNLSNRSLRQL-HEVYRSSDAAGEGEKWWETVELQKLILAHNSIESL 59

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLR LP LTVLNVS+NKL+ LPAAIGEL +LKSLDVSFN I  +PDEIGSAT+LVKFD
Sbjct: 60  KEDLRLLPQLTVLNVSNNKLTALPAAIGELSLLKSLDVSFNMIQTVPDEIGSATSLVKFD 119

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQLKELP S+GRCL+LS+ K SNN ITS PEDLA C K++K+DVEGNKL   S NL+
Sbjct: 120 CSSNQLKELPGSVGRCLDLSELKVSNNLITSFPEDLAKCLKLTKVDVEGNKLQTFSENLM 179

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKNLL  +P+ +GSLSRLIRLD HQN+I SIP SI GCCSL EFYMGNN
Sbjct: 180 ASWTMLTELNASKNLLTCIPDNVGSLSRLIRLDFHQNKISSIPPSIKGCCSLLEFYMGNN 239

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS LPAE+G++S+L TLDLHSNQLKE+ VE C+L LSVLDLSNNSLSGLP EIG+MTTL
Sbjct: 240 LLSTLPAEIGEVSRLATLDLHSNQLKEFPVEGCKLHLSVLDLSNNSLSGLPLEIGRMTTL 299

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLLTGNPLRT+RSSLV+GPTPALL+YLRSRL E EDSEA+T  ++D+I MA+RLS+++
Sbjct: 300 RKLLLTGNPLRTIRSSLVSGPTPALLRYLRSRLSEGEDSEANTPPRKDVIAMASRLSIST 359

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KEL L G+ LSA+PSE+WE+GEI K+DLS+NSIQ+LP ELSSC SLQTLILS+NKI++WP
Sbjct: 360 KELFLVGLGLSAVPSEVWESGEIVKVDLSKNSIQKLPVELSSCVSLQTLILSKNKIQEWP 419

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SLS+LSCLKLDNNPLRQ+P DGF+ + MLQILDLS N AS+ E PPFS LPHLQE
Sbjct: 420 GAILKSLSNLSCLKLDNNPLRQIPLDGFQAVSMLQILDLSGNPASVCELPPFSKLPHLQE 479

Query: 480 LYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYLR +QL E P+DIL L QLRILDLS+NSLQSIPEGFK+LTSLTELDLSDN+I+ALPPE
Sbjct: 480 LYLRHVQLHEVPSDILSLLQLRILDLSRNSLQSIPEGFKSLTSLTELDLSDNSIAALPPE 539

Query: 539 LGLLEPSLQALRLDGNPLR 557
           LG LEPSLQALRLDGNPLR
Sbjct: 540 LGFLEPSLQALRLDGNPLR 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544024|ref|XP_003540456.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/583 (77%), Positives = 515/583 (88%), Gaps = 2/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGD-KWWEAVDLQKLILAHNNIEK 59
           MDR+LKAAR SGSLNLSNRSL ++P+EVY+N +  G GD KWWEAV+LQKLILAHN+I  
Sbjct: 1   MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIAS 60

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119
           LKEDLRNLP L VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+ IP+EIGSA +LVK 
Sbjct: 61  LKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKL 120

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+NQL ELPSSLGRCL LSD K SNN ITSLPEDLA+CSK+SKLD+EGNKLTV+S NL
Sbjct: 121 DCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENL 180

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
           I+SWTMLTE  ASKNLLNG+P +IG LSRLIR+ +HQNRI +IPSSI GC SL E Y+GN
Sbjct: 181 ISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGN 240

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTT
Sbjct: 241 NNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTT 300

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           LRKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++I MATRLS+TS
Sbjct: 301 LRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELS+EG+ LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IK+WP
Sbjct: 361 KELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            +IL SLSSLSCLKLDNNPL+Q+P DGF+ +P LQILDLS N ASL + P FSSLP+LQE
Sbjct: 421 GSILKSLSSLSCLKLDNNPLKQIPLDGFEVVPKLQILDLSGNAASLLDVPAFSSLPYLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL RM+L E P+DI+ LQQLRILDLSQNSLQSIP G K+LTSL ELDLS+NNIS L PE
Sbjct: 481 LYLRRMRLSEVPSDIVGLQQLRILDLSQNSLQSIPVGLKDLTSLKELDLSNNNISVLLPE 540

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 581
           LGLLEPSLQALRLDGNPLRSIRRT+LDRGTKAVL+YLKDK+PE
Sbjct: 541 LGLLEPSLQALRLDGNPLRSIRRTVLDRGTKAVLQYLKDKLPE 583

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1946300|emb|CAA73132.1| hypothetical protein [Silene latifolia]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/581 (73%), Positives = 503/581 (86%), Gaps = 2/581 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLRDVP EVYKNFD A EG+ WWE VDLQKLILAHNNIE L
Sbjct: 1   MDRLLKAARTSGSLNLSNRSLRDVPIEVYKNFDGAPEGENWWETVDLQKLILAHNNIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NLPLLTVLNVSHNKL++LPAAIGEL  LKSLDVSFN +  IP EIGSAT+LVK D
Sbjct: 61  KEDLKNLPLLTVLNVSHNKLTQLPAAIGELPSLKSLDVSFNLLTNIPAEIGSATSLVKMD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+NQLKELPSSLG+CL+L++ KASNN I SLP+DLA C+K+ K+D+EGNKLT L + ++
Sbjct: 121 CSNNQLKELPSSLGQCLDLAELKASNNLIGSLPDDLAYCTKLLKVDIEGNKLTTLLDPVV 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
            SW+ML+EL ASKNLL G+PETIG+L RLIRLDLHQNRI SIPSSI GC SL EF++G+N
Sbjct: 181 GSWSMLSELNASKNLLTGLPETIGTLVRLIRLDLHQNRIKSIPSSIKGCSSLVEFFIGSN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+LP+ELG+LS+L  LDL SNQL EY  EAC+LRLSVLDLSNNSLSGLP EIG MT+L
Sbjct: 241 LLSSLPSELGELSQLSVLDLRSNQLTEYPAEACKLRLSVLDLSNNSLSGLPAEIGLMTSL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNP+RT+RS+LV GPT ALLKYLR RLP  E+++  T +K++++ MA+RLS+T+
Sbjct: 301 RKLVLIGNPMRTIRSTLVTGPTAALLKYLRGRLPSAEEAQVMTPSKDNMVAMASRLSITT 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL GM L A+P E+ E+ EITK+DLS+NSIQELP  LS+C+SL+ LILSRNKIKDWP
Sbjct: 361 KELSLVGMGLIAVPPEVCESNEITKVDLSKNSIQELPVTLSACSSLEVLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
           +  L SL +L+CL+LDNNPL +VP +GF  +P LQILDLS  ++SL +NP F+SL HL E
Sbjct: 421 EDALKSLPNLTCLRLDNNPLNKVPLNGFDAVPRLQILDLSGCVSSLVDNPAFASLQHLVE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL R++L+E P+DIL L++L+ILDLSQNSL SIP+GF+NLTSLTELDLSDN+I  LPPE
Sbjct: 481 LYLRRVKLQEVPSDILMLRKLQILDLSQNSLHSIPQGFQNLTSLTELDLSDNSIGTLPPE 540

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 579
           LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL+YLKDKI
Sbjct: 541 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLQYLKDKI 581

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683597|ref|NP_188160.2| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|21703129|gb|AAM74505.1| AT3g15410/MJK13_7 [Arabidopsis thaliana] gi|24111377|gb|AAN46812.1| At3g15410/MJK13_7 [Arabidopsis thaliana] gi|332642149|gb|AEE75670.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/583 (72%), Positives = 496/583 (85%), Gaps = 2/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+G KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLPPE 540

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 581
           LGLLEP+L+ LRLDGNPLRSIRR IL+RGTKAVL YLKD++P+
Sbjct: 541 LGLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLNYLKDRLPD 583

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830120|ref|XP_002882942.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328782|gb|EFH59201.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/583 (72%), Positives = 497/583 (85%), Gaps = 2/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+I  L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPIEVYQCLETTGEGENWWEAVDLQKLILAHNDIAVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHN LS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNNLSQLPAAIGELTAMKSLDVSFNSITELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+ KELP S+GRCL+LSD KASNN I+SLPED+ +CSK+SKLDVEGN+LT LS N I
Sbjct: 121 CSSNRFKELPESIGRCLDLSDLKASNNQISSLPEDMVNCSKLSKLDVEGNRLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKN+L+G+P+ IGSLSRLIRLDLHQN+ILS+P SI  C SL EFY+G N
Sbjct: 181 ASWTMLTELNASKNMLSGLPQNIGSLSRLIRLDLHQNKILSVPPSIGDCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLSA+PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSAVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  L+ILDLS N  S  E+P F  LP LQE
Sbjct: 421 GAILKSLPNLVCLKLDNNPLTQIPLDGFQAVSGLRILDLSGNAVSFREHPKFCHLPQLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+  KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKSIKNMTSLKHLDISNNNISSLPPE 540

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 581
           LGLLEP+L+ LRLDGNPLRSIRR IL+RGTKAVL YLKD++P+
Sbjct: 541 LGLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLNYLKDRLPD 583

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.941	0.911	0.294	1.4e-55
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.941	0.910	0.301	4.3e-54
FB|FBgn0028487	693	f-cup "flyers-cup" [Drosophila	0.917	0.770	0.268	1.8e-38
UNIPROTKB|E1BU15	582	SHOC2 "Leucine-rich repeat pro	0.630	0.630	0.303	7.2e-36
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.713	0.742	0.284	7.4e-36
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.713	0.742	0.284	7.4e-36
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.690	0.788	0.303	5.1e-35
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.621	0.645	0.301	8.5e-34
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.606	0.505	0.296	3.3e-33
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.606	0.505	0.296	3.3e-33

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 177/601 (29%), Positives = 279/601 (46%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
             +LKAAR SG          +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct:    29 LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct:    89 SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct:   149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct:   209 SLPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPE-LPCCKTLK 266

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E + GNN +  L AE L  L+ L  L+L  N++K    E                    P
Sbjct:   267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct:   327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query:   352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct:   387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query:   403 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
                       ++I D  D++              N L  +P+D F  +  L  +DL  N+
Sbjct:   441 ----------HRIVDLKDSLADINLGF-------NKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query:   463 A-SLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNL 519
               SLP       L  L+ + L   + +  P              S N +  I     K L
Sbjct:   483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query:   520 TSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 579
             + L+ LDLS+N+I              +AL LDGNP R+ R  IL +GT AVL+YL+ +I
Sbjct:   541 SRLSTLDLSNNDIMQVPPELGNCTSL-RALMLDGNPFRNPRAAILIKGTDAVLEYLRSRI 599

Query:   580 P 580
             P
Sbjct:   600 P 600

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 181/600 (30%), Positives = 286/600 (47%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
             +LKAAR+SG          +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct:    31 LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct:    91 SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
               L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct:   151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P   S C  L 
Sbjct:   211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPS-CRQLK 268

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E ++  N +  L AE L  L  +  LDL  N+L+    E A                  P
Sbjct:   269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct:   329 CSLGNLH-LKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query:   352 AT--RLSV----TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              +  R+++    T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct:   388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query:   403 ASLQTLI-LSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +   I LS NK+      +             NN L  +P +    +  LQ ++LS+N
Sbjct:   448 KEMVLDINLSFNKLSFISHELCLLQKLTFLDLR-NNFLSSLPEE-MSSLTKLQTINLSFN 505

Query:   462 IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLT 520
                      F   P +  LY R+   EA               S N + S+ P+  K + 
Sbjct:   506 --------RFKVFPEV--LY-RISTLEA------------VLISNNQVGSVDPQKMKLME 542

Query:   521 SLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580
             +L  LDL +N++              + L LDGNP R  R  IL +GT AVL+YL+D+IP
Sbjct:   543 NLNTLDLQNNDL-LQIPPELGNCVQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIP 601

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0028487 f-cup "flyers-cup" [Drosophila melanogaster (taxid:7227)]

 Score = 417 (151.9 bits), Expect = 1.8e-38, P = 1.8e-38
 Identities = 149/555 (26%), Positives = 236/555 (42%)

Query:    37 EGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSL 96
             E D WW  V L  L L+ N +  +   + NL  LTVL +  N L ELP  IG+L  L  L
Sbjct:   148 EEDAWWNQVPLNNLDLSSNTLTHISPKIENLQSLTVLTLHDNALVELPPEIGKLEKLVRL 207

Query:    97 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL 156
             +VS N + ++P  + S   L   + S N+  EL   +     L      +N I SLP  +
Sbjct:   208 NVSHNKLSQLPRAMYSLPELRHLNISYNEFVELNPDISDLHMLEFLDGGHNNIQSLPGGI 267

Query:   157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
                 +++ L +  N +  L  +L+ +   L ++    N L  +PE +G L +L  L L  
Sbjct:   268 GFLVRLTALLLPYNHIKELPPDLV-NMRSLQKIDLMHNDLTSLPEDMGLLRKLDCLYLQH 326

Query:   217 NRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQX 275
             N IL +P    G  +L E +  NN +  +P A    L  L  LDL  N++ E   E C  
Sbjct:   327 NDILELPE-FEGNEALNELHASNNFIKIIPKAMCSNLPHLKILDLRDNKITELPDELCLL 385

Query:   276 XXXXXXXXXXXXXXX-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
                             P  +  +  L  L + GNP++T+R  ++   T  +LK L  R  
Sbjct:   386 RNLNRLDVSNNTISVLPVTLSSLAHLISLQVEGNPIKTIRRDILQCGTTRILKTLHDRAV 445

Query:   335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI--TK-LDLSRNS 391
                  E     +D  T A  +SVT   L    M+   IP    +  ++  T+ L ++   
Sbjct:   446 AKAKEEGGGV-DDASTSAG-ISVT--RLRGGQMDDGDIPGNFPDRYKLRHTRTLAVNLEE 501

Query:   392 IQELPPELSSCA---SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
             +  +P ++   A    +  +  +RN++   P+ +             NN +  VP     
Sbjct:   502 LTSVPDQVFQIARDEGVHVVDFARNQLSTLPNGLQHMKDLVTELVLSNNVIGYVPQF-IS 560

Query:   449 DIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYL-RMQLREAPTXXXXXXXXXXXXXSQ 506
                 +  L+LS N+ + LP    F  L  L+EL +   +    P              S+
Sbjct:   561 QFTRISFLNLSNNLLNDLPTE--FGVLNTLRELNIANNRFPCIPNCVYELQGLEILIASE 618

Query:   507 NSLQSIP-EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 565
             N ++ +   G +N+  L+ LDL +N+I                L L GNP R  R  IL 
Sbjct:   619 NHIKMLNVSGLQNMRRLSTLDLRNNDIETVPPILGNLTNITH-LELVGNPFRQPRHQILM 677

Query:   566 RGTKAVLKYLKDKIP 580
             +GT A++ YL+D+IP
Sbjct:   678 KGTDAIMSYLRDRIP 692

GO:0007265 "Ras protein signal transduction" evidence=ISS

UNIPROTKB|E1BU15 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 389 (142.0 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 117/386 (30%), Positives = 190/386 (49%)

Query:    42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             +    L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N
Sbjct:   189 YRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHN 248

Query:   102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161
              +  +P+EIGS T +   D   N+L +LP ++G   +LS      N ++++P+ LA CS+
Sbjct:   249 QLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSE 308

Query:   162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRIL 220
             + +L++E N ++ L   L++S   LT L  ++N     P    S  S +  L++  NRI 
Sbjct:   309 LDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRIN 368

Query:   221 SIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXX 279
              IP  I S    L++  M +N L++LP + G  + +  L+L +NQL +   +        
Sbjct:   369 KIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLE 428

Query:   280 XXXXXXXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                         P  IG +  LR+L L  N L +L + +      A LK L+  +  N  
Sbjct:   429 VLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQ 482

Query:   339 SEASTTKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELP 396
                 TT    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP
Sbjct:   483 L---TTLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLP 534

Query:   397 PELSSCASLQTLILSRNKIKDWPDAI 422
              EL+ C+ L  + +    +   P  I
Sbjct:   535 FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 387 (141.3 bits), Expect = 7.4e-36, P = 7.4e-36
 Identities = 131/460 (28%), Positives = 213/460 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDL-SYNIASLPENPPFSSL--PHLQELYLRMQ 485
             ++ + Q L++ S   + L + PP  +   P L   YL+MQ
Sbjct:   509 ELALCQSLEIMSIENSPLSQIPPEITAGGPSLVIQYLKMQ 548

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 387 (141.3 bits), Expect = 7.4e-36, P = 7.4e-36
 Identities = 131/460 (28%), Positives = 213/460 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDL-SYNIASLPENPPFSSL--PHLQELYLRMQ 485
             ++ + Q L++ S   + L + PP  +   P L   YL+MQ
Sbjct:   509 ELALCQSLEIMSIENSPLSQIPPEITAGGPSLVIQYLKMQ 548

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 128/422 (30%), Positives = 190/422 (45%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA--IGELHMLKSLDVSFNSIMKIPDEI 110
             A N I  +  ++ +L  L  L +S+NKL   P    IG L  L  LD+S N +  +P EI
Sbjct:    68 AKNRINYIPPEIGSLATLKQLFLSNNKLFYTPITPNIGALKNLTRLDLSSNQLDDLPVEI 127

Query:   111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
              +  AL   D S NQL+  P   G+  NL  F  S N + SLP +++   K+ +L+V  N
Sbjct:   128 SNCEALEYLDISDNQLQSFPLEFGKLYNLQVFNCSKNSLKSLPSEISGWVKLEELNVSNN 187

Query:   171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
             +L  L N  I    +L+ L    N L  +PE + S+  L  LDL  N  L     +S   
Sbjct:   188 QLAFLPNQ-ICLLGLLSTLNVGFNKLQQLPEELSSMVSLTNLDLKVNPPLQYVPQLSNLR 246

Query:   231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSN-QLKEYCVE-ACQXXXXXXXXXXXXXX 288
              L    + N  ++ LP  LG LS+L  LD+  N QLKE   + A                
Sbjct:   247 QLKILSIRNLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR 306

Query:   289 XXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP-ALLKYLRSRLPENEDSEASTTKED 347
               P E+G +  L+ L L  N L     ++ N P+    L  L+  L  N    A     +
Sbjct:   307 IVPREVGNLINLQTLDLRQNKL-----TIDNIPSEIGKLVNLKKLLLSNNLLIA--LPPE 359

Query:   348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
             + +M        KE       L AIP+EI E   +TK++LS N +  +P    + + LQ 
Sbjct:   360 IASMKAL-----KEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query:   408 LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
               L  N+I + P  +             +N L ++P + F D+  L ILD+ +N  ++P 
Sbjct:   415 CDLKSNEIAELPTTLDGLKSCTKIDLS-HNMLTELPWE-FGDLIGLTILDVGHNPLTIPP 472

Query:   468 NP 469
             NP
Sbjct:   473 NP 474

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 8.5e-34, P = 8.5e-34
 Identities = 115/381 (30%), Positives = 185/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   173 LTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 232

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +++      N ++++P  LA C ++ +L+
Sbjct:   233 PKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELN 292

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++VL   L++S   LT L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   293 LENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFG 352

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   + C           
Sbjct:   353 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLS 412

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   413 NNLLKKLPYGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 463

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL   +P EI     +  L L+ N ++  LP EL+ 
Sbjct:   464 TLPRGIGHLTNLTY----LGL-GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELAL 518

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   519 CSKLSIMSIENCPLSHLPPQI 539

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CRC8	LRC40_MOUSE	No assigned EC number	0.335	0.9415	0.9102	yes	no
Q9H9A6	LRC40_HUMAN	No assigned EC number	0.3466	0.9415	0.9102	yes	no
Q5M8G4	LRC40_XENTR	No assigned EC number	0.3504	0.9432	0.9074	yes	no
Q5ZLN0	LRC40_CHICK	No assigned EC number	0.3482	0.9381	0.9054	yes	no
Q5RFE9	LRC40_PONAB	No assigned EC number	0.3466	0.9415	0.9102	yes	no
Q7SXW3	LRC40_DANRE	No assigned EC number	0.3394	0.9415	0.9118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110941	hypothetical protein (581 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.8595.1.1	hypothetical protein (375 aa)			•						0.490
	eugene3.00410223	hypothetical protein (478 aa)			•						0.488
	eugene3.00131095	annotation not avaliable (394 aa)			•						0.484
	eugene3.00190610	annotation not avaliable (370 aa)			•						0.483
	fgenesh4_pg.C_LG_XVIII001032	hypothetical protein (534 aa)			•						0.478
	eugene3.100750001	hypothetical protein (275 aa)			•						0.478
	fgenesh4_pg.C_scaffold_11988000001	hypothetical protein (315 aa)			•						0.455
	fgenesh4_pg.C_scaffold_13412000001	hypothetical protein (444 aa)			•						0.453
	eugene3.06320001	hypothetical protein (344 aa)			•						0.450
	gw1.XI.3221.1	hypothetical protein (380 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	582
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-19
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-15
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-11
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-08
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  117 bits (295), Expect = 2e-27
 Identities = 148/488 (30%), Positives = 220/488 (45%), Gaps = 54/488 (11%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN 124
           +P L  L++S+N LS E+P  IG    LK LD+  N ++ KIP+ + + T+L     +SN
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 125 QL-KELPSSLGRCLNLS-DFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           QL  ++P  LG+  +L   +   NN    +P ++   + ++ LD+  N LT    + + +
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM-GN 239
              L  L   +N L+G +P +I SL +LI LDL  N +   IP  +    +L   ++  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVE--ACQLRLSVLDLSNNSLSG-LPPEIGK 296
           N    +P  L  L +L  L L SN+      +       L+VLDLS N+L+G +P  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS----RLPENEDSEASTTKEDLITMA 352
              L KL+L  N L         G  P  L   RS    RL +N  S       +L +  
Sbjct: 379 SGNLFKLILFSNSL--------EGEIPKSLGACRSLRRVRLQDNSFSG------ELPSEF 424

Query: 353 TRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
           T+L +    L +   NL   I S  W+   +  L L+RN      P+      L+ L LS
Sbjct: 425 TKLPLVYF-LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           RN+        L SLS L  LKL  N L     D       L  LDLS+N  S      F
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 472 SSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDN 530
           S +P L +                      LDLSQN L   IP+   N+ SL ++++S N
Sbjct: 544 SEMPVLSQ----------------------LDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 531 NI-SALPP 537
           ++  +LP 
Sbjct: 582 HLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (288), Expect = 1e-26
 Identities = 137/489 (28%), Positives = 216/489 (44%), Gaps = 54/489 (11%)

Query: 66  NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSS 123
           N   +  +++S   +S ++ +AI  L  ++++++S N +   IPD+I + ++ +++   S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           N         G   NL     SNN ++  +P D+   S +  LD+ GN   VL   +  S
Sbjct: 127 NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN---VLVGKIPNS 183

Query: 183 WTMLTEL----IASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM 237
            T LT L    +AS  L+  +P  +G +  L  + L  N +   IP  I G  SL    +
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 238 GNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE- 293
             N L+  +P+ LG L  L  L L+ N+L      +     +L  LDLS+NSLSG  PE 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           + ++  L  L L  N           G  P  L    + LP                   
Sbjct: 304 VIQLQNLEILHLFSNNF--------TGKIPVAL----TSLP------------------- 332

Query: 354 RLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILS 411
           RL V    L L     S  IP  + +   +T LDLS N++  E+P  L S  +L  LIL 
Sbjct: 333 RLQV----LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N ++      L +  SL  ++L +N         F  +P++  LD+S N      N   
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 472 SSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSD 529
             +P LQ L L R +      D    ++L  LDLS+N    ++P    +L+ L +L LS+
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 530 NNISALPPE 538
           N +S   P+
Sbjct: 509 NKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 9e-19
 Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 24/282 (8%)

Query: 46  DLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           +L+ L L  NN   K+   L +LP L VL +  NK S E+P  +G+ + L  LD+S N++
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 104 M-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS 160
             +IP+ + S+  L K    SN L+ E+P SLG C +L   +  +N  +  LP +     
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
            +  LD+  N L    N+       L  L +A      G+P++ GS  RL  LDL +N+ 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 220 L-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK--------EYC 269
             ++P  +     L +  +  N LS  +P EL    KL +LDL  NQL         E  
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 270 VEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310
           V      LS LDLS N LSG +P  +G + +L ++ ++ N L
Sbjct: 548 V------LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 78.9 bits (194), Expect = 1e-15
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 44  AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           AV+   L L+ N +  L   L  L  L +L+ S     +    +  L  L SLD++ N +
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGR-CLNLSDFKASNNCITSLPEDLADCSKM 162
                E+   T L   D  +N + ++P  +G    NL +   S+N I SLP  L +   +
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             LD+  N L+ L   L    + L  L  S N ++ +P  I  LS L  LDL  N I+ +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
            SS+S   +L+   + NN L  LP  +G LS L TLDL +NQ+           L  LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 283 SNNSLSGLPPEIGKMTTLRKLLL 305
           S NSLS   P I  +  L +LLL
Sbjct: 285 SGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 77.7 bits (191), Expect = 3e-15
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 26/292 (8%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIM 104
            L  L L  N +     +L  L  LT L++ +N ++++P  IG L   LK LD+S N I 
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
            +P  + +   L   D S N L +LP  L    NL++   S N I+ LP ++   S    
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA--- 210

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
                                L EL  S N +  +  ++ +L  L  L+L  N++  +P 
Sbjct: 211 ---------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           SI    +L    + NN +S++ + LG L+ L  LDL  N L         L L +  L N
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
             L+    E+   + L    +  N   +   +L    +   L  L + L E+
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 71.7 bits (175), Expect = 5e-13
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAV------DLQKLILAHNNIEKLKEDLRN 66
           +L L N  L+ +P  +  N            ++       +Q++ L+ N I +L E L +
Sbjct: 203 TLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS 262

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
              L  L++ HNK+S LP  + E   L+ L V  NSI  +P  + S   +   +  SN L
Sbjct: 263 A--LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP +L     L   +A  N +TSLP  L    ++  LDV  N++TVL   L  +   +
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT---I 369

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           T L  S+N L  +PE + +  ++  +   +N ++ +P S+
Sbjct: 370 TTLDVSRNALTNLPENLPAALQI--MQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 66.6 bits (162), Expect = 2e-11
 Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 49/271 (18%)

Query: 310 LRTLRSSLVNGPTPALLKYLR-SRLPENEDSEAST---TKEDLITMATRLSVTSKELSLE 365
           ++ +R  L N  T   LK L  + +P     + +T      +L ++   L    K L   
Sbjct: 169 VQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYAN 228

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
              L++IP+ + +   I +++LS N I ELP  L S  +LQ+L L  NKI   P+ +   
Sbjct: 229 SNQLTSIPATLPDT--IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEE 284

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ 485
           L  LS      N +R +P+     I  L +   S  + +LPE  P               
Sbjct: 285 LRYLSVYD---NSIRTLPAHLPSGITHLNVQSNS--LTALPETLPPG------------- 326

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPS 545
                        L+ L+  +N+L S+P        L  LD+S N I+ LP     L P+
Sbjct: 327 -------------LKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPET---LPPT 368

Query: 546 LQALRLDGNPLRSIRRTILDRGTKAVLKYLK 576
           +  L +  N L     T L     A L+ ++
Sbjct: 369 ITTLDVSRNAL-----TNLPENLPAALQIMQ 394

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +N+LK LP +L    N+    A++N +TS+P  L D  +  +L +  N++T L   L ++
Sbjct: 208 NNELKSLPENLQG--NIKTLYANSNQLTSIPATLPDTIQEMELSI--NRITELPERLPSA 263

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
              L  L    N ++ +PE +     L  L ++ N I ++P+ +     +    + +N+L
Sbjct: 264 ---LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
           +ALP  L     L TL+   N L      +    L VLD+S N ++ LP  +    T+  
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVLPETLPP--TITT 371

Query: 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRS------RLPEN 336
           L ++ N L  L  +L     PA L+ +++      RLPE+
Sbjct: 372 LDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 98/371 (26%), Positives = 145/371 (39%), Gaps = 42/371 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
             L    +NL +       L  S N L  +P ++  L  L  L       L    ++   
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSL 287
             L    +  N L +  +EL +L+ L +LDL +N + +    +   +  L  LDLS+N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
             LP  +  +  L+ L L+ N L  L   L N                            
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL------------------------ 188

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         L L G  +S +P EI     + +LDLS NSI EL   LS+  +L  
Sbjct: 189 ------------NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS NK++D P+  + +LS+L  L L NN +  + S     +  L+ LDLS N  S   
Sbjct: 237 LELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293

Query: 468 NPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDL 527
            P  + L  L EL L + L     ++     L   ++  N   S PE    L SL  L  
Sbjct: 294 -PLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWT 352

Query: 528 SDNNISALPPE 538
            DN +      
Sbjct: 353 LDNALDESNLN 363

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 4/178 (2%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L+LS N++  LP  LS   SL  L  S     D  +  L +L  L  L L+ N LR  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSN 108

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRI 501
            S    ++  L  LDL  N  +           +L+EL L   ++   P+ +  L  L+ 
Sbjct: 109 IS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
           LDLS N L  +P+   NL++L  LDLS N IS LPPE+ LL  +L+ L L  N +  +
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS-ALEELDLSNNSIIEL 224

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+++ L  N+   +L  +   LPL+  L++S+N L   + +   ++  L+ L ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 105 -KIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161
             +PD  GS   L   D S NQ    +P  LG    L   K S N ++  +P++L+ C K
Sbjct: 466 GGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  LD+  N+L+       +   +L++L  S+N L+G +P+ +G++  L+++++  N + 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 221 -SIPSS 225
            S+PS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 498 QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 556
            L+ LDLS N L  IP+G FK L +L  LDLS NN++++ PE     PSL++L L GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 385 LDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-QV 442
           LDLS N +  E+P ++ S +SL+ L L  N +       LT+L+SL  L L +N L  Q+
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 443 PSDGFKDIPMLQILDLSYNIAS--LP-ENPPFSSLPHLQELYLRMQLREAPTDILRLQQL 499
           P +    +  L+ + L YN  S  +P E    +SL HL  +Y  +     P+ +  L+ L
Sbjct: 205 PRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNL 262

Query: 500 RILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 556
           + L L QN L   IP    +L  L  LDLSDN++S   PEL +   +L+ L L  N  
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 490 PTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPE-LGLLEPSLQ 547
           P DI +L+ L+ ++LS NS++ +IP    ++TSL  LDLS N+ +   PE LG L  SL+
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLR 493

Query: 548 ALRLDGNPL 556
            L L+GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 94/344 (27%), Positives = 140/344 (40%), Gaps = 20/344 (5%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQ-LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKM 297
           +N L  LP+ L +L  L  L       L         L L  LDL+ N L     E+ ++
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL 115

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
           T L  L L  N +       + G   + LK L   L +N+     +   +L  +      
Sbjct: 116 TNLTSLDLDNNNI--TDIPPLIGLLKSNLKELD--LSDNKIESLPSPLRNLPNL------ 165

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
             K L L   +LS +P  +     +  LDLS N I +LPPE+   ++L+ L LS N I +
Sbjct: 166 --KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
              + L++L +LS L+L NN L  +P +   ++  L+ LDLS N  S        SL +L
Sbjct: 224 LLSS-LSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS--SISSLGSLTNL 279

Query: 478 QELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 536
           +EL L    L  A   I  L  L  L L+   L       K  + L   ++  N  ++ P
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLLELLLN-LLLTLKALELKLNSILLNNNILSNGETSSP 338

Query: 537 PELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580
             L  +  SL  L    N L               +  L D + 
Sbjct: 339 EAL-SILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVK 381

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L++  N L+ LPA    L  L        S+  +P        L +   S NQL 
Sbjct: 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA 315

Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   +   ++S  D +   L  L + L   W    
Sbjct: 316 SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLD----------LHQNRILSIPSSISGCCSLAEFYM 237
            L +   L +G+ E I S +RL  L           +  NR+ S+P   SG  SL+ +  
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-- 430

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
             N L+ LP  L  LS   T++L  N L E  ++A
Sbjct: 431 -RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 52.1 bits (124), Expect = 6e-07
 Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           +T L +  N L+ LPA   E   L++L+VS N +  +P        L  F      L  L
Sbjct: 224 ITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280

Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           PS L +                 L +   S+N + SLP   A  S++ KL    N+LT  
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-- 335

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +L    + L EL  S N L  +P      S L +L  + NR+ S+P+  SG   L E 
Sbjct: 336 --SLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 387

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEI 294
            +  N L++LP      S+L  L +  N+L     + +  L LSV     N L+ LP  +
Sbjct: 388 IVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESL 441

Query: 295 GKMTTLRKLLLTGNPL--RTLRS 315
             +++   + L GNPL  RTL++
Sbjct: 442 IHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +L++L LS N++   PD     L +L  L L  N L  +  + F  +P L+ LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +  LDLS N +  +P        +L+ L LS N +        + L SL  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 476 HLQELYLR-MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 532
           +L+ L L   +L   P    + L  L++LDLS N+L SI    F  L SL  LDLS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 245 LPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLR 301
           +P ++ KL  L +++L  N ++         +  L VLDLS NS +G  PE +G++T+LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 302 KLLLTGNPL 310
            L L GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L+ L L++N +  + +   + LP L VL++S N L+ +   A   L  L+SLD+S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 76/264 (28%), Positives = 104/264 (39%), Gaps = 57/264 (21%)

Query: 360 KELSLEGMNL-----SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-------LQT 407
           + L LEG  L      A+ S +     + +L LS N    +P  L S          LQ 
Sbjct: 26  QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85

Query: 408 LILSRNKIKDWPDAILTSL---SSLSCLKLDNNPLRQVP----SDGFKDIPM-LQILDLS 459
           L LS N +      +L SL   SSL  LKL+NN L        + G KD+P  L+ L L 
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145

Query: 460 YN---------IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-----RLQQLRILDL 504
            N         +A         +   L+EL L    + +A    L         L +LDL
Sbjct: 146 RNRLEGASCEALAKA-----LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 505 SQNSL-----QSIPEGFKNLTSLTELDLSDNNI-----SALPPELGLLEPSLQALRLDGN 554
           + N L      ++ E   +L SL  L+L DNN+     +AL   L     SL  L L  N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

Query: 555 PLRSIRRTILDRGTKAVLKYLKDK 578
                   I D G K + + L +K
Sbjct: 261 -------DITDDGAKDLAEVLAEK 277

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 60  LKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALV 117
           +  D+  L  L  +N+S N +   +P ++G +  L+ LD+S+NS    IP+ +G  T+L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 118 KFDCSSNQLK-ELPSSLG-RCLNLSDFKASNN 147
             + + N L   +P++LG R L+ + F  ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 497 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
             L  LDLS N +  +P    NL +L  LDLS N I+ L P
Sbjct: 1   TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 30/117 (25%)

Query: 429 LSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR 487
           +  L LDN  LR  +P+D                          S L HLQ + L     
Sbjct: 420 IDGLGLDNQGLRGFIPND-------------------------ISKLRHLQSINLSGNSI 454

Query: 488 EA--PTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISA-LPPELG 540
               P  +  +  L +LDLS NS   SIPE    LTSL  L+L+ N++S  +P  LG
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 84/291 (28%), Positives = 124/291 (42%), Gaps = 33/291 (11%)

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           L+V  + LT L + L A    +T L+   N L  +P     L  L   ++  N++ S+P 
Sbjct: 206 LNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPV 259

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLS 283
              G   L+ F      L ALP+ L KL   G      NQL    V    L+ LSV D  
Sbjct: 260 LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG------NQLTSLPVLPPGLQELSVSDNQ 313

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL----VNGPTPALLKYLRSRLPENEDS 339
             SL  LP E+ K+      L +   L TL S L    V+    A L  L S L +    
Sbjct: 314 LASLPALPSELCKLWAYNNQLTS---LPTLPSGLQELSVSDNQLASLPTLPSELYK---- 366

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                  + +T    L    KEL + G  L+++P       E+ +L +S N +  LP   
Sbjct: 367 --LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLP 421

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           S   SL    + RN++   P++ L  LSS + + L+ NPL +      ++I
Sbjct: 422 SGLLSLS---VYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI 468

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           +L  L L NN L  +P   FK +P L++LDLS N + S+     FS LP L+ L L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 208 RLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            L  LDL  NR+  IP  +  G  +L    +  N L+++  E    L  L +LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85
          L+ L L++N I  L   L NLP L  L++S NK+++L  
Sbjct: 3  LETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
           IP++I +   +  ++LS NSI+  +PP L S  SL+ L LS N         L  L+SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 431 CLKLDNNPLR-QVPS 444
            L L+ N L  +VP+
Sbjct: 494 ILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +  LDLS N I +LPP LS+  +L+TL LS NKI D  
Sbjct: 3   LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	582
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG4341	483	consensus F-box protein containing LRR [General fu	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.34
PLN03150	623	hypothetical protein; Provisional	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
PLN03150	623	hypothetical protein; Provisional	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.09
KOG4341	483	consensus F-box protein containing LRR [General fu	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
PRK15386	426	type III secretion protein GogB; Provisional	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.85
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.76
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.1
smart00370	26	LRR Leucine-rich repeats, outliers.	95.08
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.68
KOG4308	478	consensus LRR-containing protein [Function unknown	94.57
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.54
KOG4308	478	consensus LRR-containing protein [Function unknown	94.45
smart00370	26	LRR Leucine-rich repeats, outliers.	94.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.52
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.64
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.93
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.32
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.05

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-55  Score=395.61  Aligned_cols=552  Identities=47%  Similarity=0.718  Sum_probs=486.0

Q ss_pred             ChHHHHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCC
Q 007984            1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL   80 (582)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~   80 (582)
                      .++++|+||+-+.+++|++.+..+|..+++..-...+++.||+-..+.++.++++.++.+.+.+.++..+.+|++.+++.
T Consensus         1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l   80 (565)
T KOG0472|consen    1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL   80 (565)
T ss_pred             CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence            36889999999999999999999999999887777889999999999999999999999989999999999999999999


Q ss_pred             cccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCC
Q 007984           81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS  160 (582)
Q Consensus        81 ~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~  160 (582)
                      .++|.+++.+..++.++.++|++..+|..+..+.+|.+++++++.+.+++..++.+..++.++...|++..+|.++..+.
T Consensus        81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~  160 (565)
T KOG0472|consen   81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS  160 (565)
T ss_pred             hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  240 (582)
                      ++..+++.+|.+...++..+. ++.|++++...|.++.+|..++.+.+|..|++..|.+..+| .|.+|..|++++++.|
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence            999999999999999888666 99999999999999999999999999999999999999998 8999999999999999


Q ss_pred             cCcccchhhh-ccCCCcEEEcccCcccccchhhhccc-ccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcccccccc
Q 007984          241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (582)
Q Consensus       241 ~i~~l~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  318 (582)
                      .|..+|++.. .++.+..||+..|+++++|+..+..+ ++.+|+++|.++.+|..++++ +|+.|.+.||++..+++...
T Consensus       239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            9999988765 89999999999999999999988877 999999999999999999999 99999999999999999999


Q ss_pred             CCCcHHHHHHHHhcCCCCCccccccchhhH------HhhhhcccccccEEEecCCCCccCChhhhccCC---ccEEEcCC
Q 007984          319 NGPTPALLKYLRSRLPENEDSEASTTKEDL------ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR  389 (582)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~---L~~L~l~~  389 (582)
                      ..++.+.+++....+...............      .........+.+.++.++-+++.+|...|....   .+..+++.
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence            999999999998855443322111111111      111222234667889999999999999887554   88999999


Q ss_pred             CcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCC
Q 007984          390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (582)
Q Consensus       390 ~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  469 (582)
                      |++..+|..+..+..+.+.-+..++..++.+..++.+++|..|++++|.+.+++.+ +..+-.|+.+|++.|.|-..   
T Consensus       398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l---  473 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML---  473 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc---
Confidence            99999999887777766555555666677778889999999999999999999877 66777899999998855322   


Q ss_pred             CCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCcCCCcccccccccce
Q 007984          470 PFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQA  548 (582)
Q Consensus       470 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~  548 (582)
                                          |..+.....++.+-.++|++..++.. +.+|.+|..||+.+|.+..+|+.+.. +.+|++
T Consensus       474 --------------------P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgn-mtnL~h  532 (565)
T KOG0472|consen  474 --------------------PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGN-MTNLRH  532 (565)
T ss_pred             --------------------hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcc-ccceeE
Confidence                                33334445567777788899988654 89999999999999999999997665 499999


Q ss_pred             eeccCCCCCcchHHHhccchHHHHHHHHhcCC
Q 007984          549 LRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP  580 (582)
Q Consensus       549 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (582)
                      |+++||++.-.+..++-..+.+++.|+++.+|
T Consensus       533 LeL~gNpfr~Pr~~iLmkgT~aiL~ylrdrIp  564 (565)
T KOG0472|consen  533 LELDGNPFRQPRHQILMKGTAAILSYLRDRIP  564 (565)
T ss_pred             EEecCCccCCCHHHHhccChHHHHHHhcccCC
Confidence            99999999988889999999999999999998

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-45  Score=405.60  Aligned_cols=499  Identities=29%  Similarity=0.368  Sum_probs=413.1

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCcc-chhHh-hcCCCCCcEEEcCCCCCcc-cch
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLSE-LPA   85 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~~~~~-~~~~~~L~~L~L~~~~~~~-l~~   85 (582)
                      ..+..|+++++.+.......+.            .+++|+.|++++|.+. .+|.. +..+++|++|++++|.+.. +|.
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~------------~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIF------------RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             CcEEEEEecCCCccccCChHHh------------CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence            4678899998887743333322            3788999999999887 67765 4589999999999998873 433


Q ss_pred             hhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCCCC
Q 007984           86 AIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM  162 (582)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L  162 (582)
                        ..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|
T Consensus       137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence              46889999999999887 67888999999999999999876 67888899999999999999887 678889999999


Q ss_pred             cEEEccCCcccccchhhhcccccCcEEEccCCccC-ccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCC
Q 007984          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~  240 (582)
                      ++|++++|++....+..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            99999999988666666899999999999999885 57788999999999999999887 56788889999999999999


Q ss_pred             cCc-ccchhhhccCCCcEEEcccCcccccchhh--hcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCcccccc
Q 007984          241 ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSS  316 (582)
Q Consensus       241 ~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~  316 (582)
                      .+. .+|..+..+++|+.|++++|.+....+..  ...+|+.+++++|.+.+ +|..+..+++|+.+++++|.+......
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            988 67888899999999999999887543322  23459999999998875 777788999999999999987532111


Q ss_pred             ccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc-cCChhhhccCCccEEEcCCCcCCc-
Q 007984          317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-  394 (582)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-  394 (582)
                      .                                   ......++.+++.++.+. .+|..+..+++|+.|++++|.++. 
T Consensus       375 ~-----------------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        375 G-----------------------------------LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             h-----------------------------------HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            0                                   111245788888888876 677788889999999999998875 


Q ss_pred             CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCC
Q 007984          395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL  474 (582)
Q Consensus       395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  474 (582)
                      +|..+..+++|+.|++++|.+++.....+..+++|+.|++++|.+....+..+ ..++|+.|++++|.+++..+..+..+
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence            77788899999999999999988777777889999999999999876554433 46889999999999988888889999


Q ss_pred             ccchhhhh-ccccc-cCchhhhccCCCCEEecCCCcCC-ccchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceee
Q 007984          475 PHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALR  550 (582)
Q Consensus       475 ~~L~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~  550 (582)
                      ++|++|++ .+.+. .+|..+..+++|+.|++++|.++ .+|..+.++++|++|++++|+++ .+|..+.. +++|+.++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~  577 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVN  577 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc-CcccCEEe
Confidence            99999999 55554 67788899999999999999998 56788999999999999999988 56665554 48999999


Q ss_pred             ccCCCCCc
Q 007984          551 LDGNPLRS  558 (582)
Q Consensus       551 l~~~~~~~  558 (582)
                      +++|++..
T Consensus       578 ls~N~l~~  585 (968)
T PLN00113        578 ISHNHLHG  585 (968)
T ss_pred             ccCCccee
Confidence            99998753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-43  Score=394.52  Aligned_cols=485  Identities=29%  Similarity=0.377  Sum_probs=412.6

Q ss_pred             ccCccEEEcCCCCcc-chhHhhcCCCCCcEEEcCCCCCc-ccchhh-hCCCCCcEEecCCCcCc-cCChhhhccCCccEE
Q 007984           44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF  119 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~-~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L  119 (582)
                      ..+++.|+++++.++ .++..|..+++|++|++++|.+. .+|..+ ..+.+|++|++++|.+. .+|.  ..+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            357999999999887 45678999999999999999987 677755 58999999999999887 4453  468999999


Q ss_pred             EccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccC
Q 007984          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (582)
Q Consensus       120 ~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (582)
                      ++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+....+..++.+++|++|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            99999987 67888999999999999999886 77888999999999999999988766667999999999999999886


Q ss_pred             -ccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccccchh-h-
Q 007984          198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-A-  272 (582)
Q Consensus       198 -~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~-~-  272 (582)
                       .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+. . 
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence             67888999999999999999987 67888999999999999999987 6788999999999999999998754333 2 


Q ss_pred             hcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhh
Q 007984          273 CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (582)
Q Consensus       273 ~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (582)
                      ...+|+.+++++|.+.+ ++..+..+++|+.|++++|.+.....                                   .
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-----------------------------------~  350 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-----------------------------------K  350 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-----------------------------------h
Confidence            23459999999998876 66678899999999999998752210                                   0


Q ss_pred             hhcccccccEEEecCCCCc-cCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCC
Q 007984          352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (582)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L  429 (582)
                      .......++.+++.+|.+. .+|..+...++|+.+++++|.+.. +|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus       351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  430 (968)
T PLN00113        351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV  430 (968)
T ss_pred             HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence            1112356889999999886 678888888999999999999875 77788999999999999999988777778999999


Q ss_pred             CEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccc-cCchhhhccCCCCEEecCCC
Q 007984          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQN  507 (582)
Q Consensus       430 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~  507 (582)
                      +.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++ .+.+. ..+..+..+++|+.|++++|
T Consensus       431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  509 (968)
T PLN00113        431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN  509 (968)
T ss_pred             CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence            999999999998777767889999999999999887665544 4689999999 55554 56778889999999999999


Q ss_pred             cCC-ccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhcc
Q 007984          508 SLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR  566 (582)
Q Consensus       508 ~l~-~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  566 (582)
                      .+. .+|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++...-+..+..
T Consensus       510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  569 (968)
T PLN00113        510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN  569 (968)
T ss_pred             cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence            998 67888999999999999999999766655666699999999999997554444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.5e-41  Score=303.84  Aligned_cols=460  Identities=29%  Similarity=0.418  Sum_probs=372.5

Q ss_pred             HHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccc
Q 007984            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (582)
Q Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~   84 (582)
                      ++....+-+++.+.+.+...|..+..             ...++.++++++++.++|+.+.....++.++.+++.+..++
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~  130 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP  130 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence            34445667788888888888887755             56788899999999999999999999999999999999999


Q ss_pred             hhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcE
Q 007984           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (582)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~  164 (582)
                      +.++.+..|+.++..+|.+.++|.++.++.+|..+++.++.+..+|...-+++.|++|+...|.++.+|+.++.+.+|+.
T Consensus       131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~  210 (565)
T KOG0472|consen  131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL  210 (565)
T ss_pred             chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence            99999999999999999999999999999999999999999998888777799999999999999999999999999999


Q ss_pred             EEccCCcccccchhhhcccccCcEEEccCCccCccchhhc-CCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG-SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      |++..|++..++.  |.+|..|.+++++.|.++.+|+... .++++..||+.+|+++.+|..+..+++|+.|++++|.|+
T Consensus       211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  211 LYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             HHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence            9999999998884  9999999999999999999997765 789999999999999999999999999999999999999


Q ss_pred             ccchhhhccCCCcEEEcccCcccccchhhhccc----ccEEEc--cCCCCC--------C------CCccccCCCCCCeE
Q 007984          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL--SNNSLS--------G------LPPEIGKMTTLRKL  303 (582)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----L~~l~l--~~~~l~--------~------~~~~l~~~~~L~~L  303 (582)
                      .+|..++++ .|+.|.+.+|.+..+........    ++++.=  ....++        .      ..+......+.+.|
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL  367 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL  367 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence            999999999 99999999998876654433221    333321  000110        0      01112234456667


Q ss_pred             EccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCc-
Q 007984          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI-  382 (582)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L-  382 (582)
                      ++++-+++.++...|....                                 ..-+..++++++++.++|..+.....+ 
T Consensus       368 ~~s~~qlt~VPdEVfea~~---------------------------------~~~Vt~VnfskNqL~elPk~L~~lkelv  414 (565)
T KOG0472|consen  368 DVSDKQLTLVPDEVFEAAK---------------------------------SEIVTSVNFSKNQLCELPKRLVELKELV  414 (565)
T ss_pred             cccccccccCCHHHHHHhh---------------------------------hcceEEEecccchHhhhhhhhHHHHHHH
Confidence            7777766666544443211                                 123568899999999999888765554 


Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      +.+.++.+.+.-+|..+..+++|+-|++++|-+.+++.+ ++.+..|+.++++.|++..++.. +.....|+.+-.++|+
T Consensus       415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQ  492 (565)
T ss_pred             HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHH-HhhHHHHHHHHhcccc
Confidence            456677777777888889999999999999999999877 57888899999999998887753 4445556666666666


Q ss_pred             CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984          463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  538 (582)
Q Consensus       463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~  538 (582)
                      +..+.+                      .++.++..|.+||+.+|++..+|..+++|++|++|.+.||.++ .|..
T Consensus       493 i~~vd~----------------------~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  493 IGSVDP----------------------SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             ccccCh----------------------HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence            655432                      3477889999999999999999999999999999999999888 5553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-37  Score=287.84  Aligned_cols=400  Identities=25%  Similarity=0.341  Sum_probs=258.0

Q ss_pred             cEEecCCCcCccCCh-hhhcc--CCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccC
Q 007984           94 KSLDVSFNSIMKIPD-EIGSA--TALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (582)
Q Consensus        94 ~~L~l~~~~~~~l~~-~~~~~--~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~  169 (582)
                      ..|+.++..+..+.. .+.+.  ..-+.|++++|.+..+ +..|.++++|+++++..|.+..||..-....+|+.|++.+
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH  134 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence            345555555544311 12222  1234577888777755 3456778888888888888888887777777888888888


Q ss_pred             CcccccchhhhcccccCcEEEccCCccCccch-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccc-
Q 007984          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-  246 (582)
Q Consensus       170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~-  246 (582)
                      |.|..+....++.++.|++|+++.|.+.+++. ++..-.++++|++++|.++.+ ...|..+.+|.+|.|+.|.++.+| 
T Consensus       135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~  214 (873)
T KOG4194|consen  135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ  214 (873)
T ss_pred             cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence            88888888888888888888888888887763 555667888999998888865 456778888888888888888775 


Q ss_pred             hhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHH
Q 007984          247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL  326 (582)
Q Consensus       247 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  326 (582)
                      ..|.++++|+.|++..|.+..+...                     .|.++++|+.+.+..|.+..+..+.|        
T Consensus       215 r~Fk~L~~L~~LdLnrN~irive~l---------------------tFqgL~Sl~nlklqrN~I~kL~DG~F--------  265 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRNRIRIVEGL---------------------TFQGLPSLQNLKLQRNDISKLDDGAF--------  265 (873)
T ss_pred             HHhhhcchhhhhhccccceeeehhh---------------------hhcCchhhhhhhhhhcCcccccCcce--------
Confidence            4566788888888888877654222                     24455555555555555443322222        


Q ss_pred             HHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCC
Q 007984          327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASL  405 (582)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L  405 (582)
                                                                        +.+.+++.|+++.|++..+.. ++.++++|
T Consensus       266 --------------------------------------------------y~l~kme~l~L~~N~l~~vn~g~lfgLt~L  295 (873)
T KOG4194|consen  266 --------------------------------------------------YGLEKMEHLNLETNRLQAVNEGWLFGLTSL  295 (873)
T ss_pred             --------------------------------------------------eeecccceeecccchhhhhhcccccccchh
Confidence                                                              223444555555555544433 34455555


Q ss_pred             CEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-cc
Q 007984          406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RM  484 (582)
Q Consensus       406 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~  484 (582)
                      ++|+++.|.|..+.....+.+++|+.|+++.|+++.+.+.+|..+++|+.|.|+.|.++.+...+|.++.+|++|++ .+
T Consensus       296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            55555555555544444455555555555555555555555555555555555555555555555555555555555 22


Q ss_pred             ccc----cCchhhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcc
Q 007984          485 QLR----EAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI  559 (582)
Q Consensus       485 ~~~----~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~  559 (582)
                      .+.    +....+..+++|+.|++.+|++.++| .+|.+++.|+.|+|.+|.|.++.+++|.. -.|++|.++.-++.  
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~-m~Lk~Lv~nSssfl--  452 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP-MELKELVMNSSSFL--  452 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc-chhhhhhhcccceE--
Confidence            221    22234556788888888888888887 45888888888888888888888888877 48888887665544  


Q ss_pred             hHHHhccchHHHHHHHHhcC
Q 007984          560 RRTILDRGTKAVLKYLKDKI  579 (582)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~  579 (582)
                          ++...+=...|+.++.
T Consensus       453 ----CDCql~Wl~qWl~~~~  468 (873)
T KOG4194|consen  453 ----CDCQLKWLAQWLYRRK  468 (873)
T ss_pred             ----EeccHHHHHHHHHhcc
Confidence                3555666666666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-36  Score=283.69  Aligned_cols=377  Identities=25%  Similarity=0.348  Sum_probs=243.3

Q ss_pred             ccEEEcCCCCccchh-HhhcC--CCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984           47 LQKLILAHNNIEKLK-EDLRN--LPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (582)
Q Consensus        47 l~~L~l~~~~i~~~~-~~~~~--~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (582)
                      -+-|+.++..++.+. ..+..  .+.-+.|++++|.+.++ +..|.++++|+.+.+..|.+..+|....-..+|++|++.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            345666666555442 12221  12344567777666654 345666677777777766666666655555567777777


Q ss_pred             CCcCCcCC-cccccCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984          123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       123 ~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (582)
                      .|.++.+. ..+..++.|++||++.|.+..++.. |..-.++++|++.+|+|+.++.+.|.++.+|..|.++.|.++.+|
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            66666553 3555666677777777766666543 555566777777777777777777777777777777777777666


Q ss_pred             h-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccc-hhhhccCCCcEEEcccCcccccchhhh--cc
Q 007984          201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEAC--QL  275 (582)
Q Consensus       201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~  275 (582)
                      . .|..++.|+.|++..|.+..+ ...|.++++|+.|.+..|.|..+. ..|..+.++++|++..|++..+.....  ..
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            3 455577777777777766644 345667777777777777776553 345566777777777777665544322  22


Q ss_pred             cccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhc
Q 007984          276 RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR  354 (582)
Q Consensus       276 ~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (582)
                      +|+.|+++.|.+..+ +..+..+++|++|+++.|.++.+...                                      
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~--------------------------------------  335 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG--------------------------------------  335 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChh--------------------------------------
Confidence            377777777776664 34467777888888887776544322                                      


Q ss_pred             ccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCC---CChHHhhCCCCCC
Q 007984          355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD---WPDAILTSLSSLS  430 (582)
Q Consensus       355 ~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~---~~~~~l~~l~~L~  430 (582)
                                          .+..+..|++|++++|.+..+.+ .|..+.+|++||++.|.+..   .....|.++++|+
T Consensus       336 --------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  336 --------------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             --------------------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence                                22224566777777777766654 46667777777777776543   2334466777777


Q ss_pred             EeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984          431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (582)
Q Consensus       431 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  482 (582)
                      .|++.+|++..|+..+|.++++|++|||.+|-+-++.+.+|..+ .|++|.+
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            77777777777777777777777777777777777777777777 7777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-37  Score=306.88  Aligned_cols=476  Identities=27%  Similarity=0.339  Sum_probs=317.4

Q ss_pred             ceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCCC
Q 007984           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH   91 (582)
Q Consensus        13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~   91 (582)
                      ++|.+..+++-||..++.+             ..+..|+++.|.+-..| +.+.+.-+|+.|+|+++.+...|..+..++
T Consensus         2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~   68 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS   68 (1081)
T ss_pred             CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence            5788888999999988763             45888999988766544 345556669999999999999999999999


Q ss_pred             CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCC-
Q 007984           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-  170 (582)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~-  170 (582)
                      +|+.|++++|.|..+|.++.++.+|+++++.+|....+|..+..+++|+.|+++.|.+..+|..+..+..++++..++| 
T Consensus        69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             cccccchhhhcccccCcEEEccCCccC-ccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhh
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l  249 (582)
                      .+..++     ... ++.+++..+.+. .++..+..+.+  .|++++|.+.  ...+..+.+|+.|....+.+..+..  
T Consensus       149 ~~~~lg-----~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~--  216 (1081)
T KOG0618|consen  149 KIQRLG-----QTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI--  216 (1081)
T ss_pred             hhhhhc-----ccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe--
Confidence            222222     222 777777777663 34434433334  5999999887  3457788899999998888885522  


Q ss_pred             hccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHH
Q 007984          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (582)
Q Consensus       250 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (582)
                       .-++++.|+.++|.+........+..+++++++++.+..+|.....+.+++.++...|.+..++...+.......+...
T Consensus       217 -~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  217 -SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             -cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence             3479999999999999777777777799999999999999988899999999999999886554433332211111111


Q ss_pred             HhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhcc--CCccEEEcCCCcCCcCCcc-ccCCCCCC
Q 007984          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE-LSSCASLQ  406 (582)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~--~~L~~L~l~~~~l~~l~~~-l~~~~~L~  406 (582)
                      ...+...             ........+++++++..+.+..+|..++..  ..++.++.+.+.+...|.. =...+.|+
T Consensus       296 ~nel~yi-------------p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  296 YNELEYI-------------PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhhhhC-------------CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence            1000000             000111123444444444444444433321  1134444444444443321 12234455


Q ss_pred             EEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccc
Q 007984          407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQ  485 (582)
Q Consensus       407 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~  485 (582)
                      .|++.+|.+++-....+.+.++|+.|++++|++..+++..+.+++.|++|++|||+++.+. .....++.|++|.. .++
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence            5555666665554455555666666666666666665555556666666666666555543 34455555555555 333


Q ss_pred             cccCchhhhccCCCCEEecCCCcCCc--cchhhcCCCCCCEEeCCCC
Q 007984          486 LREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDN  530 (582)
Q Consensus       486 ~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n  530 (582)
                      +...| .+..+++|+.+|++.|+++.  +|+.... ++|++||++||
T Consensus       442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN  486 (1081)
T KOG0618|consen  442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN  486 (1081)
T ss_pred             eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence            33444 44555555555555555542  2222211 45555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-36  Score=296.94  Aligned_cols=461  Identities=27%  Similarity=0.347  Sum_probs=316.9

Q ss_pred             HHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch
Q 007984            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (582)
Q Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~   85 (582)
                      +++-++++||++++.+..+|..+-.             ..+|+.|+++.+-|.++|....++.+|+++.|.++.+..+|.
T Consensus        42 ~~~v~L~~l~lsnn~~~~fp~~it~-------------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~  108 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQISSFPIQITL-------------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPA  108 (1081)
T ss_pred             hheeeeEEeeccccccccCCchhhh-------------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCch
Confidence            3344455555555555555554432             344555555555555555555555555555555555555555


Q ss_pred             hhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC-cCCcCCcccccCCCCCeEEcCCCcCC-CCccccccCCCCc
Q 007984           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS  163 (582)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~  163 (582)
                      .+..+.+|++|+++.|.+..+|..+..++.++.+..++| ++..++..     .++.+++..+.+. .++.+...+.+  
T Consensus       109 ~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~ik~~~l~~n~l~~~~~~~i~~l~~--  181 (1081)
T KOG0618|consen  109 SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----SIKKLDLRLNVLGGSFLIDIYNLTH--  181 (1081)
T ss_pred             hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----cchhhhhhhhhcccchhcchhhhhe--
Confidence            555555555555555555555555555555555555555 11122211     1455555555444 34444454555  


Q ss_pred             EEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      .|++.+|++...+   +..+.+|+.+....+.+..+..   ..++|+.|+.+.|.++... ......+|++++++.+.+.
T Consensus       182 ~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~  254 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELEI---SGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS  254 (1081)
T ss_pred             eeecccchhhhhh---hhhccchhhhhhhhcccceEEe---cCcchheeeeccCcceeec-cccccccceeeecchhhhh
Confidence            6888888877222   6778888888888887766532   3478889999998877432 2233578999999999999


Q ss_pred             ccchhhhccCCCcEEEcccCcccccchhhhccc-ccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCc
Q 007984          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (582)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (582)
                      .+|.|+..+.+|+.++..+|.+..++....... ++.+.+..|.+..+|+..++...|++|++..|.+...+...+....
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~  334 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLN  334 (1081)
T ss_pred             cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhh
Confidence            999999999999999999999988877665544 8999999999999999899999999999999998776543322110


Q ss_pred             HHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhh-ccCCccEEEcCCCcCCc-CCcccc
Q 007984          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LPPELS  400 (582)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~-l~~~l~  400 (582)
                                                        ..+..+..+.+.+...|..-. ..+.|+.|.+.+|.+++ +-..+.
T Consensus       335 ----------------------------------~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  335 ----------------------------------ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             ----------------------------------HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence                                              111222233333444442222 25679999999999987 334678


Q ss_pred             CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhh
Q 007984          401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL  480 (582)
Q Consensus       401 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  480 (582)
                      +.+.|++|++++|++..++...+.+++.|++|+++||.++.++. ....+..|+.|...+|.+....  .+..++.|+.+
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~l  457 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVL  457 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCceeech--hhhhcCcceEE
Confidence            88999999999999999999999999999999999999999984 4899999999999999998775  58899999999


Q ss_pred             hh-ccccccCchhhh-ccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCC
Q 007984          481 YL-RMQLREAPTDIL-RLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDN  530 (582)
Q Consensus       481 ~l-~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n  530 (582)
                      ++ ++++..+.-... ..+.|+.||++||.-..+. ..|..+..+...++.-+
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99 776664422221 2289999999999644332 34666677777777666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-33  Score=267.49  Aligned_cols=379  Identities=28%  Similarity=0.415  Sum_probs=318.4

Q ss_pred             hhcCceecCCCCCC--CcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchh
Q 007984            9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~   86 (582)
                      +-.+-+|++++.+.  .+|.++.+             +..++.|.|....+.++|+.++.+++|++|.+.+|++.++-.-
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE   73 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE   73 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence            34567899999876  89998876             7899999999999999999999999999999999999888778


Q ss_pred             hhCCCCCcEEecCCCcCc--cCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccc-cccCCCCc
Q 007984           87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS  163 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~  163 (582)
                      ++.++.|+.+.+++|++.  .+|..+..+..|..|++|.|++...|..+.+-+++-.|++++|++..||.. |.+++.|-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            889999999999999887  689999999999999999999999999999999999999999999999876 67888999


Q ss_pred             EEEccCCcccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEEEcCCC
Q 007984          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~  240 (582)
                      .|++++|++..+++. +..+.+|++|.+++|.+.... ..+..+.+|+.|.+++++-+  .+|..+..+.+|..++++.|
T Consensus       154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            999999999999888 889999999999999886432 34456778889999998755  78999999999999999999


Q ss_pred             cCcccchhhhccCCCcEEEcccCcccccchhhhc-ccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccC
Q 007984          241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN  319 (582)
Q Consensus       241 ~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  319 (582)
                      .+..+|..+..+++|+.|++++|+++++...... .++++|++++|.++.+|.++..+++|+.|.+.+|++.        
T Consensus       233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~--------  304 (1255)
T KOG0444|consen  233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT--------  304 (1255)
T ss_pred             CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence            9999999999999999999999999987665433 3489999999999999999999999999999888762        


Q ss_pred             CCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccc
Q 007984          320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL  399 (582)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l  399 (582)
                                                                       +..+|+.++.+.+|+.+..++|.+.-+|+.+
T Consensus       305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl  335 (1255)
T KOG0444|consen  305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL  335 (1255)
T ss_pred             -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence                                                             2467778888888888888888888888888


Q ss_pred             cCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCC
Q 007984          400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (582)
Q Consensus       400 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  459 (582)
                      ..|+.|+.|.++.|++..++.. +--++.|+.|++..|+-..+++..-..-++|+.-+++
T Consensus       336 cRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             hhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            8888888888888887777643 5678888888888876554444322222345444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-32  Score=260.71  Aligned_cols=358  Identities=25%  Similarity=0.375  Sum_probs=298.9

Q ss_pred             cCccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (582)
Q Consensus        45 ~~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (582)
                      +=+|-+++++|.++  .+|.....+++++.|.|...++..+|+-++.+.+|++|.+.+|.+.++...+..++.|+.+.++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence            44688899999887  6788899999999999999999999999999999999999999999888888899999999999


Q ss_pred             CCcCC--cCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984          123 SNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       123 ~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (582)
                      .|++.  .+|..+.++..|..|+++.|++.+.|..+..-+++-.|++++|+|..|+...|.++..|-.|+++.|.++.+|
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP  166 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP  166 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence            99887  7888999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             hhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCc--ccchhhhccCCCcEEEcccCcccccchhhhcccc
Q 007984          201 ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (582)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~--~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L  277 (582)
                      ..+..+..|++|++++|.+... ...+..+++|++|.+++.+-+  .+|..+..+.+|+.++++.|.             
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-------------  233 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-------------  233 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------------
Confidence            8888888999999998876632 234555667777777776544  666666666666666666554             


Q ss_pred             cEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccc
Q 007984          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV  357 (582)
Q Consensus       278 ~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (582)
                               +..+|..+..+++|+.|++++|.++.+.-..      ..+                              .
T Consensus       234 ---------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------~~W------------------------------~  268 (1255)
T KOG0444|consen  234 ---------LPIVPECLYKLRNLRRLNLSGNKITELNMTE------GEW------------------------------E  268 (1255)
T ss_pred             ---------CCcchHHHhhhhhhheeccCcCceeeeeccH------HHH------------------------------h
Confidence                     4456667777888888888888876543110      000                              2


Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcC--CcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI--QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l--~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (582)
                      +++.++++.++++.+|..+..++.|+.|.+.+|++  ..+|..++++.+|+++..++|.+.-++. .+++|++|+.|.++
T Consensus       269 ~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE-glcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  269 NLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE-GLCRCVKLQKLKLD  347 (1255)
T ss_pred             hhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch-hhhhhHHHHHhccc
Confidence            45778888888899999999999999999999975  4699999999999999999998876654 58999999999999


Q ss_pred             CCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          436 NNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      +|++..++. ++.-++.|+.||+..|.
T Consensus       348 ~NrLiTLPe-aIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  348 HNRLITLPE-AIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccceeechh-hhhhcCCcceeeccCCc
Confidence            999988875 48889999999999883

>PLN03210 Resistant to P

Probab=99.89  E-value=2.3e-21  Score=215.92  Aligned_cols=304  Identities=24%  Similarity=0.311  Sum_probs=166.8

Q ss_pred             CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCc-CccCCcCCcCCCCCcEEEcCC
Q 007984          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGN  239 (582)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~  239 (582)
                      +|+.|.+.++.+..++.. + ...+|++|++.++.+..++..+..+++|+.|+++++. +..+| .+..+++|+.|++++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD  666 (1153)
T ss_pred             ccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence            355555555544444432 2 2345555555555555444444445555555555443 22333 244455555555555


Q ss_pred             Cc-CcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcccccccc
Q 007984          240 NA-LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (582)
Q Consensus       240 ~~-i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  318 (582)
                      |. +..+|..+..+++|+.|++++|.                     .+..+|... .+++|++|++++|.....     
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~---------------------~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~-----  719 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCE---------------------NLEILPTGI-NLKSLYRLNLSGCSRLKS-----  719 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCC---------------------CcCccCCcC-CCCCCCEEeCCCCCCccc-----
Confidence            43 23445555555555555555432                     222333322 455566666655532000     


Q ss_pred             CCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC--
Q 007984          319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--  396 (582)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--  396 (582)
                                                       ......+++.+++.++.+..+|..+ .+++|++|.+.++....+.  
T Consensus       720 ---------------------------------~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        720 ---------------------------------FPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             ---------------------------------cccccCCcCeeecCCCccccccccc-cccccccccccccchhhcccc
Confidence                                             0001123455566666656666544 4677888888765432221  


Q ss_pred             -----c-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC-CccCCCccccCCCCCcEEeCCCCcCCCCCCC
Q 007984          397 -----P-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (582)
Q Consensus       397 -----~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  469 (582)
                           . ....+++|+.|++++|......+..++++++|+.|++++|. +..++.. . .+++|+.|++++|......+ 
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p-  842 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP-  842 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc-
Confidence                 1 22345788999998885443333457889999999998874 5555543 2 67889999998874322211 


Q ss_pred             CCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCC-cCCccchhhcCCCCCCEEeCCCC-cCC
Q 007984          470 PFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQN-SLQSIPEGFKNLTSLTELDLSDN-NIS  533 (582)
Q Consensus       470 ~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~n-~l~  533 (582)
                        ...++|+.|++ .+.+..+|..+..+++|+.|++++| +++.+|..+..+++|+.+++++| .++
T Consensus       843 --~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        843 --DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             --ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence              12345666666 5556666666667777777777765 56666655666677777777777 344

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=4.9e-21  Score=213.41  Aligned_cols=323  Identities=24%  Similarity=0.274  Sum_probs=198.0

Q ss_pred             cccCccEEEcCCCCc-------cchhHhhcCCC-CCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccC
Q 007984           43 EAVDLQKLILAHNNI-------EKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT  114 (582)
Q Consensus        43 ~~~~l~~L~l~~~~i-------~~~~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~  114 (582)
                      .+.+|+.|.+..+..       ..+|+.|..++ .|+.|.+.++.+..+|..+ ...+|+.|+++++.+..++..+..++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~  634 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT  634 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence            366677776654321       13444454443 4777777777777666665 35677777777777776666666677


Q ss_pred             CccEEEccCCc-CCcCCcccccCCCCCeEEcCCCc-CCCCccccccCCCCcEEEccCC-cccccchhhhcccccCcEEEc
Q 007984          115 ALVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIA  191 (582)
Q Consensus       115 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~~~-~~~i~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l  191 (582)
                      +|+.|+++++. +..+| .+..+++|++|++++|. +..+|..+..+++|+.|++++| .++.++..  .++++|+.|++
T Consensus       635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~L  711 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNL  711 (1153)
T ss_pred             CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeC
Confidence            77777776654 34554 35566777777777663 4466666777777777777665 34455443  15667777777


Q ss_pred             cCCcc-CccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccc--------hhhhccCCCcEEEccc
Q 007984          192 SKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--------AELGKLSKLGTLDLHS  262 (582)
Q Consensus       192 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~--------~~l~~~~~L~~L~l~~  262 (582)
                      ++|.. ..+|..   ..+|+.|+++++.+..+|..+ .+++|+.|.+.++....+.        ......++|+.|++++
T Consensus       712 sgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~  787 (1153)
T PLN03210        712 SGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD  787 (1153)
T ss_pred             CCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence            77643 333321   346777777777766666544 4566666666554322111        1122345677777776


Q ss_pred             Cc-ccccchhhh-cccccEEEccCC-CCCCCCccccCCCCCCeEEccCCCCc-cccccccCCCcHHHHHHHHhcCCCCCc
Q 007984          263 NQ-LKEYCVEAC-QLRLSVLDLSNN-SLSGLPPEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENED  338 (582)
Q Consensus       263 ~~-~~~~~~~~~-~~~L~~l~l~~~-~l~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (582)
                      |. +..++.... ..+|+.|++++| .+..+|... .+++|++|++++|..- .+                         
T Consensus       788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~-------------------------  841 (1153)
T PLN03210        788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF-------------------------  841 (1153)
T ss_pred             CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-------------------------
Confidence            64 333443322 223777777776 344455544 5778888888876421 10                         


Q ss_pred             cccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCC-cCCcCCccccCCCCCCEEEcccC
Q 007984          339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN  413 (582)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~~  413 (582)
                                    .....+++.+++.++.+..+|.++..+++|+.|++++| .+..+|.....+++|+.+++++|
T Consensus       842 --------------p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        842 --------------PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             --------------cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence                          01123567777777777788888878888888888875 46667766777788888888777

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=4.1e-24  Score=193.61  Aligned_cols=145  Identities=23%  Similarity=0.339  Sum_probs=123.1

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~~   89 (582)
                      ...++++..+++||.++               .+...+|+|..|.|+.+|+ +|+.+++||.|||++|.|+.| |++|..
T Consensus        49 ~~VdCr~~GL~eVP~~L---------------P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANL---------------PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             ceEEccCCCcccCcccC---------------CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            56889999999999988               6788999999999999985 899999999999999999977 779999


Q ss_pred             CCCCcEEecCC-CcCccCChh-hhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEE
Q 007984           90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~-~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L  165 (582)
                      ++.|..|-+-+ |+|+.+|.. |+++..|+.|.+.-|.+..++ ..+..++++..|.+.+|.+..++. .|..+..++.+
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            99988877765 899999765 888999999999888887554 477889999999999998888876 57777777777


Q ss_pred             EccCCc
Q 007984          166 DVEGNK  171 (582)
Q Consensus       166 ~l~~~~  171 (582)
                      .+..+.
T Consensus       194 hlA~np  199 (498)
T KOG4237|consen  194 HLAQNP  199 (498)
T ss_pred             hhhcCc
Confidence            765554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=8.7e-21  Score=195.85  Aligned_cols=259  Identities=30%  Similarity=0.377  Sum_probs=217.7

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~   88 (582)
                      .+-..|+++++.++.+|..+               .++++.|++..|.++.+|..   .++|++|++++|.++.+|..  
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l---------------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--  260 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL---------------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--  260 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch---------------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--
Confidence            34567999999999999877               34799999999999988753   58999999999999988753  


Q ss_pred             CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~  168 (582)
                       .++|+.|++++|.+..+|..   ..+|+.|++++|+++.+|..   .++|+.|++++|.+..+|..   ..+|+.|+++
T Consensus       261 -p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls  330 (788)
T PRK15387        261 -PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAY  330 (788)
T ss_pred             -ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccc
Confidence             46899999999999888763   35788999999999988763   47899999999999988753   2468889999


Q ss_pred             CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (582)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~  248 (582)
                      +|.++.++.    ...+|+.|++++|.+..+|..   .++|+.|++++|.+..+|..   ..+|+.|++++|.+..+|..
T Consensus       331 ~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l  400 (788)
T PRK15387        331 NNQLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL  400 (788)
T ss_pred             cCccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc
Confidence            999987764    225899999999999988753   36789999999999988754   35799999999999988754


Q ss_pred             hhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (582)
Q Consensus       249 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~  312 (582)
                         .++|+.|++++|.+..++..  ...++.|++++|.++.+|..+..+++++.+++++|+++.
T Consensus       401 ---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        401 ---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence               36899999999999987753  346889999999999999999999999999999999853

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=3e-20  Score=191.85  Aligned_cols=41  Identities=24%  Similarity=0.304  Sum_probs=24.4

Q ss_pred             CccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChH
Q 007984          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA  421 (582)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~  421 (582)
                      +|+.|++++|.++.+|..+..+++|+.|++++|.+++....
T Consensus       423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence            45556666666666666566666666666666666554433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=2.6e-22  Score=181.96  Aligned_cols=205  Identities=22%  Similarity=0.339  Sum_probs=109.3

Q ss_pred             ccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccC-CcccccchhhhcccccCcEEEcc
Q 007984          116 LVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEG-NKLTVLSNNLIASWTMLTELIAS  192 (582)
Q Consensus       116 L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~  192 (582)
                      -..+.+..|+++.+|. .|+.+++|+.|+++.|.++.| |.+|..+..+.+|-+.+ |+|++++.++|+++..++.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            3445555666665553 555666666666666666644 33466666665555444 66666666666666666666666


Q ss_pred             CCccCccc-hhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCcc---c----------chhhhccCCCcE
Q 007984          193 KNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA---L----------PAELGKLSKLGT  257 (582)
Q Consensus       193 ~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~---l----------~~~l~~~~~L~~  257 (582)
                      -|++..+. ..+..++++..|.+.+|.+..++. .+..+..++++.+..+.+..   +          +-.++...-...
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            66665543 456666666667777766666654 56666666666666555321   1          111111112222


Q ss_pred             EEcccCcccccchhhhcccccEE--Ec-cCCCCCCC-C-ccccCCCCCCeEEccCCCCccccccccCC
Q 007984          258 LDLHSNQLKEYCVEACQLRLSVL--DL-SNNSLSGL-P-PEIGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (582)
Q Consensus       258 L~l~~~~~~~~~~~~~~~~L~~l--~l-~~~~l~~~-~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  320 (582)
                      ..+.+..+..++...+...++.+  .+ +.+....+ | ..|..+++|+++++++|.++.+...+|.+
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            22233333333333333332222  11 12222222 2 13677777777777777777666555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=2.2e-19  Score=186.83  Aligned_cols=246  Identities=25%  Similarity=0.384  Sum_probs=173.4

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~  125 (582)
                      +..+|++++..++.+|..+.  ++|+.|++++|.++.+|..+.  .+|++|++++|.+..+|..+.  .+|+.|++++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            45677777777777665443  467777777777777766443  467777777777777765443  367777777777


Q ss_pred             CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (582)
Q Consensus       126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (582)
                      +..+|..+.  .+|+.|++++|.+..+|..+.  ++|+.|++++|+++.++.. +  .+.|+.|++++|.+..+|..+. 
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~l~-  324 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPETLP-  324 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCcccc-
Confidence            777765543  467777777777777766543  4777778777777766543 1  2467777788887777665443 


Q ss_pred             CCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCC
Q 007984          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (582)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~  285 (582)
                       ++|+.|++++|.++.+|..+.  ++|+.|++++|.+..+|..+.  ++|++|++++|.+..++... ...++.+++++|
T Consensus       325 -~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N  398 (754)
T PRK15370        325 -PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL-PAALQIMQASRN  398 (754)
T ss_pred             -ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccC
Confidence             578888888888887776553  688888888888887776553  68888888888888776653 335888888888


Q ss_pred             CCCCCCcccc----CCCCCCeEEccCCCCc
Q 007984          286 SLSGLPPEIG----KMTTLRKLLLTGNPLR  311 (582)
Q Consensus       286 ~l~~~~~~l~----~~~~L~~L~l~~~~~~  311 (582)
                      .+..+|..+.    ..+.+..+++.+|++.
T Consensus       399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8888766443    3577888999998874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=2.6e-19  Score=186.34  Aligned_cols=246  Identities=26%  Similarity=0.407  Sum_probs=205.7

Q ss_pred             hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhC
Q 007984           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (582)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~   89 (582)
                      ....|++++..++.+|..+               .++++.|++++|.++.+|..+.  .+|+.|++++|.++.+|..+. 
T Consensus       179 ~~~~L~L~~~~LtsLP~~I---------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-  240 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI---------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-  240 (754)
T ss_pred             CceEEEeCCCCcCcCCccc---------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence            4578999999999999866               4579999999999999987654  589999999999999887654 


Q ss_pred             CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccC
Q 007984           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~  169 (582)
                       .+|+.|++++|.+..+|..+.  .+|+.|++++|.+..+|..+.  ++|+.|++++|.+..+|..+.  ++|+.|++++
T Consensus       241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence             479999999999999987764  589999999999998887554  589999999999998876554  5799999999


Q ss_pred             CcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhh
Q 007984          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (582)
Q Consensus       170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l  249 (582)
                      |.+..++..   ..++|+.|++++|.+..+|..+.  ++|+.|++++|.+..+|..+  .++|+.|++++|.+..+|..+
T Consensus       314 N~Lt~LP~~---l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        314 NSLTALPET---LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL  386 (754)
T ss_pred             CccccCCcc---ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence            999877643   23689999999999998887664  79999999999999887655  368999999999999998876


Q ss_pred             hccCCCcEEEcccCcccccchhhhc-----ccccEEEccCCCCCC
Q 007984          250 GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG  289 (582)
Q Consensus       250 ~~~~~L~~L~l~~~~~~~~~~~~~~-----~~L~~l~l~~~~l~~  289 (582)
                      .  ..|+.|++++|++..++.....     ..+..+++.+|.+..
T Consensus       387 ~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        387 P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            5  3799999999999887654321     347889999998763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=1.9e-19  Score=144.54  Aligned_cols=201  Identities=33%  Similarity=0.558  Sum_probs=173.2

Q ss_pred             hhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCc
Q 007984          375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (582)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~  454 (582)
                      .++....++.|.+++|+++.+|..++.+.+|++|++++|.+.+++.. ++++++|+.|++.-|++...+. .|+.++.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr-gfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR-GFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc-ccCCCchhh
Confidence            44567788999999999999999999999999999999999999876 6999999999999888876665 499999999


Q ss_pred             EEeCCCCcCCCC-CCCCCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcC
Q 007984          455 ILDLSYNIASLP-ENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI  532 (582)
Q Consensus       455 ~L~l~~n~l~~~-~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l  532 (582)
                      .||+..|+++.- .+.-|-.+..|+.|++ .+...-+|...+.+++|+.|.+.+|++-++|..+..++.|++|++.||++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            999999988644 3445667889999999 66677788899999999999999999999999999999999999999999


Q ss_pred             CcCCCccccc--ccccceeeccCCCCCcchHHHhccchHHHHHHHHh
Q 007984          533 SALPPELGLL--EPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD  577 (582)
Q Consensus       533 ~~l~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (582)
                      +.+|+.+...  .-+=+.+.+..|++...-++.|.........|++.
T Consensus       186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirt  232 (264)
T KOG0617|consen  186 TVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRT  232 (264)
T ss_pred             eecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhh
Confidence            9999976432  23446688899999988899999888887777764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-18  Score=139.80  Aligned_cols=161  Identities=29%  Similarity=0.455  Sum_probs=115.7

Q ss_pred             ccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEc
Q 007984           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (582)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l  121 (582)
                      +++++++.|.+|++.++.+|..+..+.+|++|+++++++..+|..++.+++|+.|+++-|.+..+|..|+.++.|+.|++
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            34667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCcCC--cCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCcc
Q 007984          122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (582)
Q Consensus       122 ~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (582)
                      .+|.+.  .+|..|..+..|+.|.+++|.+..+|...+.+++|+.|.+..|.+-.++.. ++.+..|++|.+.+|.++.+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence            777766  566667777777777777777777777777777777777777666555443 55666666666666666665


Q ss_pred             chhh
Q 007984          200 PETI  203 (582)
Q Consensus       200 ~~~l  203 (582)
                      |..+
T Consensus       189 ppel  192 (264)
T KOG0617|consen  189 PPEL  192 (264)
T ss_pred             Chhh
Confidence            5433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=6.8e-16  Score=150.02  Aligned_cols=225  Identities=25%  Similarity=0.255  Sum_probs=145.1

Q ss_pred             ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc-------cchhhhCCCCCcEEecCCCcCcc-CChhh
Q 007984           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIMK-IPDEI  110 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~-l~~~~  110 (582)
                      ..++++++++++.++     .++..+...+.++.++++++.+..       ++..+..+++|++|++++|.+.. .+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            566888999888874     355567777888888888876652       23466778888888888887762 33334


Q ss_pred             hcc---CCccEEEccCCcCCc-----CCcccccC-CCCCeEEcCCCcCC-----CCccccccCCCCcEEEccCCcccccc
Q 007984          111 GSA---TALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS  176 (582)
Q Consensus       111 ~~~---~~L~~L~l~~~~~~~-----l~~~~~~~-~~L~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~i~~~~  176 (582)
                      ..+   ++|++|++++|.+..     +...+..+ ++|+.|++++|.+.     .++..+..+++|++|++++|.++...
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            333   348888888887762     22344555 78888888888776     33445667778888888887776321


Q ss_pred             h----hhhcccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCccC-----CcCC-cCCCCCcEEEcCCCc
Q 007984          177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-----PSSI-SGCCSLAEFYMGNNA  241 (582)
Q Consensus       177 ~----~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~-----~~~l-~~~~~L~~L~l~~~~  241 (582)
                      .    ..+...++|++|++++|.+..     +...+..+++|+.|++++|.+...     ...+ ...+.|+.|++.+|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            1    123445677788887776642     233455667777777777766521     1111 124677777777776


Q ss_pred             Cc-----ccchhhhccCCCcEEEcccCccccc
Q 007984          242 LS-----ALPAELGKLSKLGTLDLHSNQLKEY  268 (582)
Q Consensus       242 i~-----~l~~~l~~~~~L~~L~l~~~~~~~~  268 (582)
                      ++     .+...+..+++|+++++++|.++..
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            64     2334455556777777777766643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=5.6e-16  Score=150.60  Aligned_cols=245  Identities=27%  Similarity=0.311  Sum_probs=132.6

Q ss_pred             EEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCcc-------CChhhhccC
Q 007984           49 KLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-------IPDEIGSAT  114 (582)
Q Consensus        49 ~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~~~  114 (582)
                      .|+|..+.++  .....+..+..|++|+++++.++     .++..+...+.++.++++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566666554  34455667777999999988875     345566777888888888776652       223455677


Q ss_pred             CccEEEccCCcCCc-CCcccccC---CCCCeEEcCCCcCCC-----CccccccC-CCCcEEEccCCcccccc----hhhh
Q 007984          115 ALVKFDCSSNQLKE-LPSSLGRC---LNLSDFKASNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLS----NNLI  180 (582)
Q Consensus       115 ~L~~L~l~~~~~~~-l~~~~~~~---~~L~~L~l~~~~~~~-----i~~~l~~~-~~L~~L~l~~~~i~~~~----~~~~  180 (582)
                      +|++|++++|.+.. .+..+..+   ++|++|++++|.+..     +...+..+ ++|+.|++++|.++...    ...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            78888887777652 22223222   337777777776652     22334455 66666666666655211    1123


Q ss_pred             cccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCC
Q 007984          181 ASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL  255 (582)
Q Consensus       181 ~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L  255 (582)
                      ..+++|++|++++|.+..     ++..+...++|+.|++++|.+....                  ...+...+..+++|
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~------------------~~~l~~~~~~~~~L  223 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG------------------ASALAETLASLKSL  223 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH------------------HHHHHHHhcccCCC
Confidence            334445555555554431     1122333344444444444433110                  00122334445556


Q ss_pred             cEEEcccCcccccchhh----h---cccccEEEccCCCCCC-----CCccccCCCCCCeEEccCCCCc
Q 007984          256 GTLDLHSNQLKEYCVEA----C---QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLR  311 (582)
Q Consensus       256 ~~L~l~~~~~~~~~~~~----~---~~~L~~l~l~~~~l~~-----~~~~l~~~~~L~~L~l~~~~~~  311 (582)
                      ++|++++|.++......    .   ...++.+++++|.+++     +...+..+++|+++++++|.+.
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            66666665554311110    0   1246666666665542     2234555677888888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.37  E-value=1.3e-13  Score=124.40  Aligned_cols=177  Identities=20%  Similarity=0.170  Sum_probs=101.0

Q ss_pred             ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCc----ccch-------hhhCCCCCcEEecCCCcCc-cC
Q 007984           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELPA-------AIGELHMLKSLDVSFNSIM-KI  106 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~----~l~~-------~~~~~~~L~~L~l~~~~~~-~l  106 (582)
                      ...++++++|++.+.     .+...+.+.+.|+..++++--..    .+|+       ++-.+++|++|+||+|.+. ..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            456788888888776     34456777778888877754222    3333       4566778888888888776 22


Q ss_pred             C----hhhhccCCccEEEccCCcCCcC--------------CcccccCCCCCeEEcCCCcCCC-----CccccccCCCCc
Q 007984          107 P----DEIGSATALVKFDCSSNQLKEL--------------PSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMS  163 (582)
Q Consensus       107 ~----~~~~~~~~L~~L~l~~~~~~~l--------------~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~  163 (582)
                      +    .-+..++.|++|.+.+|.+...              ......-+.|+++....|++.+     ++..|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            2    2345688888888888877521              1122344566666666665542     223355556666


Q ss_pred             EEEccCCcccc----cchhhhcccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCc
Q 007984          164 KLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL  220 (582)
Q Consensus       164 ~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~  220 (582)
                      .+.+..|.|..    ....++..|++|+.|++.+|.++.     +...+..+++|+.|++++|.+.
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            66666555441    222234455555555555554432     2223344445555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=3.4e-14  Score=135.86  Aligned_cols=206  Identities=29%  Similarity=0.389  Sum_probs=137.7

Q ss_pred             ChHHHHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCC
Q 007984            1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL   80 (582)
Q Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~   80 (582)
                      +++++..|-+-+.+.+++.++..+|-..+.           +........+++.+.+.++|..+..|..|+.+.++.|.+
T Consensus        42 l~r~leeA~~sg~l~Ls~rrlk~fpr~a~~-----------~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~  110 (722)
T KOG0532|consen   42 LERALEEAEYSGRLLLSGRRLKEFPRGAAS-----------YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI  110 (722)
T ss_pred             hhHHHHHHhhhcccccccchhhcCCCcccc-----------ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc
Confidence            467888888999999999998888876643           223445566777777777777666677777777777777


Q ss_pred             cccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCC
Q 007984           81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS  160 (582)
Q Consensus        81 ~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~  160 (582)
                      ..+|.++.++..|++++|+.|.+..+|..+..++ |+.|-+++|+++.+|..++..++|..|+.+.|++..++.-+..+.
T Consensus       111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            7777777777777777777777776666554443 666666777777666666666666666666666666666666666


Q ss_pred             CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc
Q 007984          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL  220 (582)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  220 (582)
                      .|+.|++..|++.+++.. +. .-.|..|+++.|.+..+|..|.+++.|+.|-+.+|.+.
T Consensus       190 slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            666666666666655554 22 34455566666666666656666666666666665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=2.1e-13  Score=130.59  Aligned_cols=190  Identities=33%  Similarity=0.483  Sum_probs=170.8

Q ss_pred             ceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCC
Q 007984           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM   92 (582)
Q Consensus        13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~   92 (582)
                      ..|++.+++-.+|.++-.             |..|+.+.+..|.+..+|..+..+..|+.|+|+.|+++.+|..+..++ 
T Consensus        79 ~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-  144 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-  144 (722)
T ss_pred             hhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-
Confidence            468899999999988754             567899999999999999999999999999999999999988887776 


Q ss_pred             CcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcc
Q 007984           93 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL  172 (582)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i  172 (582)
                      |+.|-+++|+++.+|..++....|.+|+.+.|.+..+|..++++.+|+.|+++.|.+..+|+.+. .-.|..||+++|++
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNki  223 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKI  223 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999988 56799999999999


Q ss_pred             cccchhhhcccccCcEEEccCCccCccchhhc---CCCCccEEeCCCCc
Q 007984          173 TVLSNNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNR  218 (582)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~---~~~~L~~L~l~~~~  218 (582)
                      ..++.. |..++.|++|-|.+|.+..-|+.+.   ...-.+.|+...|+
T Consensus       224 s~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  224 SYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            999887 9999999999999999988776543   34446778887774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=6.7e-12  Score=125.42  Aligned_cols=193  Identities=33%  Similarity=0.489  Sum_probs=100.7

Q ss_pred             EEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccC-CccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC
Q 007984           73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS  151 (582)
Q Consensus        73 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  151 (582)
                      +++..+.+..-...+.....++.+++.++.+..++....... +|+.|+++++++..++..+..+++|+.|++++|.+.+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~  177 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD  177 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence            444444442222333344555555555555555554444442 5555555555555554445555555555555555555


Q ss_pred             CccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCC
Q 007984          152 LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS  231 (582)
Q Consensus       152 i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~  231 (582)
                      ++......+.|+.|+++++++.+++.. ......|+++.+++|.....+..+....++..+.+.++++..++..++.+++
T Consensus       178 l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~  256 (394)
T COG4886         178 LPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN  256 (394)
T ss_pred             hhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence            544444555555555555555555442 2333445555555554444444455555555555555555554555555555


Q ss_pred             CcEEEcCCCcCcccchhhhccCCCcEEEcccCcccc
Q 007984          232 LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       232 L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~  267 (582)
                      ++.|++++|.+..++. ++...+++.++++++.+..
T Consensus       257 l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         257 LETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cceecccccccccccc-ccccCccCEEeccCccccc
Confidence            6666666666665544 5555566666666555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=7.9e-13  Score=119.34  Aligned_cols=231  Identities=22%  Similarity=0.312  Sum_probs=172.1

Q ss_pred             HHHHHhhcCceecCCCCCC-CcchHHHhhhccccCCCccccccCccEEEcCCCCcc----chh-------HhhcCCCCCc
Q 007984            4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLK-------EDLRNLPLLT   71 (582)
Q Consensus         4 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~----~~~-------~~~~~~~~L~   71 (582)
                      .+.....+..+++|++.++ .-...+...+..         -++|++.+++..-..    ++|       .++..+++|+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~---------~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~   95 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS---------KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ   95 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhh---------cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence            4455678889999999988 333333333333         568999999875222    444       4567888999


Q ss_pred             EEEcCCCCCc--c---cchhhhCCCCCcEEecCCCcCccCC--------------hhhhccCCccEEEccCCcCCcCC--
Q 007984           72 VLNVSHNKLS--E---LPAAIGELHMLKSLDVSFNSIMKIP--------------DEIGSATALVKFDCSSNQLKELP--  130 (582)
Q Consensus        72 ~L~L~~~~~~--~---l~~~~~~~~~L~~L~l~~~~~~~l~--------------~~~~~~~~L~~L~l~~~~~~~l~--  130 (582)
                      +|+|+.|.+.  .   +-+-++.+..|+.|-|.+|.+....              .-.+.-++|+++..+.|++..-+  
T Consensus        96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen   96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence            9999999877  2   2335678999999999999887321              12345689999999999887443  


Q ss_pred             ---cccccCCCCCeEEcCCCcCC-----CCccccccCCCCcEEEccCCcccccc----hhhhcccccCcEEEccCCccCc
Q 007984          131 ---SSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG  198 (582)
Q Consensus       131 ---~~~~~~~~L~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~  198 (582)
                         ..+...+.|+.+.+..|.+.     -+..++..|++|+.|++..|.++.-.    +.++..+++|+++++++|.+..
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence               45778899999999999876     34567899999999999999887433    3346678899999999998854


Q ss_pred             c-----chhh-cCCCCccEEeCCCCcCc-----cCCcCCcCCCCCcEEEcCCCcCc
Q 007984          199 M-----PETI-GSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       199 ~-----~~~l-~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      -     ..++ ...+.|+.|++.+|.++     .+...+...+.|+.|++.+|.+.
T Consensus       256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            2     1222 34689999999999987     23334556899999999999983

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.3e-12  Score=121.25  Aligned_cols=203  Identities=21%  Similarity=0.213  Sum_probs=133.1

Q ss_pred             cCCCCCcEEEcCCCCCcccc--hhhhCCCCCcEEecCCCcCccC---ChhhhccCCccEEEccCCcCCcCCc--ccccCC
Q 007984           65 RNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQLKELPS--SLGRCL  137 (582)
Q Consensus        65 ~~~~~L~~L~L~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~  137 (582)
                      .++.+|+++.|.++.+...+  .....|++++.|||+.|-+...   ..-+..+++|+.|+++.|.+.....  .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            45667777777777776554  3566788888888887766533   2335677888888888877663221  122567


Q ss_pred             CCCeEEcCCCcCC--CCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc--hhhcCCCCccEEe
Q 007984          138 NLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLD  213 (582)
Q Consensus       138 ~L~~L~l~~~~~~--~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~  213 (582)
                      .|+.|.++.|+++  ++...+..+++|+.|++.+|...-+......-...|++|++++|.+-..+  ...+.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            7888888888776  44445667788888888877543333333555667777777777775554  3456677777778


Q ss_pred             CCCCcCccC--CcC-----CcCCCCCcEEEcCCCcCccc--chhhhccCCCcEEEcccCcccc
Q 007984          214 LHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       214 l~~~~~~~~--~~~-----l~~~~~L~~L~l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~~  267 (582)
                      ++.|.+..+  |+.     ...+++|+.|++..|.+...  -..+..+++|+.+.+..+.++.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            877777644  222     34567777777777777533  2345566777777776666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=7.6e-12  Score=106.19  Aligned_cols=121  Identities=26%  Similarity=0.368  Sum_probs=38.8

Q ss_pred             ccCccEEEcCCCCccchhHhhc-CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhh-hccCCccEEEc
Q 007984           44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC  121 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~l  121 (582)
                      +..+++|+|+++.|+.+. .+. .+.+|+.|++++|.++.+ +.+..+++|++|++++|.++++...+ ..+++|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            556777888887777664 343 567777778877777766 35666777777777777777775544 35777777777


Q ss_pred             cCCcCCcCC--cccccCCCCCeEEcCCCcCCCCccc----cccCCCCcEEE
Q 007984          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLD  166 (582)
Q Consensus       122 ~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i~~~----l~~~~~L~~L~  166 (582)
                      ++|++.++.  ..+..+++|+.|++.+|.+..-+..    +..+|+|+.||
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            777776443  2344556666666666655433211    34445555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=2e-11  Score=122.07  Aligned_cols=195  Identities=34%  Similarity=0.464  Sum_probs=130.9

Q ss_pred             EEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCC-CCCeEEcCCCcCCCCccccccCCCCcEEEccCCccc
Q 007984           95 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT  173 (582)
Q Consensus        95 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~  173 (582)
                      .+++..+.+......+...+.++.|.+.++.+.+++....... +|+.|+++++.+..++..+..+++|+.|+++.|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5666666664333445555778888888888887777666664 788888888888877767777788888888888777


Q ss_pred             ccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccC
Q 007984          174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLS  253 (582)
Q Consensus       174 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~  253 (582)
                      +++.. .+..+.|+.+++++|.+..+|........|+++.+++|.....+..+..+.++..+.+.++++..++..++.++
T Consensus       177 ~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            77653 23667777777777777777765555556777777777655555566666667666677776666666666666


Q ss_pred             CCcEEEcccCcccccchhhhcccccEEEccCCCCCCC
Q 007984          254 KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL  290 (582)
Q Consensus       254 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  290 (582)
                      +++.|++++|.++.++......+++.++++++.+...
T Consensus       256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccceeccccccccccccccccCccCEEeccCcccccc
Confidence            6777777776666655533333355555555554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.7e-12  Score=120.47  Aligned_cols=206  Identities=27%  Similarity=0.266  Sum_probs=143.0

Q ss_pred             ccccEEEecCCCCccCCh--hhhccCCccEEEcCCCcCCc---CCccccCCCCCCEEEcccCcCCCCChH-HhhCCCCCC
Q 007984          357 VTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLS  430 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L~  430 (582)
                      ..|+++.+.++.+...+.  ....+++++.|+++.|-+..   +......+|+|+.|+++.|++...... .-..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            456778888887776653  55568888888888887665   333456788888888888877654332 224578888


Q ss_pred             EeeCCCCCCccCCC-ccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCc--hhhhccCCCCEEecCC
Q 007984          431 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP--TDILRLQQLRILDLSQ  506 (582)
Q Consensus       431 ~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~--~~~~~~~~L~~L~l~~  506 (582)
                      .|.++.|.++.-.- .....+|+|+.|++..|....+......-+..|++|+| .+++...+  .....++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            88888888774221 12456888888888888543344445566778888888 66666555  4677888888888888


Q ss_pred             CcCCcc--chh-----hcCCCCCCEEeCCCCcCCcCCC--cccccccccceeeccCCCCCcchHHH
Q 007984          507 NSLQSI--PEG-----FKNLTSLTELDLSDNNISALPP--ELGLLEPSLQALRLDGNPLRSIRRTI  563 (582)
Q Consensus       507 ~~l~~l--~~~-----~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~~  563 (582)
                      |.+.++  |.+     ....++|++|++..|++...+.  .++.+ ++|+.|.+.+|++..-...+
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~ln~e~~~a  345 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL-ENLKHLRITLNYLNKETDTA  345 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc-chhhhhhcccccccccccce
Confidence            888755  322     3567788888888888865544  33444 78888888888876655443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=1.3e-11  Score=104.78  Aligned_cols=106  Identities=29%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             ccCCccEEEccCCcCCcCCcccc-cCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEE
Q 007984          112 SATALVKFDCSSNQLKELPSSLG-RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI  190 (582)
Q Consensus       112 ~~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  190 (582)
                      ++.++++|+++++.+..+. .++ .+.+|+.|++++|.+..+ +.+..+++|++|++++|+++++.......+++|++|+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3445555666665555542 233 345555555555555555 2455555666666666655555433123345555555


Q ss_pred             ccCCccCccc--hhhcCCCCccEEeCCCCcC
Q 007984          191 ASKNLLNGMP--ETIGSLSRLIRLDLHQNRI  219 (582)
Q Consensus       191 l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~  219 (582)
                      +++|.+..+.  ..+..+++|+.|++.+|.+
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            5555443322  1233334444444444433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=8.2e-12  Score=110.29  Aligned_cols=180  Identities=26%  Similarity=0.298  Sum_probs=107.6

Q ss_pred             hhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc------------------------ccccCCCCCe
Q 007984           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS------------------------SLGRCLNLSD  141 (582)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~------------------------~~~~~~~L~~  141 (582)
                      .+..+++|+.+.++.|.-.++..-...-|.|+++.++...+...|.                        ....++.|++
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            3455666777777766655544433445566666665554332211                        1223456666


Q ss_pred             EEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCcc
Q 007984          142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS  221 (582)
Q Consensus       142 L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  221 (582)
                      +++++|.++.+.+...-.++++.|++++|++..++.  ++.+++|+.|++++|.+..+..+-.++-+.++|.+++|.+..
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence            777777777666666666777777777777766655  666666777777776666655555556666666666666655


Q ss_pred             CCcCCcCCCCCcEEEcCCCcCccc--chhhhccCCCcEEEcccCccccc
Q 007984          222 IPSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEY  268 (582)
Q Consensus       222 ~~~~l~~~~~L~~L~l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~~~  268 (582)
                      + ..+..+.+|..|++++|+|..+  -..++++|.|+.+.+.+|.+..+
T Consensus       367 L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  367 L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            5 3455556666666666666643  23455666666666666655543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2.3e-11  Score=107.54  Aligned_cols=201  Identities=20%  Similarity=0.239  Sum_probs=139.8

Q ss_pred             ccCccEEEcCCCC-------cc--chhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccC----C---
Q 007984           44 AVDLQKLILAHNN-------IE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI----P---  107 (582)
Q Consensus        44 ~~~l~~L~l~~~~-------i~--~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l----~---  107 (582)
                      |..|+.|.+++..       |.  .+|-.+.-+++|+.+.++.|.-..|.+....-|.|+.+.+....+...    |   
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~  260 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI  260 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence            5566777666531       11  122234455667777777765554433333345555555544332210    1   


Q ss_pred             -----------------hhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCC
Q 007984          108 -----------------DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (582)
Q Consensus       108 -----------------~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~  170 (582)
                                       ..+....-|+++++++|.++.+..+..-.|.++.|+++.|.+..+. .++.+++|+.|++++|
T Consensus       261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN  339 (490)
T ss_pred             hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc
Confidence                             1223345688899999988888777777889999999999888874 4888899999999999


Q ss_pred             cccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC--CcCCcCCCCCcEEEcCCCcCcccch
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPA  247 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~l~~  247 (582)
                      .++.+... -.++-+++.|.+++|.++.+ +.+.++-+|..||+++|++..+  ...+++++.|+++.+.+|.+..++.
T Consensus       340 ~Ls~~~Gw-h~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  340 LLAECVGW-HLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHhhhhh-HhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            88877654 44667888899999888776 3566778899999999998844  3578899999999999999886654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.00  E-value=4.9e-11  Score=119.17  Aligned_cols=241  Identities=27%  Similarity=0.360  Sum_probs=119.9

Q ss_pred             CCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCC
Q 007984           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (582)
Q Consensus        67 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  146 (582)
                      +..++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++.+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence            344444444444444432334455555555555555555543345555555555555555544 2334444455555555


Q ss_pred             CcCCCCccccccCCCCcEEEccCCcccccch-hhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcC
Q 007984          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (582)
Q Consensus       147 ~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  225 (582)
                      |.+..+ ..+..++.|+.+++++|++..+.. . ...+.+++.+.+.+|.+..+. .+.....+..+++.++.+..+. .
T Consensus       150 N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~  225 (414)
T KOG0531|consen  150 NLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-G  225 (414)
T ss_pred             Ccchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-C
Confidence            555554 234445556666666655555544 2 345555555556655554432 1122223333355555544331 1


Q ss_pred             CcCCC--CCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC---CCc--cccCCC
Q 007984          226 ISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG---LPP--EIGKMT  298 (582)
Q Consensus       226 l~~~~--~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~---~~~--~l~~~~  298 (582)
                      +....  .|+.++++++.+...+..+..+.++..+++.++.+...........+..+....+.+..   ...  .....+
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence            11122  25666666666665544455556666666666666554443333333333333443332   111  134566


Q ss_pred             CCCeEEccCCCCcc
Q 007984          299 TLRKLLLTGNPLRT  312 (582)
Q Consensus       299 ~L~~L~l~~~~~~~  312 (582)
                      .++.+.+..++...
T Consensus       306 ~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  306 TLVTLTLELNPIRK  319 (414)
T ss_pred             cccccccccCcccc
Confidence            77777777776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=7.3e-10  Score=118.25  Aligned_cols=103  Identities=31%  Similarity=0.484  Sum_probs=51.4

Q ss_pred             cCccEEEcCCCC--ccchhH-hhcCCCCCcEEEcCCC-CCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984           45 VDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (582)
Q Consensus        45 ~~l~~L~l~~~~--i~~~~~-~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  120 (582)
                      +.++.|-+..+.  +..++. .|..++.|++|||++| .+..+|..++.+-+|++|+++++.+.++|..+.++..|.+|+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            345555555543  333332 3455555555555543 233555555555555555555555555555555555555555


Q ss_pred             ccCCcCC-cCCcccccCCCCCeEEcCCC
Q 007984          121 CSSNQLK-ELPSSLGRCLNLSDFKASNN  147 (582)
Q Consensus       121 l~~~~~~-~l~~~~~~~~~L~~L~l~~~  147 (582)
                      +..+... .++.....+.+|++|.+...
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccccccccchhhhcccccEEEeecc
Confidence            5544322 22233333555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=1.8e-09  Score=115.37  Aligned_cols=126  Identities=27%  Similarity=0.366  Sum_probs=98.2

Q ss_pred             cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCC--Ccccch-hhhCCCCCcEEecCCC-cCccCChhhhccCCccEEE
Q 007984           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFD  120 (582)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~  120 (582)
                      ..+|.+.+-++.+..++.... ++.|++|-+.++.  +..++. .|..++.|++|||++| .+..+|..++.+-+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            467888888887777655443 4578888888875  555544 5788999999999977 6678999999999999999


Q ss_pred             ccCCcCCcCCcccccCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCc
Q 007984          121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK  171 (582)
Q Consensus       121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~  171 (582)
                      ++++.+..+|..+.+++.|.+|++..+... .++.....+++|++|.+....
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999999999999999999998877544 444455668888888886654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.94  E-value=1.5e-10  Score=115.65  Aligned_cols=195  Identities=33%  Similarity=0.404  Sum_probs=137.5

Q ss_pred             ccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC
Q 007984          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (582)
Q Consensus       359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  438 (582)
                      ++.+.+..+.+..+...+..+.+++.+++.++.+..+...+..+++|++|++++|.|+++..  +..++.|+.|++.+|.
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNL  151 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCc
Confidence            34444555555555455667889999999999998887557889999999999999998866  6778889999999999


Q ss_pred             CccCCCccccCCCCCcEEeCCCCcCCCCCC-CCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhc
Q 007984          439 LRQVPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFK  517 (582)
Q Consensus       439 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~  517 (582)
                      +..+..  +..+++|+.+++++|.+..+.. . ...+.+++++.+..+.......+..+..+..+++..|.+..+ .++.
T Consensus       152 i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~-~~l~  227 (414)
T KOG0531|consen  152 ISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL-EGLN  227 (414)
T ss_pred             chhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec-cCcc
Confidence            988774  5668999999999998887765 3 578889999999554444444444445555556777766655 2233


Q ss_pred             CCCC--CCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcch
Q 007984          518 NLTS--LTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR  560 (582)
Q Consensus       518 ~l~~--L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~  560 (582)
                      .+..  |+++++++|++..++..+... +.++.+++.+|.+....
T Consensus       228 ~~~~~~L~~l~l~~n~i~~~~~~~~~~-~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  228 ELVMLHLRELYLSGNRISRSPEGLENL-KNLPVLDLSSNRISNLE  271 (414)
T ss_pred             cchhHHHHHHhcccCcccccccccccc-ccccccchhhccccccc
Confidence            3333  677777777766654332222 66777777777665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=7.8e-10  Score=77.06  Aligned_cols=60  Identities=45%  Similarity=0.677  Sum_probs=55.8

Q ss_pred             CCCCEEecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCC
Q 007984          497 QQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL  556 (582)
Q Consensus       497 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~  556 (582)
                      ++|++|++++|+++.+|. .|.++++|++|++++|+++.+++..+..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999999974 589999999999999999999999999999999999999975

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=1.9e-09  Score=75.10  Aligned_cols=60  Identities=40%  Similarity=0.650  Sum_probs=39.2

Q ss_pred             CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      |+|++|++++|+++.++...|.++++|++|++++|.+..+++.+|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            356666666666666666666666666666666666666666666666666666666664

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.69  E-value=3.2e-10  Score=112.18  Aligned_cols=125  Identities=30%  Similarity=0.413  Sum_probs=70.4

Q ss_pred             CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCC
Q 007984           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN  170 (582)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~  170 (582)
                      +|.+.+.++|.+..+..++.-++.|++|+++.|++.... .+..|++|++||+++|.+..+|.. ...| +|+.|.+.+|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence            355555566665555555666666666666666666553 555666666666666666655543 2222 3666666666


Q ss_pred             cccccchhhhcccccCcEEEccCCccCccc--hhhcCCCCccEEeCCCCcCc
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRIL  220 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~  220 (582)
                      .++.+..  +.++++|+.|++++|.+....  ..+..+..|+.|.+.||.+.
T Consensus       243 ~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6655444  556666666666666554322  12233445566666666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4e-09  Score=93.53  Aligned_cols=149  Identities=19%  Similarity=0.243  Sum_probs=91.7

Q ss_pred             CCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCc-CCc--CCcccccCCCCCeE
Q 007984           69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQ-LKE--LPSSLGRCLNLSDF  142 (582)
Q Consensus        69 ~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~~~L~~L  142 (582)
                      .|++|||+...++  ++-..++.|.+|+.|.+.++.+. .+...+....+|+.|++++|. ++.  +...+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            6888888888877  44456788888988888888877 455557778888899988775 442  22356788888889


Q ss_pred             EcCCCcCCC-Ccc-cccc-CCCCcEEEccCCccc--ccchh-hhcccccCcEEEccCCcc-Cc-cchhhcCCCCccEEeC
Q 007984          143 KASNNCITS-LPE-DLAD-CSKMSKLDVEGNKLT--VLSNN-LIASWTMLTELIASKNLL-NG-MPETIGSLSRLIRLDL  214 (582)
Q Consensus       143 ~l~~~~~~~-i~~-~l~~-~~~L~~L~l~~~~i~--~~~~~-~~~~~~~L~~L~l~~~~~-~~-~~~~l~~~~~L~~L~l  214 (582)
                      ++++|.... ... ...+ -++|..|++++++-.  .-.-. ....|++|.+|++++|.. +. ....+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            988886651 111 1111 257788888776321  11111 134556666666665533 11 1123445555555555


Q ss_pred             CCC
Q 007984          215 HQN  217 (582)
Q Consensus       215 ~~~  217 (582)
                      +.|
T Consensus       346 sRC  348 (419)
T KOG2120|consen  346 SRC  348 (419)
T ss_pred             hhh
Confidence            555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.41  E-value=1.5e-08  Score=94.33  Aligned_cols=131  Identities=22%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             cCCCCCCEEEcccC-cCCCCChHHhh-CCCCCCEeeCCCCC-CccCCCccc-cCCCCCcEEeCCCCcCCCCC--CCCCCC
Q 007984          400 SSCASLQTLILSRN-KIKDWPDAILT-SLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASLPE--NPPFSS  473 (582)
Q Consensus       400 ~~~~~L~~L~l~~~-~l~~~~~~~l~-~l~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~--~~~~~~  473 (582)
                      ..+..|++++.+++ .+++.....++ ++++|+.+.+.+|+ ++......+ .+++.|+.+++.++......  ...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            34566667766665 44444333333 46677777776664 333322222 34566666666665432221  111224


Q ss_pred             Cccchhhhh--ccccccC-----chhhhccCCCCEEecCCCcCC--ccchhhcCCCCCCEEeCCCC
Q 007984          474 LPHLQELYL--RMQLREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDN  530 (582)
Q Consensus       474 ~~~L~~L~l--~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n  530 (582)
                      |+.|+.+.+  +..++..     ...-.++..|+.+.+++|...  ..-+.+..|+.||.+++-+|
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            455554444  1111111     111234455666666666433  22234555666666666666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.2e-08  Score=89.01  Aligned_cols=173  Identities=18%  Similarity=0.150  Sum_probs=120.0

Q ss_pred             CccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCc-ccchhhhCCCCCcEEecCCC-cCccC--ChhhhccCCccEE
Q 007984           46 DLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMKI--PDEIGSATALVKF  119 (582)
Q Consensus        46 ~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~~l--~~~~~~~~~L~~L  119 (582)
                      .|+.+|||...|+  .+-..+..|.+|+.|.|.+..++ .+...+....+|+.|+++.| .+++.  .-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5888999988777  34446778889999999998887 45567788899999999887 45543  2336789999999


Q ss_pred             EccCCcCCc--CCccccc-CCCCCeEEcCCCcCC----CCccccccCCCCcEEEccCCc-ccccchhhhcccccCcEEEc
Q 007984          120 DCSSNQLKE--LPSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIA  191 (582)
Q Consensus       120 ~l~~~~~~~--l~~~~~~-~~~L~~L~l~~~~~~----~i~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l  191 (582)
                      +++-|....  +.....+ -++|+.|+++|+.-.    .+..-...|++|.+||++++. ++.-....+.+++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            999887551  1111222 357888888888422    333335678999999998774 34333334777888999999


Q ss_pred             cCCccCc--cchhhcCCCCccEEeCCCCc
Q 007984          192 SKNLLNG--MPETIGSLSRLIRLDLHQNR  218 (582)
Q Consensus       192 ~~~~~~~--~~~~l~~~~~L~~L~l~~~~  218 (582)
                      +.|..-.  .--.+...+.|..||+.++-
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEecccc
Confidence            8885421  11235667888888888763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=7.1e-07  Score=78.50  Aligned_cols=204  Identities=20%  Similarity=0.186  Sum_probs=106.9

Q ss_pred             ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCc----ccc-------hhhhCCCCCcEEecCCCcCc-cC
Q 007984           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI  106 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~----~l~-------~~~~~~~~L~~L~l~~~~~~-~l  106 (582)
                      ...+++++||||.|.     .+...+++-.+|+..+++.--..    .++       .++-.||+|+.++|++|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            456788888888776     33455666677777777654222    222       25567888888888888776 33


Q ss_pred             Ch----hhhccCCccEEEccCCcCCcC-----Ccc---------cccCCCCCeEEcCCCcCCCCcc-----ccccCCCCc
Q 007984          107 PD----EIGSATALVKFDCSSNQLKEL-----PSS---------LGRCLNLSDFKASNNCITSLPE-----DLADCSKMS  163 (582)
Q Consensus       107 ~~----~~~~~~~L~~L~l~~~~~~~l-----~~~---------~~~~~~L~~L~l~~~~~~~i~~-----~l~~~~~L~  163 (582)
                      |.    -+...+.|.||.+++|.+.-+     ...         ..+-|.|+++.+..|++...+.     .+..-.+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            33    245677788888888876522     111         1233555555555555543322     123334455


Q ss_pred             EEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCcc-----CCcCCcCCCCCcEEEcC
Q 007984          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMG  238 (582)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~  238 (582)
                      .+.+..|.|.--+...+                  +-..+..+.+|+.||+.+|.++.     +..++..-+.|+.|.+.
T Consensus       189 ~vki~qNgIrpegv~~L------------------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         189 EVKIQQNGIRPEGVTML------------------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             eEEeeecCcCcchhHHH------------------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            55555444431100000                  00112234555666666555541     12233334445666666


Q ss_pred             CCcCcc-----cchhh--hccCCCcEEEcccCcc
Q 007984          239 NNALSA-----LPAEL--GKLSKLGTLDLHSNQL  265 (582)
Q Consensus       239 ~~~i~~-----l~~~l--~~~~~L~~L~l~~~~~  265 (582)
                      +|.++.     +-..+  ...|+|..|...+|.+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            665551     11112  2346777777766654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.34  E-value=4.6e-07  Score=74.66  Aligned_cols=120  Identities=18%  Similarity=0.312  Sum_probs=41.9

Q ss_pred             HhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCch-hhhccCCCC
Q 007984          422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT-DILRLQQLR  500 (582)
Q Consensus       422 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~  500 (582)
                      +|.++++|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+...+|.++++++.+.+......++. .+..++.|+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTEC
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccccccccccccccccccc
Confidence            355555555555543 355555555555555666655553 44444444554444444444222222222 223344555


Q ss_pred             EEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCccccccccc
Q 007984          501 ILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSL  546 (582)
Q Consensus       501 ~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L  546 (582)
                      .+++..+ +..++ ..|.++ .|+++.+.+ .++.++...|..|++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5555433 33332 224444 555555554 3444455555554444

>PLN03150 hypothetical protein; Provisional

Probab=98.34  E-value=6.9e-07  Score=93.71  Aligned_cols=105  Identities=33%  Similarity=0.438  Sum_probs=55.4

Q ss_pred             CCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc
Q 007984          429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS  508 (582)
Q Consensus       429 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  508 (582)
                      ++.|++++|.+....+..+..+++|+.|+|++|.+.+..+..+.                      .+++|+.|++++|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~----------------------~l~~L~~LdLs~N~  477 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG----------------------SITSLEVLDLSYNS  477 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh----------------------CCCCCCEEECCCCC
Confidence            55666666666654444566666666666666666554444444                      44555555555555


Q ss_pred             CC-ccchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceeeccCCC
Q 007984          509 LQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNP  555 (582)
Q Consensus       509 l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~l~~~~  555 (582)
                      +. .+|..+.++++|++|+|++|+++ .+|..+.....++..+++.+|+
T Consensus       478 lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            54 34444555555555555555544 3444333222344445554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=1.6e-07  Score=73.53  Aligned_cols=110  Identities=19%  Similarity=0.287  Sum_probs=62.8

Q ss_pred             cCccEEEcCCCCccchhHh---hcCCCCCcEEEcCCCCCcccchhhhC-CCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984           45 VDLQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (582)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~---~~~~~~L~~L~L~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  120 (582)
                      ..+..++|++|.+-++++.   +.+..+|+..+|++|.+...|..|.. .+-.+.+++.+|.+..+|..+..++.|+.++
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            3445556666655544432   33445555556666666666555543 3456666666666666666666666666666


Q ss_pred             ccCCcCCcCCcccccCCCCCeEEcCCCcCCCCcc
Q 007984          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE  154 (582)
Q Consensus       121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~  154 (582)
                      ++.|.+...|..+..+.++-.|+..++....++.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            6666666555555555566666666655554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=6.5e-07  Score=56.70  Aligned_cols=41  Identities=41%  Similarity=0.690  Sum_probs=28.7

Q ss_pred             CCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCC
Q 007984          497 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP  537 (582)
Q Consensus       497 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~  537 (582)
                      ++|++|++++|+++.+|..+.++++|++|++++|+++++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46777777777777777667777777777777777776543

...

>PLN03150 hypothetical protein; Provisional

Probab=98.28  E-value=2.1e-06  Score=90.06  Aligned_cols=91  Identities=26%  Similarity=0.329  Sum_probs=66.9

Q ss_pred             CccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCC
Q 007984          381 EITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (582)
Q Consensus       381 ~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  459 (582)
                      .++.|+++++.+.. +|..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|++....+..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36777888877764 66677778888888888888776555567788888888888888876555567778888888888


Q ss_pred             CCcCCCCCCCCC
Q 007984          460 YNIASLPENPPF  471 (582)
Q Consensus       460 ~n~l~~~~~~~~  471 (582)
                      +|.+++..+..+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            887765554333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=4.3e-07  Score=80.91  Aligned_cols=197  Identities=19%  Similarity=0.169  Sum_probs=105.1

Q ss_pred             CcEEEcCCCCCcccch--hh-hCCCCCcEEecCCCcCcc---CChhhhccCCccEEEccCCcCCcCCccc-ccCCCCCeE
Q 007984           70 LTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSDF  142 (582)
Q Consensus        70 L~~L~L~~~~~~~l~~--~~-~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L  142 (582)
                      ++.+-+.++.|....+  .| ..+..++.+||..|.++.   +..-+.++|.|++|+++.|++......+ ....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            3344455555554322  22 235566666666666653   2233456666666666666655221222 234566666


Q ss_pred             EcCCCcCC--CCccccccCCCCcEEEccCCcccc--cchhhhcc-cccCcEEEccCCccCccc---hhhcCCCCccEEeC
Q 007984          143 KASNNCIT--SLPEDLADCSKMSKLDVEGNKLTV--LSNNLIAS-WTMLTELIASKNLLNGMP---ETIGSLSRLIRLDL  214 (582)
Q Consensus       143 ~l~~~~~~--~i~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l  214 (582)
                      -+++..+.  .....+..++.+++|.++.|++..  +++..... .+.++.+....|....+.   ..-..++++..+-+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            66666443  344445666666666666664431  22221222 234555555555443211   11123467777777


Q ss_pred             CCCcCccC--CcCCcCCCCCcEEEcCCCcCccc--chhhhccCCCcEEEcccCccc
Q 007984          215 HQNRILSI--PSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK  266 (582)
Q Consensus       215 ~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~  266 (582)
                      ..|.+...  .......+.+..|+++.+.|.+.  ...+..++.|+.|.++++.+.
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            77766533  23455566666777777777633  244666777777777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=1.4e-08  Score=100.79  Aligned_cols=123  Identities=24%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             EEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccC
Q 007984          118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (582)
Q Consensus       118 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (582)
                      +.+++.|.+..+...+.-++.+++|+++.|++.++. .+..|++|++||+++|.+..++.....+|. |..|.+.+|.++
T Consensus       168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT  245 (1096)
T ss_pred             hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence            333444444333334444444555555555444442 444445555555555544444433333333 444455544444


Q ss_pred             ccchhhcCCCCccEEeCCCCcCccCC--cCCcCCCCCcEEEcCCCcCc
Q 007984          198 GMPETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       198 ~~~~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~  243 (582)
                      ++. .+.++.+|+.||+++|-+....  ..+..+..|+.|+|.+|.+-
T Consensus       246 tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  246 TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            332 2334444455555544433221  22333444444455544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=4.2e-07  Score=79.91  Aligned_cols=188  Identities=20%  Similarity=0.226  Sum_probs=107.8

Q ss_pred             hHhhcCCCCCcEEEcCCCCCcc-----cchhhhCCCCCcEEecCCCcCc----cCC-------hhhhccCCccEEEccCC
Q 007984           61 KEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIP-------DEIGSATALVKFDCSSN  124 (582)
Q Consensus        61 ~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~----~l~-------~~~~~~~~L~~L~l~~~  124 (582)
                      ...+..+..++.++|++|.|.+     +...+.+-.+|+..++++-...    .++       .++..|++|++.++|.|
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            3445557788888888887772     3335566677777777654322    122       22334555555555555


Q ss_pred             cCC-cCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhh-------------hcccccCcEEE
Q 007984          125 QLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL-------------IASWTMLTELI  190 (582)
Q Consensus       125 ~~~-~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~-------------~~~~~~L~~L~  190 (582)
                      .+. +.|..                   +.+.+++-+.|++|.+++|.+..+...-             .+.-+.|+++.
T Consensus       103 Afg~~~~e~-------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238         103 AFGSEFPEE-------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             ccCcccchH-------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            443 11111                   1122344455555555555444332221             23346677777


Q ss_pred             ccCCccCccch-----hhcCCCCccEEeCCCCcCccC------CcCCcCCCCCcEEEcCCCcCccc-----chhhhccCC
Q 007984          191 ASKNLLNGMPE-----TIGSLSRLIRLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSAL-----PAELGKLSK  254 (582)
Q Consensus       191 l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~i~~l-----~~~l~~~~~  254 (582)
                      ...|.+...+.     .+..-.+|+.+.+..|.|..-      ...+..+.+|+.|++++|.++..     ...+...+.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            77777765542     233335788888888877621      23456678888888888877722     233455567


Q ss_pred             CcEEEcccCcccc
Q 007984          255 LGTLDLHSNQLKE  267 (582)
Q Consensus       255 L~~L~l~~~~~~~  267 (582)
                      |++|.+..|-++.
T Consensus       244 lrEL~lnDClls~  256 (388)
T COG5238         244 LRELRLNDCLLSN  256 (388)
T ss_pred             hhhccccchhhcc
Confidence            7888877776553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.21  E-value=1.3e-06  Score=72.01  Aligned_cols=121  Identities=18%  Similarity=0.367  Sum_probs=57.1

Q ss_pred             cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccc
Q 007984          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (582)
Q Consensus       398 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  477 (582)
                      .|..+++|+.+.+.. .+..+....|..+++|+.+.+.++ +..+...+|..+++|+.+.+.+ .+..+...+|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            456666677776653 455555666667777777777653 6666666677776677777754 4555555667777777


Q ss_pred             hhhhhccccccCch-hhhccCCCCEEecCCCcCCccc-hhhcCCCCCC
Q 007984          478 QELYLRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLT  523 (582)
Q Consensus       478 ~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~  523 (582)
                      +.+.+..++..+.. .+.++ .|+.+.+.+ .+..++ ..|.++++||
T Consensus        84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            77777444444444 34444 778777765 444443 3477777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=8.6e-07  Score=79.07  Aligned_cols=215  Identities=20%  Similarity=0.234  Sum_probs=140.2

Q ss_pred             ccEEEcCCCCccchh--Hhhc-CCCCCcEEEcCCCCCcc---cchhhhCCCCCcEEecCCCcCccCChhh-hccCCccEE
Q 007984           47 LQKLILAHNNIEKLK--EDLR-NLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKF  119 (582)
Q Consensus        47 l~~L~l~~~~i~~~~--~~~~-~~~~L~~L~L~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L  119 (582)
                      ++.+.+.++.|....  +.|+ .+++++.+||.+|.++.   +...+.++|.|+.|+++.|.+...-... ....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            446677777766443  3343 67889999999998884   4446688999999999988776332222 356688888


Q ss_pred             EccCCcCC--cCCcccccCCCCCeEEcCCCcCCCC---cccccc-CCCCcEEEccCCccccc--chhhhcccccCcEEEc
Q 007984          120 DCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL---PEDLAD-CSKMSKLDVEGNKLTVL--SNNLIASWTMLTELIA  191 (582)
Q Consensus       120 ~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i---~~~l~~-~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l  191 (582)
                      -+.|+.+.  .....+..+|.++.|.++.|++..+   .+..+. -+.++++....|....-  ........+++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            88887755  4555667788888888888854421   111222 23566666666543311  0111334577888888


Q ss_pred             cCCccCccc--hhhcCCCCccEEeCCCCcCccCC--cCCcCCCCCcEEEcCCCcCcc-c----c--hhhhccCCCcEEEc
Q 007984          192 SKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSA-L----P--AELGKLSKLGTLDL  260 (582)
Q Consensus       192 ~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~-l----~--~~l~~~~~L~~L~l  260 (582)
                      ..+.+....  .....++.+--|+++.+++...+  +.+.+++.|..|.+.++.+.+ +    +  -.++.+++++.|+=
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            888775443  34555677778888888888553  467888899999998888762 2    1  12467778887764


Q ss_pred             c
Q 007984          261 H  261 (582)
Q Consensus       261 ~  261 (582)
                      +
T Consensus       287 s  287 (418)
T KOG2982|consen  287 S  287 (418)
T ss_pred             c
Confidence            4

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=2.5e-07  Score=72.53  Aligned_cols=85  Identities=27%  Similarity=0.498  Sum_probs=42.7

Q ss_pred             CccEEEcCCCCccchhHhhc-CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC
Q 007984           46 DLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  124 (582)
                      +|..+++++|.+..+|..|. .++..+.|+|.++.+..+|.-+..++.|+.|+++.|.+...|..+..+.++-.|+..++
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            44445555555555544332 33455555555555555555555555555555555555555554444555555555555


Q ss_pred             cCCcCC
Q 007984          125 QLKELP  130 (582)
Q Consensus       125 ~~~~l~  130 (582)
                      ....++
T Consensus       134 a~~eid  139 (177)
T KOG4579|consen  134 ARAEID  139 (177)
T ss_pred             ccccCc
Confidence            444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=2.4e-05  Score=75.28  Aligned_cols=153  Identities=18%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             cCCccEEEcCCCcCCcCCccccCCCCCCEEEcccC-cCCCCChHHhhCCCCCCEeeCCCC-CCccCCCccccCCCCCcEE
Q 007984          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPMLQIL  456 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L  456 (582)
                      +.+++.|++++|.++.+|. +  .++|++|.+++| .++.++.. +  .++|++|++++| .+..++       .+|+.|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP-------ESVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc-------cccceE
Confidence            4566666666666666652 1  234666666664 33333321 1  246677777666 333322       346666


Q ss_pred             eCCCCcCCCCCCCCCCCC-ccchhhhhccccccCchhh--hccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCC
Q 007984          457 DLSYNIASLPENPPFSSL-PHLQELYLRMQLREAPTDI--LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS  533 (582)
Q Consensus       457 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~  533 (582)
                      +++++....     +..+ ++|++|.+...-......+  .-.++|+.|++++|....+|..+.  .+|+.|+++.+...
T Consensus       118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~  190 (426)
T PRK15386        118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKT  190 (426)
T ss_pred             EeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccccc
Confidence            665543322     2222 3566666521100000000  122689999999988766665443  58999998876433


Q ss_pred             --cCCCcccccccccceeeccCC
Q 007984          534 --ALPPELGLLEPSLQALRLDGN  554 (582)
Q Consensus       534 --~l~~~~~~~~~~L~~L~l~~~  554 (582)
                        .++.  ...++++ .|++.+|
T Consensus       191 sLeI~~--~sLP~nl-~L~f~n~  210 (426)
T PRK15386        191 TWNISF--EGFPDGL-DIDLQNS  210 (426)
T ss_pred             cccCcc--ccccccc-Eechhhh
Confidence              2232  2222555 6676666

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.09  E-value=7e-06  Score=69.26  Aligned_cols=83  Identities=19%  Similarity=0.296  Sum_probs=51.8

Q ss_pred             CCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc--hhhcCCCCccEEeC
Q 007984          137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDL  214 (582)
Q Consensus       137 ~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l  214 (582)
                      .....+++++|++..+ +.|..++.|.+|.++.|+|+.|++..-...++|..|.+.+|.+..+.  .-+..|+.|+.|.+
T Consensus        42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            3555677777777666 45777788888888888888777764444556666666666554432  22344555555555


Q ss_pred             CCCcCc
Q 007984          215 HQNRIL  220 (582)
Q Consensus       215 ~~~~~~  220 (582)
                      -+|.++
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.07  E-value=2.9e-07  Score=85.97  Aligned_cols=216  Identities=19%  Similarity=0.137  Sum_probs=132.6

Q ss_pred             hhhcccccccEEEecCCC-Cc--cCChhhhccCCccEEEcCCCcCCc---CCccccCCCCCCEEEcccC-cCCCCChHHh
Q 007984          351 MATRLSVTSKELSLEGMN-LS--AIPSEIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRN-KIKDWPDAIL  423 (582)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~-~~--~i~~~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l  423 (582)
                      .....+.+++.++++.|. +.  .+.....++..++.+.+.+|.-..   +-..-..++-+.++++.+| .+++.....+
T Consensus       210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i  289 (483)
T KOG4341|consen  210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI  289 (483)
T ss_pred             HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence            344445556666665552 11  222333345567777777764322   2222356666777777776 5666554333


Q ss_pred             -hCCCCCCEeeCCCCC-CccCCCccc-cCCCCCcEEeCCCCc-CCCCCCCCC-CCCccchhhhh-cc-cccc--Cchhhh
Q 007984          424 -TSLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNI-ASLPENPPF-SSLPHLQELYL-RM-QLRE--APTDIL  494 (582)
Q Consensus       424 -~~l~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l-~~-~~~~--~~~~~~  494 (582)
                       ..+..|+.|..+++. +++..-.++ .++++|+.+.+++|+ ++......+ .+++.|+.+++ .. .+..  +...-.
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence             458899999998865 333222222 578999999999985 444333333 36899999999 32 2222  222335


Q ss_pred             ccCCCCEEecCCCcC-Cc-----cchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceeeccCCC-CCcchHHHhcc
Q 007984          495 RLQQLRILDLSQNSL-QS-----IPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNP-LRSIRRTILDR  566 (582)
Q Consensus       495 ~~~~L~~L~l~~~~l-~~-----l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~  566 (582)
                      +++.|+++.++.|.. +.     +..+-..+..|+.+.+++|... +....-...|++|+.+++.+|. +.+-+...|.+
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence            799999999999843 32     2333456778999999999544 3323335667999999999996 44434444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=2.7e-06  Score=88.94  Aligned_cols=147  Identities=30%  Similarity=0.353  Sum_probs=90.3

Q ss_pred             CCCCEEEcccCcC--CCCChHHhhCCCCCCEeeCCCCCCccCC-CccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchh
Q 007984          403 ASLQTLILSRNKI--KDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE  479 (582)
Q Consensus       403 ~~L~~L~l~~~~l--~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  479 (582)
                      .+|++|++++...  .+++...-.-+|+|+.|.+++-.+..-. ...+.++++|..||+|+++++.+  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4566666666422  2233333344677777777665443211 12246677777777777777665  44677788888


Q ss_pred             hhhcc-ccc--cCchhhhccCCCCEEecCCCcCCccc-------hhhcCCCCCCEEeCCCCcCCc--CCCcccccccccc
Q 007984          480 LYLRM-QLR--EAPTDILRLQQLRILDLSQNSLQSIP-------EGFKNLTSLTELDLSDNNISA--LPPELGLLEPSLQ  547 (582)
Q Consensus       480 L~l~~-~~~--~~~~~~~~~~~L~~L~l~~~~l~~l~-------~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~~L~  547 (582)
                      |.+++ .+.  .....++++++|+.||+|.......+       ++-..+|+|+.||.+|..+..  +...+.+. |+|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH-~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH-PNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC-ccHh
Confidence            87733 222  22346788999999999987544221       234568999999999987762  22223344 6666


Q ss_pred             eeecc
Q 007984          548 ALRLD  552 (582)
Q Consensus       548 ~L~l~  552 (582)
                      .+-+.
T Consensus       279 ~i~~~  283 (699)
T KOG3665|consen  279 QIAAL  283 (699)
T ss_pred             hhhhh
Confidence            66644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=7.8e-06  Score=85.59  Aligned_cols=127  Identities=18%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CccEEEcCCCCcc--chhHhh-cCCCCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984           46 DLQKLILAHNNIE--KLKEDL-RNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (582)
Q Consensus        46 ~l~~L~l~~~~i~--~~~~~~-~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  120 (582)
                      +|+.|+++|...-  ..+..+ ..+|+|+.|.+.+-.+.  +......++|+|.+||++++.++.+ .+++.+++|++|.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~  201 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS  201 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence            5555555554322  222222 24555555555554443  1122334455555555555555555 3455555555555


Q ss_pred             ccCCcCCcCC--cccccCCCCCeEEcCCCcCCCCc-------cccccCCCCcEEEccCCccc
Q 007984          121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLP-------EDLADCSKMSKLDVEGNKLT  173 (582)
Q Consensus       121 l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i~-------~~l~~~~~L~~L~l~~~~i~  173 (582)
                      +.+-.+..-.  ..+.++++|+.||++.......+       +.-..+|+|+.||.+++.+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            5544443211  23445556666665554333211       12233566666666655544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=5e-05  Score=73.16  Aligned_cols=73  Identities=14%  Similarity=0.282  Sum_probs=37.8

Q ss_pred             hcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCC-cCccCChhhhccCCccEEEccCC-cCCcCCcccccCCCCCe
Q 007984           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSD  141 (582)
Q Consensus        64 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~  141 (582)
                      +..+.+++.|++++|.+..+|.   --.+|++|.+++| .+..+|..+  .++|++|++++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            3445666666666666665551   1234666666654 344444433  245666666665 3434432      3455


Q ss_pred             EEcCCC
Q 007984          142 FKASNN  147 (582)
Q Consensus       142 L~l~~~  147 (582)
                      |++..+
T Consensus       117 L~L~~n  122 (426)
T PRK15386        117 LEIKGS  122 (426)
T ss_pred             EEeCCC
Confidence            555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=1.1e-05  Score=51.12  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=22.2

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l   83 (582)
                      +|++|+++++.|+.++..+.++++|+.|++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45666666666666655566666666666666665544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2.9e-05  Score=65.59  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             ccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhh-ccCCccEEEccCCc
Q 007984           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDCSSNQ  125 (582)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~  125 (582)
                      =+++++.+..+..+...=........+||+++.+..+ ..|..++.|..|.+++|.|+.+...+. .+++|..|.+.+|.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            3555555555444332111233444555555555443 344455555555555555555433332 24445555555554


Q ss_pred             CC
Q 007984          126 LK  127 (582)
Q Consensus       126 ~~  127 (582)
                      +.
T Consensus       100 i~  101 (233)
T KOG1644|consen  100 IQ  101 (233)
T ss_pred             hh
Confidence            44

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.31  E-value=7.9e-05  Score=65.94  Aligned_cols=85  Identities=26%  Similarity=0.293  Sum_probs=55.7

Q ss_pred             CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCC--cCc-cCChhhhccCCccEEEccCCcCCcCC--cccccCCCCC
Q 007984           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLS  140 (582)
Q Consensus        66 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~-~l~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~  140 (582)
                      .+..|+.+++.++.++++ ..|..+++|++|.++.|  .+. .++.-...+++|+++++++|++..+.  ..+..+.+|.
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            445666666667766654 45667888899999888  333 44444566788888888888877432  2344555666


Q ss_pred             eEEcCCCcCCC
Q 007984          141 DFKASNNCITS  151 (582)
Q Consensus       141 ~L~l~~~~~~~  151 (582)
                      +|++..|....
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            66666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=1.7e-05  Score=70.36  Aligned_cols=82  Identities=24%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             cCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCc-cccCCCCCcEEe
Q 007984          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILD  457 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~  457 (582)
                      +.+.+.|+..+|.+++|.- ...++.|++|.|+-|+|+.+.+  +..|++|++|++..|.|.++... .+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3467888999999988753 4678889999999999988765  78899999999999988876542 256777888888


Q ss_pred             CCCCcC
Q 007984          458 LSYNIA  463 (582)
Q Consensus       458 l~~n~l  463 (582)
                      |..|.-
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            877643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=2.1e-05  Score=69.82  Aligned_cols=79  Identities=25%  Similarity=0.299  Sum_probs=41.3

Q ss_pred             cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChh--hhccCCccEEEcc
Q 007984           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE--IGSATALVKFDCS  122 (582)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~l~  122 (582)
                      .++++|++=||.+..| ....+|+.|++|.|+-|+|+++ +.+..|.+|+.|.|..|.|.++.+-  +.++++|+.|++.
T Consensus        19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            3455555555555544 2344555555555555555554 4455555555555555555544322  3455555555555


Q ss_pred             CCc
Q 007984          123 SNQ  125 (582)
Q Consensus       123 ~~~  125 (582)
                      .|.
T Consensus        97 ENP   99 (388)
T KOG2123|consen   97 ENP   99 (388)
T ss_pred             cCC
Confidence            443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00038  Score=61.73  Aligned_cols=59  Identities=22%  Similarity=0.272  Sum_probs=24.3

Q ss_pred             CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC--Ccc-CCCccccCCCCCcEEeCCCCcCC
Q 007984          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP--LRQ-VPSDGFKDIPMLQILDLSYNIAS  464 (582)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--l~~-~~~~~~~~~~~L~~L~l~~n~l~  464 (582)
                      ..|+.+++.+.+++.+..  +..+|+|++|.++.|.  +.. +... ...+++|+++++++|++.
T Consensus        43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence            334444444444433322  3344555555555552  211 1111 223355555555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.00  E-value=0.00028  Score=73.01  Aligned_cols=16  Identities=25%  Similarity=0.262  Sum_probs=9.9

Q ss_pred             hcCCCCccEEeCCCCc
Q 007984          203 IGSLSRLIRLDLHQNR  218 (582)
Q Consensus       203 l~~~~~L~~L~l~~~~  218 (582)
                      ...++.++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            4456666666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.85  E-value=0.00056  Score=70.72  Aligned_cols=220  Identities=20%  Similarity=0.200  Sum_probs=122.7

Q ss_pred             HHHHHhhcCceecCCCC-CCCcchHHHhhhccccCCCccccccCccEEEcCCC--Cccc----hhHhhcCCCCCcEEEcC
Q 007984            4 ILKAARTSGSLNLSNRS-LRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN--NIEK----LKEDLRNLPLLTVLNVS   76 (582)
Q Consensus         4 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~i~~----~~~~~~~~~~L~~L~L~   76 (582)
                      ..+.++.++.+.+.+.. +.+-.  +.....         .+++|+.|+++++  .+..    .......+++|+.|+++
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~--~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  251 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDS--LDALAL---------KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS  251 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhh--HHHHHh---------hCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence            44456788888888774 33322  111111         2789999999873  1221    12345567899999999


Q ss_pred             CCC-Cccc-chhh-hCCCCCcEEecCCCc-Cc--cCChhhhccCCccEEEccCCcCC---cCCcccccCCCCCeEEcCCC
Q 007984           77 HNK-LSEL-PAAI-GELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN  147 (582)
Q Consensus        77 ~~~-~~~l-~~~~-~~~~~L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~  147 (582)
                      ++. ++.. -..+ ..|++|++|.+..|. ++  .+......+++|++|++++|...   .+.....++++++.+.+...
T Consensus       252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            988 5532 2233 348999999988776 55  33344567889999999988754   12223445666666554443


Q ss_pred             c----CC--------CCc------cccccCCCCcEEEccCCcccccc-hhhhcccccCcEEEccCCccCccchhhcCCCC
Q 007984          148 C----IT--------SLP------EDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETIGSLSR  208 (582)
Q Consensus       148 ~----~~--------~i~------~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~  208 (582)
                      .    +.        ...      -....+++++.+.+.++...+.. ...+.+|+.+. ..+..        .......
T Consensus       332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~--------~~~~~~~  402 (482)
T KOG1947|consen  332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL--------RLCRSDS  402 (482)
T ss_pred             CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH--------HhccCCc
Confidence            2    11        100      11455666666666665544333 23344555552 11111        1112223


Q ss_pred             ccEEeCCCCcCccCC--cCCcC-CCCCcEEEcCCCcCc
Q 007984          209 LIRLDLHQNRILSIP--SSISG-CCSLAEFYMGNNALS  243 (582)
Q Consensus       209 L~~L~l~~~~~~~~~--~~l~~-~~~L~~L~l~~~~i~  243 (582)
                      ++.|++.++......  ..... +..+..+.+.++...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            788888887644221  11111 566666666665433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.76  E-value=0.0053  Score=29.64  Aligned_cols=13  Identities=46%  Similarity=0.777  Sum_probs=4.1

Q ss_pred             CCEEeCCCCcCCc
Q 007984          522 LTELDLSDNNISA  534 (582)
Q Consensus       522 L~~L~l~~n~l~~  534 (582)
                      |++|++++|++++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            3444444444333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.74  E-value=0.0045  Score=32.36  Aligned_cols=17  Identities=47%  Similarity=0.788  Sum_probs=8.7

Q ss_pred             CCEEeCCCCcCCcCCCc
Q 007984          522 LTELDLSDNNISALPPE  538 (582)
Q Consensus       522 L~~L~l~~n~l~~l~~~  538 (582)
                      |++|++++|+++.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.10  E-value=0.015  Score=28.10  Aligned_cols=17  Identities=59%  Similarity=0.870  Sum_probs=11.5

Q ss_pred             CCCCEEecCCCcCCccc
Q 007984          497 QQLRILDLSQNSLQSIP  513 (582)
Q Consensus       497 ~~L~~L~l~~~~l~~l~  513 (582)
                      ++|++|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998876

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.08  E-value=0.018  Score=31.51  Aligned_cols=21  Identities=52%  Similarity=0.763  Sum_probs=9.9

Q ss_pred             CCCCEEeCCCCcCCcCCCccc
Q 007984          520 TSLTELDLSDNNISALPPELG  540 (582)
Q Consensus       520 ~~L~~L~l~~n~l~~l~~~~~  540 (582)
                      ++|++|++++|+|+.+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            344455555555554444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.08  E-value=0.018  Score=31.51  Aligned_cols=21  Identities=52%  Similarity=0.763  Sum_probs=9.9

Q ss_pred             CCCCEEeCCCCcCCcCCCccc
Q 007984          520 TSLTELDLSDNNISALPPELG  540 (582)
Q Consensus       520 ~~L~~L~l~~n~l~~l~~~~~  540 (582)
                      ++|++|++++|+|+.+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            344455555555554444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.68  E-value=0.015  Score=30.33  Aligned_cols=16  Identities=31%  Similarity=0.424  Sum_probs=7.2

Q ss_pred             ccEEEcCCCCccchhH
Q 007984           47 LQKLILAHNNIEKLKE   62 (582)
Q Consensus        47 l~~L~l~~~~i~~~~~   62 (582)
                      |++|++++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.57  E-value=0.00078  Score=67.71  Aligned_cols=174  Identities=28%  Similarity=0.342  Sum_probs=106.3

Q ss_pred             ccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc-----cchhhhCC-CCCcEEecCCCcCc-----cCChhh
Q 007984           47 LQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGEL-HMLKSLDVSFNSIM-----KIPDEI  110 (582)
Q Consensus        47 l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~-~~L~~L~l~~~~~~-----~l~~~~  110 (582)
                      +..+.+.+|.+.     .+-..+...+.|+.|+++++.+..     +...+... ..|++|++..|.++     .+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            556666666554     233456667777777777776661     12233332 44666666666655     234455


Q ss_pred             hccCCccEEEccCCcCC-----cCCcccc----cCCCCCeEEcCCCcCCC-----CccccccCCC-CcEEEccCCccccc
Q 007984          111 GSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTVL  175 (582)
Q Consensus       111 ~~~~~L~~L~l~~~~~~-----~l~~~~~----~~~~L~~L~l~~~~~~~-----i~~~l~~~~~-L~~L~l~~~~i~~~  175 (582)
                      .....++.++++.|.+.     .++..+.    ...++++|.+..|.++.     +...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            55667777777777653     1122222    46677788888877662     2233555555 66788888877654


Q ss_pred             chh----hhccc-ccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCc
Q 007984          176 SNN----LIASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL  220 (582)
Q Consensus       176 ~~~----~~~~~-~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~  220 (582)
                      ...    .+..+ ..++++++..|.+..     +...+..++.++.+.+..+.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            222    13333 567888888888854     3355677789999999998876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.54  E-value=0.0011  Score=57.68  Aligned_cols=87  Identities=22%  Similarity=0.256  Sum_probs=50.6

Q ss_pred             hhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeE
Q 007984           63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF  142 (582)
Q Consensus        63 ~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  142 (582)
                      .+..+...+.||++.+.+..+...|+-+..|.-|+++.+.+..+|..+.....+.++....|..+..|.+++..+.++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            34455555556665555554444555555555556666666556666666666666666666666666666666666666


Q ss_pred             EcCCCcC
Q 007984          143 KASNNCI  149 (582)
Q Consensus       143 ~l~~~~~  149 (582)
                      +..++.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            6665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.45  E-value=0.00088  Score=67.36  Aligned_cols=180  Identities=24%  Similarity=0.262  Sum_probs=119.1

Q ss_pred             cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccc-----hhHhhcCC-CCCcEEEcCCCCCc---
Q 007984           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS---   81 (582)
Q Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-----~~~~~~~~-~~L~~L~L~~~~~~---   81 (582)
                      +.++++.++.++.-+......        .+.....|..|+++++.+..     +-..+... ..+++|++..|.++   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence            677888888877443333222        22337788889999988772     22334443 56777888888777   


Q ss_pred             --ccchhhhCCCCCcEEecCCCcCc-----cCChhhh----ccCCccEEEccCCcCCc-----CCcccccCCC-CCeEEc
Q 007984           82 --ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFKA  144 (582)
Q Consensus        82 --~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~----~~~~L~~L~l~~~~~~~-----l~~~~~~~~~-L~~L~l  144 (582)
                        .+.+.+....+++.++++.|.+.     .++..+.    ...++++|++++|.++.     +...+...++ +..+++
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL  240 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence              34556777888999999988764     1233333    46778899999888762     1223444455 667888


Q ss_pred             CCCcCCCC-----ccccccC-CCCcEEEccCCcccccchh----hhcccccCcEEEccCCccCc
Q 007984          145 SNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNG  198 (582)
Q Consensus       145 ~~~~~~~i-----~~~l~~~-~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~  198 (582)
                      ..|.+.+.     .+.+... .+++.+++..|.++..+..    .+..+..++.+.+..|.+..
T Consensus       241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            88877633     3345555 6788999999988754433    34556788899999888754

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.10  E-value=0.041  Score=30.07  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             cccceeeccCCCCCcchHHHhc
Q 007984          544 PSLQALRLDGNPLRSIRRTILD  565 (582)
Q Consensus       544 ~~L~~L~l~~~~~~~~~~~~~~  565 (582)
                      ++|+.|++++|.+..+++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            6899999999999999999987

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.10  E-value=0.041  Score=30.07  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             cccceeeccCCCCCcchHHHhc
Q 007984          544 PSLQALRLDGNPLRSIRRTILD  565 (582)
Q Consensus       544 ~~L~~L~l~~~~~~~~~~~~~~  565 (582)
                      ++|+.|++++|.+..+++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            6899999999999999999987

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.95  E-value=0.0029  Score=55.01  Aligned_cols=84  Identities=17%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      ....+.||++.+.+..+...|.-++.+..|+++.+.+..+|..+.....+..+++..|...+.|.++...+++++++..+
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence            55677777777776666556666667777777777777777777777777777777777777777777777777777776


Q ss_pred             CcCC
Q 007984          124 NQLK  127 (582)
Q Consensus       124 ~~~~  127 (582)
                      +.+.
T Consensus       121 ~~~~  124 (326)
T KOG0473|consen  121 TEFF  124 (326)
T ss_pred             Ccch
Confidence            6543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.52  E-value=0.032  Score=47.82  Aligned_cols=60  Identities=23%  Similarity=0.257  Sum_probs=23.7

Q ss_pred             cCCCCCCEEEcccC-cCCCCChHHhhC-CCCCCEeeCCCCC-CccCCCccccCCCCCcEEeCC
Q 007984          400 SSCASLQTLILSRN-KIKDWPDAILTS-LSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLS  459 (582)
Q Consensus       400 ~~~~~L~~L~l~~~-~l~~~~~~~l~~-l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~  459 (582)
                      ..++.++.|.+.+| .+.++....+++ .++|+.|++++|+ |++-.-.++..+++|+.|.+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            34444444444444 233333322222 3445555555443 333222233334444444433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.64  E-value=0.15  Score=27.11  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=10.8

Q ss_pred             ccccceeeccCCCCCcchHH
Q 007984          543 EPSLQALRLDGNPLRSIRRT  562 (582)
Q Consensus       543 ~~~L~~L~l~~~~~~~~~~~  562 (582)
                      +++|++|+|++|++++....
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHH
Confidence            36777777777776654433

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.95  E-value=0.3  Score=26.44  Aligned_cols=19  Identities=42%  Similarity=0.712  Sum_probs=14.6

Q ss_pred             CCCCEEeCCCCcCCcCCCc
Q 007984          520 TSLTELDLSDNNISALPPE  538 (582)
Q Consensus       520 ~~L~~L~l~~n~l~~l~~~  538 (582)
                      ++|++|++++|+++++|..
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        2 PSLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             cccceeecCCCccccCccc
Confidence            4678888888888888763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.93  E-value=0.13  Score=44.17  Aligned_cols=81  Identities=23%  Similarity=0.168  Sum_probs=57.7

Q ss_pred             ccccEEEecCCCCcc-CChhhhccCCccEEEcCCCc-CCc--CCccccCCCCCCEEEcccC-cCCCCChHHhhCCCCCCE
Q 007984          357 VTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSC  431 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~-i~~~~~~~~~L~~L~l~~~~-l~~--l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~  431 (582)
                      ..++.++-+++.+.. --+.+..++.++.+.+.+|. +.+  +...-+-.++|+.|++++| +|++.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            345667777766552 22444557888888888884 333  1111135689999999998 899998888999999999


Q ss_pred             eeCCCC
Q 007984          432 LKLDNN  437 (582)
Q Consensus       432 L~l~~~  437 (582)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            999764

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=85.32  E-value=0.78  Score=45.92  Aligned_cols=80  Identities=26%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             ccCCCCEEecCCCcCCccc---hhhcCCCCCCEEeCCCC--cCCcCCCcc-cccccccceeeccCCCCCcchHHHhccch
Q 007984          495 RLQQLRILDLSQNSLQSIP---EGFKNLTSLTELDLSDN--NISALPPEL-GLLEPSLQALRLDGNPLRSIRRTILDRGT  568 (582)
Q Consensus       495 ~~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~n--~l~~l~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  568 (582)
                      +.+.+..+++++|++..+.   ..-+.-|.|++|+|++|  .+...+... ..+ ..|++|-+.|||+.+    .|. ..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~----tf~-~~  289 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT----TFS-DR  289 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc----chh-hh
Confidence            5677888889999777552   23456789999999999  555433322 444 789999999999864    222 23


Q ss_pred             HHHHHHHHhcCC
Q 007984          569 KAVLKYLKDKIP  580 (582)
Q Consensus       569 ~~~~~~~~~~~~  580 (582)
                      .+.+.++++.||
T Consensus       290 s~yv~~i~~~FP  301 (585)
T KOG3763|consen  290 SEYVSAIRELFP  301 (585)
T ss_pred             HHHHHHHHHhcc
Confidence            344457777777

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.05  E-value=1.4  Score=24.04  Aligned_cols=16  Identities=56%  Similarity=0.787  Sum_probs=10.1

Q ss_pred             CCCCEEeCCCCcCCcC
Q 007984          520 TSLTELDLSDNNISAL  535 (582)
Q Consensus       520 ~~L~~L~l~~n~l~~l  535 (582)
                      ++|++|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4566666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	582
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-05
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		2e-06
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		4e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		4e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		4e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		4e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		4e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		5e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           LD+   ++  +S N I  +  LT L  + N L  +P  I +LS L  LDL  NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  C  L  FY  +N ++ LP E G L  L  L +  N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 46  DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           D   L L +N+I +L K+D + L  L  L + +NK+S++   A   L  L+ L +S N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
           ++IP  + S+  LV+     N+++++P  +   L N++  +   N +  +       D  
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
           K++ L +   KLT +  +L  +   L EL    N +  +  E +   S+L RL L  N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             I   S+S   +L E ++ NN LS +PA L  L  L  + LH+N + +  V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 36/252 (14%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 392
           N  +    + + L  + + +   +K+L L+   LS++PS+ +    +TKL L   + N +
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 393 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           Q LP  +     +L+TL ++ NK++  P  +            D N L+ +P   F  + 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQ 510
            L  L L YN + SLP+   F  L  L+EL L                        N L+
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLY----------------------NNQLK 170
Query: 511 SIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTK 569
            +PEG F  LT L  L L +N +              + L+L  NP       I+     
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII----- 225
Query: 570 AVLKYLKDKIPE 581
            + K+LK K  E
Sbjct: 226 YMAKWLKKKADE 237

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDLSYN + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           ++L L                       QN L+S+P+G F  LTSL  + L DN
Sbjct: 184 KDLRLY----------------------QNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTXXXXXXXXXXXX 503
             K++  L  L L+ N + SLP N  F  L +L+EL L   QL+  P             
Sbjct: 80  ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 504 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 561
             + N LQS+P+G F  LT+LTELDLS N + +            + LRL  N L+S+  
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 562 TILDRGTKAVLKYLKD 577
            + DR T     +L D
Sbjct: 199 GVFDRLTSLQYIWLHD 214

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L++ +NN++ L  DL   PLL  L VS+N+L +LP  +     LK +DV  NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           PD   S   +      +NQL+ELP  L     L+   A NN +  LP DL        L 
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
           +E     V  NN+      + +   LT + A  NLL  +P+   SL  L   D +   + 
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            +P S++        + G   LS LP        L  L+  SN+++  C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L+VS N+L+ LPA   EL  L + +    S+  +P      + L +   S NQL 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   A  S + +L V GN+LT L            
Sbjct: 195 SLPTLPS---ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
                      +P      S L  L +  NR+ S+P   SG  SL+ +    N L+ LP 
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
            L  LS   T++L  N L E  ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           + P E      +V+  CS+  LK LP  + R  ++++     N  T +P++L++   ++ 
Sbjct: 3   RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           +D+  N+++ LSN   ++ T L  LI S N L  + P T   L  L  L LH N I  +P
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
             + +   +L+   +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS--SN 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 125 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 175
Query: 125 QLKELPSS---------LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           +LK L  S         + RC+NL     S+N  ++    L DCS +  LD+ GNKL+  
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SLA 233
            +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L 
Sbjct: 236 FSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 234 EFYM-GNNALSALPAELG 250
              + GN+   A+P   G
Sbjct: 295 GLDLSGNHFYGAVPPFFG 312

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS--SN 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 178
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 297 TGLDLSGNHFYGAVPPFFG 315

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           + N++ S+P  +     +L    + NN L +LP     KL++L  L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDL  N + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           ++L L                      + N L+S+P+G F  LTSLT + L +N
Sbjct: 184 KQLSL----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
           ++ + ++  +TS+P  +   S  ++L++E NKL  L + +    T LT+L  S+N +  +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
           P+ +   L++L  L LH+N++ S+P+ +      L E  +  N L ++P     +L+ L 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSNQLKEYC 269
            + LH+N     C
Sbjct: 128 KIWLHTNPWDCSC 140

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
           +E     + L ++ T +  ++  L LE   L ++P  +++   ++TKL LS+N IQ LP 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 398 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 456
                   L  L L  NK++  P+ +            D N L+ VP   F  +  LQ +
Sbjct: 70  GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 457 DLSYN 461
            L  N
Sbjct: 130 WLHTN 134

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
           TS+P  +   ++ + LD+E N L  L N +    T LT+L    N L  +P  +   L+ 
Sbjct: 20  TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           L  L+L  N++ S+P+ +      L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 155
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 209
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIA 181
           NQ+ +L P      +NL +    +N + +LP  + D  ++++ LD+  N+LTVL + +  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN 240
               L EL    N L  +P  I  L+ L  L L QN++ SIP  +     SL   Y+  N
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 429
           +A PS+   +G  T +D        +P  + + A  Q L L  N+I      +       
Sbjct: 11  AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 430 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLRE 488
                 +N L  +P   F  +  L +LDL  N  ++  +  F  L HL+EL++   +L E
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 489 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            P               QN L+SIP G F  L+SLT   L  N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 62  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 119
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 120 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 175 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 232
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 233 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 263
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 264 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 310
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  + NK+ D
Sbjct: 311 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 344

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 58  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 154
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 378 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 436
           EA  +   DLS++ I  L     S    L+ L L++N+I    D                
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXXXX 496
           N L  + S  F+++  L++LDLSYN      +  F  LP+L+EL L              
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL-------------- 378
Query: 497 XXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
                     N L+S+P+G F  LTSL ++ L  N
Sbjct: 379 --------DTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 120
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 121 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 176 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 234 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 264
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 265 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 311
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 72/185 (38%), Gaps = 29/185 (15%)
Query: 385 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 443
           L LSRN I+ +     +  A+L TL L  N++   P+               NNP+  +P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 444 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXX 500
           S  F  IP L+ LDL     ++ + E   F  L +L+ L L M  LRE P          
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIP---------- 201
Query: 501 XXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIR 560
                             L  L ELDLS N++SA            Q L +  + ++ I 
Sbjct: 202 --------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 561 RTILD 565
           R   D
Sbjct: 248 RNAFD 252

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
                               + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 130 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
                               + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 130 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 41  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 99  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 153
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
                               + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 154 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 50/189 (26%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 136
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLR 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 137 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 546
                             QN +  + P  F++L  L  L L  NN+SA            
Sbjct: 185 ------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 226
Query: 547 QALRLDGNP 555
           Q LRL+ NP
Sbjct: 227 QYLRLNDNP 235

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 19  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ L  N+ASL EN P   L  L+EL +  
Sbjct: 77  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
                               + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 134 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 423
           E +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D   
Sbjct: 16  EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 424 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 482
                        NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +
Sbjct: 74  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 483 RMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
                                 + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 133 ----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 50/189 (26%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLR 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 546
                             QN +  + P  F++L  L  L L  NN+SA            
Sbjct: 186 ------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 547 QALRLDGNP 555
           Q LRL+ NP
Sbjct: 228 QYLRLNDNP 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	582
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-70
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-70
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-37
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-33
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-34
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-20
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-04

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  241 bits (616), Expect = 4e-70
 Identities = 94/577 (16%), Positives = 181/577 (31%), Gaps = 91/577 (15%)

Query: 47  LQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  L LA    +    + +  L  L VL+   +  +      G+  +   +       ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 106 I---PDEIGSATALVKFDCSSNQLKELP------SSLGRCLNLSDFKASNNCITSLPEDL 156
           +      +     L   D   + +   P            L  +      N IT + + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+  +    +  T  +  +                      +  +L  L  ++L+ 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA----KQYENEELSWSNLKDLTDVELYN 500

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALS----------ALPAELGKLSKLGTLDLHSNQL 265
              +  +P  +     L    +  N              L  +     K+    +  N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 266 KEYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +E+   A   ++  L +LD  +N +  L    G    L  L L  N +  +         
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--- 616

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-- 380
                 +                                L      L  IP+        
Sbjct: 617 --FTDQVE------------------------------GLGFSHNKLKYIPNIFNAKSVY 644

Query: 381 EITKLDLSRNSIQELPPELSS------CASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +  +D S N I      +S         +  T+ LS N+I+ +P  +  + S +S + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 435 DNNPLRQVPSDGFKDIP-------MLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-Q 485
            NN +  +P +  K          +L  +DL +N + SL ++   ++LP+L  + +    
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 486 LREAPTDILRLQQLRILDLSQNS-------LQSIPEGFKNLTSLTELDLSDNNISALPPE 538
               PT  L   QL+   +           L+  P G     SL +L +  N+I  +  +
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
           L    P L  L +  NP  SI  T +    +A +  L
Sbjct: 825 LT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (468), Expect = 7e-50
 Identities = 71/458 (15%), Positives = 145/458 (31%), Gaps = 81/458 (17%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSH-NKLSELPAAIGELHMLKSLDVSFNSI-- 103
                      E  +    NL  LT + + +   +++LP  + +L  L+SL+++ N    
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 104 --------MKIPDEIGSATALVKFDCSSNQLKELPSS--LGRCLNLSDFKASNNCITSLP 153
                    ++ D+  +   +  F    N L+E P+S  L + + L      +N +  L 
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589

Query: 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLIR 211
                  K++ L ++ N++  +  +  A    +  L  S N L  +P      S+  +  
Sbjct: 590 A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 212 LDLHQNRILSIPSSISG------CCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQ 264
           +D   N+I S   +IS         + +   +  N +   P E     S + T+ L +N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           +                +  NSL            L  + L  N L +L         P 
Sbjct: 709 MTS--------------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                    + +     S+ P++   + ++  
Sbjct: 755 L----------------------------------SNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 385 LDLSRNSI-------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
             +            ++ P  +++C SL  L +  N I+   + +   L  L    + +N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADN 837

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           P   +            +  L Y+            + 
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (366), Expect = 1e-36
 Identities = 55/316 (17%), Positives = 109/316 (34%), Gaps = 37/316 (11%)

Query: 276 RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R++ L L+     G +P  IG++T L+ L    +          +      +   R    
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                +     +  +     LS   ++       +  I  +   + + T++    N I  
Sbjct: 384 RMHYKKMFLDYDQRLN----LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAI-------------------LTSLSSLSCLKLD 435
           +   +     LQ +  + +       A+                    ++L  L+ ++L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN--------PPFSSLPHLQELYLRM-Q 485
           N P      D   D+P LQ L+++ N   S  +             + P +Q  Y+    
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 486 LRE--APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE 543
           L E  A   + ++ +L +LD   N ++ +   F     LT+L L  N I  +P +     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 544 PSLQALRLDGNPLRSI 559
             ++ L    N L+ I
Sbjct: 619 DQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 23/190 (12%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
              ++   G +T L L+    +  +P  +     L+ L    +              +  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 431 CLKLDNNPLRQVPSDGFKDIP-MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREA 489
             +   + +R      F D    L + DL  +  ++  NP    +     + L       
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD--AINRNPEMKPIKKDSRISL------- 425

Query: 490 PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 549
                   +   +    N +  I +  + LT L  +  +++  +     +   + +    
Sbjct: 426 --------KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

Query: 550 RLDGNPLRSI 559
           +   N   S 
Sbjct: 478 KQYENEELSW 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  236 bits (603), Expect = 4e-70
 Identities = 104/582 (17%), Positives = 194/582 (33%), Gaps = 65/582 (11%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +    ++ L  VP+++  +                + + L+ N ++ L      N  
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSS---------------TKNIDLSFNPLKILKSYSFSNFS 56

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQL 126
            L  L++S  ++  +   A   LH L +L ++ N I           T+L        +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 127 KELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L S  +G+ + L     ++N I S  LP   ++ + +  +D+  N +  ++ N +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE--- 234
                    L  S N ++ + +      +L  L L  N   S  + + +     L     
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 ---FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDLSNNS 286
               +     L       +  L  +   +       ++  +     C   +S + L+  S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +  L   + K    + L +    L+   +  L        LK L   + +   S      
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNKGSISFKKVAL 349

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK---LDLSRNSIQELPPELSSC 402
             L             L L    LS      +          LDLS N    +       
Sbjct: 350 PSL-----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 403 ASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             LQ L    + +K     +   SL  L  L +     +      F  +  L  L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 462 -IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 517
                  +  F++  +L  L L   QL +    +   L +L++L++S N+L  +    + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 518 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
            L SL+ LD S N I      L     SL    L  N +  I
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  190 bits (485), Expect = 3e-53
 Identities = 87/467 (18%), Positives = 156/467 (33%), Gaps = 53/467 (11%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL 175
           + + C   +L ++P  +    +  +   S N +  L     ++ S++  LD+   ++  +
Sbjct: 14  ITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 176 SNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +        L+ LI + N +    P +   L+ L  L   + ++ S+ S  I    +L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 234 EFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQ------LRLSVLDLSNN 285
           +  + +N +    LPA    L+ L  +DL  N ++   V   Q           LD+S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR-SRLPENEDSEASTT 344
            +  +  +  +   L +L L GN      SS +       L  L   RL   E  +    
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFN----SSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCA 403
           +    ++   L   + +                         L+  +            A
Sbjct: 248 EIFEPSIMEGLCDVTIDE----------------------FRLTYTNDFSDDIVKFHCLA 285

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           ++  + L+   IK   D  +        L +    L+Q P     D+P L+ L L+ N  
Sbjct: 286 NVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMN-- 338

Query: 464 SLPENPPFSSLPHLQELYLR----MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNL 519
               +    +LP L  L L               L    LR LDLS N    +   F  L
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 520 TSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILD 565
             L  LD   + +  +      L    L  L +     +     I  
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (298), Expect = 3e-28
 Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 14/211 (6%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
            V +         LS +P +I        +DLS N ++ L     S+ + LQ L LSR +
Sbjct: 10  VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           I+   D     L  LS L L  NP++      F  +  L+ L      +ASL    P   
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF-PIGQ 126

Query: 474 LPHLQELYL---RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----EL 525
           L  L++L +    +   + P     L  L  +DLS N +Q+I     + L         L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 526 DLSDNNISALPPELGLLEPSLQALRLDGNPL 556
           D+S N I  +  +       L  L L GN  
Sbjct: 187 DMSLNPIDFIQDQA-FQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (263), Expect = 6e-24
 Identities = 56/312 (17%), Positives = 97/312 (31%), Gaps = 68/312 (21%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +        +  LS +P +I   ++ + + L+ NPL+ L+S   +         L+  
Sbjct: 9   EVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSN-----FSELQ-- 59

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 60  ----------------------------WLDLSRCEIETIE------------------- 72

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                       L  LIL+ N I+ +     + L+SL  L      L  + S     +  
Sbjct: 73  ---DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRL-----QQLRILDLS 505
           L+ L++++N I S      FS+L +L  + L    ++    + L+      Q    LD+S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 506 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRR-TI 563
            N +  I +       L EL L  N  S+   +  L     L   RL     +  R   I
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 564 LDRGTKAVLKYL 575
            +      L  +
Sbjct: 250 FEPSIMEGLCDV 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (586), Expect = 5e-67
 Identities = 127/561 (22%), Positives = 223/561 (39%), Gaps = 57/561 (10%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           V  +    +H  + ++ +DL     +TVLN++HN+L  L  A       L SLDV FN+I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 104 MKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCS 160
            K+ P+       L   +   N+L +L   +   C NL++    +N I  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE---TIGSLSRLIRLDLHQN 217
            +  LD+  N L+            L EL+ S N +  +      I + S L +L+L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 218 RILSI-PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCVEA 272
           +I    P        L   ++ N  L     E        + +  L L ++QL       
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 273 ----CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                   L++LDLS N+L+ +  +    +  L    L  N ++ L S  ++G     ++
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVR 299

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLD 386
           YL                         L  +  + S+   +L  I          +  L+
Sbjct: 300 YLN------------------------LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRN--KIKDWPDAILTSL--SSLSCLKLDNNPLRQ 441
           +  N I  +     +   +L+ L LS +   ++   +    SL  S L  L L  N + +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQ 498
           + SD F  +  L++LDL  N I        +  L ++ E+YL   +  +   +    +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 499 LRILDLSQNSLQSIPEG---FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
           L+ L L + +L+++      F+ L +LT LDLS+NNI+ +  ++      L+ L L  N 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 556 LRSIRRTILDRGTKAVLKYLK 576
           L  + +     G    LK L 
Sbjct: 516 LARLWKHANPGGPIYFLKGLS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  220 bits (563), Expect = 9e-64
 Identities = 123/556 (22%), Positives = 215/556 (38%), Gaps = 55/556 (9%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM 104
           L+ L L HN + +L +        LT L++  N + ++      +   L +LD+S N + 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 105 KIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA---SNNCITSL-PEDLADC 159
                       L +   S+N+++ L S        S  K    S+N I    P      
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 160 SKMSKLDVEGNKLTVLSNNLIA---SWTMLTELIASKNLLNGMPETIGS---LSRLIRLD 213
            ++  L +   +L       +    + T +  L  S + L+    T       + L  LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 214 LHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 271
           L  N +  +   S +    L  F++  N +  L    L  L  +  L+L  +  K+    
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 272 -----------ACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL--RTLRSSL 317
                           L  L++ +N + G+   +   +  L+ L L+ +    RTL +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSE 375
                 + L  L   L +N+ S     + D  +    L    + L L    +       E
Sbjct: 375 FVSLAHSPLHILN--LTKNKIS---KIESDAFSWLGHL----EVLDLGLNEIGQELTGQE 425

Query: 376 IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSLSSLSCL 432
                 I ++ LS N   +L     +   SLQ L+L R  +K+   +      L +L+ L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN-------PPFSSLPHLQELYLR- 483
            L NN +  +  D  + +  L+ILDL +N +A L ++            L HL  L L  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 484 MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE-LG 540
               E P ++ + L +L+I+DL  N+L ++P   F N  SL  L+L  N I+++  +  G
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 541 LLEPSLQALRLDGNPL 556
               +L  L +  NP 
Sbjct: 606 PAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  215 bits (549), Expect = 1e-61
 Identities = 129/612 (21%), Positives = 231/612 (37%), Gaps = 100/612 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            LNL++  LR +P   +  +              L  L +  N I KL+ +  + LP+L 
Sbjct: 29  VLNLTHNQLRRLPAANFTRY------------SQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL 129
           VLN+ HN+LS+L          L  L +  NSI KI  +       L+  D S N L   
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 130 -PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL---DVEGNKLTVLSNNLIASWTM 185
              +  +  NL +   SNN I +L  +  D    S L   ++  N++   S     +   
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 186 LTELIASKNLLNG-MPETIG---SLSRLIRLDLHQNRILSIPSSISGCC---SLAEFYMG 238
           L  L  +   L   + E +    + + +  L L  +++ +  ++        +L    + 
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 239 NNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN-------- 285
            N L+ +       L +L    L  N ++   + +  L     +  L+L  +        
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 286 -SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
            SL  +       +  L  L +  N +  ++S++  G     L  L+             
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----LINLK------------- 356

Query: 344 TKEDLITMATRLSVTSKELSLEG--MNLSAIPSEIWEAGEITKL---DLSRNSIQELPPE 398
                             LSL     +L  + +E + +   + L   +L++N I ++  +
Sbjct: 357 -----------------YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 399 -LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             S    L+ L L  N+I           L ++  + L  N   Q+  + F  +P LQ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 457 DLSYN-IASLPENP-PFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSI 512
            L    + ++  +P PF  L +L  L L    +     D+L  L++L ILDL  N+L  +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 513 PEG---------FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI 563
            +           K L+ L  L+L  N    +P E+      L+ + L  N L ++  ++
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 564 LDRGTKAVLKYL 575
            +      LK L
Sbjct: 580 FNNQVS--LKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (439), Expect = 2e-46
 Identities = 103/538 (19%), Positives = 191/538 (35%), Gaps = 60/538 (11%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPL--LTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS 102
           LQ+L+L++N I+ L  E+L       L  L +S N++ E  P     +  L  L ++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 103 IMK-IPDEIGSA---TALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPED 155
           +   + +++      T++     S++QL    ++    L   NL+    S N +  +  D
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 156 -LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM----------PETIG 204
             A   ++    +E N +  L ++ +     +  L   ++                 +  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 205 SLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLG-----TL 258
            L  L  L++  N I  I  +  +G  +L    + N+  S           L       L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR 314
           +L  N++ +   +A      L VLDL  N +       E   +  + ++ L+ N    L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
            +         L+ L   L          +          L      L L   N++ I  
Sbjct: 447 RNSFALVP--SLQRLM--LRRVALKN-VDSSPSPFQPLRNL----TILDLSNNNIANIND 497

Query: 375 EIWEA-GEITKLDLSRNSIQELPPE---------LSSCASLQTLILSRNKIKDWPDAILT 424
           ++ E   ++  LDL  N++  L            L   + L  L L  N   + P  +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  L  + L  N L  +P+  F +   L+ L+L  N I S+ +     +  +L EL +R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 484 M-------QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
                   +      + +      I +LS + L + P  +     +   D S    SA
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTSSCKDSA 674

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 5e-31
 Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 49/304 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C +   V D S+  L+ +P ++   T +  L LT N LR L ++            L   
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----YSQLT-- 52

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L +    +S +  E+ +    +  L+L  N 
Sbjct: 53  ----------------------------SLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           + +L  +  + C +L  L L  N I+   +       +L  L L +N L          +
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 451 PMLQILDLSYN-IASLPENP-PFSSLPHLQELYLRM-QLRE-APTDILRLQQLRILDLSQ 506
             LQ L LS N I +L        +   L++L L   Q++E +P     + +L  L L+ 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 507 NSLQ-SIPEGFK---NLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIR 560
             L  S+ E        TS+  L LS++ +S        GL   +L  L L  N L  + 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 561 RTIL 564
               
Sbjct: 265 NDSF 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  226 bits (579), Expect = 1e-66
 Identities = 108/574 (18%), Positives = 200/574 (34%), Gaps = 52/574 (9%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNL 67
             + + N  N  L ++P  +  +                + L  + N +  +       L
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNS---------------TECLEFSFNVLPTIQNTTFSRL 56

Query: 68  PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             LT L+++  ++  +        H L +L ++ N ++ + +       AL         
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 126 LKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
           +  +    L     L      +N I+S+         K+  LD + N +  LS   ++S 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 184 TMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC--SLAEFYMG 238
              T   L  + N + G+       +    L+    + L  I   +      SL      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 239 NNALSALPAEL---GKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPE 293
           +     +   +        + +++L  +           C   L  LDL+   LS LP  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +  ++TL+KL+L+ N    L     +      L +L  +         +   E+L  +  
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENL-- 352

Query: 354 RLSVTSKELSLEGMNLSAIPS---EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLI 409
                 +EL L   ++        ++     +  L+LS N    L  E    C  L+ L 
Sbjct: 353 ------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 410 LSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
           L+  ++K     +   +L  L  L L ++ L       F  +P LQ L+L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 468 NPP--FSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSL 522
                  +L  L+ L L    L          L+ +  +DLS N L S       +L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 523 TELDLSDNNISALPPELGLLEPSLQALRLDGNPL 556
             L+L+ N+IS + P L  +    + + L  NPL
Sbjct: 527 Y-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  170 bits (434), Expect = 3e-46
 Identities = 94/513 (18%), Positives = 170/513 (33%), Gaps = 65/513 (12%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLK--SLDVSFNS 102
           L+ L L  N+I  +K         L VL+  +N +  L    +  L      SL+++ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 103 IMKIPDEIGSATALVKFDCSSNQLKELP---SSLGRCLNLSDFKASNNCITSLPED-LAD 158
           I  I      +      +    Q   +           +L      +     +       
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
             +MS   ++++ +    +S+N    ++ L EL  +   L+ +P  +  LS L +L L  
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 217 NRILSIPS-SISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEAC 273
           N+  ++   S S   SL    +  N          L  L  L  LDL  + ++       
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 274 QLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           QLR    L  L+LS N    L  E   +   L  L L    L+   +         L   
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL--- 427

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDL 387
                                          K L+L    L     ++++    +  L+L
Sbjct: 428 -------------------------------KVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 388 SRNSIQELPPE----LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
             N   +   +    L +   L+ L+LS   +        TSL  ++ + L +N L    
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 444 SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRI 501
            +    +  +  L+L+ N I+ +  +     L   + + LR   L       +    L  
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPS-LLPILSQQRTINLRQNPLDCTC-SNIYF--LEW 571

Query: 502 LDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 533
              +   L+   +   +N   L  + LSD  +S
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (402), Expect = 7e-42
 Identities = 80/442 (18%), Positives = 137/442 (30%), Gaps = 68/442 (15%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PET 202
           +   CI        +C            L  +   L  S      L  S N+L  +   T
Sbjct: 4   SDQKCIEKEVNKTYNCE--------NLGLNEIPGTLPNS---TECLEFSFNVLPTIQNTT 52

Query: 203 IGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL 260
              L  L  LDL + +I  I   +      L    +  N L  +    L     L  L  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 261 HSNQLKEYCVEACQL----RLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRS 315
               +    ++   L     L  L L +N +S +  P+      L+ L    N +  L  
Sbjct: 113 IQTGISS--IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
             ++                                      T+  L+L G +++ I   
Sbjct: 171 EDMSSLQ---------------------------------QATNLSLNLNGNDIAGIEPG 197

Query: 376 IWEAGEITKLDLSRNSIQELPPE---LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++     L+        +  +    S+  SL          +D   A+   L  +S  
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 433 KLD--NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE 488
            ++   +    + S+ F     LQ LDL+   ++ LP       L  L++L L   +   
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFEN 315

Query: 489 APTDILR-LQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPPELGLLE-- 543
                      L  L +  N+ +        +NL +L ELDLS ++I         L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 544 PSLQALRLDGNPLRSIRRTILD 565
             LQ+L L  N   S++     
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFK 397

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 1e-27
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 8/224 (3%)

Query: 360 KELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD 417
           + L      L  I +        +T LDL+R  I  +  +   S   L TL+L+ N +  
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
             +  L+   +L  L      +  +      +   L+ L L  N  S  + P       L
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 478 QELYLRM-QLREAPTDILR-LQQLRI--LDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533
           + L  +   +     + +  LQQ     L+L+ N +  I  G  +      L+       
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 534 ALPPE--LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
            +  +        SL     +      I   + +   +  ++ +
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (570), Expect = 5e-65
 Identities = 90/562 (16%), Positives = 189/562 (33%), Gaps = 65/562 (11%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSF 100
           +  L L       ++ + +  L  L VL +  +          P  I      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 101 NSIMK-IPDEIG--SATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDL 156
               K   D       + L+K   +S+   K +  S    L  +     +N IT + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+ +  +  +     +                            +L  L  ++++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALSALP---------AELGKLSKLGTLDLHSNQLK 266
              L  +P+ +     +    +  N   +           A+     K+  + +  N LK
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 267 EYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + VE    +++ L +L+   N L G  P  G    L  L L  N +  + ++       
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE- 377

Query: 324 ALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELS-LEGMNLSAIPSEI 376
             ++ L         +P   D++        +++ + +  +  E+  ++G N   +    
Sbjct: 378 -QVENLSFAHNKLKYIPNIFDAK-------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTS-------LSS 428
           ++   ++ ++LS N I + P E  S+ + L ++ L  N + + P   L            
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 429 LSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQL 486
           L+ + L  N L ++  D     +P L  +DLSYN  +  P      +   L+   +R Q 
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQR 547

Query: 487 REA--------PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
                      P  I     L  L +  N ++ + E      +++ LD+ DN   ++   
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 539 LGLLEPSLQALRLDGNPLRSIR 560
                       L  +  + IR
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  185 bits (472), Expect = 3e-51
 Identities = 66/511 (12%), Positives = 155/511 (30%), Gaps = 99/511 (19%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L +   +T L++     S  +P AIG+L  L+ L +  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE------------------K 118

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED---LADCSKMSKLDVEGNKLTVLSNNL 179
            N+    P  +   ++    +           D     D S + K  +  +         
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                  T++    N +  + + +  L++L +  +  +  ++     +     +E+    
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY---A 235

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                   +   L  L  +++                      +  +L+ LP  +  +  
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEV---------------------YNCPNLTKLPTFLKALPE 274

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           ++ + +  N   +      +    A                                   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK---------------------------I 307

Query: 360 KELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           + + +   NL    + + + +  ++  L+   N ++   P   S   L +L L+ N+I +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
            P         +  L   +N L+ +P+    K + ++  +D SYN           S+  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN--------EIGSVDG 419

Query: 477 LQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISAL 535
                             +   +  ++LS N +   P E F   + L+ ++L  N ++ +
Sbjct: 420 K-------NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 536 PPELGLLEP-------SLQALRLDGNPLRSI 559
           P      E         L ++ L  N L  +
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (359), Expect = 4e-36
 Identities = 66/424 (15%), Positives = 141/424 (33%), Gaps = 78/424 (18%)

Query: 186 LTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGN 239
           +T L       +G +P+ IG L+ L  L L  +       L  P  IS   S  +     
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 240 NALS-ALPAELGKL--SKLGTLDLHSNQLKEYC--VEACQLRLSVLDLSNNSLSGLPPEI 294
                       +   S L    ++S+  ++         L+ + +   +N+++ +   +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354
            ++T LR+  +  +P      ++         +Y +                        
Sbjct: 203 MRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQ------------------------ 236

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN 413
                               +     ++T +++     + +LP  L +   +Q + ++ N
Sbjct: 237 -------------QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 414 KIKDWPD-----AILTSLSSLSCLK---LDNNPLRQVP-SDGFKDIPMLQILDLSYN-IA 463
           +             L        ++   +  N L+  P     + +  L +L+  YN + 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 464 SLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEGF--KNL 519
                P F S   L  L L   Q+ E P +     +Q+  L  + N L+ IP  F  K++
Sbjct: 344 GKL--PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 520 TSLTELDLSDNNIS--------ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAV 571
           + ++ +D S N I          L P       ++ ++ L  N +    + +   G+   
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSP-- 458

Query: 572 LKYL 575
           L  +
Sbjct: 459 LSSI 462

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 5e-19
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 34/228 (14%)

Query: 380 GEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIK-DWPDAILTSLSSLSCLKLDNN 437
           G +T L L        +P  +     L+ L L  +  K +        +S+    +    
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM--------QLREA 489
                        P     DL  +   +  +P   S+     + L+          +   
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKD--CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 490 PTDILRLQQLRILDLSQNSL--------------------QSIPEGFKNLTSLTELDLSD 529
              ++RL +LR   +  +                      ++    + NL  LT++++ +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 530 NNIS-ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 576
                 LP  L  L P +Q + +  N   S  +   D    A     +
Sbjct: 259 CPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  216 bits (553), Expect = 7e-63
 Identities = 106/577 (18%), Positives = 194/577 (33%), Gaps = 59/577 (10%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +      +   +P+ +  +                + L L+ N +  L      + P
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS---------------TKNLDLSFNPLRHLGSYSFFSFP 52

Query: 69  LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
            L VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 127 KEL-PSSLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L    +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +   
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM 237
             +      L  S N +N +        RL +L L  N      + + I G   L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 238 GNNALSALPA----ELGKLSKLGTLDLHSNQLKEYCVEACQL--------RLSVLDLSNN 285
                         +   L  L  L +   +L         +         +S   L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           ++  +          + L L               PT  L    R     N+   A +  
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           +  +     L ++   LS +G          +    +  LDLS N +  +         L
Sbjct: 345 D--LPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IA 463
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 464 SLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLT 520
                  F+ L +L  L L   QL +        L  L++L++S N+  S+    +K L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 521 SLTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPL 556
           SL  LD S N+I     + L     SL  L L  N  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (446), Expect = 6e-48
 Identities = 91/462 (19%), Positives = 156/462 (33%), Gaps = 42/462 (9%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S     I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            ++ + P   K   L KL L  N   +L          A L+  R  L E  +       
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 346 E-DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
           +   +     L++    L+     L  I         ++   L   +I+ +    S    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFG 305

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
            Q L L   K          +L   S  +L     +   +    D+P L+ LDLS N  S
Sbjct: 306 WQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 465 LPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTE 524
                  S                          L+ LDLS N + ++   F  L  L  
Sbjct: 361 FKGCCSQS--------------------DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 525 LDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILD 565
           LD   +N+  +      L   +L  L +     R     I +
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (406), Expect = 2e-42
 Identities = 105/538 (19%), Positives = 184/538 (34%), Gaps = 71/538 (13%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+ L       L  L  L      L+ L    IG L  LK L+V+ N I 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKA----SNNCITSLPEDLA 157
             K+P+   + T L   D SSN+++ +  + L     +         S N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 158 DCSKMSKLDVEGNKLTV-----------------LSNNLIASWTMLTELIASK------- 193
              ++ KL +  N  ++                 L      +   L +   S        
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 194 -----------NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
                        L+ + +    L+ +    L    I  +    S         + N   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTT 299
              P     L  L  L   SN+      E     L  LDLS N LS            T+
Sbjct: 317 GQFPTLK--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L+ L L+ N + T+ S+ +       L++L      +       ++  +      L    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQ---LEHLD--FQHSNLK--QMSEFSVFLSLRNL---- 423

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIK 416
             L +   +     + I+     +  L ++ NS QE  LP   +   +L  L LS+ +++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                   SLSSL  L + +N    + +  +K +  LQ+LD S N I +  +        
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 476 HLQELYLRM-QLR---EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 528
            L  L L         E  + +  ++  R L +    ++ + P   + +  +  L+++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 58/295 (19%), Positives = 94/295 (31%), Gaps = 67/295 (22%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDG----------------- 70

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 71  -----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE-APTDILRLQQLRI----LDLS 505
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 506 QNSLQSIPEGFKNLTSLTELDLSDNNISA-LPPELGLLEPSLQALRLDGNPLRSI 559
            N +  I  G      L +L L +N  S  +          L+  RL     R+ 
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  201 bits (513), Expect = 3e-56
 Identities = 132/555 (23%), Positives = 204/555 (36%), Gaps = 85/555 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM- 104
           L+ L ++ NN       L +   L  L++S NKLS +   AI     LK L++S N  + 
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 105 KIPDEIGSATALVKFDCSSNQLK-ELPSSL-GRCLNLSDFKASNNCIT-SLPEDLADCSK 161
            IP       +L     + N+   E+P  L G C  L+    S N    ++P     CS 
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 162 MSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGM-PETIGSLS-RLIRLDLHQNR 218
           +  L +  N  +  L  + +     L  L  S N  +G  PE++ +LS  L+ LDL  N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 219 IL-SIPSSISGCC--SLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCVE 271
               I  ++      +L E Y+ NN  +  +P  L   S+L +L L  N L       + 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 272 ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +   +L  L L  N L G +P E+  + TL  L+L  N L         G  P+ L    
Sbjct: 440 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT 490

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
           +                       L+     +SL    L+  IP  I     +  L LS 
Sbjct: 491 N-----------------------LNW----ISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKI--------------------KDWPDAILTSLSS 428
           NS    +P EL  C SL  L L+ N                             + +   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 429 LSCLKLDNNPLR---QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM- 484
                   N L           + +      +++  +     +P F +   +  L +   
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 485 QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGL 541
            L    P +I  +  L IL+L  N +  SIP+   +L  L  LDLS N +   +P  +  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 542 LEPSLQALRLDGNPL 556
           L   L  + L  N L
Sbjct: 703 L-TMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  198 bits (507), Expect = 2e-55
 Identities = 128/528 (24%), Positives = 208/528 (39%), Gaps = 79/528 (14%)

Query: 47  LQKLILAHNNIE-KLKEDLR-NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           LQ L LA N    ++ + L      LT L++S N     +P   G   +L+SL +S N+ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 104 M-KIPDE-IGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD 158
             ++P + +     L   D S N+   ELP SL     +L     S+N  +  +  +L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
             K +  +L ++ N  T      +++ + L  L  S N L+G  P ++GSLS+L  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCV 270
            N +   IP  +    +L    +  N L+  +P+ L   + L  + L +N+L       +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 271 EACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              +  L++L LSNNS SG +P E+G   +L  L L  N          NG  PA +   
Sbjct: 511 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF--------NGTIPAAMFKQ 561

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
             ++  N  +           M          L  +G+       ++         +++ 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI----RSEQLNRLSTRNPCNITS 617

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
                   P   +  S+  L +S N +      I   + S+                   
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSG---YIPKEIGSMP------------------ 656

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS 508
               L IL+L +N               +            P ++  L+ L ILDLS N 
Sbjct: 657 ---YLFILNLGHN--------------DIS--------GSIPDEVGDLRGLNILDLSSNK 691

Query: 509 LQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
           L   IP+    LT LTE+DLS+NN+S   PE+G  E +    +   NP
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE-TFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  189 bits (482), Expect = 5e-52
 Identities = 145/584 (24%), Positives = 225/584 (38%), Gaps = 94/584 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           S++LS++ L    + V  +               L+ L L++++I       +    LT 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSL---------LSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 73  LNVSHNKLS-ELPAA--IGELHMLKSLDVSFNSI-MKIPDEIGSA-TALVKFDCSSNQL- 126
           L++S N LS  +     +G    LK L+VS N++        G    +L   D S+N + 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 127 KELPSSL---GRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
                       C  L     S N I+  +   ++ C  +  LDV  N  +      +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST-GIPFLGD 221

Query: 183 WTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240
            + L  L  S N L+G     I + + L  L++  N+ +  IP       SL    +  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 241 ALS-ALPAEL-GKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPP 292
             +  +P  L G    L  LDL  N         +   +C   L  L LS+N+ SG LP 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCS-LLESLALSSNNFSGELPM 336

Query: 293 E-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           + + KM  L+ L L+ N          +G  P  L  L + L                  
Sbjct: 337 DTLLKMRGLKVLDLSFNEF--------SGELPESLTNLSASL------------------ 370

Query: 352 ATRLSVTSKELSLEGMNLS-AIPSEIWE--AGEITKLDLSRNSIQ-ELPPELSSCASLQT 407
                     L L   N S  I   + +     + +L L  N    ++PP LS+C+ L +
Sbjct: 371 --------LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 408 LILSRNK----IKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN- 461
           L LS N     I       L SLS L  LKL  N L  ++P +    +  L+ L L +N 
Sbjct: 423 LHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND 477

Query: 462 -IASLPENPPFSSLPHLQELYLRM-QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFK 517
               +P     S+  +L  + L   +L  E P  I RL+ L IL LS NS   +IP    
Sbjct: 478 LTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 518 NLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSIR 560
           +  SL  LDL+ N  +  +P  +      + A  + G     I+
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  185 bits (471), Expect = 2e-50
 Identities = 125/515 (24%), Positives = 206/515 (40%), Gaps = 72/515 (13%)

Query: 70  LTVLNVSHNKLS----ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +T +++S   L+     + +++  L  L+SL +S + I         + +L   D S N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 126 LK-ELPS--SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLT---VLSN 177
           L   + +  SLG C  L     S+N +            + +  LD+  N ++   V+  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 178 NLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            L      L  L  S N ++G +   +     L  LD+  N   +    +  C +L    
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229

Query: 237 MGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG-LPPE 293
           +  N LS      +   ++L  L++ SNQ     +    L+ L  L L+ N  +G +P  
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDF 288

Query: 294 I-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
           + G   TL  L L+GN           G  P                             
Sbjct: 289 LSGACDTLTGLDLSGNHF--------YGAVPPFFGSCSL--------------------- 319

Query: 353 TRLSVTSKELSLEGMNLS-AIPSE-IWEAGEITKLDLSRNSIQ-ELPPELSSC-ASLQTL 408
             L    + L+L   N S  +P + + +   +  LDLS N    ELP  L++  ASL TL
Sbjct: 320 --L----ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 409 ILSRNKIK-DWPDAIL-TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IA 463
            LS N         +     ++L  L L NN    ++P     +   L  L LS+N    
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSG 432

Query: 464 SLPENPPFSSLPHLQELYLRM-QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLT 520
           ++P +    SL  L++L L +  L  E P +++ ++ L  L L  N L   IP G  N T
Sbjct: 433 TIPSS--LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490

Query: 521 SLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGN 554
           +L  + LS+N ++  +P  +G L  +L  L+L  N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNN 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  194 bits (496), Expect = 4e-55
 Identities = 119/511 (23%), Positives = 187/511 (36%), Gaps = 42/511 (8%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +    +    D S N L+ L S S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            +      S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKL----GTLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++    L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE--IGKMTTLRKLLLTG------NPLRTLR 314
            +      A + +RL  L L NN  S    +  I  +  L    L          L    
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL------------ITMATRLSVTSKEL 362
            S + G     ++  R    +    +       L            I      S      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI--KDWPD 420
            LE +N         +   + +L  + N       E+    SL+ L LSRN +  K    
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
                 +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 480 LYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSI--PEGFKNLTSLTELDLSDNNISAL 535
           L +     R A   I   L  L +L ++ NS Q    P+ F  L +LT LDLS   +  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 536 PPELGLLEPSLQALRLDGNPLRSIRRTILDR 566
            P       SLQ L +  N L+S+   I DR
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  173 bits (441), Expect = 2e-47
 Identities = 97/475 (20%), Positives = 167/475 (35%), Gaps = 48/475 (10%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +  I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRLPENEDSEAST 343
            ++ + P   K   L KL L  N       +++      L  L+  R  L E  +     
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 344 TK-EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
              +  +     L++    L+     L  I         ++   L   +I+ +    S  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN 303

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
              Q L L   K   +P   L SL  L+     +N      S    D+P L+ LDLS N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSL 522
            S       S                          L+ LDLS N + ++   F  L  L
Sbjct: 359 LSFKGCCSQS--------------------DFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 523 TELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 576
             LD   +N+  +      L   +L  L +     R     I +  +   L+ LK
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS--LEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (373), Expect = 4e-38
 Identities = 95/479 (19%), Positives = 160/479 (33%), Gaps = 60/479 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L L+   ++ +    +                 LQKL+    N+  L+   + +L  L 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSS------------LQKLVAVETNLASLENFPIGHLKTLK 127

Query: 72  VLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKIPDEI-----GSATALVKFDCSSN 124
            LNV+HN +     P     L  L+ LD+S N I  I               +  D S N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE---------GNKLTVL 175
            +  +     + + L      NN  +           ++ L+V             L   
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 176 SNNLIASWTMLTELIASKNLL----NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS 231
             + +     LT        L    + + +    L+ +    L    I  +    S    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFG 305

Query: 232 LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL- 290
                + N      P    KL  L  L   SN+      E     L  LDLS N LS   
Sbjct: 306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 291 --PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL---RSRLPENEDSEASTTK 345
                    T+L+ L L+ N + T+ S+ +       L++L    S L +  +     + 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSL 420

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSC 402
            +L             L +   +     + I+     +  L ++ NS QE       +  
Sbjct: 421 RNL-----------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
            +L  L LS+ +++        SLSSL  L + +N L+ VP   F  +  LQ + L  N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 1e-31
 Identities = 91/455 (20%), Positives = 156/455 (34%), Gaps = 56/455 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK--EDLRNLPLL 70
            L     +L  + N    +               L++L +AHN I+  K  E   NL  L
Sbjct: 104 KLVAVETNLASLENFPIGHLKT------------LKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 71  TVLNVSHNKLSELPA-AIGELHMLK----SLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             L++S NK+  +    +  LH +     SLD+S N +  I         L K    +N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 126 LK---------ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
                       L       L L +F+   N        L     ++  +     L    
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 177 NNLIASWTMLTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
           +++I  +  LT + +       +  + +          L+L   +    P+      SL 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPTL--KLKSLK 328

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSG 289
                +N      +E+  L  L  LDL  N L      +        L  LDLS N +  
Sbjct: 329 RLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK-YLRS-RLPENEDSEASTTKED 347
           +      +  L  L    + L+ +    V      L+   +                   
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--------RVAFNG 439

Query: 348 LITMATRLSVTSKELSLEGMNLSA-IPSEIWEAGE-ITKLDLSRNSIQELPPE-LSSCAS 404
           +    + L    + L + G +       +I+     +T LDLS+  +++L P   +S +S
Sbjct: 440 IFNGLSSL----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           LQ L ++ N++K  PD I   L+SL  + L  NP 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (291), Expect = 1e-27
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 14/210 (6%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKI 415
           V +       +N   IP  +        LDLS N ++ L      S   LQ L LSR +I
Sbjct: 7   VPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
           +   D    SLS LS L L  NP++ +    F  +  LQ L      +ASL    P   L
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHL 123

Query: 475 PHLQELYLRM-QLREA--PTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----ELD 526
             L+EL +    ++    P     L  L  LDLS N +QSI     + L  +      LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 527 LSDNNISALPPELGLLEPSLQALRLDGNPL 556
           LS N ++ + P     E  L  L L  N  
Sbjct: 184 LSLNPMNFIQPGA-FKEIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 58/297 (19%), Positives = 95/297 (31%), Gaps = 67/297 (22%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGA---------------- 71

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 72  ------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE-APTDILRLQQLRI----LDLS 505
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 506 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRR 561
            N +  I  G      L +L L +N  S    +  +     L+  RL     R+   
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++    L    IE++ +D         L + + K  + P    +L  LK L  + N    
Sbjct: 283 NVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339

Query: 106 IPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              E+    +L   D S N L        S     +L     S N + ++  +     ++
Sbjct: 340 AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL 220
             LD + + L  +S  ++  S   L  L  S              LS L  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 221 SI--PSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR- 276
               P   +   +L    +    L  L       LS L  L++ SNQLK   V       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDR 516

Query: 277 ---LSVLDLSNNSLSGLPPEI 294
              L  + L  N      P I
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM 104
           L+ L L+ N +  +  +   L  L  L+  H+ L ++        L  L  LD+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 105 KIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPED-LADCS 160
              + I    ++L     + N  +E  LP       NL+    S   +  L        S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            +  L++  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  190 bits (484), Expect = 2e-54
 Identities = 103/512 (20%), Positives = 176/512 (34%), Gaps = 74/512 (14%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIMK 105
           LQ+ +   +N+ ++  +  N+   T    + ++     P   GE   +    +       
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-- 70

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                       + + ++  L  LP       +L    AS N +T LPE       +   
Sbjct: 71  --------RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +     L+ L   L         L  S N L  +PE + + S L  +D+  N +  +P  
Sbjct: 120 NNNLKALSDLPPLL-------EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL 171

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
                SL     GNN L  LP EL  L  L  +   +N LK+       L    +   NN
Sbjct: 172 PP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNN 225

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L  LP E+  +  L  +    N L+TL     +      L+ L   + +N         
Sbjct: 226 ILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPS------LEALN--VRDNY-------- 268

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
              +T    L  +   L +     S +         +  L+ S N I+ L     S   L
Sbjct: 269 ---LTDLPELPQSLTFLDVSENIFSGLSELP---PNLYYLNASSNEIRSLCDLPPS---L 319

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IAS 464
           + L +S NK+ + P         L  L    N L +VP         L+ L + YN +  
Sbjct: 320 EELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLRE 371

Query: 465 LPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTE 524
            P+         +++L +   L E P      Q L+ L +  N L+  P+      S+ +
Sbjct: 372 FPD-----IPESVEDLRMNSHLAEVPE---LPQNLKQLHVETNPLREFPD---IPESVED 420

Query: 525 LDLSDNNISALPPELGLLEPSLQALRLDGNPL 556
           L ++   +             L+    + +  
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  172 bits (438), Expect = 8e-48
 Identities = 94/449 (20%), Positives = 175/449 (38%), Gaps = 73/449 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L+N  L  +P                     L+ L+ + N++ +L E  ++L  L V
Sbjct: 75  ELELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQSLKSLLV 118

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
            N +   LS+LP       +L+ L VS N + K+P E+ +++ L   D  +N LK+LP  
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                +L    A NN +  LPE L +   ++ +  + N L  L +        L  ++A 
Sbjct: 172 PP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAG 223

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N+L  +PE + +L  L  +    N + ++P       SL    + +N L+ LP     L
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSL 279

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
           + L   +   + L E         L  L+ S+N +  L        +L +L ++ N L  
Sbjct: 280 TFLDVSENIFSGLSELPPN-----LYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE 331

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
           L +          L+ L      N            +     L    K+L +E   L   
Sbjct: 332 LPALPPR------LERL--IASFNH-----------LAEVPELPQNLKQLHVEYNPLREF 372

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
           P        +  L ++ + + E+P       +L+ L +  N ++++PD       S+  L
Sbjct: 373 PDIP---ESVEDLRMN-SHLAEVPELPQ---NLKQLHVETNPLREFPD----IPESVEDL 421

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++++  +        +    L+     ++
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  164 bits (418), Expect = 4e-45
 Identities = 92/502 (18%), Positives = 172/502 (34%), Gaps = 98/502 (19%)

Query: 83  LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSD 141
           +         L+      +++ ++P E  +  +  ++  + ++  +  P   G    ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
            +  +       E          L++    L+ L          L  L+AS N L  +PE
Sbjct: 63  SRLRDCLDRQAHE----------LELNNLGLSSLPELP----PHLESLVASCNSLTELPE 108

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
              SL  L+  + +   +  +P        L    + NN L  LP EL   S L  +D+ 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           +N LK+       L    +   NN L  L PE+  +  L  +    N L+ L    ++  
Sbjct: 162 NNSLKKLPDLPPSLE--FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS-- 216

Query: 322 TPALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
               L+ +         LPE             +     L      +  +   L  +P  
Sbjct: 217 ----LESIVAGNNILEELPE-------------LQNLPFL----TTIYADNNLLKTLPDL 255

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 +  L++  N + +LP       SL  L +S N      +       +L  L   
Sbjct: 256 P---PSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSE----LPPNLYYLNAS 305

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDI 493
           +N +R +        P L+ L++S N +  LP     +  P L+ L      L E P   
Sbjct: 306 SNEIRSLCD----LPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPELP 356

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLT----------------SLTELDLSDNNISALPP 537
              Q L+ L +  N L+  P+  +++                 +L +L +  N +   P 
Sbjct: 357 ---QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413

Query: 538 ELGLLEPSLQALRLDGNPLRSI 559
                  S++ LR++   +   
Sbjct: 414 IPE----SVEDLRMNSERVVDP 431

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  189 bits (481), Expect = 4e-53
 Identities = 102/526 (19%), Positives = 192/526 (36%), Gaps = 58/526 (11%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +     V +      + +P+ +     +KSLD+SFN I  I                   
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG------------------ 42

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
                  L  C NL      ++ I ++  D       +  LD+  N L+ LS++     +
Sbjct: 43  ----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 185 MLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNN 240
            L  L    N    +  T    +L+ L  L +      S       +G  SL E  +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKM 297
           +L    ++ L  +  +  L LH ++          +   +  L+L + +L+        +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-------RLPENEDSEASTTKEDLIT 350
             +   +       ++ +         LL+Y+             N   + + ++ D+++
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 351 MATRLSVTS-KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQT 407
              ++   + + L +    L    S ++    ++ ++ +  + +  +P        SL+ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 408 LILSRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDG--FKDIPMLQILDLSYN- 461
           L LS N + +      A   +  SL  L L  N LR +   G     +  L  LD+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLT 520
              +P++        ++ L L    +R   T I   Q L +LD+S N+L S       L 
Sbjct: 399 FHPMPDS--CQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL---FLP 451

Query: 521 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 566
            L EL +S N +  LP       P L  +++  N L+S+   I DR
Sbjct: 452 RLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDR 495

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 2e-32
 Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 8/213 (3%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPD 420
                 + ++IPS +     +  LDLS N I  +    L +CA+LQ LIL  ++I     
Sbjct: 10  CDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
               SL SL  L L +N L  + S  F  +  L+ L+L  N   +L     F +L +LQ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 480 LYL--RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 535
           L +       E        L  L  L++   SL++      K++  +  L L  +  + L
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 536 PPELGLLEPSLQALRLDGNPLRSIRRTILDRGT 568
                 +  S++ L L    L   + + L    
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 3e-32
 Identities = 78/473 (16%), Positives = 150/473 (31%), Gaps = 89/473 (18%)

Query: 14  LNLSNRSLRDVPNEVYKN-------------FDEAGEGDKWWEAVDLQKLILAHNNI--E 58
           L+LS+  L  + +  +               +   G    +    +LQ L + +     E
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 59  KLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSA-TAL 116
             + D   L  L  L +    L    + ++  +  +  L +  +    + +      +++
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 117 VKFDCSSNQLKELPSSLGRCL------------NLSDFKASNNCITSLPEDLADCSKMSK 164
              +     L     S                        S N +  L   + + S++  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 165 LDVEGNKLTVLSNNLIASWTMLTEL---------IASKNLLNGMPETIGSLSRLIRLDLH 215
            D   N L   + +     + L ++         I    L   +      L ++ R+ + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 216 QNRILSIPSSI-SGCCSLAEFYMGNNALSAL----PAELGKLSKLGTLDLHSNQLKEYCV 270
            +++  +P S      SL    +  N +        A  G    L TL L  N L+    
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 271 EACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
               L     L+ LD+S N+   +P        +R L L+   +R +           + 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV--------KTCIP 430

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
           + L                              + L +   NL +    +     + +L 
Sbjct: 431 QTL------------------------------EVLDVSNNNLDSFSLFL---PRLQELY 457

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +SRN ++ LP   S    L  + +SRN++K  PD I   L+SL  + L  NP 
Sbjct: 458 ISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 47  LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           LQ L+L+ N++  +++    L  L  LT L++S N    +P +      ++ L++S   I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
             +   I     L   D S+N L      L     L +   S N + +LP+  +    + 
Sbjct: 423 RVVKTCI--PQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDA-SLFPVLL 476

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            + +  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  183 bits (466), Expect = 1e-49
 Identities = 89/488 (18%), Positives = 167/488 (34%), Gaps = 45/488 (9%)

Query: 120 DCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTV-L 175
                 L ++P  L     L LS      N I ++         ++  L++      + +
Sbjct: 10  FYRFCNLTQVPQVLNTTERLLLS-----FNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI---PSSISGCCS 231
                 +   L  L    + +  +       L  L  L L+   +              +
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 232 LAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQ----LRLSVLDLSNN 285
           L    +  N + +L      GKL+ L ++D  SNQ+   C    +      LS   L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 286 SLSGLPP-------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           SL               +   L  L ++GN      +   +        +          
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 339 SEASTTKEDLITMATRLSVTS---KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQE 394
           +             T   +     + L L    + ++ S ++E   ++  L+L+ N I +
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 395 LPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
           +  E      +LQ L LS N + +   +    L  ++ + L  N +  +    FK +  L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLRILDLSQNSLQS 511
           Q LDL  N + ++        +P + +++L   +L   P   L    +    LS+N L++
Sbjct: 365 QTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANLI---HLSENRLEN 415

Query: 512 IPEG--FKNLTSLTELDLSDNNISALPPELGL-LEPSLQALRLDGNPLRSIRRTILDRGT 568
           +        +  L  L L+ N  S+   +      PSL+ L L  N L+    T L    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 569 KAVLKYLK 576
              L +L+
Sbjct: 476 FEGLSHLQ 483

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  182 bits (464), Expect = 2e-49
 Identities = 120/578 (20%), Positives = 206/578 (35%), Gaps = 85/578 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED--LRNLPLL 70
            L LS   +R V    +                 LQ L L         +    RNLP L
Sbjct: 28  RLLLSFNYIRTVTASSFPFL------------EQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQL 126
            +L++  +K+  L   A   L  L  L + F  +           +  AL + D S NQ+
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 127 KELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + L    S G+  +L     S+N I  + E       +  L  +      L+ N + S  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----LEPLQGKTLSFFSLAANSLYSRV 190

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
            +          N           L  LD+  N      +              +NA+S 
Sbjct: 191 SVDWGKCMNPFRN---------MVLEILDVSGNGWTVDITGNF-----------SNAISK 230

Query: 245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPEI-GKMT 298
             A  L     +       + +K+          +  +  LDLS+  +  L   +   + 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSV 357
            L+ L L  N +  +      G     L+ L   L  N   E  S+    L  +      
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDN--LQVL--NLSYNLLGELYSSNFYGLPKV------ 340

Query: 358 TSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK 416
               + L+  +++ I  + ++   ++  LDL  N++  +        S+  + LS NK+ 
Sbjct: 341 --AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV 394

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSL 474
                +     + + + L  N L  +    F   +P LQIL L+ N  +S   +   S  
Sbjct: 395 T----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 475 PHLQELYL------RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 526
           P L++L+L           E   D+   L  L++L L+ N L S+P G F +LT+L  L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 527 LSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 564
           L+ N ++ L      L  +L+ L +  N L +    + 
Sbjct: 511 LNSNRLTVLSH--NDLPANLEILDISRNQLLAPNPDVF 546

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (372), Expect = 2e-37
 Identities = 99/575 (17%), Positives = 194/575 (33%), Gaps = 71/575 (12%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL---KEDLRNLPLL 70
           L+L +  +  +  + ++                L +L L    +          RNL  L
Sbjct: 78  LDLGSSKIYFLHPDAFQGLF------------HLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 71  TVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIPDEI---GSATALVKFDCSSNQ 125
           T L++S N++  L    + G+L+ LKS+D S N I  + +          L  F  ++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           L    S       +  R + L     S N  T                   N ++     
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-----------NAISKSQAF 234

Query: 179 LIASWTMLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
            +     +       + +    +      + S +  LDL    + S+ S +      L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLP 291
             +  N ++ +  E    L  L  L+L  N L E          +++ +DL  N ++ + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 292 PEI-GKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +    +  L+ L L  N L T      +    ++G     L  +         SE    
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE---- 398
             D++    R+    + L L     S+   +   +    + +L L  N +Q         
Sbjct: 415 NLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 399 --LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                 + LQ L L+ N +   P  + + L++L  L L++N L  +  +       L+IL
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 516
           D+S N           +      + L +        I   +    ++   ++  +I    
Sbjct: 532 DISRN--------QLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583

Query: 517 KNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 551
            ++  +     S  ++ +L  E    E  L++L+ 
Sbjct: 584 ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKF 618

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 59/331 (17%), Positives = 105/331 (31%), Gaps = 87/331 (26%)

Query: 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
           +C     +      +L+ +P  +    T  +LLL+ N +RT+ +S         L+ L+ 
Sbjct: 1   SCSFDGRIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPF-----LEQLQ- 51

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391
                                         L L                    L + + +
Sbjct: 52  -----------------------------LLELGSQYTP--------------LTIDKEA 68

Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ--VPSDGFKD 449
            + LP       +L+ L L  +KI          L  L  L+L    L    +    F++
Sbjct: 69  FRNLP-------NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDI---LRLQQLRILDL 504
           +  L  LDLS N I SL  +P F  L  L+ +     Q+          L+ + L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 505 SQNSLQSIPEG--------FKNLTSLTELDLSDNNISALPPELGL------------LEP 544
           + NSL S            F+N+  L  LD+S N  +                    L  
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 545 SLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
            +       + ++   +       ++ +++L
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  170 bits (433), Expect = 2e-48
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 25/289 (8%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPAAIGELHML 93
              W   +     +       LK     L     P    L +    L + P     L  L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS-NNCITSL 152
           + + +    +M++PD +     L     + N L+ LP+S+     L +        +T L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
           PE LA                  ++        L  L      +  +P +I +L  L  L
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 213 DLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAELGKLSKLGTLDL-HSNQLKEYCV 270
            +  + + ++  +I     L E  + G  AL   P   G  + L  L L   + L    +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 271 EACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           +  +L  L  LDL     LS LP  I ++     +L+  +    L    
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  136 bits (345), Expect = 4e-36
 Identities = 66/370 (17%), Positives = 114/370 (30%), Gaps = 62/370 (16%)

Query: 196 LNGMPETIGSLSRLIRLDLH-QNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK 254
           +          S    L       +      +S        Y  +             + 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57

Query: 255 LGTLDLHSNQLKEYCVEACQLR---LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                     LK                L+L +  L   P +  +++ L+ + +    L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L  ++           L                              + L+L    L A
Sbjct: 118 ELPDTMQQ------FAGL------------------------------ETLTLARNPLRA 141

Query: 372 IPSEIWEAGEITKLDLSR-NSIQELPPELSSCA---------SLQTLILSRNKIKDWPDA 421
           +P+ I     + +L +     + ELP  L+S           +LQ+L L    I+  P +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQE 479
           I  +L +L  LK+ N+PL  +       +P L+ LDL     + + P    F     L+ 
Sbjct: 202 I-ANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKR 257

Query: 480 LYLRM--QLREAPTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALP 536
           L L+    L   P DI RL QL  LDL     L  +P     L +   + +  +  + L 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 537 PELGLLEPSL 546
               +  P+ 
Sbjct: 318 QHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 9e-27
 Identities = 50/273 (18%), Positives = 90/273 (32%), Gaps = 39/273 (14%)

Query: 287 LSGLPPEIGKMTTLRKLLLTG-NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +          +    L   G   LR     L         +   +       S      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ------WQRHYNADRNRWHSAWRQAN 54

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI--TKLDLSRNSIQELPPELSSCA 403
            +   +           +  G  L A    + +A +     L+L    + + P +    +
Sbjct: 55  SNNPQI----------ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS 104

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-- 461
            LQ + +    + + PD +    + L  L L  NPLR +P      +  L+ L +     
Sbjct: 105 HLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACPE 162

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS 521
           +  LPE                +   +A  +   L  L+ L L    ++S+P    NL +
Sbjct: 163 LTELPEP---------------LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207

Query: 522 LTELDLSDNNISALPPELGLLEPSLQALRLDGN 554
           L  L + ++ +SAL P +  L   L+ L L G 
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLP-KLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 14  LNLS-NRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           L++     L ++P  +                V+LQ L L    I  L   + NL  L  
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQ----GLVNLQSLRLEWTGIRSLPASIANLQNLKS 210

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVS-FNSIMKIPDEIGSATALVKFDCSS-NQLKELP 130
           L + ++ LS L  AI  L  L+ LD+    ++   P   G    L +      + L  LP
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 131 SSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
             + R   L          ++ LP  +A       + V  +    L  +   +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 4e-18
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 9/164 (5%)

Query: 395 LPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
                   +  + L       ++ + D     LS        +            +    
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRWHSAWR-QANSNNP 58

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLRILDLSQNSLQS 511
           QI   +   + +  +    ++ P    L LR + L + P    RL  L+ + +    L  
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME 118

Query: 512 IPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
           +P+  +    L  L L+ N + ALP  +  L   L+ L +   P
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACP 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  173 bits (440), Expect = 6e-48
 Identities = 95/488 (19%), Positives = 181/488 (37%), Gaps = 58/488 (11%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
            I     I ++      L       +    +++  +   +L  + +L      I  I   
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID-G 63

Query: 110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169
           +     L + + S+NQL ++   L     L D   +NN I  +   LA+ + ++ L +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
           N++T +    + + T L  L  S N ++     +  L+ L +L    N++  +   ++  
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDL-KPLANL 176

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
            +L    + +N +S +   L KL+ L +L   +NQ+ +         L  L L+ N L  
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
           +   +  +T L  L L  N +  L          + L  L                    
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNL-------APLSGLTKL-------------------- 267

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                      EL L    +S I   +     +T L+L+ N ++++ P +S+  +L  L 
Sbjct: 268 ----------TELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT 315

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469
           L  N I D     ++SL+ L  L   NN +  V S    ++  +  L   +N   + +  
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN--QISDLT 369

Query: 470 PFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 528
           P ++L  + +L L       AP +      +     +       P    +  S TE D++
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429

Query: 529 DNNISALP 536
            N  S   
Sbjct: 430 WNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (387), Expect = 1e-40
 Identities = 90/426 (21%), Positives = 175/426 (41%), Gaps = 53/426 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L ++  ++N +  +   L+NL  L  + +++N+++++   +  L  L  L +  N I  I
Sbjct: 70  LTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI 127

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + + SSN + ++ + L    +L      N      P  LA+ + + +LD
Sbjct: 128 D-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLD 183

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK++ +S   +A  T L  LIA+ N ++ +   +G L+ L  L L+ N++  I + +
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-L 239

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +   +L +  + NN +S L   L  L+KL  L L +NQ+      A    L+ L+L+ N 
Sbjct: 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L  + P I  +  L  L L  N +  + S + +      L  L                 
Sbjct: 299 LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSS------LTKL----------------- 333

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L      +S +   +     I  L    N I +L P L++   + 
Sbjct: 334 -------------QRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 378

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
            L L+     + P     ++S  + +K     L  +      D       D+++N+ S  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

Query: 467 ENPPFS 472
               ++
Sbjct: 437 NEVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (381), Expect = 7e-40
 Identities = 82/438 (18%), Positives = 162/438 (36%), Gaps = 57/438 (13%)

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
               + ++  +                +T       D  +++ L  +   +  +    + 
Sbjct: 10  QDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG--VE 65

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
               LT++  S N L  +   + +L++L+ + ++ N+I  I   ++   +L    + NN 
Sbjct: 66  YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123

Query: 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301
           ++ +   L  L+ L  L+L SN + +    +    L  L   N         +  +TTL 
Sbjct: 124 ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLE 180

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
           +L ++ N +  + S L        L  L                              + 
Sbjct: 181 RLDISSNKVSDI-SVLAK------LTNL------------------------------ES 203

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           L      +S I   +     + +L L+ N ++++   L+S  +L  L L+ N+I +    
Sbjct: 204 LIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP- 260

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
            L+ L+ L+ LKL  N +  +       +  L  L+L+ N   L +  P S+L +L  L 
Sbjct: 261 -LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN--QLEDISPISNLKNLTYLT 315

Query: 482 LRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 541
           L        + +  L +L+ L    N +  +     NLT++  L    N IS L P   L
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANL 374

Query: 542 LEPSLQALRLDGNPLRSI 559
               +  L L+     + 
Sbjct: 375 --TRITQLGLNDQAWTNA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (334), Expect = 1e-33
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 30/370 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L +N I  + + L+NL  L  L +S N +S++ A +  L  L+ L    N +  +
Sbjct: 114 LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDL 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + D SSN++ ++   L +  NL    A+NN I+ +   L   + + +L 
Sbjct: 171 K-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELS 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           + GN+L  +    +AS T LT+L  + N ++ +   +  L++L  L L  N+I +I   +
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +G  +L    +  N L  +   +  L  L  L L+ N + +    +   +L  L   NN 
Sbjct: 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           +S +   +  +T +  L    N +  L   ++L        +  L            +  
Sbjct: 343 VSDVSS-LANLTNINWLSAGHNQISDLTPLANLTR------ITQL----------GLNDQ 385

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                 +  + +V+              P+ I + G  T+ D++ N          + + 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 405 LQTLILSRNK 414
             T+      
Sbjct: 446 PVTIGKGTTT 455

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  170 bits (432), Expect = 5e-47
 Identities = 83/453 (18%), Positives = 144/453 (31%), Gaps = 75/453 (16%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            C +  L ++P                     LP  +      + +D+  N +  L+   
Sbjct: 16  ICINRGLHQVPE--------------------LPAHV------NYVDLSLNSIAELNETS 49

Query: 180 IASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
            +    L  L   +          T   LS LI L L  N+ L + +             
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----------- 98

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPE 293
                         L+ L  L L    L    +     +    L +L L +N++  + P 
Sbjct: 99  -----------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 294 I--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                M     L LT N ++++    +          LR  L      + +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKC 205

Query: 352 ATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLIL 410
                 TS   L L G       ++               +  ++   + S +       
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKR---------FFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 411 SRNKIKDWPDAILTSL--SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
                KD  +     L  S +    L  + +  +    F     L+ L L+ N I  + +
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 468 NPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTE 524
           N  F  L HL +L L    L    + +   L +L +LDLS N ++++ +  F  L +L E
Sbjct: 317 NA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375

Query: 525 LDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
           L L  N + ++P  +     SLQ + L  NP  
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (285), Expect = 4e-27
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 73/433 (16%)

Query: 45  VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFN 101
             +  + L+ N+I +L E     L  L  L V       +        L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCL-NLSDFKASNNCITSLPEDLA 157
             +++          L     +   L    L  +  + L +L      +N I  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 158 DCS--KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             +  +   LD+  NK+  +    + +               G   T+  LS +   D++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-------------FQGKHFTLLRLSSITLQDMN 196

Query: 216 QNRILSIPS-SISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCV 270
           +  +      +     S+    +  N      A+        +K+ +L L ++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                +    D  N +  GL       + ++   L+ + +  L  S       +    L 
Sbjct: 257 GHTNFK----DPDNFTFKGLEA-----SGVKTCDLSKSKIFALLKS-----VFSHFTDLE 302

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSR 389
                                         +L+L    ++ I     W    + KL+LS+
Sbjct: 303 ------------------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
           N +  +   +  +   L+ L LS N I+   D     L +L  L LD N L+ VP   F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 449 DIPMLQILDLSYN 461
            +  LQ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 3e-22
 Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 23/222 (10%)

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK-DWPDAIL 423
              L  +P        +  +DLS NSI EL     S    LQ L + +        +   
Sbjct: 19  NRGLHQVPELPAH---VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN---IASLPENPPFSSLPHLQEL 480
             LSSL  LKLD N   Q+ +  F  +  L++L L+      A L  N  F  L  L+ L
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-FKPLTSLEML 134

Query: 481 YLRM-QLREAPTDIL--RLQQLRILDLSQNSLQSIPEG-FKNLTS--LTELDLSDNNISA 534
            LR   +++         +++  +LDL+ N ++SI E    N      T L LS   +  
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

Query: 535 LPPELGLLEP--------SLQALRLDGNPLRSIRRTILDRGT 568
           +       E         S+  L L GN  +           
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 7/152 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           + L  N + ++    F  +  LQ L +       +  N  F  L  L  L L   Q  + 
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 490 PTDIL-RLQQLRILDLSQNSLQS--IPEG-FKNLTSLTELDLSDNNISALPPELGLLE-P 544
            T     L  L +L L+Q +L    +    FK LTSL  L L DNNI  + P    L   
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 545 SLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 576
               L L  N ++SI    L          L+
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 4e-20
 Identities = 49/340 (14%), Positives = 105/340 (30%), Gaps = 48/340 (14%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               C +        N  L  +P        +  + L+ N +  L  +  +      L++
Sbjct: 4   GTSECSVIGYNAICINRGLHQVPELP---AHVNYVDLSLNSIAELNETSFSRLQ--DLQF 58

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
           L  ++ +         + +     + L      L L+      + +  +     +  L L
Sbjct: 59  L--KVEQQTPG--LVIRNNTFRGLSSL----IILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 388 SRNSIQE--LPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ ++    L         SL+ L+L  N IK   P +   ++     L L  N ++ + 
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 444 SDGFK----------DIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-----RMQLRE 488
            +              +  + + D++       +         +  L L     +  + +
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 489 APTDILRLQQLRILDL----------SQNSLQSIPEG-FKNL--TSLTELDLSDNNISAL 535
              D +   +++ L L             + +      FK L  + +   DLS + I AL
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 536 PPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
              +      L+ L L  N +  I        T   L  L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH--LLKL 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  172 bits (438), Expect = 9e-47
 Identities = 76/314 (24%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+    L  +P+ +  +               +  L++  NN+  L         L  
Sbjct: 44  VLNVGESGLTTLPDCLPAH---------------ITTLVIPDNNLTSLPALPPE---LRT 85

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           L VS N+L+ LP     L  L         +  +P      + L K     NQL  LP  
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVL 139

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                 L +   S+N + SLP      S++ KL    N+LT L        + L EL  S
Sbjct: 140 PP---GLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N L  +P     L    +L  + NR+ S+P+  S    L E  +  N L++LP    +L
Sbjct: 190 DNQLASLPTLPSELY---KLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSEL 243

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
            +   L +  N+L    +    L    L +  N L+ LP  +  +++   + L GNPL  
Sbjct: 244 KE---LMVSGNRLTSLPMLPSGLL--SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 313 LRSSLVNGPTPALL 326
                +   T A  
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  156 bits (395), Expect = 6e-41
 Identities = 92/443 (20%), Positives = 152/443 (34%), Gaps = 94/443 (21%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
             W  A   ++       ++K++  L N     VLNV  + L+ LP  +     + +L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNG--NAVLNVGESGLTTLPDCLPAH--ITTLVI 68

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N++  +P        L   + S NQL  LP      L LS F      + +LP  L  
Sbjct: 69  PDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL-- 123

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
                KL + GN+LT L          L EL  S N L  +P     L +L     + N+
Sbjct: 124 ----CKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPALPSELCKL---WAYNNQ 172

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278
           + S+P   S    L E  + +N L++LP    +L KL                       
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKL----------------------- 206

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                NN L+ LP        L++L+++GN L +L         P L   L+        
Sbjct: 207 --WAYNNRLTSLPALPSG---LKELIVSGNRLTSL---------PVLPSELK-------- 244

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL + G  L+++P        +  L + RN +  LP  
Sbjct: 245 ----------------------ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPES 279

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
           L   +S  T+ L  N + +     L  ++S               +   ++   L +   
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 459 SYNIASLPENP-PFSSLPHLQEL 480
            + + +    P P        + 
Sbjct: 340 DWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  147 bits (372), Expect = 7e-38
 Identities = 80/363 (22%), Positives = 132/363 (36%), Gaps = 78/363 (21%)

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
            +    L++ ++ + ++P  +     +    + +N L++LPA   +L    TL++  NQL
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELR---TLEVSGNQL 93

Query: 266 KEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
               V    L  LS+       L  LP      + L KL + GN L +L         P 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSL---------PV 138

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L   L+                              ELS+    L+++P+      E+ K
Sbjct: 139 LPPGLQ------------------------------ELSVSDNQLASLPALP---SELCK 165

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L    N +  LP   S    LQ L +S N++   P       S L  L   NN L  +P+
Sbjct: 166 LWAYNNQLTSLPMLPSG---LQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA 218

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRIL 502
                   L+ L +S N + SLP          L+EL +   +L   P        L  L
Sbjct: 219 L----PSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPMLP---SGLLSL 266

Query: 503 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRT 562
            + +N L  +PE   +L+S T ++L  N +S    +       + +      P+      
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPIIRFDMA 323

Query: 563 ILD 565
              
Sbjct: 324 GAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  145 bits (368), Expect = 2e-37
 Identities = 77/346 (22%), Positives = 116/346 (33%), Gaps = 74/346 (21%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
               A   +G + L+ LP  L     + TL +  N L        +LR   L++S N L+
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELR--TLEVSGNQLT 94

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
            LP     +  L         L  L S L                               
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGL------------------------------- 123

Query: 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408
                       +L + G  L+++P        + +L +S N +  LP   S    L  L
Sbjct: 124 -----------CKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSE---LCKL 166

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
               N++   P       S L  L + +N L  +P+        L  L    N + SLP 
Sbjct: 167 WAYNNQLTSLPM----LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPA 218

Query: 468 NPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD 526
                    L+EL +   +L   P       +L+ L +S N L S+P      + L  L 
Sbjct: 219 -----LPSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPM---LPSGLLSLS 267

Query: 527 LSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL 572
           +  N ++ LP  L  L  S   + L+GNPL       L   T A  
Sbjct: 268 VYRNQLTRLPESLIHL-SSETTVNLEGNPLSERTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  142 bits (360), Expect = 3e-36
 Identities = 86/412 (20%), Positives = 133/412 (32%), Gaps = 76/412 (18%)

Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
                         +  + L+V  + LT L + L A    +T L+   N L  +P     
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPE 82

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L  L   ++  N++ S+P    G   L+ F      L ALP      S L  L +  NQL
Sbjct: 83  LRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V    L+   L +S+N L+ LP    +   L KL    N L +L         P L
Sbjct: 134 TSLPVLPPGLQ--ELSVSDNQLASLPALPSE---LCKLWAYNNQLTSL---------PML 179

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
              L+                              ELS+    L+++P+      E+ KL
Sbjct: 180 PSGLQ------------------------------ELSVSDNQLASLPTLP---SELYKL 206

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
               N +  LP   S    L+ LI+S N++   P       S L  L +  N L  +P  
Sbjct: 207 WAYNNRLTSLPALPSG---LKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPML 259

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILD 503
                  L  L +  N +  LPE+     L     + L    L E     L  +++    
Sbjct: 260 ----PSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPLSERTLQAL--REITSAP 311

Query: 504 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
                +        +    T           +P   G   P+ +        
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  163 bits (414), Expect = 4e-44
 Identities = 92/483 (19%), Positives = 177/483 (36%), Gaps = 27/483 (5%)

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP 153
            +D S N ++ +P ++   T     + S N + EL +S +     L     S+N I  L 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 154 ED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLI 210
                   ++  LD+  NKL  +S         L  L  S N  + +P     G++S+L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK---- 266
            L L    +           ++++  +          +   L    T  LH         
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            + ++     ++ L+LSN        +     ++   L T   L  L  + +     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 327 KYL----RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN---LSAIPSEIWEA 379
           + L     + +     S      +           + K LS+  +         S I+E 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 380 -GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
              +   + + +  + +     S  +    L  S N + D        L+ L  L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 438 PLRQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDI 493
            L+++   ++    +  LQ LD+S N ++   +    S    L  L +    L +     
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 553
           L   ++++LDL  N ++SIP+    L +L EL+++ N + ++P  +     SLQ + L  
Sbjct: 419 L-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 554 NPL 556
           NP 
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  143 bits (363), Expect = 4e-37
 Identities = 89/460 (19%), Positives = 156/460 (33%), Gaps = 49/460 (10%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D S N L  +P  L +   + +   S N I+ L   D+   SK+  L +  N++  L  +
Sbjct: 6   DRSKNGLIHVPKDLSQKTTILNI--SQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
           +      L  L  S N L  +         L  LDL  N   ++P               
Sbjct: 64  VFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP--------------- 106

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLRLSVLDLSNNSLSGLPPEIG-- 295
                 +  E G +S+L  L L +  L++  V     L +S + L      G   +    
Sbjct: 107 ------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 296 ---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
                 +L  +  T      +    V       L  ++  L +N+ S   +    L T  
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE------LSSCASLQ 406
              ++T   +     +   I   +W    +    +S   +Q            +S  +L 
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 465
              +  +        I    S+++      +  R V       I     LD S N +   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 466 PENPPFSSLPHLQELYLRM----QLREAPTDILRLQQLRILDLSQNSLQSI--PEGFKNL 519
                   L  L+ L L+M    +L +      +++ L+ LD+SQNS+            
Sbjct: 340 VFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 520 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
            SL  L++S N ++        L P ++ L L  N ++SI
Sbjct: 399 KSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (331), Expect = 7e-33
 Identities = 100/527 (18%), Positives = 185/527 (35%), Gaps = 82/527 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
           LN+S   + ++      +               L+ LI++HN I+ L     +    L  
Sbjct: 26  LNISQNYISELWTSDILSL------------SKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELP 130
           L++SHNKL ++         LK LD+SFN+   +P   E G+ + L     S+  L++  
Sbjct: 74  LDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                 LN+S             ED      +   + E   +   +N             
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEG---LQDFNTESLHIVFPTNKE----------- 177

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
               +L+       S+  +  L+L   + +   +  S   S+      N  LS L     
Sbjct: 178 -FHFILD------VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           + +    + +                +    +SN  L G           R    +G  L
Sbjct: 231 ETTWNSFIRILQLVW--------HTTVWYFSISNVKLQGQLD-------FRDFDYSGTSL 275

Query: 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
           + L                  ++  +      +   ++ +     + T     +  M   
Sbjct: 276 KALS---------------IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 371 AIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSLS 427
           +  S          LD S N + +   E       L+TLIL  N++K+      + T + 
Sbjct: 321 SKIS------PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRM-Q 485
           SL  L +  N +      G       L  L++S N   L +       P ++ L L   +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN--ILTDTIFRCLPPRIKVLDLHSNK 432

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
           ++  P  +++L+ L+ L+++ N L+S+P+G F  LTSL ++ L  N 
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 29/176 (16%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           +D S+N +  +P +LS       L +S+N I +   + + SLS L  L + +N ++ +  
Sbjct: 5   VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDL 504
             FK    L+ LDLS+N                       +L +          L+ LDL
Sbjct: 63  SVFKFNQELEYLDLSHN-----------------------KLVKISCH--PTVNLKHLDL 97

Query: 505 SQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558
           S N+  ++P    F N++ L  L LS  ++              + L + G     
Sbjct: 98  SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 54/389 (13%), Positives = 108/389 (27%), Gaps = 65/389 (16%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +D  +N ++ +P  +S         +  N +S L    +  LSKL  L +  N+++   +
Sbjct: 5   VDRSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +    L  LDLS+N L  +         L+ L L+ N    L       P       
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDAL-------PICKEFGN 113

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           +                       ++L    K L L   +L            I+K+ L 
Sbjct: 114 M-----------------------SQL----KFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD---------NNPL 439
                    +        T  L      +     +  +S  +   L+         +N  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLR-------MQLR 487
               S   K     ++ +L+ N      N             +    +        +  R
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 488 EAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSL 546
           +       L+ L I  +  +         ++  +++   + + +    +           
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 547 QALRLDGNPLRSIRRTILDRGTKAVLKYL 575
             L    N L           T+  L+ L
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTE--LETL 353

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKS---LDVSF 100
                L  ++N +     +   +L  L  L +  N+L EL         +KS   LD+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 101 NSIMKIPDEIG--SATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITSLPEDL 156
           NS+     +       +L+  + SSN L +      RCL   +      +N I S+P+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
                + +L+V  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 501 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 560
           ++D S+N L  +P+        T L++S N IS L     L    L+ L +  N ++ + 
Sbjct: 4   LVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 561 RTILDRGTKAVLKYL 575
            ++     +  L+YL
Sbjct: 62  ISVFKFNQE--LEYL 74

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  160 bits (407), Expect = 2e-43
 Identities = 83/375 (22%), Positives = 136/375 (36%), Gaps = 69/375 (18%)

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-L 249
            +     +PE I   +    LDL +NRI ++     +    L E  +  N +SA+     
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLT 306
             L  L TL L SN+LK   +        L+ LD+S N +  L   +   +  L+ L + 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +     +G     L  L                               +L+LE 
Sbjct: 137 DNDLVYISHRAFSG-----LNSLE------------------------------QLTLEK 161

Query: 367 MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILT 424
            NL++IP+E       +  L L   +I  +          L+ L +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
              +L+ L + +  L  VP    + +  L+ L+LSYN I+++  +     L  LQE+   
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQ-- 278

Query: 484 MQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLL 542
                               L    L  +    F+ L  L  L++S N ++ L   +   
Sbjct: 279 --------------------LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 543 EPSLQALRLDGNPLR 557
             +L+ L LD NPL 
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (385), Expect = 2e-40
 Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 53/339 (15%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI 294
                A+P  +   ++   LDL  N++K   +   +      L  L+L+ N +S + P  
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 295 -GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
              +  LR L L  N L+ +   +  G     L  L                        
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTG-----LSNLT----------------------- 107

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
                  +L +    +  +   +++    +  L++  N +  +     S   SL+ L L 
Sbjct: 108 -------KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           +  +   P   L+ L  L  L+L +  +  +    FK +  L++L++S+        P  
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 472 SSLPHLQELYL-RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 528
               +L  L +    L   P   +R L  LR L+LS N + +I       L  L E+ L 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 529 DNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
              ++ + P    GL    L+ L + GN L ++  ++  
Sbjct: 281 GGQLAVVEPYAFRGL--NYLRVLNVSGNQLTTLEESVFH 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  147 bits (374), Expect = 8e-39
 Identities = 68/302 (22%), Positives = 114/302 (37%), Gaps = 26/302 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  +   +         +P  I   T  R L L  N ++TL            L+ L   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFP--HLEELE-- 62

Query: 333 LPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRN 390
           L EN  S        +L  +        + L L    L  IP  +      +TKLD+S N
Sbjct: 63  LNENIVSAVEPGAFNNLFNL--------RTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 391 SIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 449
            I  L   +     +L++L +  N +        + L+SL  L L+   L  +P++    
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM--QLREAPTDILRLQQLRILDLSQ 506
           +  L +L L +  I ++ +   F  L  L+ L +     L     + L    L  L ++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTI 563
            +L ++P    ++L  L  L+LS N IS +   +   L    LQ ++L G  L  +    
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--LRLQEIQLVGGQLAVVEPYA 291

Query: 564 LD 565
             
Sbjct: 292 FR 293

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (334), Expect = 2e-33
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 30/323 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           ++    +    VP  +                 + + L L  N I+ L +D   + P L 
Sbjct: 15  AVLCHRKRFVAVPEGI---------------PTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L ++ N +S +   A   L  L++L +  N +  IP  +    + L K D S N++  L
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              + + L NL   +  +N +  +     +  + + +L +E   LT +    ++    L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSAL 245
            L      +N + + +   L RL  L++     L  +  +     +L    + +  L+A+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI-GKMTT 299
           P   +  L  L  L+L  N +    +E   L    RL  + L    L+ + P     +  
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 300 LRKLLLTGNPLRTLRSSLVNGPT 322
           LR L ++GN L TL  S+ +   
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 2e-26
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 20/261 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
           +L L +  L+ +P  V+                 L KL ++ N I  L + + ++L  L 
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSN------------LTKLDISENKIVILLDYMFQDLYNLK 131

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L V  N L  +   A   L+ L+ L +   ++  IP E       L+        +  +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 130 PS-SLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              S  R   L   + +    + ++  +      ++ L +    LT +    +     L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
            L  S N ++ +  ++   L RL  + L   ++  +      G   L    +  N L+ L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 246 PAEL-GKLSKLGTLDLHSNQL 265
              +   +  L TL L SN L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  158 bits (401), Expect = 3e-43
 Identities = 66/371 (17%), Positives = 122/371 (32%), Gaps = 61/371 (16%)

Query: 205 SLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
           +L+    +    + +  +P+++      +    + +  +  +          +  L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 263 NQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSL 317
           N ++   +     +    L+VL L  N LS LP  I      L  L ++ N L  +    
Sbjct: 103 NAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                      L+                               L L    L+ +   + 
Sbjct: 161 FQA-----TTSLQ------------------------------NLQLSSNRLTHVDLSLI 185

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            +  +   ++S N +  L   ++    ++ L  S N I      +   L+ L    L +N
Sbjct: 186 PS--LFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK---LQHN 236

Query: 438 PLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILR 495
            L         + P L  +DLSYN +  +  +P F  +  L+ LY+   +L         
Sbjct: 237 NLTDTAW--LLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQP 293

Query: 496 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
           +  L++LDLS N L  +         L  L L  N+I  L         +L+ L L  N 
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--STH-HTLKNLTLSHND 350

Query: 556 LRSIRRTILDR 566
                   L R
Sbjct: 351 WDCNSLRALFR 361

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 5e-37
 Identities = 81/304 (26%), Positives = 121/304 (39%), Gaps = 29/304 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            LNL++  + ++    +              A  +QKL +  N I  L     +N+PLLT
Sbjct: 73  LLNLNDLQIEEIDTYAFAY------------AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQLKEL 129
           VL +  N LS LP  I      L +L +S N++ +I D+   A T+L     SSN+L  +
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              L    +L     S N +++L         + +LD   N + V+   +      LT L
Sbjct: 181 D--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVE---LTIL 231

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE 248
               N L      + +   L+ +DL  N +  I          L   Y+ NN L AL   
Sbjct: 232 KLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307
              +  L  LDL  N L        Q  RL  L L +NS+  L        TL+ L L+ 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSH 348

Query: 308 NPLR 311
           N   
Sbjct: 349 NDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (349), Expect = 4e-36
 Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 81/430 (18%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
             +                        +  K++ L +  N L  + ++   + T L  L 
Sbjct: 134 RGI----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
            S N L  +   +  +  L   ++  N + ++   I    ++ E    +N+++ +   + 
Sbjct: 172 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV- 224

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
              +L  L L  N L +         L  +DLS N L  +      KM  L +L ++ N 
Sbjct: 225 -NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           L  L            +  L+                               L L   +L
Sbjct: 284 LVALNLYGQP------IPTLK------------------------------VLDLSHNHL 307

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
             +     +   +  L L  NSI  L    S+  +L+ L LS N      +++     ++
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWD--CNSLRALFRNV 363

Query: 430 SCLKLDNNPL 439
           +   +D+   
Sbjct: 364 ARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 1e-29
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 121 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 222

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 223 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 337

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
           D+ L        + +D              +   +I+    + +  LP      S   ++
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA-LLDSFRQVE 72

Query: 479 ELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 535
            L L   Q+ E  T        ++ L +  N+++ +P   F+N+  LT L L  N++S+L
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 536 PPELGLLEPSLQALRLDGNPLRSIRRTILD 565
           P  +    P L  L +  N L  I      
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSL 509
           +   + +      +       +L + + +  +   +R+ P  +L   +Q+ +L+L+   +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 510 QSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 566
           + I    F    ++ +L +  N I  LPP +    P L  L L+ N L S+ R I   
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (399), Expect = 3e-42
 Identities = 82/541 (15%), Positives = 179/541 (33%), Gaps = 78/541 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA- 293

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
                   +  P    L  L+ +                             LS +G   
Sbjct: 294 ---YCCEDLPAPFADRLIALKRK-------------------------EHALLSGQGSET 325

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSS 428
             +  E        ++D  +   + +  ++     +  TL   +  + +       + + 
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLRE 488
           L                       +  ++L +           S L  L+ +  R +   
Sbjct: 386 LDGTLQQA----------------VGQIELQHATEEQ------SPLQLLRAIVKRYEEMY 423

Query: 489 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 548
                ++   +R  D+ Q+    + E    L  L     +D  +++    L  L    Q 
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG--EADLALASANATLQELVVREQN 481

Query: 549 L 549
           L
Sbjct: 482 L 482

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  153 bits (387), Expect = 1e-40
 Identities = 60/420 (14%), Positives = 131/420 (31%), Gaps = 52/420 (12%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQVV-FAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +  + PE  S A +  + L  NK+     A+     +L    L  N         F 
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDI------LRLQQLRI 501
                ++  ++                     +       + P         L+ ++  +
Sbjct: 259 S-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRR 561
           L    +  + +    +N     E+D        +  ++ L + +   L      L     
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (309), Expect = 3e-30
 Identities = 66/517 (12%), Positives = 139/517 (26%), Gaps = 107/517 (20%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKI-PDEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E                          DL   S +  LD+  N +     
Sbjct: 62  LLNLSSNVLYETL------------------------DLESLSTLRTLDLNNNYVQ---- 93

Query: 178 NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
                                    +     +  L    N I  +  S          Y+
Sbjct: 94  ------------------------ELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYL 127

Query: 238 GNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL---RLSVLDLSNNSLSGLPPE 293
            NN ++ L   + G  S++  LDL  N++              L  L+L  N +  +  +
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +     L+ L L+ N L  +     +         +                        
Sbjct: 188 VV-FAKLKTLDLSSNKLAFMGPEFQS------AAGVT----------------------- 217

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN 413
                   +SL    L  I   +  +  +   DL  N             + +   +++ 
Sbjct: 218 -------WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL----PENP 469
            +K          +  +           +P+     +  L+  + +              
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 470 PFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG----FKNLTSLT 523
              +    +E+   + Q R     +    Q    L+  + +L             L    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 524 ELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 560
           +  +    +     E   L+     ++         +
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 1e-28
 Identities = 61/385 (15%), Positives = 108/385 (28%), Gaps = 75/385 (19%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 492 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 551
            +   Q L   DL  N             +     ++   +  L  +             
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 552 DGNPLRSIRRTILDRGTKAVLKYLK 576
                  +     DR      K   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHA 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (387), Expect = 1e-41
 Identities = 68/396 (17%), Positives = 148/396 (37%), Gaps = 51/396 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              L      I ++     +L       +    ++++     EL  +  L V+   +  I
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I   T L   + + NQ+ ++   L   + L++     N IT +   L + + + +L 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  + ++ +S   +A+ T +  L    N        + +++ L  L + ++++  +   I
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-I 173

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +    L    +  N +  +   L  L+ L     + NQ+ +    A   RL+ L + NN 
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           ++ L P +  ++ L  L +  N +  + +++ +      L  L+                
Sbjct: 233 ITDLSP-LANLSQLTWLEIGTNQISDI-NAVKD------LTKLK---------------- 268

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASL 405
                          L++    +S I   +    ++  L L+ N +     E +    +L
Sbjct: 269 --------------MLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
            TL LS+N I D     L SLS +      N  +++
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (368), Expect = 6e-39
 Identities = 75/397 (18%), Positives = 145/397 (36%), Gaps = 55/397 (13%)

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
           + L      +  +     A        +  K  +     T   L  + +L +   ++ SI
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVASI 59

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
              I    +L    +  N ++ +   L  L KL  L + +N++ +         L  L L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           + +++S + P +  +T +  L L  N   +  S L N      +  L             
Sbjct: 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSN------MTGL------------- 157

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                              L++    +  +   I    ++  L L+ N I+++ P L+S 
Sbjct: 158 -----------------NYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASL 198

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            SL       N+I D     + +++ L+ LK+ NN +  +      ++  L  L++  N 
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQ 254

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
           I+ +        L  L+ L +        + +  L QL  L L+ N L +   E    LT
Sbjct: 255 ISDIN---AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 521 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
           +LT L LS N+I+ + P   L    + +       ++
Sbjct: 312 NLTTLFLSQNHITDIRPLASL--SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 4e-26
 Identities = 55/311 (17%), Positives = 115/311 (36%), Gaps = 48/311 (15%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
              L++     L    + +   +     ++ L ++   ++ +   I  +T L  L L GN
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN 76

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            +  + S L N      L  L                                L +    
Sbjct: 77  QITDI-SPLSN------LVKL------------------------------TNLYIGTNK 99

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           ++ I + +     + +L L+ ++I ++ P L++   + +L L  N         L++++ 
Sbjct: 100 ITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTG 156

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLRE 488
           L+ L +  + ++ V      ++  L  L L+YN   + +  P +SL  L      +    
Sbjct: 157 LNYLTVTESKVKDVT--PIANLTDLYSLSLNYN--QIEDISPLASLTSLHYFTAYVNQIT 212

Query: 489 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 548
             T +  + +L  L +  N +  +     NL+ LT L++  N IS +     L    L+ 
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVKDL--TKLKM 269

Query: 549 LRLDGNPLRSI 559
           L +  N +  I
Sbjct: 270 LNVGSNQISDI 280

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  146 bits (371), Expect = 8e-40
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (349), Expect = 9e-37
 Identities = 55/292 (18%), Positives = 106/292 (36%), Gaps = 48/292 (16%)

Query: 276 RLSVLDLSNNSLSGLPPEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R  +  ++++SL      + +    +++L L+GNPL  +                     
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--------------------- 49

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                         +   T+L    + L+L    L     ++     +  LDL+ N +QE
Sbjct: 50  ----------SAADLAPFTKL----ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE 94

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           L        S++TL  + N I     +      ++    L NN +  +          +Q
Sbjct: 95  LLV----GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 455 ILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSI 512
            LDL  N I ++      +S   L+ L L+   + +    ++   +L+ LDLS N L  +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM 206

Query: 513 PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 564
              F++   +T + L +N +  +   L     +L+   L GN          
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFS-QNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 2e-35
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 15/260 (5%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIP-DEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I  ++     +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL 313
           +     L    L GN     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 3e-33
 Identities = 54/322 (16%), Positives = 92/322 (28%), Gaps = 53/322 (16%)

Query: 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTL 300
           A+       ++     +  + LK+      Q    +  LDLS N LS +    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
             L L+ N L               L  LR                              
Sbjct: 61  ELLNLSSNVLYET-------LDLESLSTLR------------------------------ 83

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L L    +  +         I  L  + N+I  +          + + L+ NKI    D
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                 S +  L L  N +  V           L+ L+L YN I  +           L+
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---VVFAKLK 194

Query: 479 ELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            L L   +L     +      +  + L  N L  I +  +   +L   DL  N       
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 538 ELGLLEPSLQALRLDGNPLRSI 559
                + + +   +    ++ +
Sbjct: 255 RDFFSK-NQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 3e-31
 Identities = 60/362 (16%), Positives = 120/362 (33%), Gaps = 50/362 (13%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQV-VFAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGF 447
            N +  + PE  S A +  + L  NK+     A+     +L    L  N        D F
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 448 KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQN 507
                +Q +          +N    ++P L   Y      + P         R++ L  +
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH-YGAYCCEDLPAPFA----DRLIALGHH 313

Query: 508 SL 509
             
Sbjct: 314 HH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (308), Expect = 4e-31
 Identities = 60/375 (16%), Positives = 107/375 (28%), Gaps = 75/375 (20%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 492 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 551
            +   Q L   DL  N             +     ++   +  L  +             
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 552 DGNPLRSIRRTILDR 566
                  +     DR
Sbjct: 292 GAYCCEDLPAPFADR 306

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  151 bits (383), Expect = 2e-39
 Identities = 73/432 (16%), Positives = 134/432 (31%), Gaps = 76/432 (17%)

Query: 143 KASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           +   N     PE     S +    V     + + + ++   +  +T              
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-------------- 49

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLD 259
               L+    +    + +  +P+++      +    + +  +  +          +  L 
Sbjct: 50  ----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 260 LHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSS 316
           +  N ++       Q    L+VL L  N LS LP  I      L  L ++ N L  +   
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
                       L+                               L L    L+ +   +
Sbjct: 166 TFQA-----TTSLQ------------------------------NLQLSSNRLTHVDLSL 190

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
                +   ++S N +  L   ++    ++ L  S N I      +   L+ L    L +
Sbjct: 191 IP--SLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK---LQH 241

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDIL 494
           N L         + P L  +DLSYN +  +  +P F  +  L+ LY+   +L        
Sbjct: 242 NNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQ 298

Query: 495 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 554
            +  L++LDLS N L  +         L  L L  N+I  L         +L+ L L  N
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHN 355

Query: 555 PLRSIRRTILDR 566
                    L R
Sbjct: 356 DWDCNSLRALFR 367

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  140 bits (353), Expect = 2e-35
 Identities = 109/546 (19%), Positives = 185/546 (33%), Gaps = 44/546 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
            LNL++  + ++    +              A  +QKL +  N I  L   + +N+PLLT
Sbjct: 79  LLNLNDLQIEEIDTYAFAY------------AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL +  N LS LP  I      L +L +S N++ +I D+   + T+L     SSN+L  +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
             SL    +L     S N +++L         + +LD   N + V+   +      LT L
Sbjct: 187 DLSLIP--SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVE---LTIL 237

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE 248
               N L      + +   L+ +DL  N +  I          L   Y+ NN L AL   
Sbjct: 238 KLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307
              +  L  LDL  N L        Q  RL  L L +NS+  L        TL+ L L+ 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSH 354

Query: 308 NPLRT--LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL- 364
           N      LR+   N   PA+    +    + +       KE       RL       S+ 
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
           E +  +       +     +      + Q   P   +      +   R +++   +  + 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM 484
               L  L  + +   +        +                 N  F+ L   Q   LR 
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN----------LNKVFTHLKERQAFKLRE 524

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELGLL 542
                     + ++   L+    +L+   +    K      E  L    +  L  +    
Sbjct: 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584

Query: 543 EPSLQA 548
             + + 
Sbjct: 585 PDTRRV 590

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  134 bits (338), Expect = 2e-33
 Identities = 89/566 (15%), Positives = 184/566 (32%), Gaps = 85/566 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
             +                        +  K++ L +  N L  + ++   + T L  L 
Sbjct: 140 RGI----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
            S N L  +   +  +  L   ++  N + ++   I    ++ E    +N+++ +   + 
Sbjct: 178 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV- 230

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
              +L  L L  N L +         L  +DLS N L  +      KM  L +L ++ N 
Sbjct: 231 -NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           L  L            +  L+                               L L   +L
Sbjct: 290 LVALNLYGQP------IPTLK------------------------------VLDLSHNHL 313

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
             +     +   +  L L  NSI  L    S+  +L+ L LS N      +++     ++
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWD--CNSLRALFRNV 369

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREA 489
           +   +D+           +      +     +   L     + +L  + E   R Q R +
Sbjct: 370 ARPAVDDADQHCKIDYQLEH----GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425

Query: 490 PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 549
            TD +   Q     ++Q     +    +    + EL      ++    +   L   L A 
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485

Query: 550 RLDGNPLRSIRRTILDRGTKAVLKYL 575
                    + +  L R +  + K  
Sbjct: 486 IDTNLRRYRLPKDGLARSSDNLNKVF 511

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  145 bits (367), Expect = 4e-38
 Identities = 62/291 (21%), Positives = 104/291 (35%), Gaps = 45/291 (15%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +  +   LS +P  I   +  R L L  N ++ +++          L +L   
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRH-----LHHLE-- 102

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 103 ----------------------------VLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQN 507
           +  L+ L+L     ++ + P  + L  L+EL +      E        L  L+ L +  +
Sbjct: 195 LFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 508 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
            +  I    F  L SL EL+L+ NN+S+LP +L      L  L L  NP  
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  137 bits (347), Expect = 2e-35
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +   ++ L+L   N+  I ++ +     +  L L RNSI+++     +  ASL TL L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPP 470
           N +   P      LS L  L L NNP+  +PS  F  +P L  LDL     +  + E   
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA- 191

Query: 471 FSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 528
           F  L +L+ L L M  +++ P  +  L  L  L++S N    I  G F  L+SL +L + 
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 529 DNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
           ++ +S +      GL   SL  L L  N L S+   +  
Sbjct: 251 NSQVSLIERNAFDGL--ASLVELNLAHNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  130 bits (328), Expect = 8e-33
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 10/187 (5%)

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            + +K+  +R  + E+P  +   ++ + L L  N I+         L  L  L+L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 440 RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-L 496
           RQ+    F  +  L  L+L  N +  +P    F  L  L+EL+LR   +   P+     +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGA-FEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 497 QQLRILDLSQ-NSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 554
             L  LDL +   L+ I EG F+ L +L  L+L   NI  +P    L    L+ L + GN
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL--VGLEELEMSGN 228

Query: 555 PLRSIRR 561
               IR 
Sbjct: 229 HFPEIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 2e-28
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  I    +     +  N +  + A+    L  L  L L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 266 KEYCVEA-CQL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           ++  V A   L  L+ L+L +N L+ +P      ++ LR+L L  NP+ ++ S   N   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-- 169

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  L                                L L  +  L  I    +E   
Sbjct: 170 ---VPSLM------------------------------RLDLGELKKLEYISEGAFEGLF 196

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L   +I+++P  L+    L+ L +S N   +        LSSL  L + N+ + 
Sbjct: 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F  +  L  L+L++N ++SLP +  F+ L +L EL+L 
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 5e-25
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
                +  + R L +VP  +  N                + L L  NNI+ ++ D  R+L
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---------------TRYLNLMENNIQMIQADTFRHL 98

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             L VL +  N + ++   A   L  L +L++  N +  IP       + L +    +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSN 177
           ++ +PS       SL   L+L +       +  + E        +  L++    +  + N
Sbjct: 159 IESIPSYAFNRVPSL-MRLDLGE----LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEF 235
             +     L EL  S N    +   +   LS L +L +  +++  I   +  G  SL E 
Sbjct: 214 --LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            + +N LS+LP +    L  L  L LH N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 8e-21
 Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+   L E+P  +    R LNL       N I  +  D       +  L +  N +  +
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLM-----ENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    L  +       L  L  L+L    +K+       + L  L++S N    + 
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 292 PE-IGKMTTLRKLLLTGNPLRTL 313
           P     +++L+KL +  + +  +
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLI 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  140 bits (355), Expect = 7e-38
 Identities = 63/216 (29%), Positives = 84/216 (38%), Gaps = 13/216 (6%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
                S     L A+P  I       ++ L  N I  +P     +C +L  L L  N + 
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 417 DWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
               A  T L+ L  L L +N  LR V    F  +  L  L L    +  L     F  L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGL 128

Query: 475 PHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
             LQ LYL+   L+  P D  R L  L  L L  N + S+PE  F+ L SL  L L  N 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 532 ISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
           ++ + P     L    L  L L  N L ++    L 
Sbjct: 189 VAHVHPHAFRDL--GRLMTLYLFANNLSALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  137 bits (347), Expect = 8e-37
 Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +   S+ + L G  +S +P+        +T L L  N +  +     +  A L+ L LS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 413 N-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
           N +++    A    L  L  L LD   L+++    F+ +  LQ L L  N + +LP++  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT- 148

Query: 471 FSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 527
           F  L +L  L+L   ++   P    R L  L  L L QN +  +    F++L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 528 SDNNISALPPELGLLEPSLQALRLDGNPLR 557
             NN+SALP E      +LQ LRL+ NP  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (251), Expect = 1e-23
 Identities = 60/277 (21%), Positives = 95/277 (34%), Gaps = 64/277 (23%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
               Q  + ++P  I    +    ++  N +S +PA        L  L LHSN L     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--- 70

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYL 329
                      +   + +GL         L +L L+ N  LR++  +  +G     L  L
Sbjct: 71  -----------IDAAAFTGLA-------LLEQLDLSDNAQLRSVDPATFHG-----LGRL 107

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L L+   L  +   ++     +  L L 
Sbjct: 108 H------------------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N++Q LP +      +L  L L  N+I   P+     L SL  L L  N +  V    F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           +D+  L  L L  N +++LP     + L  LQ L L 
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 44/264 (16%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
               + +   + L+ VP  +                   Q++ L  N I  +     R  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRAC 55

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             LT+L +  N L+ + A A   L +L+ LD+S N                       QL
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN----------------------AQL 93

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + +  +       L         +  L        + +  L ++ N L  L ++      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 185 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNAL 242
            LT L    N ++ +PE     L  L RL LHQNR+  +          L   Y+  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SALPAE-LGKLSKLGTLDLHSNQL 265
           SALP E L  L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
            C    L+ +P  +             N I+ +P      C  ++ L +  N L  +   
Sbjct: 17  SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEF 235
                 +L +L  S N       P T   L RL  L L +  +  +   +  G  +L   
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGL 290
           Y+ +NAL ALP +    L  L  L LH N++    V     R    L  L L  N ++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 PPEI-GKMTTLRKLLLTGNPLRTL 313
            P     +  L  L L  N L  L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 54/255 (21%), Positives = 86/255 (33%), Gaps = 52/255 (20%)

Query: 65  RNLPL-LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
             +P     + +  N++S +PA +      L  L +  N + +I            F   
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FT-- 77

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIA 181
              L  L       L+LSD    N  + S+         ++  L ++   L  L      
Sbjct: 78  --GLALL-----EQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----- 121

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
                             P     L+ L  L L  N + ++P        +L   ++  N
Sbjct: 122 ------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GK 296
            +S++P      L  L  L LH N++      A     RL  L L  N+LS LP E    
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 297 MTTLRKLLLTGNPLR 311
           +  L+ L L  NP  
Sbjct: 224 LRALQYLRLNDNPWV 238

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  144 bits (364), Expect = 1e-37
 Identities = 80/437 (18%), Positives = 157/437 (35%), Gaps = 43/437 (9%)

Query: 47  LQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
               + A   ++         L  LT L+  ++ ++++   I +L  L  L  + N+I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   +   T L    C SN+L  L   +     L+      N +T L   ++    ++ L
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +   N LT +    ++  T LTEL    N      + +   ++L  LD   N+I  +   
Sbjct: 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-- 186

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +S    L       N ++ L   L +  +L  LD  SN+L E  V     +L+  D S N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYFDCSVN 243

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L+ L   +  ++ L  L      L  +  +               +L   +       K
Sbjct: 244 PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT------------QLIYFQAEGCRKIK 289

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           E  +T  T+L      L  +   ++ +   + +  ++  L L+   + EL   +S    L
Sbjct: 290 ELDVTHNTQL----YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKL 341

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
           ++L      I+D+    +  + +L+           +P +   +      + +S ++   
Sbjct: 342 KSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNN--SLTIAVSPDLLDQ 397

Query: 466 PENPPFSSLPHLQELYL 482
             NP             
Sbjct: 398 FGNPMNIEPGDGGVYDQ 414

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  127 bits (321), Expect = 7e-32
 Identities = 83/448 (18%), Positives = 145/448 (32%), Gaps = 75/448 (16%)

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
            V           +  S  +   L+     N+ IT +   +   + ++KL    N +T L
Sbjct: 23  EVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL 79

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
               ++  T LT L    N L  +   +  L++L  L+   N++  +   +S    L   
Sbjct: 80  D---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG 295
               N L+ +   +   ++L  LD H N+         Q +L+ LD S N ++ L   + 
Sbjct: 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VS 188

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
           +   L +L    N +    + L       L                              
Sbjct: 189 QNKLLNRLNCDTNNI----TKLDLNQNIQL------------------------------ 214

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
                 L      L+ I   +    ++T  D S N + EL   +S+ + L TL   +  +
Sbjct: 215 ----TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL 266

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
            +      T L             R++          L +LD     I  L      S  
Sbjct: 267 LEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLDCQAAGITELD----LSQN 317

Query: 475 PHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533
           P L  LYL   +L E   D+    +L+ L      +Q        + +L     ++    
Sbjct: 318 PKLVYLYLNNTELTE--LDVSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTI 374

Query: 534 ALPPELG-----LLEPSLQALRLDGNPL 556
            +P E        +  S   L   GNP+
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  124 bits (313), Expect = 9e-31
 Identities = 64/376 (17%), Positives = 126/376 (33%), Gaps = 43/376 (11%)

Query: 186 LTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
               +A+   +      +   L+ L  LD H + I  +   I     L +    +N ++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITT 78

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           L   L + + L  L   SN+L    V     +L+ L+   N L+ L   + +   L  L 
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLDVTPLT-KLTYLNCDTNKLTKLD--VSQNPLLTYLN 133

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
              N L  +  S              ++L E +        +  +T  T+L      L  
Sbjct: 134 CARNTLTEIDVSHN------------TQLTELDCHLNKKITKLDVTPQTQL----TTLDC 177

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
               ++ +   + +   + +L+   N+I +L   L+    L  L  S NK+ +     +T
Sbjct: 178 SFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VT 230

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L+ L+      NPL ++          L  L      +  +      +    L      
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEID----LTHNTQLIYFQAE 283

Query: 484 MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE 543
              +    D+    QL +LD     +  +         L  L L++  ++ L   +    
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHN- 338

Query: 544 PSLQALRLDGNPLRSI 559
             L++L      ++  
Sbjct: 339 TKLKSLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 52/254 (20%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L    NNI KL  DL     LT L+ S NKL+E+   +  L  L   D S N + ++
Sbjct: 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + + L    C    L E+   L     L  F+A          D+   +++  LD
Sbjct: 249 D--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLD 303

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            +   +T L    ++    L  L  +   L  +   +   ++L  L      I     S+
Sbjct: 304 CQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SV 357

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKL------GTLDLHSNQLKEYCVEACQLRLSVL 280
               +L   +        +P E    + L        LD   N +     +      +  
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 281 DLSNNSLSGLPPEI 294
            ++  +LS   P +
Sbjct: 418 TITWENLSTDNPAV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  142 bits (360), Expect = 3e-37
 Identities = 65/291 (22%), Positives = 108/291 (37%), Gaps = 45/291 (15%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +     +L  +P  I   T  R L L  N ++ ++ +         L++L   
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKH-----LRHLE-- 91

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 92  ----------------------------ILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQN 507
           +  L+ L+L+    +L E P  + L  L EL L    L        + L  L+ L + Q+
Sbjct: 184 LSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 508 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
            +Q I    F NL SL E++L+ NN++ LP +L      L+ + L  NP  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  137 bits (346), Expect = 2e-35
 Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +S  ++ L+L    +  I    ++    +  L LSRN I+ +     +  A+L TL L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPP 470
           N++   P+     LS L  L L NNP+  +PS  F  IP L+ LDL     ++ + E   
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA- 180

Query: 471 FSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 528
           F  L +L+ L L M  LRE P  +  L +L  LDLS N L +I  G F+ L  L +L + 
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 529 DNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
            + I  +       L   SL  + L  N L  +   +  
Sbjct: 240 QSQIQVIERNAFDNL--QSLVEINLAHNNLTLLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  130 bits (328), Expect = 6e-33
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 10/191 (5%)

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            + +K+   R +++E+P  +S   + + L L  N+I+         L  L  L+L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 440 RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-L 496
           R +    F  +  L  L+L  N + ++P    F  L  L+EL+LR   +   P+     +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGA-FVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 497 QQLRILDLSQ-NSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 554
             LR LDL +   L  I EG F+ L++L  L+L+  N+  +P    L    L  L L GN
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL--IKLDELDLSGN 217

Query: 555 PLRSIRRTILD 565
            L +IR     
Sbjct: 218 HLSAIRPGSFQ 228

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  116 bits (291), Expect = 6e-28
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  IS   +     +  N +  +       L  L  L L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 266 KEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +   + A      L+ L+L +N L+ +P      ++ L++L L  NP+ ++ S   N   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  LR                               L L  +  LS I    +E   
Sbjct: 159 ---IPSLR------------------------------RLDLGELKRLSYISEGAFEGLS 185

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L+  +++E+P  L+    L  L LS N +          L  L  L +  + ++
Sbjct: 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F ++  L  ++L++N +  LP +  F+ L HL+ ++L 
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 7e-25
 Identities = 56/306 (18%), Positives = 112/306 (36%), Gaps = 67/306 (21%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +    ++LR+VP+ +               + + + L L  N I+ +K    ++L  L 
Sbjct: 47  KVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +L +S N +  +   A   L  L +L++  N +  IP+      + L +    +N ++ +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTE 188
           PS                              + +LD+ E  +L+ +S       + L  
Sbjct: 152 PSYA----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L  +   L  +P  +  L +L  LDL  N + +I                          
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------------------- 226

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLL 305
              L  L  L +  +Q++     A      L  ++L++N+L+ LP ++   +  L ++ L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 306 TGNPLR 311
             NP  
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 4e-21
 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
            C    L+E+P  +    R LNL       N I  +          +  L +  N +  +
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLH-----ENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    LS +       LS L  L+L    L+E       ++L  LDLS N LS + 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 292 PEI-GKMTTLRKLLLTGNPLRTL 313
           P     +  L+KL +  + ++ +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVI 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  138 bits (351), Expect = 4e-37
 Identities = 61/296 (20%), Positives = 109/296 (36%), Gaps = 42/296 (14%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +  ++  L+ +P  I   ++  +L L  N L++L   + +  T   L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT--QLTK 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L  N            ++                 +     S       +  LDLS
Sbjct: 57  L--SLSSNG-----------LSF----------KGCCSQSDFGTTS-------LKYLDLS 86

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N +  +         L+ L    + +K     ++  SL +L  L + +   R   +  F
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 448 KDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILD 503
             +  L++L ++ N    +   +  F+ L +L  L L + QL +        L  L++L+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 504 LSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPLR 557
           +S N+  S+    +K L SL  LD S N+I     + L     SL  L L  N   
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  132 bits (334), Expect = 1e-34
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 15/220 (6%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNK 414
           S +  E+      L+++P+ I      T+L+L  N +Q LP         L  L LS N 
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 415 I--KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           +  K          +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 472 SSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNS-LQSIPEG-FKNLTSLTELDL 527
            SL +L  L +     R A   I   L  L +L ++ NS  ++     F  L +LT LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 528 SDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
           S   +  L P     L   SLQ L +  N   S+      
Sbjct: 183 SQCQLEQLSPTAFNSL--SSLQVLNMSHNNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  131 bits (331), Expect = 3e-34
 Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 16/223 (7%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL---PPELSSCASLQTLIL 410
           +  ++  L LE   L ++P  +++   ++TKL LS N +              SL+ L L
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPEN 468
           S N +          L  L  L   ++ L+Q+     F  +  L  LD+S+         
Sbjct: 86  SFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 469 PPFSSLPHLQELYLRM--QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTE 524
             F+ L  L+ L +           DI   L+ L  LDLSQ  L+ +    F +L+SL  
Sbjct: 145 I-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 525 LDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
           L++S NN  +L       L   SLQ L    N + + ++  L 
Sbjct: 204 LNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQ 244

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (283), Expect = 7e-28
 Identities = 57/282 (20%), Positives = 99/282 (35%), Gaps = 45/282 (15%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269
            +  +   + S+P+ I    S     + +N L +LP     KL++L  L L SN L    
Sbjct: 11  EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
             +        L  LDLS N +  +      +  L  L    + L+ +          ++
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSV 121

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITK 384
              LR+                       L      L +   +     + I+     +  
Sbjct: 122 FLSLRN-----------------------L----IYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           L ++ NS QE       +   +L  L LS+ +++        SLSSL  L + +N    +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  +K +  LQ+LD S N I +  +         L  L L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 4e-24
 Identities = 57/307 (18%), Positives = 92/307 (29%), Gaps = 64/307 (20%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  +++ L  VP  +  +                 +L L  N ++ L       L  LT
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---------------ATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 72  VLNVSHNKLSELPAAIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
            L++S N LS              LK LD+SFN ++ +         L   D   + LK+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           +                                +  LD+      V  N +    + L  
Sbjct: 116 MSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 189 LIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           L  + N       P+    L  L  LDL Q ++  +  +  +   SL    M +N   +L
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                  L+ L  LD   N +                     L   P      ++L  L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMT--------------SKKQELQHFP------SSLAFLN 254

Query: 305 LTGNPLR 311
           LT N   
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 6e-21
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+S  L  +P+ +      L L      +N + SLP       ++++KL +  N L+  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 176 SNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS--ISGCCS 231
                + +  T L  L  S N +  M      L +L  LD   + +  +          +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 232 LAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 287
           L    + +             LS L  L +  N  +E  +         L+ LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTL 313
             L P     +++L+ L ++ N   +L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 19/160 (11%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL- 482
           S + + C   ++  L  VP+           L+L  N + SLP    F  L  L +L L 
Sbjct: 8   SGTEIRC---NSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGV-FDKLTQLTKLSLS 60

Query: 483 --RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE- 538
              +  +   +        L+ LDLS N + ++   F  L  L  LD   +N+  +    
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 539 --LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 576
             L L   +L  L +     R     I +  +   L+ LK
Sbjct: 121 VFLSL--RNLIYLDISHTHTRVAFNGIFNGLSS--LEVLK 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  142 bits (359), Expect = 2e-36
 Identities = 95/475 (20%), Positives = 166/475 (34%), Gaps = 69/475 (14%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI- 203
           SN  +T +P+DL    +   L +  N ++ L    I+  + L  L  S N +  +   + 
Sbjct: 39  SNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
                L  LD+  NR+ +I        SL    +  N    LP   E G L+KL  L L 
Sbjct: 97  LFNQDLEYLDVSHNRLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 262 SNQLKE---YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           + + ++     V    L   +LDL +  + G   E  ++     L L  +P       + 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                     L + +L +       T   +L    T L+VT + +         +    W
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 378 EA----------------------------------------------------GEITKL 385
                                                                  E+   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 386 DLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP- 443
            LS +    +      S +S   L  ++N   D      ++L  L  L L  N L+    
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 444 -SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLR 500
            +   K++  L+ LD+S N + S   +   +    +  L L    L  +    L   +++
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVK 453

Query: 501 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
           +LDL  N + SIP+   +L +L EL+++ N + ++P  +     SLQ + L  NP
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  140 bits (355), Expect = 7e-36
 Identities = 101/530 (19%), Positives = 185/530 (34%), Gaps = 67/530 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ SNR+L  VP ++                   + L L+ N+I +L+  D+  L  L 
Sbjct: 35  MVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELR 79

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           VL +SHN++  L   +      L+ LDVS N +  I        +L   D S N    LP
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLP 137

Query: 131 SS--LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                G    L+    S      L         +S + ++     +      +     T 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           ++      N +     ++S      L  + I     +     +          L  +  +
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
             + +   ++ L                +  L++ N +++             +   +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRP--------VEYLNIYNLTITERID-------REEFTYSET 302

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L++L                   +       +      +        ++  +     M 
Sbjct: 303 ALKSLM---------------IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKDWPDA--ILTS 425
               PS        T L+ ++N   +   +  S    LQTLIL RN +K++     +  +
Sbjct: 348 CPPSPS------SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLP-HLQELYLR 483
           +SSL  L +  N L     D        + +L+LS N   L  +  F  LP  ++ L L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGS-VFRCLPPKVKVLDLH 458

Query: 484 M-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
             ++   P D+  LQ L+ L+++ N L+S+P+G F  LTSL  + L DN 
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  137 bits (346), Expect = 6e-36
 Identities = 58/219 (26%), Positives = 88/219 (40%), Gaps = 8/219 (3%)

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA 421
                +L++IPS +     +  LDLS N I  +    L  C +LQ L+L+ N I    + 
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
             +SL SL  L L  N L  + S  FK +  L  L+L  N   +L E   FS L  LQ L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 481 YLRM--QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 536
            +       +        L  L  L++  + LQS      K++ +++ L L       L 
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 537 PELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
                +  S++ L L    L +   + L  G    L   
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  115 bits (290), Expect = 2e-28
 Identities = 62/368 (16%), Positives = 128/368 (34%), Gaps = 63/368 (17%)

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           MP T+  +  L  +        S  +S+S C         + +L+++P+ L     + +L
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLS-CDRNGICKGSSGSLNSIPSGL--TEAVKSL 57

Query: 259 DLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           DL +N++    +    L+    L  L L++N ++ +  +    + +L  L L+ N L  L
Sbjct: 58  DLSNNRITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
            SS         L  L                                L+L G     + 
Sbjct: 116 SSSWFKP-----LSSLT------------------------------FLNLLGNPYKTLG 140

Query: 374 SEIWEAG--EITKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
                +   ++  L +    +  ++  +  +    L+ L +  + ++ +    L S+ ++
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREA 489
           S L L       +          ++ L+L            FS L   +   L       
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD---TFHFSELSTGETNSLI------ 251

Query: 490 PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 549
                +    R + ++  SL  + +    ++ L EL+ S N + ++P  +     SLQ +
Sbjct: 252 -----KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 550 RLDGNPLR 557
            L  NP  
Sbjct: 307 WLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (267), Expect = 2e-25
 Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 13/200 (6%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
             S  S+  +P  L+   ++++L LS N+I    ++ L    +L  L L +N +  +  D
Sbjct: 37  KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL--RLQQLRI 501
            F  +  L+ LDLSYN +++L  +  F  L  L  L L     +      L   L +L+I
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 502 LDLSQN-SLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLR 557
           L +    +   I    F  LT L EL++  +++ +  P+    +   ++  L L      
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI--QNVSHLILHMKQHI 211

Query: 558 SIRRTILDRGTKAVLKYLKD 577
            +    +D  +      L+D
Sbjct: 212 LLLEIFVDVTSSVECLELRD 231

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (261), Expect = 1e-24
 Identities = 55/300 (18%), Positives = 90/300 (30%), Gaps = 64/300 (21%)

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
           +  LDLSNN ++ +      +   L+ L+LT N + T+     +      L  L      
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-----LGSL------ 102

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQE 394
                                   + L L    LS + S        +T L+L  N  + 
Sbjct: 103 ------------------------EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 395 LPPE--LSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451
           L      S    LQ L +                L+ L  L++D + L+       K I 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510
            +  L L       L E         ++ L LR                   DL      
Sbjct: 199 NVSHLILHMKQHILLLEIF-VDVTSSVECLELR-----------------DTDLDTFHFS 240

Query: 511 SIPEG----FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 566
            +  G         +   + ++D ++  +   L  +   L  L    N L+S+   I DR
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQLKSVPDGIFDR 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (250), Expect = 4e-23
 Identities = 50/297 (16%), Positives = 105/297 (35%), Gaps = 34/297 (11%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLP 68
            +G    S+ SL  +P+ +                  ++ L L++N I  +   DL+   
Sbjct: 32  RNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQL 126
            L  L ++ N ++ +   +   L  L+ LD+S+N +  +        ++L   +   N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 127 KELP--SSLGRCLNLSDFK-ASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K L   S       L   +  + +  T +     A  + + +L+++ + L       + S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 183 WTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP---------SSISGCCSL 232
              ++ LI        + E      S +  L+L    + +           +S+    + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSL 287
               + + +L  +   L ++S L  L+   NQLK            L  + L  N  
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 553
           L   +  I   S  SL SIP G     ++  LDLS+N I+ +         +LQAL L  
Sbjct: 28  LSCDRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 554 NPLRSI 559
           N + +I
Sbjct: 86  NGINTI 91

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  134 bits (340), Expect = 2e-35
 Identities = 64/302 (21%), Positives = 113/302 (37%), Gaps = 33/302 (10%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++   T L  L L  N +  ++           LK 
Sbjct: 25  CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKN-----LKN 77

Query: 329 LRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L +  L  N+ S+ S           +L    + L L    L  +P ++ +   + +L +
Sbjct: 78  LHTLILINNKISKIS---PGAFAPLVKL----ERLYLSKNQLKELPEKMPKT--LQELRV 128

Query: 388 SRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLSCLKLDNNPLRQVPS 444
             N I ++     +    +  + L  N +K     +     +  LS +++ +  +  +P 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRI 501
                   L  L L  N I  +        L +L +L L    +       L     LR 
Sbjct: 189 GLPPS---LTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL------PPELGLLEPSLQALRLDGNP 555
           L L+ N L  +P G  +   +  + L +NNISA+      PP     + S   + L  NP
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 556 LR 557
           ++
Sbjct: 305 VQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  131 bits (332), Expect = 3e-34
 Identities = 64/347 (18%), Positives = 127/347 (36%), Gaps = 70/347 (20%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNN 285
           C L      +  L  +P +L        LDL +N++ E  ++         L  L L NN
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86

Query: 286 SLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +S + P     +  L +L L+ N L+ L           + K L+              
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELP--------EKMPKTLQ-------------- 124

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE---LS 400
                           EL +    ++ +   ++    ++  ++L  N ++    E     
Sbjct: 125 ----------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 461 N-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--- 515
           N I+++      ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I      
Sbjct: 226 NSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 516 ----FKNLTSLTELDLSDNNI--SALPPEL--GLLEPSLQALRLDGN 554
                    S + + L  N +    + P     +      A++L   
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV--YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (315), Expect = 7e-32
 Identities = 66/337 (19%), Positives = 123/337 (36%), Gaps = 61/337 (18%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      +  +P  +      A   + NN ++ +       L  L TL L +N++ +   
Sbjct: 36  VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
            A    ++L  L LS N L  LP ++    TL++L +  N +  +R S+ NG     L  
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG-----LNQ 146

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEA-GEITKL 385
           +                                + L    L  S I +  ++   +++ +
Sbjct: 147 MI------------------------------VVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            ++  +I  +P  L    SL  L L  NKI     A L  L++L+ L L  N +  V + 
Sbjct: 177 RIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLRE-------APTDILRL 496
              + P L+ L L+ N +  +P     +   ++Q +YL    +          P    + 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 497 QQLRILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 530
                + L  N +Q   I    F+ +     + L + 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 2e-28
 Identities = 60/315 (19%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L  VP ++                 D   L L +N I ++K+   +NL  L 
Sbjct: 35  VVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N + ++P+       L +     N++ ++ 
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVR 137

Query: 131 S-SLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
                    +   +   N + S            K+S + +    +T +   L  S   L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---L 194

Query: 187 TELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA 244
           TEL    N +  +   ++  L+ L +L L  N I ++ + S++    L E ++ NN L  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 245 LPAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSL--SGLPPEI 294
           +P  L     +  + LH+N +                +   S + L +N +    + P  
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 295 -GKMTTLRKLLLTGN 308
              +     + L   
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 4e-25
 Identities = 65/382 (17%), Positives = 123/382 (32%), Gaps = 99/382 (25%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L ++P  +        LD+  N I +I                       
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIK---------------------- 68

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   NL      NN I+ +     A   K+ +L +  N+L  L   +  +   L E
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQE 125

Query: 189 LIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI---PSSISGCCSLAEFYMGNNALSA 244
           L   +N +  + +++   L+++I ++L  N + S      +  G   L+   + +  ++ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +P  L     L  L L  N++ +              +   SL GL         L KL 
Sbjct: 186 IPQGL--PPSLTELHLDGNKITK--------------VDAASLKGLN-------NLAKLG 222

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L+ N +  + +  +         +LR                              EL L
Sbjct: 223 LSFNSISAVDNGSLAN-----TPHLR------------------------------ELHL 247

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
               L  +P  + +   I  + L  N+I  +           +  AS   + L  N ++ 
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    +    +   + ++L N 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  134 bits (339), Expect = 4e-35
 Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 37/319 (11%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           L +L    + +   C   C   L V+  S+  L  +P EI        L L  N +  LR
Sbjct: 16  LDSLPPTYSAM---CPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELR 70

Query: 315 SSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
                G     L++L +  L  N+    S   E   +   +L    ++L +   +L  IP
Sbjct: 71  KDDFKG-----LQHLYALVLVNNK---ISKIHEKAFSPLRKL----QKLYISKNHLVEIP 118

Query: 374 SEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLS 430
             +  +  + +L +  N I+++P    S   ++  + +  N +++          L  L+
Sbjct: 119 PNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLRE 488
            L++    L  +P D  +    L  L L +N I ++           L  L L   Q+R 
Sbjct: 176 YLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRM 231

Query: 489 APTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE------LGL 541
                L  L  LR L L  N L  +P G  +L  L  + L  NNI+ +          G+
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 542 LEPSLQALRLDGNPLRSIR 560
                  + L  NP+    
Sbjct: 292 KRAYYNGISLFNNPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (312), Expect = 2e-31
 Identities = 66/333 (19%), Positives = 114/333 (34%), Gaps = 65/333 (19%)

Query: 207 SRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQ 264
                LDL  N I  +      G   L    + NN +S +  +    L KL  L +  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 265 LKEYCVEACQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           L E  +       L  L + +N +  +P  +   +  +  + + GNPL            
Sbjct: 114 LVE--IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL------------ 159

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382
                                 +           +    L +    L+ IP ++ E   +
Sbjct: 160 ----------------------ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET--L 195

Query: 383 TKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
            +L L  N IQ +  E L   + L  L L  N+I+   +  L+ L +L  L LDNN L +
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500
           VP+ G  D+ +LQ++ L  N I  +  N  F  +                   ++     
Sbjct: 256 VPA-GLPDLKLLQVVYLHTNNITKVGVND-FCPVGFG----------------VKRAYYN 297

Query: 501 ILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 530
            + L  N +    +    F+ +T    +   + 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (311), Expect = 2e-31
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 13/211 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
           + +    + L A+P EI  + + T LDL  N I EL  +       L  L+L  NKI   
Sbjct: 36  RVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
            +   + L  L  L +  N L ++P +       L  L +  N I  +P+   FS L ++
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGV-FSGLRNM 149

Query: 478 QELYLRM-QLREA--PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
             + +    L  +          +L  L +S+  L  IP+      +L EL L  N I A
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQA 207

Query: 535 LPPELGLLEPSLQALRLDGNPLRSIRRTILD 565
           +  E  L    L  L L  N +R I    L 
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (289), Expect = 2e-28
 Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 35/291 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L+ VP E+               + D   L L +N+I +L++D  + L  L 
Sbjct: 37  VVQCSDLGLKAVPKEI---------------SPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N +++IP      ++LV+     N+++++P
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVP 139

Query: 131 -SSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                   N++  +   N + +        D  K++ L +   KLT +  +L  +   L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LN 196

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           EL    N +  +    +   S+L RL L  N+I  I +   S   +L E ++ NN LS +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 246 PAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSLS 288
           PA L  L  L  + LH+N + +              +   + + L NN + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 59/303 (19%), Positives = 105/303 (34%), Gaps = 60/303 (19%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L N  + ++  + +K                L  L+L +N I K+ E     L  L 
Sbjct: 58  LLDLQNNDISELRKDDFKGLQ------------HLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            L +S N L E+P  +     L  L +  N I K+P  +      +   +   N L+   
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 131 SSLG--RCLNLSDFKASNNCITSLPEDL----------------------ADCSKMSKLD 166
              G    L L+  + S   +T +P+DL                         SK+ +L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  N++ ++ N  ++    L EL    N L+ +P  +  L  L  + LH N I  +    
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG--- 280

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDL 282
                        N    +   + K +    + L +N +  + V+     C      +  
Sbjct: 281 ------------VNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 283 SNN 285
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 70/382 (18%), Positives = 120/382 (31%), Gaps = 100/382 (26%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L  +P  I        LD+  N I ++                       
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELR---------------------- 70

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   +L      NN I+ + E   +   K+ KL +  N L  +  NL         
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------- 121

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPA 247
                             S L+ L +H NRI  +P  + SG  ++    MG N L     
Sbjct: 122 -----------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 248 ELGKLS--KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLL 304
           E G     KL  L +   +L     +  +  L+ L L +N +  +  E   + + L +L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +R + +  ++      L  LR                              EL L
Sbjct: 224 LGHNQIRMIENGSLSF-----LPTLR------------------------------ELHL 248

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
           +   LS +P+ + +   +  + L  N+I ++              A    + L  N +  
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    A    ++    ++  N 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  136 bits (344), Expect = 2e-34
 Identities = 72/450 (16%), Positives = 141/450 (31%), Gaps = 86/450 (19%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLP 68
             S S N    ++     + +  +D+             +K  L   N  +    L+   
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDK------------WEKQALPGENRNEAVSLLKECL 57

Query: 69  L--LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
           +   + L ++   LS LP  +     +  L+++ N+++ +P+   S   L   D   N+L
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALISLPELPAS---LEYLDACDNRL 112

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP       +L      NN +T LPE                              +L
Sbjct: 113 STLPELPASLKHL---DVDNNQLTMLPELP---------------------------ALL 142

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
             + A  N L  +PE   SL  L    +  N++  +P       SL    +  N L +LP
Sbjct: 143 EYINADNNQLTMLPELPTSLEVL---SVRNNQLTFLPELPE---SLEALDVSTNLLESLP 196

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           A   +       ++                        N ++ +P  I  +     ++L 
Sbjct: 197 AVPVRNHHSEETEIF------------------FRCRENRITHIPENILSLDPTCTIILE 238

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL-- 364
            NPL +     ++  T     +         D + +T    L    T     +K+  +  
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 365 ---------EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL--QTLILSRN 413
                         SA    + +          R  +     +LS+ A L  Q+  ++ +
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
             +   D +  + ++L    L +     + 
Sbjct: 359 ATESCEDRVALTWNNLRKTLLVHQASEGLF 388

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  125 bits (314), Expect = 2e-30
 Identities = 67/305 (21%), Positives = 112/305 (36%), Gaps = 63/305 (20%)

Query: 280 LDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
            +   N++SG   +         K  L G      R+  V+     L+            
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGE----NRNEAVSLLKECLINQFS-------- 62

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL L  +NLS++P  +    +IT L++++N++  LP  
Sbjct: 63  ----------------------ELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPEL 98

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
            +S   L+ L    N++   P+      +SL  L +DNN L  +P        +L+ ++ 
Sbjct: 99  PAS---LEYLDACDNRLSTLPE----LPASLKHLDVDNNQLTMLPEL----PALLEYINA 147

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGF 516
             N +  LPE         L+ L +R  QL   P      + L  LD+S N L+S+P   
Sbjct: 148 DNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVP 199

Query: 517 KNLTSLTE----LDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL 572
                  E        +N I+ +P  +  L      + L+ NPL S  R  L + T    
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 573 KYLKD 577
            +   
Sbjct: 259 YHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  122 bits (307), Expect = 1e-29
 Identities = 60/380 (15%), Positives = 114/380 (30%), Gaps = 59/380 (15%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSIS 227
           N ++    +  ++W    +        N     +    +++   L L++  + S+P ++ 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL- 78

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSL 287
               +    +  NAL +LP     L  L   D   N+L         L+   LD+ NN L
Sbjct: 79  -PPQITVLEITQNALISLPELPASLEYL---DACDNRLSTLPELPASLK--HLDVDNNQL 132

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
           + LP        L  +    N L  L         P L   L                  
Sbjct: 133 TMLPELPAL---LEYINADNNQLTML---------PELPTSLE----------------- 163

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         LS+    L+ +P        +  LD+S N ++ LP         + 
Sbjct: 164 -------------VLSVRNNQLTFLPELP---ESLEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 408 ----LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
                    N+I   P+ IL SL     + L++NPL     +                  
Sbjct: 208 TEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 464 SLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLT 523
           S+ +    +    L +           +D+ ++      +   N+  +  +   +  S  
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR 326

Query: 524 ELDLSDNNISALPPELGLLE 543
                   ++A   +L    
Sbjct: 327 NTSGFREQVAAWLEKLSASA 346

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  129 bits (327), Expect = 5e-34
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++    + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
              +  +L  L  L L +N L+ +P    + +P L +LD+S+N + SLP       L  L
Sbjct: 71  Q--VDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGA-LRGLGEL 126

Query: 478 QELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 534
           QELYL+  +L+  P  +L    +L  L L+ N+L  +P G    L +L  L L +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 535 LPPELGLLEPSLQALRLDGNP 555
           +P         L    L GNP
Sbjct: 187 IPKGFFGS-HLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  124 bits (314), Expect = 3e-32
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
            +++  + ++  LPP+L        L LS N +  +  A L   + L+ L LD   L ++
Sbjct: 13  LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQL 499
                  +P+L  LDLS+N + SLP      +LP L  L +   +L   P   L  L +L
Sbjct: 71  QV--DGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPL 556
           + L L  N L+++P G       L +L L++NN++ LP  L  GL   +L  L L  N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSL 184

Query: 557 RSIRRTILDR 566
            +I +     
Sbjct: 185 YTIPKGFFGS 194

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  107 bits (269), Expect = 4e-26
 Identities = 49/181 (27%), Positives = 67/181 (37%), Gaps = 14/181 (7%)

Query: 400 SSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
            S  AS   +   +  +   P  +    + L    L  N L             L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNL 62

Query: 459 SYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-F 516
                 L +     +LP L  L L   QL+  P     L  L +LD+S N L S+P G  
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 517 KNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKY 574
           + L  L EL L  N +  LPP L      P L+ L L  N L  +   +L+      L  
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPT--PKLEKLSLANNNLTELPAGLLNGLEN--LDT 176

Query: 575 L 575
           L
Sbjct: 177 L 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  102 bits (255), Expect = 3e-24
 Identities = 56/263 (21%), Positives = 89/263 (33%), Gaps = 62/263 (23%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C  +       ++    +L+ LPP++        L L+ N L T   + +          
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMP-----YTR 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                               +L+L+   L+ +  +      +  LDLS
Sbjct: 57  LT------------------------------QLNLDRAELTKLQVD-GTLPVLGTLDLS 85

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +Q LP    +  +L  L +S N++   P   L  L  L  L L  N L+ +P     
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQN 507
             P L+ L L+ N +  LP     + L +L  L                       L +N
Sbjct: 146 PTPKLEKLSLANNNLTELPAG-LLNGLENLDTLL----------------------LQEN 182

Query: 508 SLQSIPEGFKNLTSLTELDLSDN 530
           SL +IP+GF     L    L  N
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
           +C    L  LP  L +  + +    S N + +     L   +++++L+++  +LT L   
Sbjct: 16  NCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-- 71

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYM 237
           +  +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P     G   L E Y+
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 238 GNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI 294
             N L  LP  L     KL  L L +N L E           L  L L  NSL  +P   
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 295 GKMTTLRKLLLTGNP 309
                L    L GNP
Sbjct: 192 FGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           ++  +  + ++P  +         ++  N L       L   ++L  L+L   +L +  V
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +     L  LDLS+N L  LP     +  L  L ++ N L +L    + G    L     
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-EL----- 126

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSR 389
                                        +EL L+G  L  +P  +     ++ KL L+ 
Sbjct: 127 -----------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           N++ ELP  L +   +L TL+L  N +   P     S   L    L  NP
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +N   R+L  +P ++                 D   L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++L    G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L  L +     N + +LP  L     K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 83.2 bits (206), Expect = 8e-18
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
             +     +N     L+ LP  +        L +S N +           T L + +   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
            +L +L    G    L     S+N + SLP        ++ LDV  N+LT L    +   
Sbjct: 65  AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNA 241
             L EL    N L  +P  +     +L +L L  N +  +P+ + +G  +L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 242 LSALPAELGKLSKLGTLDLHSN 263
           L  +P        L    LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 8e-17
 Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 44/241 (18%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDL 282
            +S   S  E       L+ALP +L        L L  N L            RL+ L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
               L+ L  + G +  L  L L+ N L++L         P L + L             
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQLQSL---------PLLGQTL------------- 99

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-S 400
                       L      L +    L+++P       GE+ +L L  N ++ LPP L +
Sbjct: 100 ----------PAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L+ L L+ N + + P  +L  L +L  L L  N L  +P   F    +L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHG 204

Query: 461 N 461
           N
Sbjct: 205 N 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  128 bits (325), Expect = 7e-34
 Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 17/232 (7%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
           +     +      L+AIPS I    +  KLDL  N +  LP +       L+ L L+ NK
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           ++  P  I   L +L  L + +N L+ +P   F  +  L  L L  N + SLP    F S
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-VFDS 131

Query: 474 LPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           L  L  L L   +L+  P  +  +L  L+ L L  N L+ +PEG F  LT L  L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 531 NISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 582
            +  +P         L+ L+L  NP       I+         Y+   + + 
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII---------YMAKWLKKK 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  110 bits (276), Expect = 4e-27
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
           + +   +K+L L+   LS++PS+ +    ++  L L+ N +Q LP  +     +L+TL +
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + NK++  P  +   L +L+ L+LD N L+ +P   F  +  L  L L YN + SLP+  
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG- 151

Query: 470 PFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 526
            F  L  L+EL L   QL+  P     +L +L+ L L  N L+ +PEG F +L  L  L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 527 LSDN 530
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
              S++ S++ L  +P+ +                 D +KL L  N +  L       L 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI---------------PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 69  LLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQL 126
            L +L ++ NKL  LPA I  EL  L++L V+ N +  +P  +      L +     NQL
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 127 KELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWT 184
           K LP  +   L  L+      N + SLP+ + D  + + +L +  N+L  +        T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 185 MLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
            L  L    N L  +PE    SL +L  L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
             S+D S   +  IP  I + T   K D  SN+L  LPS     L  L     ++N + +
Sbjct: 18  KNSVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 152 LPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRL 209
           LP  +      +  L V  NKL  L   +      L EL   +N L  +P  +  SL++L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 210 IRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
             L L  N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 268 YCVEACQ--LRLSVLDLSNN 285
               A     +L +L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 43/232 (18%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           D    ++ +IPS+I       +  + +N LS+LP++   +L+KL  L L+ N+L+     
Sbjct: 22  DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 272 AC-QL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +L  L  L +++N L  LP  +  ++  L +L L  N L++L   + +  T  L   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KL--- 135

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
                                            LSL    L ++P  +++    + +L L
Sbjct: 136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 388 SRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             N ++ +P         L+TL L  N++K  P+    SL  L  L+L  NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  127 bits (322), Expect = 2e-33
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 9/214 (4%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
             L  ++K L L    L  + S  + +  E+  LDLSR  IQ +      S + L TLIL
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + N I+       + LSSL  L      L  + +     +  L+ L++++N I S     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 470 PFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRI----LDLSQNSLQSIPEGFKNLTSLT 523
            FS+L +L+ L L   +++      L  L Q+ +    LDLS N +  I  G      L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

Query: 524 ELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
           EL L  N + ++P  +     SLQ + L  NP  
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  120 bits (303), Expect = 9e-31
 Identities = 59/207 (28%), Positives = 80/207 (38%), Gaps = 33/207 (15%)

Query: 368 NLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSL 426
           N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D    SL
Sbjct: 18  NFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQ 485
           S LS L L  NP++ +    F  +  LQ L      +ASL   P    L  L+EL +   
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNV--- 131

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPE----L 539
                              + N +QS      F NLT+L  LDLS N I ++       L
Sbjct: 132 -------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 540 GLLEPSLQALRLDGNPLRSIRRTILDR 566
             +     +L L  NP+  I+      
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 49/240 (20%), Positives = 76/240 (31%), Gaps = 44/240 (18%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE- 267
            LDL  N +  + S        L    +    +  +       LS L TL L  N ++  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 268 -YCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
                +    L  L     +L+ L     G + TL++L +  N +++          P  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEY 144

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----G 380
              L                       T L    + L L    + +I             
Sbjct: 145 FSNL-----------------------TNL----EHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
               LDLS N +  + P       L+ L L  N++K  PD I   L+SL  + L  NP  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
              + L L+ N +  L      + P L VL++S  ++  +   A   L  L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 103 IMKIPDEIGSA-TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPED--LAD 158
           I  +     S  ++L K       L  L +   G    L +   ++N I S       ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
            + +  LD+  NK+  +    +     +  L                    + LDL  N 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           +  I         L E  +  N L ++P     +L+ L  + LH+N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 3e-19
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C      ++P +L    + L+LS      N +  L         ++  LD+   ++  +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +       +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEAC------QLRLSVLDLSNN 285
           E  + +N + +         L+ L  LDL SN+++              L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            ++ + P   K   L++L L  N L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
                 ++P +    +P   + LDLS+N +  L     F S P LQ L L   +++    
Sbjct: 15  MELNFYKIPDN----LPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIED 69

Query: 492 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 549
                L  L  L L+ N +QS+  G F  L+SL +L   + N+++L         +L+ L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 550 RLDGNPLRSI 559
            +  N ++S 
Sbjct: 130 NVAHNLIQSF 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 53/260 (20%), Positives = 85/260 (32%), Gaps = 53/260 (20%)

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273
            +     IP ++    S     +  N L  L +       +L  LDL   +++     A 
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 274 Q--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           Q    LS L L+ N +  L       +++L+KL+     L +L +  +            
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-------- 124

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA----GEITKLD 386
                                      T KEL++    + +      E       +  LD
Sbjct: 125 ---------------------------TLKELNVAHNLIQSFKLP--EYFSNLTNLEHLD 155

Query: 387 LSRNSIQELPPE-LSSCASLQ----TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           LS N IQ +    L     +     +L LS N +          +  L  L LD N L+ 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS 214

Query: 442 VPSDGFKDIPMLQILDLSYN 461
           VP   F  +  LQ + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 2e-32
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 63  DLRNLPLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVS-FNSIM-KIPDEIGSATALV 117
                  +  L++S   L     +P+++  L  L  L +   N+++  IP  I   T L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 118 KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT-V 174
               +   +   +P  L +   L     S N ++ +LP  ++    +  +  +GN+++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 175 LSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSL 232
           + ++  +   + T +  S+N L G +P T  +L+ L  +DL +N +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNS 286
            + ++  N+L+  L  ++G    L  LDL +N++     +   +   +  L  L++S N+
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKF-LHSLNVSFNN 279

Query: 287 LSGLPPEIGKMTTLRKLLLTGNP 309
           L G  P+ G +          N 
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (264), Expect = 4e-25
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 42/269 (15%)

Query: 59  KLKEDLRNLPLL----TVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI---MKIPDEI 110
           ++K+DL N   L       +  +      L     + + + +LD+S  ++     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 111 GSATALVKFDCSS-NQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDV 167
            +   L        N L   +P ++ +   L     ++  ++ ++P+ L+    +  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 168 EGNKLT--VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIR-LDLHQNRIL-SI 222
             N L+  +  +  I+S   L  +    N ++G +P++ GS S+L   + + +NR+   I
Sbjct: 133 SYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 223 PSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281
           P +     +LA   +  N L        G                             + 
Sbjct: 191 PPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNT----------------------QKIH 227

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L+ NSL+    ++G    L  L L  N +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (257), Expect = 3e-24
 Identities = 66/291 (22%), Positives = 109/291 (37%), Gaps = 50/291 (17%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G            GP P  +  L   
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIAKL--- 100

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNS 391
                               T+L      L +   N+S AIP  + +   +  LD S N+
Sbjct: 101 --------------------TQLHY----LYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 392 IQ-ELPPELSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLR-QVPSDGFK 448
           +   LPP +SS  +L  +    N+I    PD+  +     + + +  N L  ++P     
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 449 DIPMLQILDLSYNIAS--LPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLS 505
               L  +DLS N+          F S  + Q+++L    L      +   + L  LDL 
Sbjct: 197 L--NLAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 506 QNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
            N +  ++P+G   L  L  L++S NN+    P+ G L           N 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 19/209 (9%)

Query: 361 ELSLEGMNLS---AIPSEIWEAGEITKLDLS-RNSIQ-ELPPELSSCASLQTLILSRNKI 415
            L L G+NL     IPS +     +  L +   N++   +PP ++    L  L ++   +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 416 K-DWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IASLPENPPF 471
               PD + + + +L  L    N L   +P      +P L  +    N    ++P++  +
Sbjct: 114 SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS--Y 169

Query: 472 SSLPHL-QELYLRM-QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDL 527
            S   L   + +   +L  + P     L  L  +DLS+N L+      F +  +  ++ L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 528 SDNNISALPPELGLLEPSLQALRLDGNPL 556
           + N+++    ++GL   +L  L L  N +
Sbjct: 229 AKNSLAFDLGKVGLS-KNLNGLDLRNNRI 256

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  119 bits (299), Expect = 1e-29
 Identities = 55/208 (26%), Positives = 77/208 (37%), Gaps = 34/208 (16%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIK 416
           S  LS     L  +P  +        LDLS N++  L  E   +   +L +L+LS N + 
Sbjct: 20  SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                    + +L  L L +N L  +    F D+  L++L L  N I  +  N  F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMA 136

Query: 476 HLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNN 531
            LQ+LYL                      SQN +   P         L  L  LDLS N 
Sbjct: 137 QLQKLYL----------------------SQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 532 ISALPPELGLLEPSL--QALRLDGNPLR 557
           +  LP       P+     L L  NPL 
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  100 bits (250), Expect = 4e-23
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 26/183 (14%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
           L   +  L L   NLS + +E        +  L LS N +  +  E      +L+ L LS
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
            N +    + + + L +L  L L NN +  V  + F+D+  LQ L LS N I+  P    
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-L 155

Query: 471 FSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS- 528
                                    L +L +LDLS N L+ +P    + L +  +  L  
Sbjct: 156 IKDGNK-------------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 529 DNN 531
            NN
Sbjct: 197 HNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 96.5 bits (240), Expect = 8e-22
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           + + LSC       L  VP           +LDLS+N ++ L      + L +L  L L 
Sbjct: 19  ASNILSC---SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 72

Query: 484 M-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL- 539
              L    ++    +  LR LDLS N L ++ E  F +L +L  L L +N+I  +     
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 540 -GLLEPSLQALRLDGNPLRSIRRTILDRGTK 569
             +    LQ L L  N +      ++  G K
Sbjct: 133 EDM--AQLQKLYLSQNQISRFPVELIKDGNK 161

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 56/284 (19%), Positives = 94/284 (33%), Gaps = 85/284 (29%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            L+ S + L +VP    ++                  L L+HNN+ +L  +     L  L
Sbjct: 22  ILSCSKQQLPNVP----QSLP-----------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             L +SHN L+ + + A   +  L+ LD+S N +  + + +                 +L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------------FSDL 111

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                    L      NN I  +  +   D +++ KL +  N+++     LI        
Sbjct: 112 Q-------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---- 160

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
                            L +L+ LDL  N++  +P                  L  LPA 
Sbjct: 161 ----------------KLPKLMLLDLSSNKLKKLPL---------------TDLQKLPA- 188

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
                    L LH+N L   C   C+L           LS +  
Sbjct: 189 ----WVKNGLYLHNNPL--EC--DCKLYQLFSHWQYRQLSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 63/236 (26%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYC 269
           L   + ++ ++P S+      A   + +N LS L AE    +L+ L +L L  N L    
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 270 VEA-CQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            EA   +  L  LDLS+N L  L   +   +  L  LLL  N +  +  +         +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
             L+                              +L L    +S  P E+ +        
Sbjct: 136 AQLQ------------------------------KLYLSQNQISRFPVELIKD------- 158

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLDNNPLR 440
                        +    L  L LS NK+K  P   L  L +     L L NNPL 
Sbjct: 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPEL--GL 541
           L   P  +       +LDLS N+L  +        LT+L  L LS N+++ +  E    +
Sbjct: 30  LPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

Query: 542 LEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
             P+L+ L L  N L ++   +        L+ L
Sbjct: 88  --PNLRYLDLSSNHLHTLDEFLFSDLQA--LEVL 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  106 bits (267), Expect = 2e-26
 Identities = 32/218 (14%), Positives = 81/218 (37%), Gaps = 15/218 (6%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN-KIK 416
            ++  +   ++  IPS          L L    ++ +P    S+  ++  + +S +  ++
Sbjct: 13  EEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 417 DWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
                   +LS ++ +++ +   L  +  D  K++P+L+ L +    +   P+     S 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 475 PHLQELYLR--MQLREAPTDILR--LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530
                L +     +   P +  +    +   L L  N   S+     N T L  + L+ N
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189

Query: 531 N-ISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 565
             ++ +  +   G+       L +    + ++    L+
Sbjct: 190 KYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 13/156 (8%)

Query: 383 TKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKL-DNNP 438
           T +++    ++  + P+ L     L+ L +    +K +PD   + S      L++ DN  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 439 LRQVPSDGFKDIP-MLQILDLSYN-IASLPENPPFSSLPHLQELYLRM--QLREAPTDIL 494
           +  +P + F+ +      L L  N   S+     F+    L  +YL     L     D  
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-FN-GTKLDAVYLNKNKYLTVIDKDAF 200

Query: 495 R--LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 527
                   +LD+SQ S+ ++P    ++L  L   + 
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 118 KFDCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN-KLT 173
            F  +   ++ +PS     + L L         + ++P    ++   +S++ V  +  L 
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 174 VLSNNLIASWTMLTELIASKN--LLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGC 229
            L ++   + + +T +       L    P+ +  L  L  L +    +   P  + +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 230 CSLAEFYM-GNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS 283
                  +  N  ++++P     G  ++  TL L++N      V+       +L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 284 -NNSLSGLPPEI--GKMTTLRKLLLTGNPLRTL 313
            N  L+ +  +   G  +    L ++   +  L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 46  DLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFN- 101
             Q L L   ++  +      NLP ++ + VS +  L +L + +   L  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK---ASNNCITSLPEDLA 157
           ++  I  +       L      +  LK  P           F      N  +TS+P +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 158 D--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLD 213
              C++   L +  N  T +         +    +     L  + +    G  S    LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 214 LHQNRILSIPSSI 226
           + Q  + ++PS  
Sbjct: 212 VSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/253 (15%), Positives = 85/253 (33%), Gaps = 55/253 (21%)

Query: 67  LPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN 124
            P    L +    L  +P+ A   L  +  + VS + ++ ++            F     
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY---- 77

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
            L ++       + + +       +T +  D L +   +  L +    L +  +      
Sbjct: 78  NLSKV-----THIEIRN----TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--- 125

Query: 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN-RILSIPS-SISGCCS-LAEFYMGNN 240
                              + S      L++  N  + SIP  +  G C+      + NN
Sbjct: 126 -------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 241 ALSALPAELGKLSKLGTLDLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK 296
             +++       +KL  + L+ N+    + +          S+LD+S  S++ LP +   
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-- 224

Query: 297 MTTLRKLLLTGNP 309
           +  L++L+     
Sbjct: 225 LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 36/258 (13%), Positives = 81/258 (31%), Gaps = 62/258 (24%)

Query: 209 LIRLDLHQNRILSIPS-SISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHSNQL 265
              L L +  + +IPS + S   +++  Y+  +  L  L +     LSK+  +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
                               +L+ + P+   ++  L+ L +    L+     L    +  
Sbjct: 91  -------------------RNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD 130

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEI 382
           +   L                                   +   +++IP   ++    E 
Sbjct: 131 IFFIL--------------------------------EITDNPYMTSIPVNAFQGLCNET 158

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSL-SSLSCLKLDNNPLR 440
             L L  N    +     +   L  + L++NK +          + S  S L +    + 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 441 QVPSDGFKDIPMLQILDL 458
            +PS G + +  L   + 
Sbjct: 219 ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 47  LQKLILAHNN-IEKLKED-LRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNS 102
           +  + + +   +  +  D L+ LPLL  L + +  L   P    +    +   L+++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 103 -IMKIPDEI--GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLAD 158
            +  IP     G     +     +N    +         L       N  +T + +D   
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 159 --CSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              S  S LDV    +T L +  +     L   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  106 bits (267), Expect = 1e-25
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K+    +N+        +L  +T L+     ++ +   +  L+ L  L++  N I  
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   + + T + + + S N LK + S++    ++     ++  IT +   LA  S +  L
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL 134

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
            ++ N++T +S   +A  T L  L      ++ +   + +LS+L  L    N+I  I S 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SP 190

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           ++   +L E ++ NN +S +   L   S L  + L +  +    V      +    +   
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 286 SLSGLPPE 293
           S + + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 2e-23
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I     I  +      L     +    + +++      +L  + +L      +  I   +
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GV 59

Query: 111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
                L+  +   NQ+ +L + L     +++ + S N + ++   +A    +  LD+   
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
           ++T ++                          +  LS L  L L  N+I +I S ++G  
Sbjct: 118 QITDVTP-------------------------LAGLSNLQVLYLDLNQITNI-SPLAGLT 151

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           +L    +GN  +S L   L  LSKL TL    N++ +    A    L  + L NN +S +
Sbjct: 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 291 PPEIGKMTTLRKLLLTGNPL 310
            P +   + L  + LT   +
Sbjct: 211 SP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 13/201 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            +++    N++       +   IT L      +  +   +    +L  L L  N+I D  
Sbjct: 22  IKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              L +L+ ++ L+L  NPL+ V       +  ++ LDL+     + +  P + L +LQ 
Sbjct: 80  P--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST--QITDVTPLAGLSNLQV 133

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL   Q+      +  L  L+ L +    +  +     NL+ LT L   DN IS + P 
Sbjct: 134 LYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISPL 191

Query: 539 LGLLEPSLQALRLDGNPLRSI 559
             L  P+L  + L  N +  +
Sbjct: 192 ASL--PNLIEVHLKNNQISDV 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 11/200 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             LS  G  ++ I   +     +  L+L  N I +L P L +   +  L LS N +K+  
Sbjct: 44  TTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              +  L S+  L L +  +  V       +  LQ+L L  N   +    P + L +LQ 
Sbjct: 102 A--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLN--QITNISPLAGLTNLQY 155

Query: 480 LYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
           L +        T +  L +L  L    N +  I     +L +L E+ L +N IS + P  
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSPLA 214

Query: 540 GLLEPSLQALRLDGNPLRSI 559
                +L  + L    + + 
Sbjct: 215 NT--SNLFIVTLTNQTITNQ 232

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 53/310 (17%), Positives = 107/310 (34%), Gaps = 46/310 (14%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  I++   ++ +     + +    +         ++ +   +  L+ L  L+L  NQ
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           + +        +++ L+LS N L  +   I  + +++ L LT   +  + + L       
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAG----- 127

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
            L  L                              + L L+   ++ I S +     +  
Sbjct: 128 -LSNL------------------------------QVLYLDLNQITNI-SPLAGLTNLQY 155

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L +    + +L P L++ + L TL    NKI D     L SL +L  + L NN +  V  
Sbjct: 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDL 504
               +   L I+ L+    +       ++L     +        AP  I         +L
Sbjct: 212 -PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

Query: 505 SQNSLQSIPE 514
           + N    I  
Sbjct: 271 TWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 48/325 (14%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203
                I  +       +   K+    + +T       A    +T L A    +  + E +
Sbjct: 4   TQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGV 59

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263
             L+ LI L+L  N+I  + + +     + E  +  N L  + A +  L  + TLDL S 
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTST 117

Query: 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
           Q+ +    A    L VL L  N ++ + P +  +T L+ L +    +  L + L N    
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLAN---- 171

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
             L  L                                L  +   +S I S +     + 
Sbjct: 172 --LSKL------------------------------TTLKADDNKISDI-SPLASLPNLI 198

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ L  N I ++ P L++ ++L  + L+   I + P     +L       +       + 
Sbjct: 199 EVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255

Query: 444 SDGFKDIPMLQILDLSYNIASLPEN 468
                D       +L++N+ S   N
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ L L  N I  +   L  L  L  L++ + ++S+L   +  L  L +L    N I  I
Sbjct: 131 LQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S   L++    +NQ+ ++ S L    NL     +N  IT+ P    + + +    
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP-VFYNNNLVVPNV 245

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           V+G     ++   I+          + NL + +  
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 470 PFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 529
           P  +L +  ++               L  +  L      + +I EG + L +L  L+L D
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKD 72

Query: 530 NNISALPPELGLLEPSLQALRLDGNPLRSI 559
           N I+ L P   L    +  L L GNPL+++
Sbjct: 73  NQITDLAPLKNL--TKITELELSGNPLKNV 100

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  102 bits (257), Expect = 4e-25
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           ++L+ N ++ +P   F     L+ +DLS N I+ L  +  F  L  L  L L   ++ E 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITEL 95

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQ 547
           P  +   L  L++L L+ N +  +    F++L +L  L L DN +  +         ++Q
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 548 ALRLDGNPL 556
            + L  NP 
Sbjct: 156 TMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 88.6 bits (220), Expect = 3e-20
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L ++P++    +P  +  + L  N I  +P    FS    L+ + L   Q+ E   D   
Sbjct: 23  LTEIPTN----LPETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQ 77

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 553
            L+ L  L L  N +  +P+  F+ L SL  L L+ N I+ L  +      +L  L L  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 554 NPLRSIRRTILDRGTK 569
           N L++I +        
Sbjct: 138 NKLQTIAKGTFSPLRA 153

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSR 412
           L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      SL +L+L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           NKI + P ++   L SL  L L+ N +  +  D F+D+  L +L L  N + ++ +   F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TF 148

Query: 472 SSLPHLQELYL 482
           S L  +Q ++L
Sbjct: 149 SPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
           DC    L E+P++L      + L       N I  +P    +   K+ ++D+  N+++ L
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
           + +       L  L+   N +  +P+++   L  L  L L+ N+I  +         +L 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
              + +N L  +       L  + T+ L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
             + ++ L  N I+ +          L  +++S+N++SEL       L  L SL +  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-C 159
           I ++P  +     +L     ++N++  L     + L NL+     +N + ++ +      
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 160 SKMSKLDVEGN 170
             +  + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + + L    +S +  +       +  L L  N I ELP  L     SLQ L+L+ NKI  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
                   L +L+ L L +N L+ +    F  +  +Q + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 38/164 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            + L  N++  +PP        LR++ L+ N +  L      G     L+ L        
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRSL-------- 82

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELP 396
                                   L L G  ++ +P  ++E    +  L L+ N I  L 
Sbjct: 83  ----------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            +      +L  L L  NK++       + L ++  + L  NP 
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  105 bits (263), Expect = 6e-25
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCAS 404
           +  + + L   + EL      L  I    +   G++ K+++S+N + E+      S+   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 405 LQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-- 461
           L  + + + N +         +L +L  L + N  ++ +P           +LD+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 462 IASLPENPPFSSLPH-LQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 517
           I ++  N  F  L      L+L    ++E         Q   +     N+L+ +P   F 
Sbjct: 141 IHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 518 NLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGN 554
             +    LD+S   I +LP      L    L+A      
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENL--KKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 50/291 (17%), Positives = 96/291 (32%), Gaps = 54/291 (18%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN 285
           CS   F    + ++ +P++L        L     +L+   ++         L  +++S N
Sbjct: 9   CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQN 64

Query: 286 -SLSGLPPEI-GKMTTLRKL-LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
             L  +  ++   +  L ++ +   N L  +         P L                 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-LPNL----------------- 106

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRN-SIQELPPELS 400
                            + L +    +  +P        +   LD+  N +I  +     
Sbjct: 107 -----------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 401 S--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                    L L++N I++  ++             DNN L ++P+D F       ILD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS 508
           S   I SLP      +L  L+       L++ PT + +L  L    L+  S
Sbjct: 210 SRTRIHSLPSY-GLENLKKLRARSTY-NLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 24/266 (9%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G     L+ +   
Sbjct: 7   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIE-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEI-WEAGEITKLDLSRN 390
           + +N+       + D+ +   +L     E+ +E  N L  I  E       +  L +S  
Sbjct: 61  ISQNDVL--EVIEADVFSNLPKL----HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 391 SIQELPPEL-SSCASLQTLILSRN-KIKDWPDAILTSLSS-LSCLKLDNNPLRQVPSDGF 447
            I+ LP            L +  N  I          LS     L L+ N ++++ +  F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILDL 504
               + ++     N +  LP +  F        L + R ++   P+  L  L++LR    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDN 530
              +L+ +P   + L +L E  L+  
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
           ++         + ++P+++ +N                 +L      +  +++       
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---------------AIELRFVLTKLRVIQKGAFSGFG 54

Query: 69  LLTVLNVSHNK-LSELPA-AIGELHMLKSLDVS-FNSIMKIPDEI-GSATALVKFDCSSN 124
            L  + +S N  L  + A     L  L  + +   N+++ I  E   +   L     S+ 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 QLKELPSSLG------RCLNLSDFKASNNCITSLPEDLAD--CSKMSKLDVEGNKLTVLS 176
            +K LP            L++ D    N  I ++  +       +   L +  N +  + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD----NINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N+      +    ++  N L  +P  +    S  + LD+ + RI S+PS        L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSN 263
                  L  LP  L KL  L    L   
Sbjct: 231 RS--TYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 8e-12
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 51/280 (18%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
             + +T +P DL       +L     KL V+     + +  L ++  S+N +  +   + 
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IGSLSRLIRLDL-HQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
             +L +L  + +   N +L I         +L    + N  +  LP        +   LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 260 LHSN----QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-NPLRTLR 314
           +  N     ++            +L L+ N +  +       T L +L L+  N L  L 
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL- 193

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                                           D+   A+        L +    + ++PS
Sbjct: 194 ------------------------------PNDVFHGASGP----VILDISRTRIHSLPS 219

Query: 375 EIWEAGEITKLD-LSRNSIQELPPELSSCASLQTLILSRN 413
              E   + KL   S  ++++LP  L    +L    L+  
Sbjct: 220 YGLE--NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 35/155 (22%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           S     C     + + ++PSD  ++      L      +  + +   FS    L+++ + 
Sbjct: 10  SNRVFLC---QESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGA-FSGFGDLEKIEI- 61

Query: 484 MQLREAPTDILRLQQLRILDLSQN-SLQSIPEG-FKNLTSLTELDLSD-NNISALPPELG 540
                                SQN  L+ I    F NL  L E+ +   NN+  + PE  
Sbjct: 62  ---------------------SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 541 LLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
              P+LQ L +    ++ +         +     L
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQ--KVLL 133

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM 104
              L L  N I+++         L  +    +N L ELP            LD+S   I 
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 105 KIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +P     +   L     S+  LK+LP +L + + L +   +   
Sbjct: 216 SLPSYGLENLKKLRAR--STYNLKKLP-TLEKLVALMEASLTYPS 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (269), Expect = 9e-25
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + + I     I+++             N+    +++      EL+ +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I     + K   + N+L ++   L    NL       N I  L   L D  K+  L 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +E N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I    
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
                                 L  L+KL  L L  N + +    A    L VL+L +  
Sbjct: 171 ----------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208

Query: 287 LS 288
             
Sbjct: 209 CL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (264), Expect = 3e-24
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 13/206 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++   +   E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 24  IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 81

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              LT+L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 82  P--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 134

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            LYL        T + RL +L  L L  N +  I      LT L  L LS N+IS L   
Sbjct: 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRAL 193

Query: 539 LGLLEPSLQALRLDGNPLRSIRRTIL 564
            GL   +L  L L      +      
Sbjct: 194 AGL--KNLDVLELFSQECLNKPINHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 4e-22
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 22  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 78

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQ 498
            +      ++  L  L L  N I  L        L  L+ L L    + +    ++ L Q
Sbjct: 79  DIK--PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 132

Query: 499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558
           L  L L  N +  I      LT L  L L DN IS + P  GL    LQ L L  N +  
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNHISD 189

Query: 559 IR 560
           +R
Sbjct: 190 LR 191

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.5 bits (242), Expect = 2e-21
 Identities = 54/258 (20%), Positives = 103/258 (39%), Gaps = 27/258 (10%)

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           + + +    P++ +       P  A  + ++  L +   ++A T + +L ++        
Sbjct: 1   MGETITVSTPIKQIF------PDDAFAETIKDNLKKKSVTDAVT-QNELNSI-------- 45

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NKIKD  
Sbjct: 46  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 104 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 156

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            L L          +  L +L+ L LS+N +  +      L +L  L+L        P  
Sbjct: 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN 215

Query: 539 LGLLEPSLQALR-LDGNP 555
                     ++  DG+ 
Sbjct: 216 HQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 1e-18
 Identities = 50/285 (17%), Positives = 96/285 (33%), Gaps = 49/285 (17%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           +G     S  +K+   +         +L   S++       ++ ++ +++   + +++++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ 59

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                      ++YL                         +     +L L G  L+ I  
Sbjct: 60  G----------IQYL-----------------------PNV----TKLFLNGNKLTDI-K 81

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +     +  L L  N I++L   L     L++L L  N I D     L  L  L  L L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 138

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDI 493
            NN +  +       +  L  L L  N I+ +    P + L  LQ LYL          +
Sbjct: 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRAL 193

Query: 494 LRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPP 537
             L+ L +L+L      +       NL     +  +D ++     
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 5e-18
 Identities = 55/330 (16%), Positives = 104/330 (31%), Gaps = 71/330 (21%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           + E I     +  +     + +  I+ +L +  +    +                     
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT--------------------- 38

Query: 246 PAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                +L+ +  +  +++ +K    ++     ++ L L+ N L+ + P +  +  L  L 
Sbjct: 39  ---QNELNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIKP-LTNLKNLGWLF 93

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N ++ L S          LK L                        +L    K LSL
Sbjct: 94  LDENKIKDLSS----------LKDL-----------------------KKL----KSLSL 116

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
           E   +S I   +    ++  L L  N I ++   LS    L TL L  N+I D     L 
Sbjct: 117 EHNGISDING-LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP--LA 172

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM 484
            L+ L  L L  N +  +       +  L +L+L             S+L     +    
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPE 514
                P  I         ++  +  +   E
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +   L  L  L  L++  N++S++   +  L  L++L +S N I  +
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 107 PDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
              +     L   +  S +   +  +     +  +  K ++  + + PE ++D     K 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKP 248

Query: 166 DVEGNKLT 173
           +V+ +   
Sbjct: 249 NVKWHLPE 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (254), Expect = 5e-24
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I+++             N+    +++      EL+ +  +  + + I  +  
Sbjct: 6   ETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q 62

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
            I     + K   + N+L ++   L    NL       N +  L   L D  K+  L +E
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I   ++G
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L   Y+  N +S L   L  L  L  L+L S +     +      +    + N   S
Sbjct: 177 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 289 GLPPEI 294
            + PEI
Sbjct: 236 LVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 95.9 bits (239), Expect = 4e-22
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 13/201 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++       E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 27  IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 84

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L +L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 85  P--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 137

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            LYL        T + RL +L  L L  N +  I      LT L  L LS N+IS L   
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRAL 196

Query: 539 LGLLEPSLQALRLDGNPLRSI 559
            GL   +L  L L      + 
Sbjct: 197 AGL--KNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 25  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQL 499
            +      ++  L  L L  N +  L        L  L+ L L          ++ L QL
Sbjct: 82  DIK--PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
             L L  N +  I      LT L  L L DN IS + P  GL    LQ L L  N +  +
Sbjct: 137 ESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNHISDL 193

Query: 560 R 560
           R
Sbjct: 194 R 194

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 12/199 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NK+KD  
Sbjct: 49  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 107 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 159

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            L L          +  L +L+ L LS+N +  +      L +L  L+L        P  
Sbjct: 160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN 218

Query: 539 LGLLEPSLQALR-LDGNPL 556
                     ++  DG+ +
Sbjct: 219 HQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + ++I  +++I+ + + ++ LP +T L ++ NKL+++   +  L  L  L +  N +  +
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +     L       N + ++ + L     L      NN IT +   L+  +K+  L 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +E N+++ +    +A  T L  L  SKN ++ +   +  L  L  L+L     L+ P +
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 45/284 (15%)

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
           + +E I     +  +  +  + +  I+ +L +  +     + +   S+ +    N+ + +
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS 60

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +   +  L  +  L L+ N+L +    A    L  L L  N +  L   +  +  L+ L 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +  + + LV+      L  L                              + L L
Sbjct: 119 LEHNGISDI-NGLVH------LPQL------------------------------ESLYL 141

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
               ++ I + +    ++  L L  N I ++ P L+    LQ L LS+N I D     L 
Sbjct: 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LA 197

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468
            L +L  L+L +      P +   ++ +   +  +      PE 
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 47/261 (18%), Positives = 90/261 (34%), Gaps = 49/261 (18%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
               +L   S++       ++ ++ +++   + +++++           ++YL       
Sbjct: 26  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG----------IQYL------- 67

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                             +     +L L G  L+ I   +     +  L L  N +++L 
Sbjct: 68  ----------------PNV----TKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS 106

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             L     L++L L  N I D     L  L  L  L L NN +  +       +  L  L
Sbjct: 107 S-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP-E 514
            L  N I+ +    P + L  LQ LYL          +  L+ L +L+L      + P  
Sbjct: 162 SLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN 218

Query: 515 GFKNLTSLTELDLSDNNISAL 535
              NL     +  +D ++   
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  N ++ L   L++L  L  L++ HN +S++   +  L  L+SL +  N I  I
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI 149

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L       NQ+ ++   L     L +   S N I+ L   LA    +  L+
Sbjct: 150 TV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLE 206

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           +   +      N  ++  +   +  +   L   PE I       + ++  +       
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 55/301 (18%), Positives = 97/301 (32%), Gaps = 46/301 (15%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  I  S        +  +   +++       +L+ +  +  +++ +K       
Sbjct: 9   TVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQY 66

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ L L+ N L+ + P +  +  L  L L  N ++ L SSL +      LK L    
Sbjct: 67  LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKD------LKKL---- 114

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                     K LSLE   +S I   +    ++  L L  N I 
Sbjct: 115 --------------------------KSLSLEHNGISDING-LVHLPQLESLYLGNNKIT 147

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
           ++   LS    L TL L  N+I D     L  L+ L  L L  N +  +       +  L
Sbjct: 148 DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 202

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP 513
            +L+L             S+L     +         P  I         ++  +  +   
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

Query: 514 E 514
           E
Sbjct: 263 E 263

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 99.4 bits (248), Expect = 1e-23
 Identities = 65/184 (35%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           A  + L L    +    DA    L+ L+ L LD N L+ + +  F D+  L  L L+ N 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKN 518
           +ASLP    F  L  L +LYL   QL+  P+ +  RL +L+ L L+ N LQSIP G F  
Sbjct: 95  LASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 519 LTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 578
           LT+L  L LS N + ++P         LQ + L GN     R  IL         YL   
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL---------YLSQW 204

Query: 579 IPEN 582
           I EN
Sbjct: 205 IREN 208

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 99.0 bits (247), Expect = 1e-23
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L ++PS I    +  KLDL    +  L          L  L L  N+++     +   L+
Sbjct: 26  LDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-Q 485
            L  L L NN L  +P   F  +  L  L L  N + SLP    F  L  L+EL L   Q
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ 142

Query: 486 LREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           L+  P     +L  L+ L LS N LQS+P G F  L  L  + L  N
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-R 495
           L  VPS     IP   + LDL     +   +  F  L  L  L L   QL+     +   
Sbjct: 26  LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 496 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLD 552
           L +L  L L+ N L S+P G F +LT L +L L  N + +LP  +   L +  L+ LRL+
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK--LKELRLN 139

Query: 553 GNPLRSIRRTILDRGTKAVLKYL 575
            N L+SI     D+ T   L+ L
Sbjct: 140 TNQLQSIPAGAFDKLTN--LQTL 160

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           DC    L  +PS  G   +       +  + +L +      +K++ L+++ N+L  LS  
Sbjct: 20  DCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           +    T L  L  + N L  +P  +   L++L +L L  N++ S+PS +      L E  
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           +  N L ++PA    KL+ L TL L +NQL+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 38/185 (20%)

Query: 280 LDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           LDL +  L+ L       +T L  L L  N L+TL + + +  T                
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---------------- 83

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
                                  L L    L+++P  +++   ++ KL L  N ++ LP 
Sbjct: 84  -------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

Query: 398 EL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
            +      L+ L L+ N+++  P      L++L  L L  N L+ VP   F  +  LQ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 457 DLSYN 461
            L  N
Sbjct: 185 TLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 26/177 (14%)

Query: 45  VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
            D +KL L    +  L     R L  LT LN+ +N+L  L A +            F+ +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDDL 82

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
                     T L     ++NQL  LP  +   L  L       N + SLP  + D  +K
Sbjct: 83  ----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           + +L +  N+L  +        T L  L  S N L  +P      L +L  + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLR 314
           LDL S  L        +   +L+ L+L  N L  L   +   +T L  L L  N L +L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
             + +  T   L  L   L  N+                               L ++PS
Sbjct: 100 LGVFDHLTQ--LDKLY--LGGNQ-------------------------------LKSLPS 124

Query: 375 EIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++   ++ +L L+ N +Q +P        +LQTL LS N+++  P      L  L  +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 433 KLDNNP 438
            L  N 
Sbjct: 185 TLFGNQ 190

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 98.5 bits (246), Expect = 4e-23
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 16/207 (7%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
               P + +      K +L + S+ +   + +   S+  +I + + IK      +  L +
Sbjct: 10  KQIFPDDAFAET--IKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPN 64

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QL 486
           +  L L  N L  + +   K++  L  L L+ N + SLP    F  L +L+EL L   QL
Sbjct: 65  VRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVENQL 121

Query: 487 REAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE- 543
           +  P  +  +L  L  L+L+ N LQS+P+G F  LT+LTELDLS N + +LP   G+ + 
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDK 179

Query: 544 -PSLQALRLDGNPLRSIRRTILDRGTK 569
              L+ LRL  N L+S+   + DR T 
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTS 206

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           +     ++ ++   I     +  L L  N + ++   L    +L  LIL+ N+++  P+ 
Sbjct: 46  IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNG 103

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
           +   L++L  L L  N L+ +P   F  +  L  L+L++N + SLP+   F  L +L EL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTEL 162

Query: 481 YLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            L   QL+  P  +  +L QL+ L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 19/196 (9%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            +S    Q  P +    A      L +  + D        L+S+  +  +N+ ++ V   
Sbjct: 4   TVSTPIKQIFPDDAF--AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ-- 57

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRIL 502
           G + +P ++ L L  N +  +        L +L  L L   QL+  P  +  +L  L+ L
Sbjct: 58  GIQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 503 DLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPLRSI 559
            L +N LQS+P+G F  LT+LT L+L+ N + +LP   G+ +   +L  L L  N L+S+
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSL 172

Query: 560 RRTILDRGTKAVLKYL 575
              + D+ T+  LK L
Sbjct: 173 PEGVFDKLTQ--LKDL 186

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
           + +L +  +    +      S+ +    N+ + ++   +  L  +  L L  N+L +   
Sbjct: 23  KANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA 80

Query: 271 EACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 L+ L L+ N L  LP  +  K+T L++L+L  N L++L   + +  T       
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------- 133

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L+L    L ++P  +++    +T+LDLS
Sbjct: 134 ----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 389 RNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            N +Q LP  +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
             S+   +  P          NL         +T         + + ++    + +  + 
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLK-----KKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 57

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSL 232
              I     +  L    N L      I     L+ L  L L  N++ S+P+ +     +L
Sbjct: 58  G--IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 233 AEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDLSNNSLSG 289
            E  +  N L +LP  +  KL+ L  L+L  NQL+     V      L+ LDLS N L  
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 290 LPPEI-GKMTTLRKLLLTGNPLR 311
           LP  +  K+T L+ L L  N L+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K  L   ++         L  +  +  +++ +  +   I  L  ++ L +  N +  
Sbjct: 20  ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD 77

Query: 106 IP--DEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
           I    E+ + T L     + NQL+ LP+ +   L NL +     N + SLP+ + D  + 
Sbjct: 78  ISALKELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 220
           ++ L++  N+L  L   +    T LTEL  S N L  +PE +   L++L  L L+QN++ 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 221 SIP 223
           S+P
Sbjct: 195 SVP 197

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 96.3 bits (240), Expect = 6e-23
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE 488
           L+L+NN    + + G FK +P L+ ++ S N I  + E   F     + E+ L   +L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNRLEN 95

Query: 489 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSL 546
               +   L+ L+ L L  N +  +    F  L+S+  L L DN I+ + P       SL
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 547 QALRLDGNPL 556
             L L  NP 
Sbjct: 156 STLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 29/166 (17%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSL 426
           L+ IP  I +     +L L+ N    L           L+ +  S NKI D  +      
Sbjct: 23  LNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQ 485
           S ++ + L +N L  V    FK +  L+ L L  N I  +  +  F  L  ++ L L   
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSL--- 136

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
                                N + ++  G F  L SL+ L+L  N
Sbjct: 137 -------------------YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 91.3 bits (227), Expect = 4e-21
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L ++P      IP     L L+ N    L     F  LP L+++     ++ +       
Sbjct: 23  LNKIPEH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRL 551
               +  + L+ N L+++    FK L SL  L L  N I+ +  +   GL   S++ L L
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL--SSVRLLSL 136

Query: 552 DGNPLRSIRRTILDR 566
             N + ++     D 
Sbjct: 137 YDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 6e-17
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLI 409
             +   + EL L     + + +        ++ K++ S N I ++        + +  ++
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN 468
           L+ N++++    +   L SL  L L +N +  V +D F  +  +++L L  N I ++   
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 469 PPFSSLPHLQELYL 482
             F +L  L  L L
Sbjct: 148 -AFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+ +L ++P  +                   P+        ++L +  N+ TVL    
Sbjct: 17  DCSNQKLNKIPEHI-------------------PQYT------AELRLNNNEFTVLEATG 51

Query: 180 I-ASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           I      L ++  S N +  + E      S +  + L  NR+ ++   +  G  SL    
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           + +N ++ +  +    LS +  L L+ NQ+ 
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           ++++     ++ I    +E A  + ++ L+ N ++ +  ++     SL+TL+L  N+I  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +     LSS+  L L +N +  V    F  +  L  L+L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 279 VLDLSNNSLSGLPPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L L+NN  + L       K+  LRK+  + N +  +      G                
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------- 79

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
                          A+ +     E+ L    L  +  ++++    +  L L  N I  +
Sbjct: 80  ---------------ASGV----NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 396 PPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
             +     +S++ L L  N+I         +L SLS L L  NP 
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 500 RILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNP 555
             L L+ N    +     FK L  L +++ S+N I+ +    G  E    +  + L  N 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGASGVNEILLTSNR 92

Query: 556 LRSIRRTILDRGTKAVLKYLK 576
           L +++  +        LK L 
Sbjct: 93  LENVQHKMFKGLES--LKTLM 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
               +L L +N    L+     + LP L  +N S+NK++++   A      +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
            +  +  ++     +L      SN++  + +     L ++      +N IT++     D 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 160 -SKMSKLDVEGN 170
              +S L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 87.4 bits (217), Expect = 9e-20
 Identities = 50/131 (38%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            + Q L L  N+I      +  SL +L  L L +N L  +P   F  +  L +LDL  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNL 519
           +  LP    F  L HL+EL++   +L E P  I RL  L  L L QN L+SIP G F  L
Sbjct: 100 LTVLPSA-VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 520 TSLTELDLSDN 530
           +SLT   L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L L +N + ++    F  +  L+ L L  N + +LP    F SL  L  L L   QL   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQLTVL 103

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 548
           P+ +  RL  L+ L +  N L  +P G + LT LT L L  N + ++P        SL  
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 549 LRLDGNP 555
             L GNP
Sbjct: 164 AYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            L +  N++T L   +  S   L EL    N L  +P  +  SL++L  LDL  N++  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           PS++      L E +M  N L+ LP  + +L+ L  L L  NQLK
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNN 178
           DC S +   +P+  G   N       +N IT L   + D    + +L +  N+L  L   
Sbjct: 25  DCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
           +  S T LT L    N L  +P  +   L  L  L +  N++  +P  I     L    +
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 238 GNNALSALPAE-LGKLSKLGTLDLHSNQ 264
             N L ++P     +LS L    L  N 
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L LH N+I  +   +     +L E Y+G+N L ALP  +   L++L  LDL +NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                 L          L  L +  N L+ LP  I ++T L  L L  N L+
Sbjct: 103 ------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
            + Q L L  N I KL+  +  +L  L  L +  N+L  LP  +   L  L  LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           +  +P  +      L +     N+L ELP  + R  +L+      N + S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 45/166 (27%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRS----SLVNGPTPALLKYLRSRL 333
           +L L +N ++ L P +   +  L++L L  N L  L      SL                
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------------- 89

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSI 392
                                       L L    L+ +PS +++    + +L +  N +
Sbjct: 90  -------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            ELP  +     L  L L +N++K  P      LSSL+   L  NP
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            ++D        +P  I +           NQ+ +L   +   L NL +    +N + +L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
           P  + D  ++++ LD+  N+LTVL + +      L EL    N L  +P  I  L+ L  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 212 LDLHQNRILSIP 223
           L L QN++ SIP
Sbjct: 140 LALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 362 LSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L    L A+P  ++    ++T LDL  N +  LP  +      L+ L +  NK+ + P
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             I   L+ L+ L LD N L+ +P   F  +  L    L  N
Sbjct: 129 RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.4 bits (219), Expect = 2e-19
 Identities = 59/266 (22%), Positives = 99/266 (37%), Gaps = 25/266 (9%)

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMN 368
           L+ + +    G    ++K L   L       A      L      L ++  +EL+LE + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS--LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 369 LSA---IPSEIWEAGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPD 420
           ++     P       ++  L+L   S       L+         L+ L +++    ++  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 421 AILTSLSSLSCLKLDNNPLRQ----VPSDGFKDIPMLQILDLSYN-IASLPENPP--FSS 473
             +    +LS L L +NP       + +      P LQ+L L    + +         ++
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 474 LPHLQELYL-RMQLREAPTDI--LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530
              LQ L L    LR+A          QL  L+LS   L+ +P+G      L+ LDLS N
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYN 284

Query: 531 NISALPPELGLLEPSLQALRLDGNPL 556
            +   P    L  P +  L L GNP 
Sbjct: 285 RLDRNPSPDEL--PQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 53/285 (18%), Positives = 85/285 (29%), Gaps = 59/285 (20%)

Query: 43  EAVDLQKLILAHNNI--EKLKEDLRNLPL-----LTVLNVSHNKLSELPAAIGELHMLKS 95
           +++ L++L +    I    L   LR L +     LT+ N+     +  P        L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L++   S       +               LK L               +     +   +
Sbjct: 126 LNLRNVSWATRDAWLAEL-----QQWLKPGLKVL-------------SIAQAHSLNFSCE 167

Query: 156 L-ADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSL---- 206
                  +S LD+  N        + A     +  L  L      +        +L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
            +L  LDL  N +     + S                         S+L +L+L    LK
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS---------------------CDWPSQLNSLNLSFTGLK 266

Query: 267 EYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           +  V       LSVLDLS N L   P    ++  +  L L GNP 
Sbjct: 267 Q--VPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 52/321 (16%), Positives = 79/321 (24%), Gaps = 60/321 (18%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           F+C      EL    GR L     +           D+     + +L V   ++      
Sbjct: 28  FNCLGAADVELYGG-GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 179 LIA---SWTMLTELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCC-- 230
                   + L EL      + G    P    +   L  L+L      +  + ++     
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 231 ---SLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL------KEYCVEACQLRLSVL 280
               L    +          E       L TLDL  N                   L VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 281 DLSNNSLSGLPPEIGKMTTLRKLL----LTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L N  +         +   R  L    L+ N LR    +        L           
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL----------- 255

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                    L+L    L  +P  +     ++ LDLS N +   P
Sbjct: 256 -----------------------NSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP 290

Query: 397 PELSSCASLQTLILSRNKIKD 417
                   +  L L  N   D
Sbjct: 291 SPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            LNL N S       + +           W    L+ L +A  +      E +R  P L+
Sbjct: 125 ILNLRNVSWATRDAWLAELQQ--------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 72  VLNVSHNKLSELPAAI-----GELHMLKSLDVSFNSIMKIPDEIGSATA----LVKFDCS 122
            L++S N        I      +   L+ L +    +        +  A    L   D S
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 123 SNQLKELPSSLG--RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
            N L++   +        L+    S   +  +P+ L   +K+S LD+  N+L        
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP--SP 292

Query: 181 ASWTMLTELIASKNLL 196
                +  L    N  
Sbjct: 293 DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 47  LQKLILAHNNIEKL----KEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSF 100
           LQ L L +  +E               L  L++SHN L +   A        L SL++SF
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 101 NSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150
             + ++P  + +   L   D S N+L   PS       + +     N   
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 40/228 (17%), Positives = 70/228 (30%), Gaps = 22/228 (9%)

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRNSIQEL--PPELSSCASLQTLIL 410
             S    + S     L A   E++  G  +  L    ++  +L    ++    SL+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 411 SRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
              +I     +    +  +S L  L L+N  +         +     +  L+    S   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 468 NPPFSS------LPHLQELYL-RMQLREAPTDILR-LQQLRILDLSQNSLQSIPE----- 514
              + +       P L+ L + +        + +R    L  LDLS N            
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 515 GFKNLTSLTELDLSDNNISALPPELGLLE---PSLQALRLDGNPLRSI 559
                 +L  L L +  +         L      LQ L L  N LR  
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 85.5 bits (212), Expect = 8e-19
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 13/185 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
              K +L + S+ +L       + +Q      + I+      +   ++L  L L +N + 
Sbjct: 20  NAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS 76

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQL 499
            +     KD+  L+ L ++ N + +L           L  L+L          ++ L+ L
Sbjct: 77  DL--SPLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRDTDSLIHLKNL 130

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
            IL +  N L+SI      L+ L  LDL  N I+       L    +  + L G    + 
Sbjct: 131 EILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQKCVNE 187

Query: 560 RRTIL 564
                
Sbjct: 188 PVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 15/175 (8%)

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
                I ++ P     A+     L +  + D        LS +     DN+ ++ +   G
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AG 58

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDL 504
            +    L+ L LS+N I+ L    P   L  L+EL +   +L+    + +    L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFL 113

Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
             N L+   +   +L +L  L + +N + ++     L    L+ L L GN + + 
Sbjct: 114 DNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFL--SKLEVLDLHGNEITNT 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K  L   ++  L    + L  +   N  ++ +  L   +     LK L +S N I  +
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL 78

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L +   + N+LK L  +      LS     NN +    + L     +  L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +  NKL  +    +   + L  L    N +      +  L ++  +DL   + ++ P
Sbjct: 135 IRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I ++      L      N+    +++L +   EL  +++ +   ++I  +  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-- 56

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
                                 + +    NL +   S+N I+ L   L D +K+ +L V 
Sbjct: 57  ----------------------AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVN 93

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L  L+         L+ L    N L    +++  L  L  L +  N++ SI      
Sbjct: 94  RNRLKNLNGI---PSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
                               LG LSKL  LDLH N++          +++ +DL+     
Sbjct: 146 --------------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 289 GLPPE 293
             P +
Sbjct: 186 NEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +Q     ++NI+ L   ++    L  L++SHN++S+L   + +L  L+ L V+ N +  +
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL 100

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +  L +    +N+L++   SL    NL      NN + S+   L   SK+  LD
Sbjct: 101 --NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLD 156

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
           + GN++T      +     +  +  +       P      L     +     R +S P  
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYY 213

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLS 253
           IS   S  +  +       LP    ++S
Sbjct: 214 ISNGGSYVDGCVLWE----LPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 41/266 (15%), Positives = 79/266 (29%), Gaps = 45/266 (16%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
              L+     +L    + +   +     +   +  N+++  L   +   T L++L L+ N
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHN 73

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            +  L S L +      L  L                              +ELS+    
Sbjct: 74  QISDL-SPLKD------LTKL------------------------------EELSVNRNR 96

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L  +      +  +++L L  N +++    L    +L+ L +  NK+K      L  LS 
Sbjct: 97  LKNLNGI--PSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSK 151

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLRE 488
           L  L L  N +      G   +  +  +DL+              L     +        
Sbjct: 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

Query: 489 APTDILRLQQLRILDLSQNSLQSIPE 514
           +P  I          +         E
Sbjct: 210 SPYYISNGGSYVDGCVLWELPVYTDE 235

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 48/249 (19%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  +     G  +  +  +G  +++ L +   +LS +   +  ++ ++       
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              L  L LS+N +S L P +  +T L +L +  N L     +L   P+  L        
Sbjct: 62  FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL----KNLNGIPSACL-------- 108

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                       L L+   L      +     +  L +  N ++
Sbjct: 109 --------------------------SRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK 141

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
            +   L   + L+ L L  N+I +     LT L  ++ + L        P     +   L
Sbjct: 142 SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPE---L 195

Query: 454 QILDLSYNI 462
            I +   + 
Sbjct: 196 YITNTVKDP 204

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 88.7 bits (219), Expect = 1e-18
 Identities = 44/249 (17%), Positives = 67/249 (26%), Gaps = 15/249 (6%)

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
                K   +  +       +  +   L + + S  +   L S L  C  L +       
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL--EPEN 381

Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLS 207
              L   +     +  L  E   L   S    +               L          +
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  L L    +  +   +     +    + +N L ALP  L  L  L  L    N L+ 
Sbjct: 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500

Query: 268 YCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               A   RL  L L NN L        +     L  L L GN L              +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGI 551

Query: 326 LKYLRSRLP 334
            + L   LP
Sbjct: 552 QERLAEMLP 560

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 87.1 bits (215), Expect = 3e-18
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 28/226 (12%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ----------- 406
           + KE  L          +     ++ + +LS      L  EL SC  LQ           
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 407 TLILSRNKIKD--WPDAILTSLSSLSCL--------KLDNNPLRQVPSDGFKDIPMLQIL 456
           T+IL    +    +    L   S+L  +            +      S    +   +++L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
            L++   ++  +     L  +  L L   +LR  P  +  L+ L +L  S N+L+++  G
Sbjct: 447 HLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503

Query: 516 FKNLTSLTELDLSDNNISALP--PELGLLEPSLQALRLDGNPLRSI 559
             NL  L EL L +N +        L    P L  L L GN L   
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
            E  D++ L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           ++  +   + +   L +    +N+L++  +   L  C  L       N +     
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 6e-13
 Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 70/298 (23%)

Query: 258 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           + L           A   +L   +LS    + L  E+     L++L              
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL----- 386

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-ATRLSVTSKELSLEGMNLSAIPSEI 376
                  ++  +R+  P   + E       L  +   R +      S   +         
Sbjct: 387 ------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE---NSVLK 437

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            E  ++  L L+   +  L   L     +  L LS N+++  P A L +L  L  L+  +
Sbjct: 438 MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRL 496
           N L                                 ++  +                  L
Sbjct: 496 NAL--------------------------------ENVDGVA----------------NL 507

Query: 497 QQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELGLLE---PSLQAL 549
            +L+ L L  N LQ         +   L  L+L  N++         L    PS+ ++
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 24/179 (13%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +T + L+  ++ +L   +    +++ L ++     ++    ++ LS+L  L++    +  
Sbjct: 46  LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTS 102

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRI 501
                   +  L +LD+S++          ++LP +  + L                   
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL------------------- 143

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 560
              S N   +     K L  L  L++  + +           P L  L      +   +
Sbjct: 144 ---SYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 36/218 (16%)

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
           VN P      YL   L ++  +    T+  + ++          ++L  +N++ + + I 
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANI--TEAQMNSL--------TYITLANINVTDL-TGIE 63

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            A  I  L ++        P +S  ++L+ L +    +       L+ L+SL+ L + ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQ 497
                       +P +  +DLSY       N   + +  L+                 L 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSY-------NGAITDIMPLKT----------------LP 159

Query: 498 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 535
           +L+ L++  + +     G ++   L +L      I   
Sbjct: 160 ELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 55  NNIEKLKEDLRNLP---LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
               K  +D  N+P       LN    + S       +++ L  + ++  ++  +   I 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIE 63

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170
            A  +     ++       + +    NL   +     +TS    +L+  + ++ LD+  +
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
                    I +   +  +  S N        + +L  L  L++  + +      I    
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP 181

Query: 231 SLAEFYMGNNALSAL 245
            L + Y  +  +   
Sbjct: 182 KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LL 196
           +L+    +N  +T L   +     +  L +     T  +   I+  + L  L      + 
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 NGMPETIGSLSRLIRLDLHQNRI-LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
           +     +  L+ L  LD+  +    SI + I+    +    +  N        L  L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
            +L++  + + +Y       +L+ L   + ++ G 
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           LT +  +   +  +   I     +  L ++     +  + ISG  +L    +    +++ 
Sbjct: 46  LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
               L  L+ L  LD+  +   +  +       +++ +DLS N        +  +  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 303 LLLTGNPLRTLR 314
           L +  + +   R
Sbjct: 164 LNIQFDGVHDYR 175

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 5/128 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L L+ N L+ +P+  F ++  L  L L  N + SLP    F+ L  L  L L   QL+  
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-FNKLTSLTYLNLSTNQLQSL 91

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQ 547
           P  +  +L QL+ L L+ N LQS+P+G F  LT L +L L  N + ++P  +     SLQ
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151

Query: 548 ALRLDGNP 555
            + L  NP
Sbjct: 152 YIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 49/177 (27%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
             +  L LE  +L ++P+ +++    +T+L L  N +Q LP  + +   SL  L LS N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474
           ++  P+ +   L+ L  L L+ N L+ +P   F                           
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-------------------------- 121

Query: 475 PHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
                               +L QL+ L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 122 --------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            LD+E N L  L N +    T LT+L    N L  +P  +   L+ L  L+L  N++ S+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           P+ +      L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            LDL  N + S+P+ +     SL + Y+G N L +LP  +  KL+ L  L+L +NQL+  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLR 311
                 L         +L  L L+ N L  LP  +  K+T L+ L L  N L+
Sbjct: 91  ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           T +       + +P  I        LD+  NS+  +P+ +    T+L +     N+L+ L
Sbjct: 10  TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           P+ +   L +L+    S N + SLP  + D  +++ +L +  N+L  L + +    T L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           +L   +N L  +P+ +   L+ L  + LH N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            +++        +P  I + T     D  +N LK LP+ +   L +L+      N + SL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           P  + +  + ++ L++  N+L  L N +    T L EL  + N L  +P+ +   L++L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 211 RLDLHQNRILSIP 223
            L L+QN++ S+P
Sbjct: 128 DLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 38/163 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            LDL  NSL  LP  +  ++T+L +L L GN L++L + + N  T               
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT--------------- 76

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELP 396
                               +   L+L    L ++P+ +++   ++ +L L+ N +Q LP
Sbjct: 77  --------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
                L L  N+++ L       L  LT L +  NKL  LP  +  +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPE 154
           +  +P+ +    T L +   ++NQL+ LP  +  +   L D +   N + S+P+
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYC 269
           + +     S+P+ I          +  N+L +LP     +L+ L  L L  N+L+     
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           V      L+ L+LS N L  LP  +  K+T L++L L  N L++L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 79.3 bits (196), Expect = 3e-17
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE 488
           L L++N L ++ SDG F  +P L  L+L  N +  +  N  F    H+QEL L   +++E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKE 92

Query: 489 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
               +   L QL+ L+L  N +  +  G F++L SLT L+L+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L+++P D    IP+    L L+ N +  +  +  F  LPHL +L L+  QL     +   
Sbjct: 20  LKEIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRL 551
               ++ L L +N ++ I    F  L  L  L+L DN IS + P  G  E   SL +L L
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNL 133

Query: 552 DGNPL 556
             NP 
Sbjct: 134 ASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 357 VTSKELSLEGMNLSAIPSEIW--EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 413
           + + EL L    L  I S+        + KL+L RN +  + P      + +Q L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           KIK+  + +   L  L  L L +N +  V    F+ +  L  L+L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 500 RILDLSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNP 555
             L L+ N L  I     F  L  L +L+L  N ++ + P    G     +Q L+L  N 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA--SHIQELQLGENK 89

Query: 556 LRSIRRTILDRGTKAVLKYL 575
           ++ I   +     +  LK L
Sbjct: 90  IKEISNKMFLGLHQ--LKTL 107

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 187 TELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALS 243
           TEL+ + N L  +      G L  L++L+L +N++  I  +   G   + E  +G N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 244 ALPAEL-GKLSKLGTLDLHSNQLK 266
            +  ++   L +L TL+L+ NQ+ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
            L L+ N +  I S         L +  +  N L+ +        S +  L L  N++KE
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 268 YCVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                  +         +L  L+L +N +S + P     + +L  L L  NP 
Sbjct: 93  -------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +L L+   L+ I    +E A  I +L L  N I+E+  ++      L+TL L  N+I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 418 WPDAILTSLSSLSCLKLDNNPL 439
                   L+SL+ L L +NP 
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D     N +  +  D        + KL+++ N+LT 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           +  N     + + EL   +N +  +   +   L +L  L+L+ N+I  + 
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
           +   +L+L  N + ++  D     LP L  L +  N+L+ +   A      ++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            I +I +++      L   +   NQ+  + 
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L LD N    VP +   +   L ++DLS N I++L     FS++  L  L L   +LR  
Sbjct: 36  LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCI 93

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           P      L+ LR+L L  N +  +PEG F +L++L+ L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 463 ASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLT 520
             LP+  P        ELYL   Q    P ++   + L ++DLS N + ++    F N+T
Sbjct: 23  KVLPKGIPRDV----TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 521 SLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILDR 566
            L  L LS N +  +PP    GL   SL+ L L GN +  +     + 
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGL--KSLRLLSLHGNDISVVPEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 19/127 (14%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L+ +P      IP  +  L L  N    +P+    S+  HL  + L   ++         
Sbjct: 22  LKVLPKG----IPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP----ELGLLEPSLQAL 549
            + QL  L LS N L+ IP   F  L SL  L L  N+IS +P     +L     +L  L
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS----ALSHL 131

Query: 550 RLDGNPL 556
            +  NPL
Sbjct: 132 AIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKI 415
               EL L+G   + +P E+     +T +DLS N I  L  +  S+   L TLILS N++
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +  P      L SL  L L  N +  VP   F D+  L  L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
            CS+  LK LP  +      L L       N  T +P++L++   ++ +D+  N+++ LS
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N   ++ T L  LI S N L  +P      L  L  L LH N I  +P    +   +L+ 
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 235 FYMGNN 240
             +G N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLR 557
             L L  N    +P+   N   LT +DLS+N IS L  +    + +  L  L L  N LR
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ--LLTLILSYNRLR 91

Query: 558 SIRRTILDRGTKAVLKYL 575
            I     D      L+ L
Sbjct: 92  CIPPRTFDGLKS--LRLL 107

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYC 269
            L L  N+   +P  +S    L    + NN +S L  +    +++L TL L  N+L+   
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 270 VEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                    L +L L  N +S +P      ++ L  L +  NPL
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLS 278
            +P  I     + E Y+  N  + +P EL     L  +DL +N++        +   +L 
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
            L LS N L  +PP     + +LR L L GN +  +
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           ++  L LS N ++ +PP       SL+ L L  N I   P+     LS+LS L +  NPL
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
            D+ +L L  N    + ++L N   LT++++S+N++S L       +  L +L +S+N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 104 MKIPDEI-GSATALVKFDCSSNQLKELP 130
             IP        +L       N +  +P
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.2 bits (184), Expect = 8e-15
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 463 ASLPENPP-FSSLPHLQELYLR--MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 517
               ++        +L ELY+     L+      LR L +LR L + ++ L+ +    F 
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 518 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
               L+ L+LS N + +L  +  +   SLQ L L GNPL 
Sbjct: 78  FTPRLSRLNLSFNALESLSWKT-VQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 4e-12
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 482 LRMQLREAPTDILRLQQLRILDLS-QNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
            R    ++   +   + L  L +  Q  LQ +     + L  L  L +  + +  + P+ 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 540 GLLEPSLQALRLDGNPLRSIRRTILD 565
               P L  L L  N L S+    + 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           + L  +R+   +    L    +L  L +   + ++      L  L  L  L +  + LR 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           V  D F   P L  L+LS+N + SL        L  LQEL L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWK-TVQGLS-LQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 8e-11
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAE-LGKLSKLGTLDLHSNQLKEYC 269
           L   ++  L     + G  +L E Y+     L  L    L  L +L  L +  + L+   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--F 70

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           V         RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI 455
           P+         L  +R+   D     L    +L+ L ++N   L+ +     + +  L+ 
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 514
           L +  + +  +  +  F   P L  L                      +LS N+L+S+  
Sbjct: 61  LTIVKSGLRFVAPDA-FHFTPRLSRL----------------------NLSFNALESLSW 97

Query: 515 GFKNLTSLTELDLSDN 530
                 SL EL LS N
Sbjct: 98  KTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 46  DLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           +L +L + +   ++ L   DLR L  L  L +  + L  +   A      L  L++SFN+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 103 IMKIPDEIGSATALVKFDCSSNQL 126
           +  +  +     +L +   S N L
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 360 KELSLEGMN-LSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
            EL +E    L  +    +   GE+  L + ++ ++ + P+       L  L LS N ++
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 417 DWPDAILTSLSSLSCLKLDNNPLR 440
                 +  L SL  L L  NPL 
Sbjct: 94  SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNN-ISALPPE--LGLLEPSLQALRLDGNPLRS 558
           L  +++             +LTEL + +   +  L      GL    L+ L +  + LR 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL--GELRNLTIVKSGLRF 70

Query: 559 I 559
           +
Sbjct: 71  V 71

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L                  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------------- 48

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKL 252
                    +  L  L  L + ++ +  +          L+   +  NAL +L  +  + 
Sbjct: 49  ------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             L  L L  N L   C  +C LR            
Sbjct: 103 LSLQELVLSGNPLH--C--SCALRWLQRWEEEGLGG 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQ 510
             L+L  N + SLP    F  L  L +L L   Q++  P  +  +L +L IL L +N LQ
Sbjct: 31  TRLELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 511 SIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
           S+P G F  LT L EL L  N + ++P  +     SLQ + L  NP
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 50/164 (30%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLS 427
           L+++P+ I      T+L+L  N +Q LP  +      L  L LS+N+I+  PD +   L+
Sbjct: 19  LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR 487
            L+ L L  N L+ +P+  F                                        
Sbjct: 77  KLTILYLHENKLQSLPNGVFD--------------------------------------- 97

Query: 488 EAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
                  +L QL+ L L  N L+S+P+G F  LTSL ++ L  N
Sbjct: 98  -------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
            ++  L LE   L ++P  +++   ++TKL LS+N IQ LP  +      L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++  P+ +   L+ L  L LD N L+ VP   F  +  LQ + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
           RL+L  N++ S+P  +      L +  +  N + +LP  +  KL+KL  L LH N+L+  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
                 L         +L  L L  N L  +P  I  ++T+L+K+ L  NP
Sbjct: 91  ------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +LSL    + ++P  +++   ++T L L  N +Q LP  +      L+ L L  N++K 
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114

Query: 418 WPDAILTSLSSLSCLKLDNNP 438
            PD I   L+SL  + L  NP
Sbjct: 115 VPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 23/104 (22%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
           +L++E NKL  L + +    T LT+L  S+N +  +P+ +   L++L  L LH+N++ S+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           P+ +                        KL++L  L L +NQLK
Sbjct: 92  PNGV----------------------FDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 120 DCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVL 175
            C+S  L  +P+   S    L L      +N + SLP  + D  ++++KL +  N++  L
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
            + +    T LT L   +N L  +P  +   L++L  L L  N++ S+P
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           +L      IEK+   L  L     L +S N + ++ +++  +  L+ L +  N I KI +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLD 166
               A  L +   S NQ+  L S + + +NL     SNN IT+  E   LA   K+  L 
Sbjct: 88  LDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 167 VEGNKLT 173
           + GN L 
Sbjct: 147 LAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 53/178 (29%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  +L      I+++   LS+  + + L LS N I          +SSLS ++       
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--------EKISSLSGME------- 70

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500
                       L+IL L  N+           + +L  +                  L 
Sbjct: 71  -----------NLRILSLGRNL--------IKKIENLDAV---------------ADTLE 96

Query: 501 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPL 556
            L +S N + S+  G + L +L  L +S+N I+    E+  L     L+ L L GNPL
Sbjct: 97  ELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 162 MSKLDVEGNKLTVLS--NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
           M+K     + + +     +++A+     EL      +  M  T+ +L     L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279
             I SS+SG  +L    +G N +  +         L  L +  NQ+         + L V
Sbjct: 61  EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L +SNN ++      ++  +  L  LLL GNPL        N  T      +  RLP
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 23/181 (12%)

Query: 342 STTKEDLI------TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
           +TT +D I                 EL      +  + + +        L LS N+I+++
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              LS   +L+ L L RN IK   + +     +L  L +  N +  +   G + +  L++
Sbjct: 64  SS-LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV 119

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYL-------RMQLREAPTD-----ILRLQQLRIL 502
           L +S N I +  E    ++L  L++L L         +   A ++     + RL  L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 503 D 503
           D
Sbjct: 180 D 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
             E+ K  +        L+     + ++ A +  L   K L +S N+I KI   +     
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMEN 71

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L       N +K++ +       L +   S N I SL   +     +  L         +
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY--------M 122

Query: 176 SNNLIASWTMLTELIASKNL 195
           SNN I +W  + +L A   L
Sbjct: 123 SNNKITNWGEIDKLAALDKL 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 514
           L      I  +      S+L   + L L     E  + +  ++ LRIL L +N ++ I  
Sbjct: 30  LHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN 87

Query: 515 GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 560
                 +L EL +S N I++L     L   +L+ L +  N + +  
Sbjct: 88  LDAVADTLEELWISYNQIASLSGIEKL--VNLRVLYMSNNKITNWG 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 3e-14
 Identities = 96/619 (15%), Positives = 180/619 (29%), Gaps = 176/619 (28%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           IL+    +   ++          +     + ++P +I     L   ++  + I+   D +
Sbjct: 21  ILSVF-EDAFVDNF---------DCKD--VQDMPKSI-----LSKEEI--DHIIMSKDAV 61

Query: 111 GSATALVKFDC----SSNQLKELPSSLGRCLN------LSDFKASNNCITSLPEDL---- 156
                L  F          +++    +   L       +S  K       S+   +    
Sbjct: 62  SGTLRL--FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQ 115

Query: 157 -----ADCSKMSKLDVE-GNKLTVLSNNLIASWTMLTELIASKNL-LNGMP--------- 200
                 D    +K +V        L          L EL  +KN+ ++G+          
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 201 ETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE--FYMGNNALSALPAELGKLSKLG 256
           +   S     ++D    +I  L++       C+  E    M    L  +       S   
Sbjct: 169 DVCLSYKVQCKMD---FKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 257 -TLDLHSNQLKEYCVEACQLR-----LSVLD-LSNNSLSGLPPEIGKMTTLR-KLLLTGN 308
             + L  + ++       + +     L VL  + N        +      L  K+LLT  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSCKILLT-- 271

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG-- 366
              T    + +     L     + +  +  S   T  E    +   L    ++L  E   
Sbjct: 272 ---TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 367 ---MNLSAIPSEI---------WEAGEITKLD-LSRNSIQELPPEL-----SSCA----- 403
                LS I   I         W+     KL  +  +S+  L P          +     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 404 ---SLQTL-ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ----- 454
                  L ++  + IK     ++  L   S ++                IP +      
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------ISIPSIYLELKV 437

Query: 455 -----------ILDLSYNIASLPENPPFSSLP-----------HLQ--ELYLRMQL-REA 489
                      I+D  YNI    ++                  HL+  E   RM L R  
Sbjct: 438 KLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 490 PTDILR-LQQ-LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQ 547
             D  R L+Q +R    + N+  SI      L +L +L      I    P+   L  ++ 
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSI------LNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 548 --ALRLDGNPLRSIRRTIL 564
               +++ N + S    +L
Sbjct: 550 DFLPKIEENLICSKYTDLL 568

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 85/491 (17%), Positives = 150/491 (30%), Gaps = 128/491 (26%)

Query: 116 LVKFDCSSNQL-----KELPSSLGRC--LNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
           +   D    +L      EL   L +C  + L D   +      +   L     +++L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L             + + + + +             ++ +L L    +     + +G
Sbjct: 65  SNELGD------VGVHCVLQGLQTPS------------CKIQKLSLQNCCL-----TGAG 101

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLD 281
           C  L+               L  L  L  L L  N L +  ++         Q RL  L 
Sbjct: 102 CGVLSS-------------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 282 LSNNSLS-----GLPPEIGKMTTLRKLLLTGNPL-----RTLRSSLVNGPTPALLKYLRS 331
           L   SLS      L   +      ++L ++ N +     R L   L +  +P  L+ L+ 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALK- 205

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGE-----ITKL 385
            L     +  +      +        + +EL+L    L  +  +E+          +  L
Sbjct: 206 -LESCGVTSDNCRD---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 386 DLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLD 435
            +    I      +L   L +  SL+ L L+ N++ D       + +L     L  L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 436 NNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPFSSLPHLQE 479
           +       +               L  L +S N         +      P       L+ 
Sbjct: 322 SCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP----GSVLRV 374

Query: 480 LYLR---------MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNL--------TSL 522
           L+L            L      +L    LR LDLS N L     G   L          L
Sbjct: 375 LWLADCDVSDSSCSSLAAT---LLANHSLRELDLSNNCLG--DAGILQLVESVRQPGCLL 429

Query: 523 TELDLSDNNIS 533
            +L L D   S
Sbjct: 430 EQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 7e-13
 Identities = 77/425 (18%), Positives = 125/425 (29%), Gaps = 97/425 (22%)

Query: 186 LTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMG 238
           +  L      L+     E +  L +   + L    +       I S++    +LAE  + 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 239 NNALS-----ALPAELGKLS-KLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNS 286
           +N L       +   L   S K+  L L +  L                 L  L LS+N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L     + G       LL     L  L+       + A  + L S L             
Sbjct: 125 LG----DAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAK---------- 169

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIP-SEIWEA-----GEITKLDLSRNSI-----QEL 395
                        KEL++   +++      + +       ++  L L    +     ++L
Sbjct: 170 ------PDF----KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 396 PPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
              ++S ASL+ L L  NK+ D         +L   S L  L +    +    + G  D+
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT---AKGCGDL 276

Query: 451 -------PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILD 503
                    L+ L L+ N               L E      L E         QL  L 
Sbjct: 277 CRVLRAKESLKELSLAGNELGD------EGARLLCET-----LLEPGC------QLESLW 319

Query: 504 LSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSLQALRLDG 553
           +   S                  L EL +S+N +       L   LG     L+ L L  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 554 NPLRS 558
             +  
Sbjct: 380 CDVSD 384

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 80/461 (17%), Positives = 137/461 (29%), Gaps = 128/461 (27%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKS 95
            Q + L    +     + +   LR  P L  LN+  N+L +     +   +      ++ 
Sbjct: 30  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L +       +         L     +   L+E        L+LSD    +  +  L E 
Sbjct: 90  LSLQNCC---LTGA--GCGVLSSTLRTLPTLQE--------LHLSDNLLGDAGLQLLCEG 136

Query: 156 LAD-CSKMSKLDVEGNKLTVLSNNLIASW----TMLTELIASKNLLN--GMPETIGSLS- 207
           L D   ++ KL +E   L+  S   +AS         EL  S N +N  G+      L  
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 208 ---RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
              +L  L L    +     +   C  L                +   + L  L L SN+
Sbjct: 197 SPCQLEALKLESCGV-----TSDNCRDLCGI-------------VASKASLRELALGSNK 238

Query: 265 LKEYCVEA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLLTGNPLRT 312
           L +  +            RL  L +    ++      L   +    +L++L L GN L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-- 296

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
                                    D  A    E L+    +L    + L ++  + +A 
Sbjct: 297 ------------------------GDEGARLLCETLLEPGCQL----ESLWVKSCSFTAA 328

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLS 427
                                     L+    L  L +S N+++D         +    S
Sbjct: 329 ------------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 428 SLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYN 461
            L  L L +  +          +         L+ LDLS N
Sbjct: 371 VLRVLWLADCDVS---DSSCSSLAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 62/366 (16%), Positives = 103/366 (28%), Gaps = 80/366 (21%)

Query: 231 SLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDL 282
            +    +    LS       L  L +   + L    L E   +           L+ L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
            +N L     ++G    L+ L      ++ L        T A    L S L         
Sbjct: 64  RSNELG----DVGVHCVLQGLQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLP----- 113

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG------EITKLDLSRNSI---- 392
                          T +EL L    L     ++   G       + KL L   S+    
Sbjct: 114 ---------------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 393 -QELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLR----QV 442
            + L   L +    + L +S N I +         +  S   L  LKL++  +     + 
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRIL 502
                     L+ L L  N            +  L    L    R           LR L
Sbjct: 219 LCGIVASKASLRELALGSN------KLGDVGMAELCPGLLHPSSR-----------LRTL 261

Query: 503 DLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSLQALRLD 552
            + +  +       +    +   SL EL L+ N +       L   L      L++L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 553 GNPLRS 558
                +
Sbjct: 322 SCSFTA 327

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
            N  L  VP+     IP   Q L L+ N I  L     F  L +LQ+LY    +L   PT
Sbjct: 20  QNIRLASVPAG----IPTDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPT 74

Query: 492 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            +  +L QL  LDL+ N L+SIP G F NL SLT + L +N
Sbjct: 75  GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP----ELGLLEPSLQALRLDGN 554
           + L L+ N +  +  G F +L +L +L  + N ++A+P     +L      L  L L+ N
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT----QLTQLDLNDN 91

Query: 555 PLRSIRRTILDRGTK 569
            L+SI R   D    
Sbjct: 92  HLKSIPRGAFDNLKS 106

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             ++ + + L+++P+ I    +  +L L+ N I +L P +     +LQ L  + NK+   
Sbjct: 15  TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           RL L+ N+I  +   +     +L + Y  +N L+A+P  +  KL++L  LDL+ N LK
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            + +L  + N +  +P  +      L  L L+ N +K  P     +L SL+ + L NNP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSL 96
           ++   L  + I     + +   L     +  + +S N +       L   I     L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 97  DVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + S     ++ DEI      L++      +L          + LSD          L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT--------VRLSDNAFGPTAQEPLIDF 117

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
           L+  + +  L +  N L   +   IA    L EL  +K   N           L  +   
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNA--------PPLRSIICG 167

Query: 216 QNRI-----LSIPSSISGCCSLAEFYMGNN------ALSALPAELGKLSKLGTLDLHSNQ 264
           +NR+          +      L    M  N          L   L    +L  LDL  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 265 LKEYCVEA------CQLRLSVLDLSNNSL---------SGLPPEIGKMTTLRKLLLTGNP 309
                  A          L  L L++  L                 +   L+ L L  N 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNE 285

Query: 310 LR 311
           + 
Sbjct: 286 IE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 46/265 (17%), Positives = 85/265 (32%), Gaps = 68/265 (25%)

Query: 360 KELSLEGMNLSAIPSEIWEAGE-----------ITKLDLSRNSI-----QELPPELSSCA 403
           +      +    +  EI EA             +  + LS N+      + L   LS   
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 404 SLQTLILSRNKIKD-------------WPDAILTSLSSLSCLKLDNNPLR----QVPSDG 446
            L+ L L  N +                 +    +   L  +    N L     +  +  
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQ 506
           F+   +L  + +  N               ++   +   L E    +   Q+L++LDL  
Sbjct: 183 FQSHRLLHTVKMVQN--------------GIRPEGIEHLLLEG---LAYCQELKVLDLQD 225

Query: 507 NSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLE-PSLQALRLDGNP 555
           N+       ++    K+  +L EL L+D  +S     A+      LE   LQ LRL  N 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 556 LRSIRRTILDRGTKAVLKYLKDKIP 580
           +            + +   + +K+P
Sbjct: 286 IE-------LDAVRTLKTVIDEKMP 303

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 47/344 (13%), Positives = 104/344 (30%), Gaps = 87/344 (25%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNSLS-----GLPPEIGKM 297
           + + S +    L  + +     ++          +  + LS N++       L   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
             L     +      ++  +        L+ L   L +                   + +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEA-----LRLLLQALLKC-------------PKLHTVRL 101

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--------------LPPELSSCA 403
           +             +   + +   +  L L  N +                +  +  +  
Sbjct: 102 SDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 404 SLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPML 453
            L+++I  RN++++     W      S   L  +K+  N +R      +  +G      L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 454 QILDLSYN---------IASLPENPPFSSLPHLQELYLR---------MQLREAPTDILR 495
           ++LDL  N         +A         S P+L+EL L            + +A + +  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIA-----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 496 LQQLRILDLSQNSL-----QSIPEGFK-NLTSLTELDLSDNNIS 533
              L+ L L  N +     +++       +  L  L+L+ N  S
Sbjct: 274 -IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 57/365 (15%), Positives = 100/365 (27%), Gaps = 100/365 (27%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196
            +L     +     S+   L +   + ++ + GN +   +   ++               
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS--------------- 53

Query: 197 NGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKL 255
               E I S   L   +        +   I      L +              L K  KL
Sbjct: 54  ----ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-------------ALLKCPKL 96

Query: 256 GTLDLHSNQLKEYCVEAC------QLRLSVLDLSNNSLS--------------GLPPEIG 295
            T+ L  N       E           L  L L NN L                +  +  
Sbjct: 97  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
               LR ++   N L        NG      K  +S                   +   +
Sbjct: 157 NAPPLRSIICGRNRLE-------NGSMKEWAKTFQS-----------------HRLLHTV 192

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASLQTLIL 410
            +    +  EG+    +   +    E+  LDL  N+        L   L S  +L+ L L
Sbjct: 193 KMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 411 SRNKIKD-WPDAILTSL-----SSLSCLKLDNNPLRQVPSDGFKDI--------PMLQIL 456
           +   +      A++ +        L  L+L  N +     D  + +        P L  L
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE---LDAVRTLKTVIDEKMPDLLFL 308

Query: 457 DLSYN 461
           +L+ N
Sbjct: 309 ELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 71/300 (23%)

Query: 3   RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI----- 57
             + + +       S+     V +E+ +      +     +   L  + L+ N       
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQ 111

Query: 58  EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM---------LKSLDVSFNSI 103
           E L + L     L  L + +N L       +  A+ EL +         L+S+    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 104 -----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKASNNCIT-- 150
                 +      S   L       N ++       L   L  C  L      +N  T  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 151 ---SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
              +L   L     + +L +    L+      +          A   L N          
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKLEN---------I 274

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            L  L L  N I      +    +L                  K+  L  L+L+ N+  E
Sbjct: 275 GLQTLRLQYNEI-----ELDAVRTLKT------------VIDEKMPDLLFLELNGNRFSE 317

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 38/101 (37%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
               L  VP+     IP   Q+L L  N I  L     F  L  L  L L   QL   P 
Sbjct: 17  SGKSLASVPTG----IPTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA 71

Query: 492 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            +  +L QL  L L+ N L+SIP G F NL SLT + L +N
Sbjct: 72  GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP----ELGLLEPSLQALRLDGN 554
           ++L L  N +  +  G F  LT LT LDL +N ++ LP     +L      L  L L+ N
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT----QLTQLSLNDN 88

Query: 555 PLRSIRRTILDRGTK 569
            L+SI R   D    
Sbjct: 89  QLKSIPRGAFDNLKS 103

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             +   G +L+++P+ I        L L  N I +L P +      L  L L  N++   
Sbjct: 12  TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L L+ N+I  +   +      L    + NN L+ LPA +  KL++L  L L+ NQLK
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           ++T+LDL  N +  LP  +      L  L L+ N++K  P     +L SL+ + L NNP
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILR-LQQLRILDLSQNSLQSIP 513
           ++ L+  +  + +   +++    +EL LR        ++   L Q   +D S N ++ + 
Sbjct: 1   MVKLTAEL--IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL- 57

Query: 514 EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 560
           +GF  L  L  L +++N I  +   L    P L  L L  N L  + 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 23/161 (14%)

Query: 346 EDLITMATRLS--VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
            +LI  A + +  V  +EL L G  +  I +      +   +D S N I++L        
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLR 64

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462
            L+TL+++ N+I    + +  +L  L+ L L NN L ++   D    +  L  L +  N 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN- 123

Query: 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILD 503
                  P ++  H + LY+          I ++ Q+R+LD
Sbjct: 124 -------PVTNKKHYR-LYV----------IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT 491
           +KL    + Q  +  + +    + LDL      + EN   ++L     +           
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD 58

Query: 492 DILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQA 548
               L++L+ L ++ N +  I EG  + L  LTEL L++N++  L  +L  L    SL  
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTY 117

Query: 549 LRLDGNPL 556
           L +  NP+
Sbjct: 118 LCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FP 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPE--DLADCSKMSKLDVE 168
               L     ++N++  +   L + L +L++   +NN +  L +   LA    ++ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNKLTVLSN 177
            N +T   +
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 30/155 (19%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           + L+   I++   + ++    + L L   KI    + +  +L     +   +N +R++  
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILD 503
           DGF  +  L+ L ++ N I  + E    +                       L  L  L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQA-----------------------LPDLTELI 94

Query: 504 LSQNSLQSIPE--GFKNLTSLTELDLSDNNISALP 536
           L+ NSL  + +     +L SLT L +  N ++   
Sbjct: 95  LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +  R   LDL   +I  I +  +           +N +  L      L +L TL +++N+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 265 LK---EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
           +    E   +A    L+ L L+NNSL  L     +  + +L  L +  NP+
Sbjct: 76  ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
           +   I    +   +  +  +LD+ G K+ V+ N L A+      +  S N +  + +   
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L RL  L ++ NRI  I   +      L E  + NN+L  L     L  L  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 262 SN 263
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             AV  ++L L    I  ++     L     ++ S N++ +L      L  LK+L V+ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74

Query: 102 SIMKIPDEIGSA-TALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
            I +I + +  A   L +   ++N L EL     L    +L+      N +T+   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + ++   I +   +  +A    + D    ++  + +             S+N I  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLD 213
                ++  L V  N++  +   L  +   LTELI + N L  + +   + SL  L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 214 LHQNRILSIP 223
           + +N + +  
Sbjct: 120 ILRNPVTNKK 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 473 SLPHLQELYL---RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 529
           +   ++EL L   R    +        ++L  L      L SI      L  L +L+LSD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 530 NNISALPPELGLLEPSLQALRLDGNPLRSI 559
           N +S     L    P+L  L L GN ++ +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK- 266
           + + LD  ++    +         L      N  L+++ A L KL+KL  L+L  N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 267 --EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
             E   E C   L+ L+LS N +  L     + K+  L+ L L    +
Sbjct: 79  GLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 360 KELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           KEL L+    +    E    E  E+  L      +  +   L     L+ L LS N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSG 78

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPE--NPPFSS 473
             + +     +L+ L L  N ++ + + +  K +  L+ LDL    + +L +     F  
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138

Query: 474 LPHLQEL 480
           LP L  L
Sbjct: 139 LPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI 512
           L + +   N   L           L+ L        +  ++ +L +L+ L+LS N +   
Sbjct: 22  LVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG 79

Query: 513 PEGF-KNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPL 556
            E   +   +LT L+LS N I  L   +  L+   +L++L L    +
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 29/140 (20%)

Query: 401 SCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
           + + ++ L+L  ++  +   + +      L  L   N  L  +       +  L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 460 YN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE--GF 516
            N ++   E                               L  L+LS N ++ +      
Sbjct: 73  DNRVSGGLEVLAEK-----------------------CPNLTHLNLSGNKIKDLSTIEPL 109

Query: 517 KNLTSLTELDLSDNNISALP 536
           K L +L  LDL +  ++ L 
Sbjct: 110 KKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
            +L+ L   +  +  +  +L  L  L  L +S N++S     + E    L  L++S N I
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 104 MKIPD 108
             +  
Sbjct: 101 KDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L  + +N  KL+        L  L+  +  L+ + A + +L+ LK L++S N +    + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N++K+L +   L +  NL      N  +T+L +
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D S +   +L         L      N  +TS+  +L   +K+ KL++  N+++     L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N +  +     +  L  L  LDL    + ++ 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 1/104 (0%)

Query: 456 LDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
           +D+   I     N   +++  L     +    +          L  L L    L S+   
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN 66

Query: 516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
              L  L +L+LS+N I      L    P+L  L L GN L+ I
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           +V    L     N   I     E   +  L L    +  +   L     L+ L LS N+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRI 83

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--F 471
               D +   L +L+ L L  N L+ + + +  K +  L+ LDL    + +L +     F
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 472 SSLPHLQEL 480
             LP L  L
Sbjct: 144 KLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 514
           +LD   +     E    +   +L+ L L      + +++ +L +L+ L+LS+N +    +
Sbjct: 30  VLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 515 G-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPL 556
              + L +LT L+LS N +  +   L  L+    L++L L    +
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDIS-TLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 29/157 (18%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
           + +D+ R    EL     + A+++ L+L   K  D   + +     +L  L L N  L  
Sbjct: 6   SGMDMKRRIHLEL--RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRI 501
           V       +P L+ L+LS N      +     LP+L  L                     
Sbjct: 64  V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL--------------------- 100

Query: 502 LDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALP 536
            +LS N L+ I      K L  L  LDL +  ++ L 
Sbjct: 101 -NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L    +N  K++        L  L++ +  L  + + + +L  LK L++S N I    D 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N+LK++ +   L +   L      N  +T+L +
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
           V+L+ L L +  +  +  +L  LP L  L +S N++      + E L  L  L++S N +
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 104 MKIPD 108
             I  
Sbjct: 108 KDIST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D   +   ++       +NL      N  + S+  +L    K+ KL++  N++    + L
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N L  +     +  L  L  LDL    + ++ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
             +    +    A+   +  L +    L  +SN                         + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------------------LP 68

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L +L +L+L +NRI      ++    +L    +  N L  +     L KL  L +LDL 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 262 SNQLKEY 268
           + ++   
Sbjct: 129 NCEVTNL 135

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 48/242 (19%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWP-----DAILTSLSSLS 430
           IT LDL  N              S+  AS+ +L L  N +           +    ++++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 431 CLKLDNNPLR----QVPSDGFKDIP-MLQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L        +     IP  +  LDLS N         +A +  + P     H
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP----NH 226

Query: 477 LQELYLRM-QLREAPTDIL-----RLQQLRILDLSQNSL--------QSIPEGFKNLTSL 522
           +  L L +  L     + L      L+ L+ + L  + +        +++   F N+  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 523 TELDLSDNNIS-----ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 577
             +D +   I       +   +  L        L    L   ++   +     +   L++
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 578 KI 579
            I
Sbjct: 347 SI 348

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 65/401 (16%), Positives = 118/401 (29%), Gaps = 101/401 (25%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKSLDVSFNSIMKIPDEIGSA 113
           ++E       +T L++S N L       L  A       + SL++S NS+        ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NS 68

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKL 172
             LV+       L  +P+++   LNLS    S      L + LA     ++ LD+  N  
Sbjct: 69  DELVQI------LAAIPANV-TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 173 T-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--------LIRLDLHQNRI 219
           +                 +T L    N L    ++   L +        +  L+L  N +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------- 272
                +   C  LA+F                 + + +LDL +N L              
Sbjct: 180 -----ASKNCAELAKFLASIP------------ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
               +  L+L  N L G     L      +  L+ + L  + +           +    K
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCK 274

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----GEI 382
            L +  P                    +    KE+             I        G+ 
Sbjct: 275 ALGAAFPNI-------------QKIILVDKNGKEIHPSHSIP------ISNLIRELSGKA 315

Query: 383 TKLDLSRNSI------QELPPELSSCASLQTLILSRNKIKD 417
               L    +      Q    +L+    L+  I +   + +
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 60/288 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPL-LTVLNVSHNKLSE-----LPAAIGELH-MLK 94
           +  L L+ NN+      +L +   N P  +T LN+S N L       L   +  +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           SL++S N +        S+  LVK       L  +P ++   L+L     S+   +   +
Sbjct: 84  SLNLSGNFL-----SYKSSDELVKT------LAAIPFTI-TVLDLGWNDFSSKSSSEFKQ 131

Query: 155 DLADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
             ++  + ++ L++ GN L       L   L A    +  L    N L    +    L++
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--SKNCAELAK 189

Query: 209 --------LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAEL 249
                   +  LDL  N +       +    S     +    +  N L       L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLS 288
             L  L T+ L  + +K    E C+          ++ ++D +   + 
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 7e-08
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 20/176 (11%)

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
           W   +  + ++S     +L P L +   L  L +              +L SL  +    
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGG 204

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRM--- 484
            P   V      D+P L+ L L            +            P+L+ L +     
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 485 --QLREAPTDILRLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 533
              + E   +   L QL  +D+S   L     + + +    +  L  +++  N +S
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 45/245 (18%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM---LTELIASK 193
           + +  +       + + + + +  +            +       SW     L+ ++ + 
Sbjct: 112 ITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF------------------ 235
            LLN +     +   + +      + L I S       + +                   
Sbjct: 172 PLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231

Query: 236 -YMGNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEA-----CQLRLSVLDLSNNSL 287
            Y  +  ++         +   L  L +   + +   VE         +L  +D+S   L
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 288 SG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           +      L   + K+  L+ + +  N L           +  + K L+  LP   D   S
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYL-----------SDEMKKELQKSLPMKIDVSDS 340

Query: 343 TTKED 347
              +D
Sbjct: 341 QEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              ++         +             +S  +  +L   +  + +L +L +   + + I
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                              LK L         +      ++ +  +    +D   + KL 
Sbjct: 188 GK------------KPRPNLKSL--------EIISGGLPDSVVEDILG--SDLPNLEKLV 225

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--- 223
           +         +  +  +  L                      L  L +      ++    
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSK--------------DRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 -SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277
                    L    +    L+      L   + K+  L  +++  N L +   +  Q  L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

Query: 278 SV-LDLSNN 285
            + +D+S++
Sbjct: 332 PMKIDVSDS 340

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 509 LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPLR 557
             S+P  F      TEL L+ NN++ALPP  GLL+  P+L+   L  NP R
Sbjct: 22  WASLPTAF--PVDTTELVLTGNNLTALPP--GLLDALPALRTAHLGANPWR 68

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 499 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
              L L+ N+L ++P G    L +L    L  N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 23/193 (11%)

Query: 399 LSSCASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI---- 450
           ++ C  ++TL++  +   +    W   +    +SL  L        ++     + I    
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQEL-----YLRMQLREAPTDILRLQQLRILDLS 505
             L  + +  +   L     F +  +L+E         + + E   +++  ++L  L LS
Sbjct: 220 RSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 506 QNSLQSIPEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 564
                 +P  F     + +LDL      +     L    P+L+ L          R  I 
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET--------RNVIG 330

Query: 565 DRGTKAVLKYLKD 577
           DRG + + +Y K 
Sbjct: 331 DRGLEVLAQYCKQ 343

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 59/375 (15%), Positives = 102/375 (27%), Gaps = 72/375 (19%)

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLS 253
           +L  +   I +L  L      + ++  +    +     L   +               LS
Sbjct: 14  VLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE-FQNQRFSAEVLS 72

Query: 254 KLGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS--GLPPEIGKMTTLRKLL 304
            L  L+L   ++               +  L  ++L++  L   GL   +      RKL 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N L            P   K LR  L  ++                ++      L L
Sbjct: 133 LQLNSL-----------GPEACKDLRDLLLHDQ---------------CQI----TTLRL 162

Query: 365 EGMNLS-----AIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASLQTLILSRNK 414
               L+      +   +     +T L L    +     + L  +L     LQ L ++ N 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 415 IKDWP----DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDLSYNIASLP 466
             D              SL  L L  N L     QV  D          + +S       
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT----- 277

Query: 467 ENPPFSS--LPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEGFKNL 519
           E    S      L E+  R         + R  +L + DL  +           +  +  
Sbjct: 278 EGTAVSEYWSVILSEV-QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVE 336

Query: 520 TSLTELDLSDNNISA 534
             +  L     +  +
Sbjct: 337 GEVRALLEQLGSSGS 351

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLS----SLSCLKLDNNPLRQVPSDGFKDI---- 450
            ++C +L+ L L  + + D     L+       SL  L +      +V     + +    
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRC 210

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDIL--------RLQQLRIL 502
           P L+ L L+  +            P L+EL       E   D+           ++LR L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 503 DLSQN-SLQSIPEGFKNLTSLTELDLSDNNIS 533
               +     +P  +   + LT L+LS   + 
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 79/534 (14%), Positives = 162/534 (30%), Gaps = 105/534 (19%)

Query: 40  KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLK 94
               AV    +I     +  +  +L+  P     N+  +         + A       L+
Sbjct: 51  GNCYAVSPATVIRRFPKVRSV--ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
            + +     M + D+      L     S    K L   L  C   S           L  
Sbjct: 109 EIRLKR---MVVTDD-----CLELIAKSFKNFKVL--VLSSCEGFST--------DGLAA 150

Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSLSR-- 208
             A C  + +LD+  + +  +S + ++    ++T L  L  S          +  L    
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 209 --LIRLDLHQNRILS-IPSSISGCCSLAEFYMG-------NNALSALPAELGKLSKLGTL 258
             L  L L++   L  + + +     L E   G        +  S L   L    +L  L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 316
               + +  Y      +  RL+ L+LS  ++            L KLL     L+ L   
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ--------SYDLVKLLCQCPKLQRL--W 320

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
           +++    A L+ L S   +                        +EL +       +   +
Sbjct: 321 VLDYIEDAGLEVLASTCKDL-----------------------RELRVFPSEPFVMEPNV 357

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKL- 434
                     L+   +  +      C  L++++    ++ +     I  +  +++  +L 
Sbjct: 358 ---------ALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 435 ------DNNPLRQVPSDGFKDI----PMLQILDLSYNIASLPENPPFSSLPHLQELYLR- 483
                  +    +    GF  I      L+ L LS  +         +    ++ L +  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 484 -MQLREAPTDILR-LQQLRILDLSQNSL--QSIPEGFKNLTSLTELDLSDNNIS 533
                     +L     LR L++       +++      L ++  L +S  ++S
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 381 EITKLDLSRN---SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLD 435
           E+  L+LS N    + ++   +    +L+ L LS N++K   +  L  +  L    L LD
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLD 228

Query: 436 NNPLRQVPSDG-------FKDIPMLQILD 457
            N L     D         +  P L  LD
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	582
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.62
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.27
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.42

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.5e-50  Score=422.68  Aligned_cols=494  Identities=20%  Similarity=0.216  Sum_probs=417.0

Q ss_pred             cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhhh
Q 007984           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (582)
Q Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~   88 (582)
                      ..++++++..++.+|.++               .+++++|+++++.++.++. .|.++++|++|++++|.++.+ +.+|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~---------------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~   77 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI---------------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH   77 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCceEccCCCcccCCCCC---------------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence            357999999999999876               4689999999999998865 899999999999999999977 56899


Q ss_pred             CCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCC--CCccccccCCCCcE
Q 007984           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK  164 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~--~i~~~l~~~~~L~~  164 (582)
                      .+++|++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+.  .+|..++.+++|++
T Consensus        78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A           78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            999999999999999987 778999999999999999998776 67899999999999999998  47889999999999


Q ss_pred             EEccCCcccccchhhhcccccCc----EEEccCCccCccchhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEEEc-
Q 007984          165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM-  237 (582)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l-  237 (582)
                      |++++|+++.+.+..++.+.+|+    ++++++|.+..++.......+|+.|++++|.+.  ..+..+.++++++.+.+ 
T Consensus       158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~  237 (606)
T 3vq2_A          158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI  237 (606)
T ss_dssp             EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence            99999999998887788887765    899999999888766555569999999999875  33445555666655554 


Q ss_pred             --------------------------------CCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCC
Q 007984          238 --------------------------------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (582)
Q Consensus       238 --------------------------------~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~  285 (582)
                                                      ..+.+......+..+++|++++++++.+..++......+++.+++++|
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n  317 (606)
T 3vq2_A          238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC  317 (606)
T ss_dssp             EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC
T ss_pred             ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccc
Confidence                                            334444332337778899999999998888774444446999999999


Q ss_pred             CCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEec
Q 007984          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (582)
Q Consensus       286 ~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (582)
                      .+..+| .+ .+++|++|++++|......                                     .......++.++++
T Consensus       318 ~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-------------------------------------~~~~l~~L~~L~ls  358 (606)
T 3vq2_A          318 QLKQFP-TL-DLPFLKSLTLTMNKGSISF-------------------------------------KKVALPSLSYLDLS  358 (606)
T ss_dssp             CCSSCC-CC-CCSSCCEEEEESCSSCEEC-------------------------------------CCCCCTTCCEEECC
T ss_pred             cCcccc-cC-CCCccceeeccCCcCccch-------------------------------------hhccCCCCCEEECc
Confidence            887777 45 8899999999988532110                                     11123578999999


Q ss_pred             CCCCccC---ChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCCh-HHhhCCCCCCEeeCCCCCCcc
Q 007984          366 GMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQ  441 (582)
Q Consensus       366 ~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~  441 (582)
                      ++.+..+   +..+..+++|++|++++|.+..+|..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+..
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence            9988765   788888999999999999999998889999999999999999988765 568899999999999999999


Q ss_pred             CCCccccCCCCCcEEeCCCCcCCC-CCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCcc-chhhc
Q 007984          442 VPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFK  517 (582)
Q Consensus       442 ~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~  517 (582)
                      ..+..+..+++|++|++++|.+++ ..+..+..+++|++|++ .+.+... +..+..+++|++|++++|+++.+ |..+.
T Consensus       439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  518 (606)
T 3vq2_A          439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN  518 (606)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred             cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence            888889999999999999999987 45778999999999999 6566554 55788999999999999999976 77899


Q ss_pred             CCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          518 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       518 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      ++++|++|++++|+++.+|..+....++|+.|++++|++..
T Consensus       519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            99999999999999999999865553479999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.3e-48  Score=416.75  Aligned_cols=528  Identities=23%  Similarity=0.308  Sum_probs=327.0

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~~   89 (582)
                      ..+++++++++.+|.++               .+++++|+++++.++.++. .|.++++|++|++++|.+..+ +..+..
T Consensus         7 ~~~~cs~~~L~~ip~~~---------------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   71 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDL---------------PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK   71 (680)
T ss_dssp             SEEECCSSCCSSCCSCS---------------CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH
T ss_pred             CeeECCCCCcccccccc---------------CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc
Confidence            45777777777777655               2456666666666665543 466666666666666666544 445566


Q ss_pred             CCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEE
Q 007984           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD  166 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~  166 (582)
                      +++|++|++++|.+..++. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..+++|++|+
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            6666666666666665554 3556666666666666665554 3455666666666666655533 23355566666666


Q ss_pred             ccCCcccccchhhhc--ccccCcEEEccCCccCccc-hhhcC---------------------------CCCccEEeCCC
Q 007984          167 VEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGS---------------------------LSRLIRLDLHQ  216 (582)
Q Consensus       167 l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~l~~---------------------------~~~L~~L~l~~  216 (582)
                      +++|.++.+.+..+.  .+++|++|++++|.+..++ ..+..                           .++|+.|++++
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~  231 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN  231 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence            666665555444333  3355666666665554332 12211                           24455555555


Q ss_pred             CcCccC-CcCCcCCCC--CcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchhhh--cccccEEEccCCCCC--
Q 007984          217 NRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLS--  288 (582)
Q Consensus       217 ~~~~~~-~~~l~~~~~--L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~l~--  288 (582)
                      |.+... +..+..++.  |++|++++|.+..+ +..++.+++|++|++++|.+.......+  ..+++.++++++...  
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            555532 344544433  66666666666643 3445666666666666666655433221  223555655544222  


Q ss_pred             ----CCCc----cccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCcccc----ccchhhHHhhhhccc
Q 007984          289 ----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA----STTKEDLITMATRLS  356 (582)
Q Consensus       289 ----~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  356 (582)
                          .+|.    .+..+++|++|++++|.+..+....+....         .+........    ......  .......
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~Ls~n~~~~~~l~~~--~f~~~~~  380 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI---------NLKYLSLSNSFTSLRTLTNE--TFVSLAH  380 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT---------TCCEEECTTCBSCCCEECTT--TTGGGTT
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc---------CCcEEECCCCchhhhhcchh--hhccccc
Confidence                1221    344555566666655555444332222110         0000000000    000000  0000112


Q ss_pred             ccccEEEecCCCCccC-ChhhhccCCccEEEcCCCcCCc-CC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEee
Q 007984          357 VTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK  433 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (582)
                      ..++.+++.++.+..+ +..+..+++|++|++++|.+.. ++ ..+..+++|++|++++|++.++....|..+++|+.|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            4678888888888765 4455668888999998888864 55 4678888888888888888887777788888888888


Q ss_pred             CCCCCCcc--CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCc---------hhhhccCCCCE
Q 007984          434 LDNNPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP---------TDILRLQQLRI  501 (582)
Q Consensus       434 l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~---------~~~~~~~~L~~  501 (582)
                      +++|.+..  ..+..+..+++|+.|++++|.++.+.+.+|.++++|++|++ .+.+..++         ..+..+++|+.
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence            88888763  33445788888888888888888888778888888888888 55554432         12677888888


Q ss_pred             EecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhc
Q 007984          502 LDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD  565 (582)
Q Consensus       502 L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  565 (582)
                      |++++|.++.+|. .|.++++|++|++++|+++++|+..+..+++|+.|++++|.+..+++.+|.
T Consensus       541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            8888888888875 478888888888888888888888877778888888888888888877665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.4e-49  Score=427.66  Aligned_cols=503  Identities=27%  Similarity=0.332  Sum_probs=329.5

Q ss_pred             HHHHhhcCceecCCCCCC-Ccch--HHHhhhccccCCCccccccCccEEEcCCCCccc-hhHhh-cCCCCCcEEEcCCCC
Q 007984            5 LKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDL-RNLPLLTVLNVSHNK   79 (582)
Q Consensus         5 ~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-~~~~~-~~~~~L~~L~L~~~~   79 (582)
                      +...+.+++|+++++.+. .+|.  .+             ..+++|++|++++|.+.. ++..+ .++++|++|++++|.
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSLSGPVTTLTSL-------------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             CCCCTTCCEEECCSSEEEEEGGGGGGG-------------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             hccCCCCCEEECCCCcCCCcCCChHHH-------------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence            345678999999999876 4554  33             226667777777766552 23322 566677777777776


Q ss_pred             Cccc-chh---hhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCC-CCcc
Q 007984           80 LSEL-PAA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPE  154 (582)
Q Consensus        80 ~~~l-~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~i~~  154 (582)
                      ++.. +..   +..+++|++|++++|.+..... +..+++|++|++++|.+...+..+.++++|++|++++|.+. .++.
T Consensus       163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred             cCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence            6643 222   5566666666666666554322 25566666666666666543333666666666666666665 4455


Q ss_pred             ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccC-ccchhhcCC-CCccEEeCCCCcCc-cCCcCCcCCCC
Q 007984          155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCS  231 (582)
Q Consensus       155 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~l~~~~~  231 (582)
                      .+..+++|++|++++|.+....+.  ..+++|++|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+..+++
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            566666666666666665533332  15555666666666554 444444332 55666666665555 44555555556


Q ss_pred             CcEEEcCCCcCc-ccchh-hhccCCCcEEEcccCccc-ccchhhhc--ccccEEEccCC---------------------
Q 007984          232 LAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNN---------------------  285 (582)
Q Consensus       232 L~~L~l~~~~i~-~l~~~-l~~~~~L~~L~l~~~~~~-~~~~~~~~--~~L~~l~l~~~---------------------  285 (582)
                      |++|++++|.+. .+|.. +..+++|++|++++|.+. .++.....  .+++.+++++|                     
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            666666655555 44443 555555555555555554 22222111  13455555544                     


Q ss_pred             -----CCCC-CCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccc
Q 007984          286 -----SLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS  359 (582)
Q Consensus       286 -----~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (582)
                           .+.+ +|..+..+++|++|++++|.+....                                   .........+
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-----------------------------------p~~l~~l~~L  444 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-----------------------------------PSSLGSLSKL  444 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-----------------------------------CGGGGGCTTC
T ss_pred             ECCCCccccccCHHHhcCCCCCEEECcCCcccCcc-----------------------------------cHHHhcCCCC
Confidence                 4442 3444444555555555555443211                                   1112233578


Q ss_pred             cEEEecCCCCc-cCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCC
Q 007984          360 KELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (582)
Q Consensus       360 ~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  437 (582)
                      +.+++.+|.+. .+|..+..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..++.+++|++|++++|
T Consensus       445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN  524 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence            89999999887 678888888999999999998884 7778889999999999999998777777889999999999999


Q ss_pred             CCccCCCccccCCCCCcEEeCCCCcCCCCCC-------------------------------------------------
Q 007984          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPEN-------------------------------------------------  468 (582)
Q Consensus       438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------------------------------------  468 (582)
                      ++.+..+..+..+++|+.|++++|.+++..+                                                 
T Consensus       525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence            9987666678899999999999987653322                                                 


Q ss_pred             ---------------------CCCCCCccchhhhh-ccccc-cCchhhhccCCCCEEecCCCcCC-ccchhhcCCCCCCE
Q 007984          469 ---------------------PPFSSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTE  524 (582)
Q Consensus       469 ---------------------~~~~~~~~L~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~  524 (582)
                                           ..+..+++|+.|++ .+.+. .+|..++.+++|+.|++++|.++ .+|..+.++++|++
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence                                 23445677888888 55554 67888999999999999999998 78888999999999


Q ss_pred             EeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          525 LDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       525 L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      |+|++|++++..+..+..+++|++|++++|++..
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            9999999984444344445899999999998753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.2e-49  Score=423.88  Aligned_cols=536  Identities=27%  Similarity=0.285  Sum_probs=422.8

Q ss_pred             HHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCcc-chhH--hhcCCCCCcEEEcCCCCCc-c
Q 007984            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKE--DLRNLPLLTVLNVSHNKLS-E   82 (582)
Q Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~~~~--~~~~~~~L~~L~L~~~~~~-~   82 (582)
                      ..++++.++++.+.+..+|..             |..+++|++|++++|.+. .+|.  .+.++++|++|++++|.+. .
T Consensus        75 ~L~~L~~l~~~~~~~~~l~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  141 (768)
T 3rgz_A           75 SLTGLESLFLSNSHINGSVSG-------------FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP  141 (768)
T ss_dssp             TCTTCCEEECTTSCEEECCCC-------------CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC
T ss_pred             ccCcccccCCcCCCcCCCchh-------------hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc
Confidence            345566666666654444433             344899999999999987 4676  8999999999999999887 3


Q ss_pred             cchhh-hCCCCCcEEecCCCcCccC-Chh---hhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccc
Q 007984           83 LPAAI-GELHMLKSLDVSFNSIMKI-PDE---IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA  157 (582)
Q Consensus        83 l~~~~-~~~~~L~~L~l~~~~~~~l-~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~  157 (582)
                      ++..+ ..+++|++|++++|.+... +..   +.++++|++|++++|.+.... .+..+++|++|++++|.+......++
T Consensus       142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~  220 (768)
T 3rgz_A          142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLG  220 (768)
T ss_dssp             SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCBCT
T ss_pred             CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC-CcccCCcCCEEECcCCcCCCCCcccc
Confidence            44444 7899999999999999854 333   678999999999999988543 34789999999999999986555599


Q ss_pred             cCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc-cCCcCCcC-CCCCcEE
Q 007984          158 DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISG-CCSLAEF  235 (582)
Q Consensus       158 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~-~~~L~~L  235 (582)
                      .+++|++|++++|.++...+..+..+++|++|++++|.+....... .+++|++|++++|.+. .+|..+.. +++|++|
T Consensus       221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L  299 (768)
T 3rgz_A          221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL  299 (768)
T ss_dssp             TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred             cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence            9999999999999999777777999999999999999886433223 7899999999999998 77877766 4999999


Q ss_pred             EcCCCcCc-ccchhhhccCCCcEEEcccCccc-ccchh--hhcccccEEEccCCCCC-CCCccccCCC-CCCeEEccCCC
Q 007984          236 YMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVE--ACQLRLSVLDLSNNSLS-GLPPEIGKMT-TLRKLLLTGNP  309 (582)
Q Consensus       236 ~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~~--~~~~~L~~l~l~~~~l~-~~~~~l~~~~-~L~~L~l~~~~  309 (582)
                      ++++|.+. .+|..++.+++|++|++++|.+. .++..  ....+|+++++++|.+. .+|..+..++ +|++|++++|.
T Consensus       300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred             ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence            99999998 77889999999999999999997 56654  23345999999999988 4777788887 99999999998


Q ss_pred             CccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc-cCChhhhccCCccEEEcC
Q 007984          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLS  388 (582)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~  388 (582)
                      +.......+....       ...+........  ...............++.+++.+|.+. .+|..+..+++|++|+++
T Consensus       380 l~~~~~~~~~~~~-------~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  450 (768)
T 3rgz_A          380 FSGPILPNLCQNP-------KNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW  450 (768)
T ss_dssp             EEEECCTTTTCST-------TCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             cCCCcChhhhhcc-------cCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence            7542211111000       000000000000  000011222334567899999999887 677888889999999999


Q ss_pred             CCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCC
Q 007984          389 RNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE  467 (582)
Q Consensus       389 ~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  467 (582)
                      +|.+.. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.++..+++|++|++++|.+++..
T Consensus       451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  530 (768)
T 3rgz_A          451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI  530 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence            999884 7888899999999999999999877777899999999999999999777777999999999999999998888


Q ss_pred             CCCCCCCccchhhhh-ccccc-cCch------------------------------------------------------
Q 007984          468 NPPFSSLPHLQELYL-RMQLR-EAPT------------------------------------------------------  491 (582)
Q Consensus       468 ~~~~~~~~~L~~L~l-~~~~~-~~~~------------------------------------------------------  491 (582)
                      +..+..+++|++|++ .+.+. .+|.                                                      
T Consensus       531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  610 (768)
T 3rgz_A          531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR  610 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred             CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence            888999999999999 44332 2332                                                      


Q ss_pred             ----------------hhhccCCCCEEecCCCcCC-ccchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceeeccC
Q 007984          492 ----------------DILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDG  553 (582)
Q Consensus       492 ----------------~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~l~~  553 (582)
                                      .+..+++|+.||+++|+++ .+|..+.+++.|++|++++|+++ .+|..+.. +++|++||+++
T Consensus       611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~  689 (768)
T 3rgz_A          611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSS  689 (768)
T ss_dssp             CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCS
T ss_pred             cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCC
Confidence                            2334678999999999998 77889999999999999999999 55555544 59999999999


Q ss_pred             CCCCcchHHHhccc
Q 007984          554 NPLRSIRRTILDRG  567 (582)
Q Consensus       554 ~~~~~~~~~~~~~~  567 (582)
                      |++....+..|...
T Consensus       690 N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          690 NKLDGRIPQAMSAL  703 (768)
T ss_dssp             SCCEECCCGGGGGC
T ss_pred             CcccCcCChHHhCC
Confidence            99986666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.3e-48  Score=410.08  Aligned_cols=497  Identities=22%  Similarity=0.279  Sum_probs=408.4

Q ss_pred             cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCccc-chhhh
Q 007984           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (582)
Q Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l-~~~~~   88 (582)
                      -+.+++++..++.+|..+               ..++++|+++++.++.+ +..|.++++|++|++++|.+..+ |..|.
T Consensus        14 ~~~~~c~~~~l~~iP~~l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   78 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL---------------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ   78 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS---------------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred             CceEECCCCCcccCcCCC---------------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence            457899999999999877               45799999999999988 56899999999999999999866 67899


Q ss_pred             CCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEE
Q 007984           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL  165 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L  165 (582)
                      .+++|++|++++|.+..+ |..+.++++|++|++++|.+..+ +..+.++++|++|++++|.+..++ ..+..+++|++|
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL  158 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred             CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence            999999999999999865 67799999999999999999977 567889999999999999998763 345559999999


Q ss_pred             EccCCcccccchhhhcccccCc--EEEccCCccCccchhhcCCCCccEEeCCCCcCc-----------------------
Q 007984          166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-----------------------  220 (582)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----------------------  220 (582)
                      ++++|+++.+.+..++.+++|+  .+++++|.+..++........|+.|+++++...                       
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence            9999999999888899999999  899999999877655555578888888877411                       


Q ss_pred             ---cC-CcCCcCCC--CCcEEEcCCCcCcccch-hhhccCCCcEEEcccCcccccchhhhc-ccccEEEccCCCCCCC-C
Q 007984          221 ---SI-PSSISGCC--SLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL-P  291 (582)
Q Consensus       221 ---~~-~~~l~~~~--~L~~L~l~~~~i~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~l~~~-~  291 (582)
                         .+ +..+..+.  +|+.|++++|.+..++. .++.+++|++|++++|.++.++..... .+|+++++++|.+..+ +
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence               00 01112221  68889999998887654 478889999999999988877765433 3489999999988875 4


Q ss_pred             ccccCCCCCCeEEccCCCCc-cccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc
Q 007984          292 PEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (582)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (582)
                      ..+..+++|++|++++|.+. .++...+                                   .....++.+++.++.+.
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------------------~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCL-----------------------------------ENLENLRELDLSHDDIE  363 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTT-----------------------------------TTCTTCCEEECCSSCCC
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhh-----------------------------------hccCcCCEEECCCCccc
Confidence            46888899999999988764 2221111                                   12356788999988887


Q ss_pred             cC---ChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCCh-HHhhCCCCCCEeeCCCCCCccCCCc
Q 007984          371 AI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSD  445 (582)
Q Consensus       371 ~i---~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~  445 (582)
                      .+   +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+++... ..+..+++|++|++++|.+....+.
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence            55   55677789999999999998875 5578889999999999998877543 3478899999999999999988887


Q ss_pred             cccCCCCCcEEeCCCCcCCCC---CCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCcc-chhhcCC
Q 007984          446 GFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNL  519 (582)
Q Consensus       446 ~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l  519 (582)
                      .+..+++|++|++++|.+.+.   ....+..+++|++|++ .+.+..+ +..+..+++|+.|++++|+++.+ |..+.++
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  523 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL  523 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence            889999999999999988752   3356888999999999 5566655 56788999999999999999865 6779999


Q ss_pred             CCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          520 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       520 ~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      +.| +|++++|+++++++..+..+++|+.|++++|++..
T Consensus       524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            999 99999999999988877777999999999999863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.6e-47  Score=406.04  Aligned_cols=507  Identities=23%  Similarity=0.286  Sum_probs=387.2

Q ss_pred             ccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCC
Q 007984           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (582)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~  124 (582)
                      -+.++.+++.++.+|..+.  +++++|+++++.++.++. .|..+++|++|++++|.+..+ +..+.++++|++|++++|
T Consensus         6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            3679999999999987665  799999999999998765 699999999999999999976 667899999999999999


Q ss_pred             cCCcCCc-ccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccch-
Q 007984          125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-  201 (582)
Q Consensus       125 ~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-  201 (582)
                      .+..+|. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+....++.+++|++|++++|.+..++. 
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            9998886 5899999999999999999876 569999999999999999998888778999999999999999987654 


Q ss_pred             hh--cCCCCccEEeCCCCcCccCC-cCCcCC---------------------------CCCcEEEcCCCcCccc-chhhh
Q 007984          202 TI--GSLSRLIRLDLHQNRILSIP-SSISGC---------------------------CSLAEFYMGNNALSAL-PAELG  250 (582)
Q Consensus       202 ~l--~~~~~L~~L~l~~~~~~~~~-~~l~~~---------------------------~~L~~L~l~~~~i~~l-~~~l~  250 (582)
                      .+  ..+++|+.|++++|.+..++ ..+..+                           ++|+.|++++|.+... +.++.
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            33  35689999999999887553 333332                           5678888888888744 56677


Q ss_pred             ccC--CCcEEEcccCcccccchhhh--cccccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCcc---------cccc
Q 007984          251 KLS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT---------LRSS  316 (582)
Q Consensus       251 ~~~--~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~---------~~~~  316 (582)
                      .++  +|++|++++|.+..+....+  ..+|+++++++|.+..+ +..+.++++|++++++++....         +...
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence            665  49999999999988765433  34599999999998884 5578999999999999864321         1111


Q ss_pred             ccCCCcHHHHHHHHhcCCCCCcccc-ccchhhHHhhhhcccccccEEEecCCCC--ccCChhhhc---cCCccEEEcCCC
Q 007984          317 LVNGPTPALLKYLRSRLPENEDSEA-STTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWE---AGEITKLDLSRN  390 (582)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~--~~i~~~~~~---~~~L~~L~l~~~  390 (582)
                      .+..            +........ .................++.++++++.+  ..++...+.   .++|+.|++++|
T Consensus       324 ~~~~------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          324 SFQW------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             TTTT------------CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             hccc------------CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence            1100            000000000 0000001111122234566666665542  233322221   246777777777


Q ss_pred             cCCcC-CccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCC--CC
Q 007984          391 SIQEL-PPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LP  466 (582)
Q Consensus       391 ~l~~l-~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~  466 (582)
                      .++.+ +..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+..+....|..+++|+.|++++|.+.  +.
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            77664 4467788888888888888764 55566788888888888888888887777888888888888888776  34


Q ss_pred             CCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCCccch---------hhcCCCCCCEEeCCCCcCCcC
Q 007984          467 ENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIPE---------GFKNLTSLTELDLSDNNISAL  535 (582)
Q Consensus       467 ~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~---------~~~~l~~L~~L~l~~n~l~~l  535 (582)
                      .+..+..+++|++|++ .+.+..++. .+..+++|+.|++++|.++.++.         .+.++++|++|++++|+++.+
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            5667888999999999 666666655 47889999999999998886532         278899999999999999999


Q ss_pred             CCcccccccccceeeccCCCCCcchHHHhccc
Q 007984          536 PPELGLLEPSLQALRLDGNPLRSIRRTILDRG  567 (582)
Q Consensus       536 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  567 (582)
                      |...+..+++|++|++++|.+..+++.+|...
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            99888888999999999999999999888654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5e-46  Score=393.39  Aligned_cols=483  Identities=22%  Similarity=0.258  Sum_probs=405.8

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEccC
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~  123 (582)
                      .-+.++.++..++.+|..+..  ++++|+++++.++.+ +..|..+++|++|++++|.+..+ |..|.++++|++|++++
T Consensus        13 ~~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           13 VNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            356889999999999887754  899999999999977 56899999999999999999866 67799999999999999


Q ss_pred             CcCCcC-CcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCcc-c
Q 007984          124 NQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P  200 (582)
Q Consensus       124 ~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~  200 (582)
                      |.+..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            999865 66889999999999999999987 56799999999999999999987655577799999999999999876 5


Q ss_pred             hhhcCCCCcc--EEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc--------------------------cc-chhhhc
Q 007984          201 ETIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGK  251 (582)
Q Consensus       201 ~~l~~~~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~--------------------------~l-~~~l~~  251 (582)
                      ..+..+++|+  .|++++|.+..++........|+.|+++++...                          .+ +..+..
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence            6788899999  999999999977665556678999999887511                          00 111222


Q ss_pred             cC--CCcEEEcccCcccccchhhh--cccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHH
Q 007984          252 LS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (582)
Q Consensus       252 ~~--~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  327 (582)
                      +.  +|+++++++|.+..++...+  ..+|+++++++|.+..+|..+.++++|++|++++|.+..+....+         
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~---------  321 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA---------  321 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG---------
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh---------
Confidence            21  78899999999888776533  345999999999999998888999999999999998865432211         


Q ss_pred             HHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc-cCChh-hhccCCccEEEcCCCcCCcC---CccccCC
Q 007984          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSE-IWEAGEITKLDLSRNSIQEL---PPELSSC  402 (582)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~-~~~~~~L~~L~l~~~~l~~l---~~~l~~~  402 (582)
                                                .....++.+++.++.+. .++.. +..+++|++|++++|.+..+   +..+..+
T Consensus       322 --------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  375 (606)
T 3t6q_A          322 --------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL  375 (606)
T ss_dssp             --------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred             --------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence                                      22357899999999876 56554 66799999999999999875   5578999


Q ss_pred             CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCC-ccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhh
Q 007984          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY  481 (582)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  481 (582)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  455 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN  455 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence            999999999999998888889999999999999999987644 4488999999999999999998888999999999999


Q ss_pred             h-cccccc----CchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCC
Q 007984          482 L-RMQLRE----APTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP  555 (582)
Q Consensus       482 l-~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~  555 (582)
                      + .+.+..    .+..+..+++|+.|++++|.++.+ |..+.++++|++|++++|+++++++..+..+++| .|++++|.
T Consensus       456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            9 555443    235688999999999999999977 5779999999999999999998877777777999 99999999


Q ss_pred             CCcchHHHhcc
Q 007984          556 LRSIRRTILDR  566 (582)
Q Consensus       556 ~~~~~~~~~~~  566 (582)
                      +..+++..|..
T Consensus       535 l~~~~~~~~~~  545 (606)
T 3t6q_A          535 ISIILPSLLPI  545 (606)
T ss_dssp             CCCCCGGGHHH
T ss_pred             ccccCHhhccc
Confidence            99998876653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.4e-46  Score=395.83  Aligned_cols=477  Identities=21%  Similarity=0.221  Sum_probs=401.8

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCccc-chh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l-~~~   86 (582)
                      +.+++|+++++.++.++...+..            +++|++|++++|.++.+ +..|.++++|++|++++|.++.+ |..
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            57899999999999888755443            88999999999999987 56899999999999999999977 778


Q ss_pred             hhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCC--cCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCC
Q 007984           87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L  162 (582)
                      |..+++|++|++++|.+..++ ..+..+++|++|++++|.+.  .+|..+.++++|++|++++|.+..++ ..++.+.+|
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            999999999999999999876 66899999999999999998  47889999999999999999988653 345555544


Q ss_pred             ----cEEEccCCcccccchhhhcccccCcEEEccCCccC--ccchhhcCCCCccEEeC----------------------
Q 007984          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL----------------------  214 (582)
Q Consensus       163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l----------------------  214 (582)
                          .+|++++|.++.++...+... +|+++++++|.+.  ..+..+..++.|+.+++                      
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                489999999999988877666 8999999999774  34556667777666655                      


Q ss_pred             -----------CCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEcc
Q 007984          215 -----------HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (582)
Q Consensus       215 -----------~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~  283 (582)
                                 ..+.+......+..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++.. ...+++.++++
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~  336 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLT  336 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEE
T ss_pred             hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeecc
Confidence                       33344433233788899999999999999888 888899999999999999888754 55569999999


Q ss_pred             CCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEE
Q 007984          284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (582)
Q Consensus       284 ~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  363 (582)
                      +|..... ..+..+++|++|++++|.++.....                                 .........++.++
T Consensus       337 ~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L~  382 (606)
T 3vq2_A          337 MNKGSIS-FKKVALPSLSYLDLSRNALSFSGCC---------------------------------SYSDLGTNSLRHLD  382 (606)
T ss_dssp             SCSSCEE-CCCCCCTTCCEEECCSSCEEEEEEC---------------------------------CHHHHCCSCCCEEE
T ss_pred             CCcCccc-hhhccCCCCCEEECcCCccCCCcch---------------------------------hhhhccCCcccEeE
Confidence            9954432 2567899999999999987644200                                 01122346789999


Q ss_pred             ecCCCCccCChhhhccCCccEEEcCCCcCCcCCc--cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCcc
Q 007984          364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ  441 (582)
Q Consensus       364 l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  441 (582)
                      +.++.+..++..+..+++|++|++++|.+..++.  .+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus       383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  462 (606)
T 3vq2_A          383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD  462 (606)
T ss_dssp             CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence            9999999999888889999999999999887643  78899999999999999998887889999999999999999987


Q ss_pred             -CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccchhhcC
Q 007984          442 -VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGFKN  518 (582)
Q Consensus       442 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~~~~~~  518 (582)
                       +.+..+..+++|++|++++|.+++..+..+..+++|++|++ .+.+... +..+..+++|++|++++|+++.+|..+..
T Consensus       463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~  542 (606)
T 3vq2_A          463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH  542 (606)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred             cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence             45566899999999999999999998889999999999999 6666655 67889999999999999999999988989


Q ss_pred             CC-CCCEEeCCCCcCCc
Q 007984          519 LT-SLTELDLSDNNISA  534 (582)
Q Consensus       519 l~-~L~~L~l~~n~l~~  534 (582)
                      ++ +|++|++++|.+..
T Consensus       543 l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          543 FPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             SCTTCCEEECCSCCCCC
T ss_pred             hcccCcEEEccCCCccc
Confidence            87 59999999998873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=388.18  Aligned_cols=492  Identities=22%  Similarity=0.266  Sum_probs=371.9

Q ss_pred             cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccc-hhhh
Q 007984           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (582)
Q Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~-~~~~   88 (582)
                      ...+++++..++.+|..+               .+++++|+++++.++.++ ..|..+++|++|++++|.++.++ ..|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l---------------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             TTEEECCSSCCSSCCSSS---------------CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             CcEEEeCCCCccccCCCc---------------cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence            356899999999999866               457999999999999875 47999999999999999999774 5789


Q ss_pred             CCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCC--CccccccCCCCcE
Q 007984           89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK  164 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~  164 (582)
                      .+++|++|++++|.+..++ ..+.++++|++|++++|.+..++. .+.++++|++|++++|.+..  +|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            9999999999999998775 678999999999999999998865 68899999999999999885  6888999999999


Q ss_pred             EEccCCcccccchhhhcccccC----cEEEccCCccCccchhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEEEcC
Q 007984          165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMG  238 (582)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~  238 (582)
                      |++++|+++.+.+..++.+++|    +++++++|.+..++.......+|+.|+++++...  .++..+..+++++...+.
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999999888888999888    8999999999876543333448999999987433  233344455555544433


Q ss_pred             CCcC------cccc-hhhhccC--CCcEEEcccC-cccccchh--hhcccccEEEccCCCCCCCCccccCCCCCCeEEcc
Q 007984          239 NNAL------SALP-AELGKLS--KLGTLDLHSN-QLKEYCVE--ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT  306 (582)
Q Consensus       239 ~~~i------~~l~-~~l~~~~--~L~~L~l~~~-~~~~~~~~--~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~  306 (582)
                      ...+      ..++ ..+..++  .++.+++.++ .+......  ....+++.++++++.+..++..+..+ +|++|+++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~  312 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV  312 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence            2111      1111 1122222  2344444443 22221111  11234666666666666666666666 67777777


Q ss_pred             CCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEE
Q 007984          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD  386 (582)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~  386 (582)
                      +|.+..++..                                      ....++.+++.++.+...... ..+++|++|+
T Consensus       313 ~n~~~~l~~~--------------------------------------~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~  353 (570)
T 2z63_A          313 NCKFGQFPTL--------------------------------------KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD  353 (570)
T ss_dssp             SCBCSSCCBC--------------------------------------BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred             cCcccccCcc--------------------------------------cccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence            6665433211                                      123456666666655433222 5578888888


Q ss_pred             cCCCcCCcC---CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCC-ccccCCCCCcEEeCCCCc
Q 007984          387 LSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       387 l~~~~l~~l---~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~  462 (582)
                      +++|.++.+   +..+..+++|++|++++|.+.+++.. +..+++|++|++++|.+..... ..+..+++|++|++++|.
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred             CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence            888887764   45677888888888888888776655 7788888888888888877644 457788888888888888


Q ss_pred             CCCCCCCCCCCCccchhhhh-ccccc--cCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984          463 ASLPENPPFSSLPHLQELYL-RMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE  538 (582)
Q Consensus       463 l~~~~~~~~~~~~~L~~L~l-~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~  538 (582)
                      +.+..+..+.++++|++|++ .+.+.  .++..+..+++|++|++++|+++.+ |..+.++++|++|++++|+++++++.
T Consensus       433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            88777778888888888888 44443  4677788999999999999999977 77899999999999999999999988


Q ss_pred             ccccccccceeeccCCCCCc
Q 007984          539 LGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       539 ~~~~~~~L~~L~l~~~~~~~  558 (582)
                      .+..+++|+.|++++|++..
T Consensus       513 ~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhhcccCCcEEEecCCcccC
Confidence            77778999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.8e-44  Score=375.53  Aligned_cols=483  Identities=19%  Similarity=0.247  Sum_probs=390.4

Q ss_pred             HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccc-h
Q 007984            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-A   85 (582)
Q Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~-~   85 (582)
                      |+...+.|++++.++.+|..+               .+++++|+++++.++.+ +..|..+++|++|++++|.+..++ .
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~---------------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGL---------------TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCC---------------CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             CCCCceEECCCCccccccccC---------------CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            445667899999999999876               35799999999999977 468999999999999999999775 5


Q ss_pred             hhhCCCCCcEEecCCCcCccCChh-hhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCc-CCCCc-cccccCC
Q 007984           86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCS  160 (582)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~-~~~i~-~~l~~~~  160 (582)
                      +|..+++|++|++++|.+..++.. +..+++|++|++++|.+..  .+..+.++++|++|++++|. +..++ ..+..++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            899999999999999999988765 8999999999999999984  46688999999999999998 56665 4689999


Q ss_pred             CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh-cCCCCccEEeCCCCcCccCC----cCCcCCCCCcEE
Q 007984          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEF  235 (582)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L  235 (582)
                      +|++|++++|+++...+..++.+++|++|+++++.+..++..+ ..+++|+.|++++|.+...+    .....+++|+.|
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            9999999999999887777999999999999999988777654 56899999999999988642    223557889999


Q ss_pred             EcCCCcCc-----ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCC
Q 007984          236 YMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL  310 (582)
Q Consensus       236 ~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~  310 (582)
                      +++++.+.     .++..+..+++|+.+++++|.+..+.....               .....+..+++++.+.+.++.+
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~i  293 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------SESDVVSELGKVETVTIRRLHI  293 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------CTTTCCCCCTTCCEEEEESCBC
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------cchhhhhhhccccccccccccc
Confidence            99998876     233445667888888888887655322100               0112345677788888887765


Q ss_pred             ccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhh-ccCCccEEEcCC
Q 007984          311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSR  389 (582)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~  389 (582)
                      .....  + ...                           .........++.+++.++.+..+|..++ .+++|++|++++
T Consensus       294 ~~~~~--~-~~l---------------------------~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~  343 (549)
T 2z81_A          294 PQFYL--F-YDL---------------------------STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE  343 (549)
T ss_dssp             SCGGG--S-CCC---------------------------CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred             chhhh--c-ccc---------------------------hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence            33210  0 000                           0011123467899999999999998885 599999999999


Q ss_pred             CcCCc-CC---ccccCCCCCCEEEcccCcCCCCCh--HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcC
Q 007984          390 NSIQE-LP---PELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (582)
Q Consensus       390 ~~l~~-l~---~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l  463 (582)
                      |.+.. ++   ..++.+++|++|++++|.+++++.  ..+..+++|++|++++|+++.++.. +..+++|++|++++|.+
T Consensus       344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCC
T ss_pred             CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCc
Confidence            99886 32   347889999999999999998754  5688999999999999999988764 78899999999999998


Q ss_pred             CCCCCCCCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCccccc
Q 007984          464 SLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLL  542 (582)
Q Consensus       464 ~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~  542 (582)
                      +.+....   .++|++|++ .+.+...+   ..+++|++|++++|+++.+|. ...+++|++|++++|+++++++..+..
T Consensus       423 ~~l~~~~---~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  495 (549)
T 2z81_A          423 RVVKTCI---PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR  495 (549)
T ss_dssp             SCCCTTS---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred             ccccchh---cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence            8765432   368999999 55555543   578999999999999999986 467999999999999999999887777


Q ss_pred             ccccceeeccCCCCCc
Q 007984          543 EPSLQALRLDGNPLRS  558 (582)
Q Consensus       543 ~~~L~~L~l~~~~~~~  558 (582)
                      +++|+.|++++|++..
T Consensus       496 l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          496 LTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             CTTCCEEECCSSCBCC
T ss_pred             CcccCEEEecCCCccC
Confidence            7999999999999753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-44  Score=387.88  Aligned_cols=485  Identities=23%  Similarity=0.266  Sum_probs=395.0

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCC-ccc-chhhh
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKL-SEL-PAAIG   88 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~-~~l-~~~~~   88 (582)
                      +..+++++.++.+|. +               .+++++|++++|.++.+ +..|..+++|++|++++|.. ..+ +.+|.
T Consensus         7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~   70 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR   70 (844)
T ss_dssp             EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred             eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence            478999999999998 4               57899999999999977 56899999999999999954 456 67899


Q ss_pred             CCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCCcCCc-CCcc--cccCCCCCeEEcCCCcCCCCc--cccccCCCC
Q 007984           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM  162 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L  162 (582)
                      ++++|++|+|++|.+..+ |..+.++++|++|++++|.+.. ++..  +.++++|++|++++|.+..++  ..++.+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            999999999999999866 7789999999999999999885 4443  889999999999999998653  568999999


Q ss_pred             cEEEccCCcccccchhhhccc--ccCcEEEccCCccCc-cchhhcCCCC------ccEEeCCCCcCcc-CCcC-------
Q 007984          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS-------  225 (582)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~~-~~~~-------  225 (582)
                      ++|++++|.++.+....+..+  ++|+.|++++|.+.. .+..+..+++      |+.|++++|.+.. .+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            999999999988877778777  899999999998854 3444444443      9999999986541 1111       


Q ss_pred             -----------------------------CcC--CCCCcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchhhh
Q 007984          226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (582)
Q Consensus       226 -----------------------------l~~--~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~  273 (582)
                                                   +..  +++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                         111  36899999999998855 5678889999999999999987765433


Q ss_pred             --cccccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHh
Q 007984          274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (582)
Q Consensus       274 --~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (582)
                        ..+|++|++++|.+..+ +..+..+++|++|++++|.+..+....+.                               
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-------------------------------  359 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK-------------------------------  359 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC-------------------------------
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc-------------------------------
Confidence              34599999999998885 55688999999999999988766543332                               


Q ss_pred             hhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChH-HhhCCCCC
Q 007984          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSL  429 (582)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L  429 (582)
                          ....++.+++++|.+..++.    +++|+++++++|.++.+|..   ..+++.|++++|.++++... .+..+++|
T Consensus       360 ----~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          360 ----FLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             ----SCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             ----CCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence                23578999999999887665    78899999999999988754   46799999999999887543 45689999


Q ss_pred             CEeeCCCCCCccCCCc-cccCCCCCcEEeCCCCcCCC-----CCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCE
Q 007984          430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRI  501 (582)
Q Consensus       430 ~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~  501 (582)
                      +.|++++|.++.+... .+..+++|+.|++++|.++.     ..+..|.++++|+.|++ .+.+..++. .+..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            9999999999876543 35678999999999998873     33456889999999999 666666655 4788999999


Q ss_pred             EecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       502 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      |++++|+++.+|..... ++|++|++++|+++++++..+   ++|+.+++++|++..
T Consensus       509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred             eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence            99999999988754323 899999999999998877543   589999999998753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=359.04  Aligned_cols=447  Identities=21%  Similarity=0.247  Sum_probs=288.3

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l-~~~~~~   89 (582)
                      +++|++++.++.+|..+               .+++++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|..
T Consensus         3 ~~l~ls~n~l~~ip~~~---------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   67 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL---------------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF   67 (520)
T ss_dssp             CEEECTTSCCSSCCCSC---------------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred             ceEecCCCCcccccccc---------------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence            46777777777777654               246777777777776554 4667777777777777777655 456666


Q ss_pred             CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCcCCCCccccccCCCC--cEE
Q 007984           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L--~~L  165 (582)
                      +++|++|++++|.+..+|..  .+++|++|++++|.+..  +|..++++++|++|++++|.+..  ..+..+++|  ++|
T Consensus        68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence            77777777777766666544  56666666666666653  34455556666666665555543  234444444  555


Q ss_pred             EccCCcc--cccchhhhcccccCcEEEccCCccCccchhhcCCC-CccEEeCCCCcCcc-C-CcCCcCCCCCcEEEcCCC
Q 007984          166 DVEGNKL--TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS-RLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       166 ~l~~~~i--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~  240 (582)
                      ++++|.+  ...                       .+..+..+. ....+++++|.+.. + ...+..+++|+.+++++|
T Consensus       144 ~l~~n~l~~~~~-----------------------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  200 (520)
T 2z7x_B          144 LLVLGETYGEKE-----------------------DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV  200 (520)
T ss_dssp             EEEECTTTTSSC-----------------------CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred             Eeeccccccccc-----------------------ccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence            5555544  222                       222332222 12234555554432 1 234555666666666666


Q ss_pred             c-------CcccchhhhccCCCcEEEcccCcccccch-----hhhcccccEEEccCCCCC-CCCccc-----cCCCCCCe
Q 007984          241 A-------LSALPAELGKLSKLGTLDLHSNQLKEYCV-----EACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRK  302 (582)
Q Consensus       241 ~-------i~~l~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~~~l~-~~~~~l-----~~~~~L~~  302 (582)
                      .       +......+..+++|++|+++++.+.....     .....+++++++++|.+. .+|..+     ..+++|+.
T Consensus       201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~  280 (520)
T 2z7x_B          201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI  280 (520)
T ss_dssp             CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred             ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence            4       33222356677778888877776654222     112235778888777776 466665     77888888


Q ss_pred             EEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCc
Q 007984          303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI  382 (582)
Q Consensus       303 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L  382 (582)
                      ++++++.+ .++...        .                      ..  ......++.+++.++.+..++. ...+++|
T Consensus       281 l~l~~n~~-~~p~~~--------~----------------------~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L  326 (520)
T 2z7x_B          281 HQVVSDVF-GFPQSY--------I----------------------YE--IFSNMNIKNFTVSGTRMVHMLC-PSKISPF  326 (520)
T ss_dssp             EEEEECCC-CSCTHH--------H----------------------HH--HHHTCCCSEEEEESSCCCCCCC-CSSCCCC
T ss_pred             ccccccce-ecchhh--------h----------------------hc--ccccCceeEEEcCCCccccccc-hhhCCcc
Confidence            88888765 222000        0                      00  0011346677777776654431 1356778


Q ss_pred             cEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCCh--HHhhCCCCCCEeeCCCCCCcc-CCCccccCCCCCcEEeC
Q 007984          383 TKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDL  458 (582)
Q Consensus       383 ~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l  458 (582)
                      ++|++++|.++. +|..+..+++|++|++++|.+++++.  ..+..+++|++|++++|.+.. ++...+..+++|++|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            888888887776 56667777888888888887776432  456778888888888888777 66555777778888888


Q ss_pred             CCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984          459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  538 (582)
Q Consensus       459 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~  538 (582)
                      ++|.+++..+                      ..+  .++|+.|++++|+++.+|..+.++++|++|++++|+++++|..
T Consensus       407 s~N~l~~~~~----------------------~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          407 SSNILTDTIF----------------------RCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             CSSCCCGGGG----------------------GSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCCCCcchh----------------------hhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence            8776653211                      111  1689999999999999998888999999999999999999998


Q ss_pred             ccccccccceeeccCCCCCc
Q 007984          539 LGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       539 ~~~~~~~L~~L~l~~~~~~~  558 (582)
                      .+..+++|++|++++|++..
T Consensus       463 ~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          463 IFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhccCCcccEEECcCCCCcc
Confidence            77777999999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-42  Score=363.66  Aligned_cols=474  Identities=23%  Similarity=0.283  Sum_probs=372.1

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccc-hh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~-~~   86 (582)
                      +.++.|+++++.++.++...+.            .+++|++|++++|.++.++ ..|.++++|++|++++|.++.++ ..
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~------------~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFF------------SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTT------------TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccEEEccCCccCccChhHhh------------CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            4688999999999988765443            3889999999999999885 57999999999999999999775 68


Q ss_pred             hhCCCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCcCCCCc-cccccCCCC
Q 007984           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L  162 (582)
                      |..+++|++|++++|.+..++. .+.++++|++|++++|.+..  +|..+.++++|++|++++|.+..++ ..+..+++|
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            9999999999999999998865 58899999999999999985  6889999999999999999998664 557777888


Q ss_pred             ----cEEEccCCcccccchhhhcccccCcEEEccCCcc--CccchhhcCCCCccEEeCCCCcCc------cCC-cCCcCC
Q 007984          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL--NGMPETIGSLSRLIRLDLHQNRIL------SIP-SSISGC  229 (582)
Q Consensus       163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~------~~~-~~l~~~  229 (582)
                          +.|++++|.+..+.+..+... +|+.+++++|..  ..++..+..++.++..++....+.      .++ ..+..+
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l  254 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  254 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred             chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence                899999999999988877766 899999998744  234556666676666554432211      111 122222


Q ss_pred             CC--CcEEEcCCC-cCc-ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEc
Q 007984          230 CS--LAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL  305 (582)
Q Consensus       230 ~~--L~~L~l~~~-~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l  305 (582)
                      .+  ++.+++.++ .+. ..+..+..+++|++|+++++.+..++......+++.+++++|.+..++.  ..+++|+++++
T Consensus       255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l  332 (570)
T 2z63_A          255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF  332 (570)
T ss_dssp             GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred             cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeC
Confidence            22  344555544 333 4456677777888888887777766655444467888888887776655  46777888888


Q ss_pred             cCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccC---ChhhhccCCc
Q 007984          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEI  382 (582)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i---~~~~~~~~~L  382 (582)
                      ++|.+......                                     .....++.++++++.+..+   +..+..+++|
T Consensus       333 ~~n~~~~~~~~-------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  375 (570)
T 2z63_A          333 TSNKGGNAFSE-------------------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL  375 (570)
T ss_dssp             ESCBSCCBCCC-------------------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred             cCCcccccccc-------------------------------------ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence            77765322100                                     1234677888888777654   5677788999


Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCCh-HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  461 (582)
                      ++|++++|.+..++..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus       376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            99999999998887778899999999999998877644 45788999999999999998888778899999999999999


Q ss_pred             cCC-CCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCc
Q 007984          462 IAS-LPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA  534 (582)
Q Consensus       462 ~l~-~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~  534 (582)
                      .+. +..+..+..+++|++|++ .+.+... +..+..+++|+.|++++|+++.++ ..+.++++|++|++++|+++.
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            886 345677899999999999 5566655 667889999999999999999876 458999999999999998884

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-40  Score=354.78  Aligned_cols=507  Identities=22%  Similarity=0.250  Sum_probs=387.4

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccch-hhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~-~~~~   89 (582)
                      .+.+|++..++.||.++               .+++++|+|++|.|+.++ .+|.++++|++|+|++|.++.++. +|.+
T Consensus        34 ~~~~c~~~~l~~vP~~l---------------p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             TEEECTTSCCSSCCSSS---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCCCC---------------CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence            46789999999999877               568999999999999997 479999999999999999998855 7999


Q ss_pred             CCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCC--CccccccCCCCcEE
Q 007984           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L  165 (582)
                      +++|++|+|++|.+..++. .|.++++|++|++++|.++.++. .++++++|++|++++|.+..  ++..+..+++|++|
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            9999999999999998875 58999999999999999998875 58899999999999999874  56778999999999


Q ss_pred             EccCCcccccchhhhcccccCc----EEEccCCccCccchhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEE----
Q 007984          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEF----  235 (582)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L----  235 (582)
                      ++++|+++.+....+..+.+++    .++++.+.+..++........++.+++.++...  ..+..+..+..++..    
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            9999999988877777766544    678888888766654444555666776665432  111122223333322    


Q ss_pred             --------------------------EcCCCcCc----ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCC
Q 007984          236 --------------------------YMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (582)
Q Consensus       236 --------------------------~l~~~~i~----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~  285 (582)
                                                .+..+...    .....+....+++.+.+.++.+..+........++.+++.++
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC  338 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence                                      22221111    222334455667777777766666555555555777777777


Q ss_pred             CCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEec
Q 007984          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (582)
Q Consensus       286 ~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (582)
                      .+..++.  ..+..++.+.+..+.......                                     ......++.+++.
T Consensus       339 ~~~~~~~--~~l~~L~~l~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~ls  379 (635)
T 4g8a_A          339 KFGQFPT--LKLKSLKRLTFTSNKGGNAFS-------------------------------------EVDLPSLEFLDLS  379 (635)
T ss_dssp             EESSCCC--CBCTTCCEEEEESCCSCCBCC-------------------------------------CCBCTTCCEEECC
T ss_pred             cccCcCc--ccchhhhhcccccccCCCCcc-------------------------------------cccccccccchhh
Confidence            6655432  245566666666665432211                                     0112456788888


Q ss_pred             CCCCc---cCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCcc
Q 007984          366 GMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ  441 (582)
Q Consensus       366 ~~~~~---~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~  441 (582)
                      .+.+.   ..+.......+++.+++..+....++..+..+++|+.+++..+.... .....+..+++++.+++++|.+..
T Consensus       380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~  459 (635)
T 4g8a_A          380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  459 (635)
T ss_dssp             SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred             ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence            87765   34566667888999999998887777778889999999998875544 344457889999999999999998


Q ss_pred             CCCccccCCCCCcEEeCCCCcC-CCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccc-hhhc
Q 007984          442 VPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFK  517 (582)
Q Consensus       442 ~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~  517 (582)
                      +....+..+++|+.|++++|.. ....+..|..+++|++|++ .+.+..+ +..+.++++|++|++++|+++.++ ..|.
T Consensus       460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  539 (635)
T 4g8a_A          460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  539 (635)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred             ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence            8888889999999999999864 4456677899999999999 6666655 557889999999999999999885 4589


Q ss_pred             CCCCCCEEeCCCCcCCcCCCcccccc-cccceeeccCCCCCcchHHHhccchHHHHHHHHhc
Q 007984          518 NLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK  578 (582)
Q Consensus       518 ~l~~L~~L~l~~n~l~~l~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (582)
                      ++++|++|++++|+|+++++..+..+ ++|+.|++++|++.-      +........|++++
T Consensus       540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C------~C~~~~~~~wl~~~  595 (635)
T 4g8a_A          540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC------TCEHQSFLQWIKDQ  595 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC------SGGGHHHHHHHHHT
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc------cCCcHHHHHHHHhC
Confidence            99999999999999999888766544 789999999999973      66667777788765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=368.16  Aligned_cols=478  Identities=20%  Similarity=0.229  Sum_probs=341.6

Q ss_pred             cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCc-CccC-ChhhhccCCccEEEccCC
Q 007984           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSN  124 (582)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~  124 (582)
                      +..+.+++.++.+|.   -.+++++|+|++|.++.+ +..|..+++|++|++++|. +..+ +..+.++++|++|++++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            578889999999987   457999999999999976 6689999999999999994 4466 677999999999999999


Q ss_pred             cCCcC-CcccccCCCCCeEEcCCCcCCC-Cccc--cccCCCCcEEEccCCcccccch-hhhcccccCcEEEccCCccCcc
Q 007984          125 QLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGM  199 (582)
Q Consensus       125 ~~~~l-~~~~~~~~~L~~L~l~~~~~~~-i~~~--l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~  199 (582)
                      .+..+ |..+.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..+.. ..++++++|++|++++|.+..+
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            99866 7789999999999999999985 4444  8999999999999999987654 4689999999999999998653


Q ss_pred             -chhhcCC--CCccEEeCCCCcCcc-CCcCCcCCCC------CcEEEcCCCcCc-ccchhhhc---cCCCcEEEcccCc-
Q 007984          200 -PETIGSL--SRLIRLDLHQNRILS-IPSSISGCCS------LAEFYMGNNALS-ALPAELGK---LSKLGTLDLHSNQ-  264 (582)
Q Consensus       200 -~~~l~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~i~-~l~~~l~~---~~~L~~L~l~~~~-  264 (582)
                       +..+..+  ++|+.|++++|.+.. .+..+..+.+      |+.|++++|.+. ..+..+..   .+.++.+.+..+. 
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence             4555555  899999999998874 4555555555      999999999776 33333322   2455566554221 


Q ss_pred             --------ccccchhh----hcccccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHh
Q 007984          265 --------LKEYCVEA----CQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS  331 (582)
Q Consensus       265 --------~~~~~~~~----~~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (582)
                              +.......    ...+++.+++++|.+..+ +..+..+++|++|++++|.+..+....+..           
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----------  312 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-----------  312 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-----------
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-----------
Confidence                    11111111    113466666666666553 334566666677777666665443222211           


Q ss_pred             cCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccC-ChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEE
Q 007984          332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLI  409 (582)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~  409 (582)
                                              ...++.+++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|+
T Consensus       313 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  368 (844)
T 3j0a_A          313 ------------------------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD  368 (844)
T ss_dssp             ------------------------CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred             ------------------------CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence                                    23455666666655544 3344445666666666666555443 355566666666


Q ss_pred             cccCcCCCCChH---------------HhhCCCCCCEeeCCCCCCccCCCc-cccCCCCCcEEeCCCCcCCCCCCC-CCC
Q 007984          410 LSRNKIKDWPDA---------------ILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASLPENP-PFS  472 (582)
Q Consensus       410 l~~~~l~~~~~~---------------~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~  472 (582)
                      +++|.++.+...               .-....+++.|++++|.+..+... .+..+++|+.|++++|.+++.... .+.
T Consensus       369 Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  448 (844)
T 3j0a_A          369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS  448 (844)
T ss_dssp             EETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred             CCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence            666655543210               001133455555555555544322 134789999999999999866443 466


Q ss_pred             CCccchhhhh-cccccc------CchhhhccCCCCEEecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCccccccc
Q 007984          473 SLPHLQELYL-RMQLRE------APTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEP  544 (582)
Q Consensus       473 ~~~~L~~L~l-~~~~~~------~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~  544 (582)
                      .+++|+.|++ .+.+..      .+..+..+++|+.|++++|.++.++. .|.++++|++|+|++|+++++|+..+.  +
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~  526 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A  526 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred             cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence            7899999999 554432      23457789999999999999998764 489999999999999999999987766  8


Q ss_pred             ccceeeccCCCCCcchHHHhc
Q 007984          545 SLQALRLDGNPLRSIRRTILD  565 (582)
Q Consensus       545 ~L~~L~l~~~~~~~~~~~~~~  565 (582)
                      +|+.|++++|.+..+.+..|.
T Consensus       527 ~L~~L~Ls~N~l~~~~~~~~~  547 (844)
T 3j0a_A          527 NLEILDISRNQLLAPNPDVFV  547 (844)
T ss_dssp             CCCEEEEEEECCCCCCSCCCS
T ss_pred             cccEEECCCCcCCCCChhHhC
Confidence            999999999999988877664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-41  Score=352.10  Aligned_cols=467  Identities=20%  Similarity=0.201  Sum_probs=346.7

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEc
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC  121 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l  121 (582)
                      |+...+.+.+++.++.+|..+.  ++|++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4455567888888999887654  7999999999999876 568899999999999999998764 56889999999999


Q ss_pred             cCCcCCcCCcc-cccCCCCCeEEcCCCcCCC--CccccccCCCCcEEEccCCc-ccccchhhhcccccCcEEEccCCccC
Q 007984          122 SSNQLKELPSS-LGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLN  197 (582)
Q Consensus       122 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (582)
                      ++|.+..++.. +.++++|++|++++|.+..  ++..+..+++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            99999877654 8889999999999998884  45678888999999998887 56666666777777888888777775


Q ss_pred             c-cchhhcCCCCccEEeCCCCcCccCCcCC-cCCCCCcEEEcCCCcCcccc----hhhhccCCCcEEEcccCcccccchh
Q 007984          198 G-MPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP----AELGKLSKLGTLDLHSNQLKEYCVE  271 (582)
Q Consensus       198 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~i~~l~----~~l~~~~~L~~L~l~~~~~~~~~~~  271 (582)
                      . .+..+..+++|+.|+++++.+..++..+ ..+++|++|++++|.+..++    .....+++|+.|+++++.+......
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            4 4566667777777777777665444332 34666666777666666431    1123345666666666655432211


Q ss_pred             hhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhh
Q 007984          272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (582)
Q Consensus       272 ~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (582)
                      .                 ++..+..+++++.+++++|.+..+.......                             ..
T Consensus       242 ~-----------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----------------------------~~  275 (549)
T 2z81_A          242 E-----------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSE-----------------------------SD  275 (549)
T ss_dssp             H-----------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCT-----------------------------TT
T ss_pred             H-----------------HHHHhhhhccccccccccccccccccccccc-----------------------------hh
Confidence            1                 1223455667777777777654432110000                             00


Q ss_pred             hhcccccccEEEecCCCCccC------ChhhhccCCccEEEcCCCcCCcCCccc-cCCCCCCEEEcccCcCCCCCh---H
Q 007984          352 ATRLSVTSKELSLEGMNLSAI------PSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPD---A  421 (582)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~~i------~~~~~~~~~L~~L~l~~~~l~~l~~~l-~~~~~L~~L~l~~~~l~~~~~---~  421 (582)
                      .......++.+.+.++.+...      +......++|+++++++|.+..+|..+ ..+++|++|++++|.+++..+   .
T Consensus       276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchh
Confidence            011224567777777765432      222334678999999999999999865 579999999999999887432   2


Q ss_pred             HhhCCCCCCEeeCCCCCCccCCC--ccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchhhhccCC
Q 007984          422 ILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQ  498 (582)
Q Consensus       422 ~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~  498 (582)
                      .++.+++|++|++++|+++.++.  ..+..+++|++|++++|.++.+ +..+..+++|++|++ .+.+..++..+  .++
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~  432 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQT  432 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTS--CTT
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccchh--cCC
Confidence            36789999999999999988753  4588999999999999999865 456888999999999 66666665543  369


Q ss_pred             CCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhcc
Q 007984          499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR  566 (582)
Q Consensus       499 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  566 (582)
                      |++|++++|++++++   .++++|++|++++|+++.+|..  ..+++|+.|++++|++..+++..|..
T Consensus       433 L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~  495 (549)
T 2z81_A          433 LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDR  495 (549)
T ss_dssp             CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred             ceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhc
Confidence            999999999999875   4789999999999999999984  34599999999999999998887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-40  Score=356.13  Aligned_cols=438  Identities=18%  Similarity=0.217  Sum_probs=266.7

Q ss_pred             cCccEEEcCCCCcc-chhHhhcCCCCCcEEEc-CCCCCccc-c-------------------------------------
Q 007984           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P-------------------------------------   84 (582)
Q Consensus        45 ~~l~~L~l~~~~i~-~~~~~~~~~~~L~~L~L-~~~~~~~l-~-------------------------------------   84 (582)
                      .+++.|+|+++.+. .+|..++++++|++|+| +++.+... +                                     
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57899999999988 77889999999999999 66643311 0                                     


Q ss_pred             ---hhh-----------hCCCCCcEEecCC--CcCccCChhhhccCCccEEEccCCcCCc------------------CC
Q 007984           85 ---AAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (582)
Q Consensus        85 ---~~~-----------~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------l~  130 (582)
                         ..+           .....++.+.+..  |.+..+|..+.++++|++|++++|.++.                  +|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence               000           1111233333332  4555678888888888888888888876                  77


Q ss_pred             cccc--cCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCc-ccc-cchhhhcccc-------cCcEEEccCCccCc
Q 007984          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASWT-------MLTELIASKNLLNG  198 (582)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~-------~L~~L~l~~~~~~~  198 (582)
                      ..++  ++++|+.|++++|.+. .+|..+..+++|++|++++|+ ++. ..+..++.++       +|++|++++|.+..
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~  562 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE  562 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence            7766  8888888888888754 677778888888888888887 664 2222244443       78888888887777


Q ss_pred             cch--hhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCC-CcEEEcccCcccccchhhhcc
Q 007984          199 MPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL  275 (582)
Q Consensus       199 ~~~--~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~  275 (582)
                      +|.  .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+..++.     
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-----  636 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN-----  636 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS-----
T ss_pred             cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch-----
Confidence            777  7777888888888888777777 777778888888888877777777777777 7777777777665443     


Q ss_pred             cccEEEccCCCCCCCCccccCCC--CCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhh
Q 007984          276 RLSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT  353 (582)
Q Consensus       276 ~L~~l~l~~~~l~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (582)
                                       .+...+  +|+.|++++|.+..........                              ...
T Consensus       637 -----------------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~------------------------------l~~  669 (876)
T 4ecn_A          637 -----------------IFNAKSVYVMGSVDFSYNKIGSEGRNISCS------------------------------MDD  669 (876)
T ss_dssp             -----------------CCCTTCSSCEEEEECCSSCTTTTSSSCSSC------------------------------TTT
T ss_pred             -----------------hhhccccCCCCEEECcCCcCCCccccchhh------------------------------hcc
Confidence                             222222  2555555555443211000000                              000


Q ss_pred             cccccccEEEecCCCCccCChhhh-ccCCccEEEcCCCcCCcCCccccC--------CCCCCEEEcccCcCCCCChHHh-
Q 007984          354 RLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKIKDWPDAIL-  423 (582)
Q Consensus       354 ~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~l~~~l~~--------~~~L~~L~l~~~~l~~~~~~~l-  423 (582)
                      ....+++.+++.+|.+..+|..++ .+++|+.|++++|.++.+|..+..        +++|++|++++|+++.++.... 
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence            001133444444444455555554 356666777776666666553322        2266666666666665554322 


Q ss_pred             hCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccc-cccCchhhhccCCCCEE
Q 007984          424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDILRLQQLRIL  502 (582)
Q Consensus       424 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L  502 (582)
                      ..+++|+.|++++|++..++. .+..+++|+.|++++|...       .          ++. ...+|..+..+++|+.|
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~l-------s----------~N~l~~~ip~~l~~L~~L~~L  811 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDA-------E----------GNRILRQWPTGITTCPSLIQL  811 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCT-------T----------CCBCCCCCCTTGGGCSSCCEE
T ss_pred             ccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCc-------c----------cccccccChHHHhcCCCCCEE
Confidence            256666666666666666543 3556666666666654300       0          011 12334455566667777


Q ss_pred             ecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCC
Q 007984          503 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP  555 (582)
Q Consensus       503 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~  555 (582)
                      ++++|.+..+|..+.  ++|++|+|++|++..+....+.....+..+.+.+++
T Consensus       812 ~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          812 QIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             ECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             ECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence            777776666665543  467777777776665544333222333344444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.4e-41  Score=356.80  Aligned_cols=157  Identities=29%  Similarity=0.415  Sum_probs=95.8

Q ss_pred             cCCccEEEcCCCcCCcCCcc-ccCCCCCCEEEcccCcCCCCChHHhhCCC-------CCCEeeCCCCCCccCCCccc-cC
Q 007984          379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS-------SLSCLKLDNNPLRQVPSDGF-KD  449 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~l~-------~L~~L~l~~~~l~~~~~~~~-~~  449 (582)
                      .++|++|++++|.++.+|.. +..+++|++|++++|.++.++...+....       +|++|++++|.++.++...+ ..
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            44556666666655555543 23455566666666655554443333222       55555555555555443311 25


Q ss_pred             CCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecC------CCcCC-ccchhhcCCCCC
Q 007984          450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLS------QNSLQ-SIPEGFKNLTSL  522 (582)
Q Consensus       450 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~------~~~l~-~l~~~~~~l~~L  522 (582)
                      +++|+.|++++|.+++                       +|..+..+++|+.|+++      +|.+. .+|..+.++++|
T Consensus       512 l~~L~~L~Ls~N~l~~-----------------------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSK-----------------------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             CTTCCEEECCSSCCSS-----------------------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CCCcCEEECCCCCCCC-----------------------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence            5555555555555543                       44556667777777774      44444 667778888888


Q ss_pred             CEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchH
Q 007984          523 TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRR  561 (582)
Q Consensus       523 ~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~  561 (582)
                      ++|++++|+++.+|..+.   ++|+.|++++|++..++.
T Consensus       569 ~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          569 TQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEEC
T ss_pred             CEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccH
Confidence            888888888887877533   688888888888777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.9e-41  Score=348.27  Aligned_cols=424  Identities=22%  Similarity=0.243  Sum_probs=333.5

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccchhh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI   87 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~~~~   87 (582)
                      +.++.|+++++.+..++...+..            +++|++|++++|.++.+ |+.|..+++|++|++++|.++.+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence            67899999999999988766554            78899999999999987 67899999999999999999988777 


Q ss_pred             hCCCCCcEEecCCCcCcc--CChhhhccCCccEEEccCCcCCcCCcccccCCCC--CeEEcCCCcC--C-CCccccccCC
Q 007984           88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS  160 (582)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~-~i~~~l~~~~  160 (582)
                       .+++|++|++++|.+..  +|..++.+++|++|++++|.+..  ..+..+++|  +.|++++|.+  . ..+..+..+.
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence             89999999999999986  57889999999999999999875  356778888  9999999988  3 4555555554


Q ss_pred             -CCcEEEccCCccc-ccchhhhcccccCcEEEccCCc-------cCccchhhcCCCCccEEeCCCCcCcc-----CCcCC
Q 007984          161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI  226 (582)
Q Consensus       161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l  226 (582)
                       +...++++++.+. .+....+..+++|+.+++++|.       +......+..+++|+.|+++++.+..     ++...
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence             2335666777654 3455557788999999998885       33323367778899999998887652     11111


Q ss_pred             cCCCCCcEEEcCCCcCc-ccchhh-----hccCCCcEEEcccCcccccchhhh-----cccccEEEccCCCCCCCCcccc
Q 007984          227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEAC-----QLRLSVLDLSNNSLSGLPPEIG  295 (582)
Q Consensus       227 ~~~~~L~~L~l~~~~i~-~l~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~-----~~~L~~l~l~~~~l~~~~~~l~  295 (582)
                       .+++|++|++++|.+. .+|..+     ..+++|+.++++++.+ .++....     ..+++.+++++|.+...+. ..
T Consensus       245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  321 (520)
T 2z7x_B          245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS  321 (520)
T ss_dssp             -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred             -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence             2458889999988888 777777     7888888888888887 5542211     1347888888887765431 25


Q ss_pred             CCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChh
Q 007984          296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE  375 (582)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~  375 (582)
                      .+++|++|++++|.+..                                                          .+|..
T Consensus       322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~  343 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN  343 (520)
T ss_dssp             SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred             hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence            67777777777776532                                                          24455


Q ss_pred             hhccCCccEEEcCCCcCCc---CCccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCC
Q 007984          376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (582)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  451 (582)
                      +..+++|++|++++|.++.   +|..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++.....+.  +
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            6668899999999999986   44568899999999999999998 6666678899999999999998765433332  7


Q ss_pred             CCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007984          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN  530 (582)
Q Consensus       452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n  530 (582)
                      +|+.|++++|.++.+                       +..+..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus       422 ~L~~L~Ls~N~l~~i-----------------------p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          422 RIKVLDLHSNKIKSI-----------------------PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             TCCEEECCSSCCCCC-----------------------CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCccccc-----------------------chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            999999999987633                       34455789999999999999999876 889999999999999


Q ss_pred             cCCc
Q 007984          531 NISA  534 (582)
Q Consensus       531 ~l~~  534 (582)
                      +++.
T Consensus       479 ~~~c  482 (520)
T 2z7x_B          479 PWDC  482 (520)
T ss_dssp             CBCC
T ss_pred             CCcc
Confidence            8874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-40  Score=350.63  Aligned_cols=412  Identities=19%  Similarity=0.253  Sum_probs=295.2

Q ss_pred             cCccEEEcCCCCcc-chhHhhcCCCCCcEEEcCCCCCc-------------ccchh---------------------hh-
Q 007984           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAA---------------------IG-   88 (582)
Q Consensus        45 ~~l~~L~l~~~~i~-~~~~~~~~~~~L~~L~L~~~~~~-------------~l~~~---------------------~~-   88 (582)
                      .+++.|+|+++.+. .+|..++++++|++|+|++|.+.             .+|..                     +. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            47999999999988 77889999999999999999652             11110                     00 


Q ss_pred             ------------------CCCCCcEEecC--CCcCccCChhhhccCCccEEEccCCcCCc------------------CC
Q 007984           89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (582)
Q Consensus        89 ------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------l~  130 (582)
                                        ....++.+.+.  .|.++.+|..++++++|++|++++|.++.                  +|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                              01112222222  34555677778888888888888888776                  77


Q ss_pred             cccc--cCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCc-ccc-cchhhhccc------ccCcEEEccCCccCcc
Q 007984          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------TMLTELIASKNLLNGM  199 (582)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~~~~~~~  199 (582)
                      ..++  ++++|++|++++|.+. .+|..+..+++|++|++++|+ ++. ..+..++.+      ++|++|++++|.+..+
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i  320 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF  320 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence            7777  8888888888888754 677778888888888888887 664 222234444      7788888888877777


Q ss_pred             ch--hhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCCcCcccchhhhccCC-CcEEEcccCcccccchhhhcc
Q 007984          200 PE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL  275 (582)
Q Consensus       200 ~~--~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~  275 (582)
                      |.  .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.++.++......
T Consensus       321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~  399 (636)
T 4eco_A          321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK  399 (636)
T ss_dssp             CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred             CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence            77  7777788888888888777 677 777777888888888877777777777777 777777777776554432221


Q ss_pred             ---cccEEEccCCCCCC-CCcccc-------CCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccc
Q 007984          276 ---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (582)
Q Consensus       276 ---~L~~l~l~~~~l~~-~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (582)
                         +|+.+++++|.+.+ .|..+.       .+++                                             
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~---------------------------------------------  434 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN---------------------------------------------  434 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC---------------------------------------------
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCCC---------------------------------------------
Confidence               35555555555544 222233       3334                                             


Q ss_pred             hhhHHhhhhcccccccEEEecCCCCccCChhhhc-cCCccEEEcCCCcCCcCCccccC--------CCCCCEEEcccCcC
Q 007984          345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKI  415 (582)
Q Consensus       345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~-~~~L~~L~l~~~~l~~l~~~l~~--------~~~L~~L~l~~~~l  415 (582)
                                    ++.+++.+|.+..+|..++. +++|++|++++|.++.+|.....        +++|++|++++|.+
T Consensus       435 --------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          435 --------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             --------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             --------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence                          45555555555667766654 78999999999999988764322        23899999999999


Q ss_pred             CCCChHHh-hCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccc-cccCchhh
Q 007984          416 KDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDI  493 (582)
Q Consensus       416 ~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~  493 (582)
                      +.++...+ ..+++|++|++++|+++.++. .+..+++|+.|++++|...+                 .+. ...++..+
T Consensus       501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls-----------------~N~l~~~~p~~l  562 (636)
T 4eco_A          501 TKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQ-----------------GNRTLREWPEGI  562 (636)
T ss_dssp             CBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTT-----------------CCBCCCCCCTTG
T ss_pred             CccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccc-----------------cCcccccChHHH
Confidence            98776543 389999999999999999655 47889999999997764100                 011 12345667


Q ss_pred             hccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCC
Q 007984          494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  536 (582)
Q Consensus       494 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~  536 (582)
                      ..+++|++|++++|.++.+|..+.  ++|++|++++|++..++
T Consensus       563 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             GGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             hcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence            788999999999999999987754  89999999999887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-40  Score=352.98  Aligned_cols=435  Identities=23%  Similarity=0.318  Sum_probs=290.7

Q ss_pred             CCCcEEEcCCCCCc-ccchhhhCCCCCcEEec-CCCcCccC-Chhhhcc----C-----CccEE------Ec-cCCcCC-
Q 007984           68 PLLTVLNVSHNKLS-ELPAAIGELHMLKSLDV-SFNSIMKI-PDEIGSA----T-----ALVKF------DC-SSNQLK-  127 (582)
Q Consensus        68 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l-~~~~~~~l-~~~~~~~----~-----~L~~L------~l-~~~~~~-  127 (582)
                      .+++.|+|+++.+. .+|..++++++|++|+| ++|.+... +......    .     .++..      .. ....+. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999998 77889999999999999 77755421 1000000    0     00000      00 000000 


Q ss_pred             -----------cCCcccccCCCCCeEEcCC--CcCCCCccccccCCCCcEEEccCCcccc------------------cc
Q 007984          128 -----------ELPSSLGRCLNLSDFKASN--NCITSLPEDLADCSKMSKLDVEGNKLTV------------------LS  176 (582)
Q Consensus       128 -----------~l~~~~~~~~~L~~L~l~~--~~~~~i~~~l~~~~~L~~L~l~~~~i~~------------------~~  176 (582)
                                 ..+........++.+.+..  |.+..+|..+..+++|+.|++++|+++.                  ++
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                       0000111222333333333  4455567777777777777777777766                  44


Q ss_pred             hhhhc--ccccCcEEEccCCcc-CccchhhcCCCCccEEeCCCCc-Ccc--CCcC-------CcCCCCCcEEEcCCCcCc
Q 007984          177 NNLIA--SWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNR-ILS--IPSS-------ISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       177 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~--~~~~-------l~~~~~L~~L~l~~~~i~  243 (582)
                      .. ++  .+++|++|++++|.+ ..+|..+..+++|+.|++++|. +..  +|..       +..+++|++|++++|.+.
T Consensus       483 ~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            43 44  777777777777764 4566777777777777777776 653  4443       334458888888888888


Q ss_pred             ccch--hhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCC-CCeEEccCCCCccccccccCC
Q 007984          244 ALPA--ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNG  320 (582)
Q Consensus       244 ~l~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~  320 (582)
                      .+|.  .+..+++|++|++++|.+..++......+|+.|++++|.+..+|..+..+++ |++|++++|.+..++      
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp------  635 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP------  635 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC------
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc------
Confidence            7777  7888888888888888877666322334478888888888778878888888 999999998875332      


Q ss_pred             CcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhcc--CCccEEEcCCCcCCcCCc-
Q 007984          321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPP-  397 (582)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~--~~L~~L~l~~~~l~~l~~-  397 (582)
                                                                           ..+...  ++|+.|++++|.+...+. 
T Consensus       636 -----------------------------------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          636 -----------------------------------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             -----------------------------------------------------SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             -----------------------------------------------------hhhhccccCCCCEEECcCCcCCCcccc
Confidence                                                                 222222  336777777776654221 


Q ss_pred             ---ccc--CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC-------CCCcEEeCCCCcCCC
Q 007984          398 ---ELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYNIASL  465 (582)
Q Consensus       398 ---~l~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~  465 (582)
                         .+.  .+++|+.|++++|.++.++...+..+++|+.|++++|.+..++...+...       ++|+.|++++|.++.
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~  742 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS  742 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence               111  33467777777777777776666677777777777777776665544322       377777777777774


Q ss_pred             CCCCCCC--CCccchhhhh-ccccccCchhhhccCCCCEEecCC------CcCC-ccchhhcCCCCCCEEeCCCCcCCcC
Q 007984          466 PENPPFS--SLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNISAL  535 (582)
Q Consensus       466 ~~~~~~~--~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~------~~l~-~l~~~~~~l~~L~~L~l~~n~l~~l  535 (582)
                      +. ..+.  .+++|+.|++ .+.+..++..+..+++|+.|++++      |.+. .+|..+.++++|++|+|++|+++.+
T Consensus       743 lp-~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          743 LS-DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             CC-GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             ch-HHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence            43 3343  6777777777 556666777788899999999976      5555 6788899999999999999999999


Q ss_pred             CCcccccccccceeeccCCCCCcchHHHhcc
Q 007984          536 PPELGLLEPSLQALRLDGNPLRSIRRTILDR  566 (582)
Q Consensus       536 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  566 (582)
                      |..+.   ++|+.|++++|++..++...|..
T Consensus       822 p~~l~---~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          822 DEKLT---PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             CSCCC---SSSCEEECCSCTTCEEECGGGHH
T ss_pred             CHhhc---CCCCEEECCCCCCCccChHHccc
Confidence            98743   79999999999999888666544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-39  Score=339.79  Aligned_cols=449  Identities=21%  Similarity=0.242  Sum_probs=302.4

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccc-hhhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEc
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDC  121 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l  121 (582)
                      |...++++++++.++.+|..+.  ++|++|++++|.+..++ ..|..+++|++|++++|.+..+ |..+.++++|++|++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            4455778888888887776553  67888888888887665 4777888888888888887765 556777888888888


Q ss_pred             cCCcCCcCCcccccCCCCCeEEcCCCcCCCCc--cccccCCCCcEEEccCCcccccchhhhcccccC--cEEEccCCcc-
Q 007984          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL-  196 (582)
Q Consensus       122 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L--~~L~l~~~~~-  196 (582)
                      ++|.++.+|..  .+++|++|++++|.+..++  ..+..+++|++|++++|++....   +..+++|  ++|++++|.+ 
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence            88888877765  6788888888888877654  57888888888888888776532   5555555  8888888776 


Q ss_pred             -Cc-cchhhcCCC-CccEEeCCCCcCcc-C-CcCCcCCCCCcEEEcCCCcC-----cccchhhhccCCCcEEEcccCccc
Q 007984          197 -NG-MPETIGSLS-RLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNAL-----SALPAELGKLSKLGTLDLHSNQLK  266 (582)
Q Consensus       197 -~~-~~~~l~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~i-----~~l~~~l~~~~~L~~L~l~~~~~~  266 (582)
                       .. .+..+..+. ..-.+++++|.+.. + ...+..+++|+.+++++|..     ......+..+++|+.+++.++.+.
T Consensus       183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence             32 334444333 12245666666553 2 22456678888888888752     233445677888888888877665


Q ss_pred             cc-----chhhhcccccEEEccCCCCC-CCCccc-----cCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCC
Q 007984          267 EY-----CVEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE  335 (582)
Q Consensus       267 ~~-----~~~~~~~~L~~l~l~~~~l~-~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (582)
                      ..     .......+++++++++|.+. .+|..+     ..++.|+.+++..+.+ .++.        ...         
T Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~--------~~~---------  324 (562)
T 3a79_B          263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSK--------EAL---------  324 (562)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCH--------HHH---------
T ss_pred             HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecCh--------hhh---------
Confidence            32     22223346899999998887 466654     4444444444444433 1110        000         


Q ss_pred             CCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCc
Q 007984          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNK  414 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~  414 (582)
                                   ..  ......++.+++.++.+..++. ...+++|++|++++|.++. +|..+..+++|++|++++|+
T Consensus       325 -------------~~--~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          325 -------------YS--VFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             -------------HH--HHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred             -------------hh--hhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence                         00  0011346667777766544331 1345667777777777666 45566677777777777777


Q ss_pred             CCCCCh--HHhhCCCCCCEeeCCCCCCcc-CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCch
Q 007984          415 IKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT  491 (582)
Q Consensus       415 l~~~~~--~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  491 (582)
                      +++++.  ..+..+++|++|++++|.+.. ++...+..+++|++|++++|.+++..+                       
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------  445 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-----------------------  445 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-----------------------
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh-----------------------
Confidence            766543  335667777777777777766 555556667777777777776543211                       


Q ss_pred             hhhcc-CCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          492 DILRL-QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       492 ~~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                        ..+ ++|+.|++++|+++.+|..+.++++|++|++++|+++++|+..+..+++|+.|++++|++..
T Consensus       446 --~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          446 --RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             --SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             --hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence              112 68999999999999999887899999999999999999999866667999999999999863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-38  Score=331.88  Aligned_cols=442  Identities=22%  Similarity=0.229  Sum_probs=329.1

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCccc-chh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l-~~~   86 (582)
                      ...++++++++.++.+|..+               .+++++|++++|.++.++ ..|..+++|++|++++|.++.+ |++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~---------------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   95 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV   95 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS---------------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred             CCCcEEEcCCCCCccCCCCC---------------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence            34478999999999999876               468999999999999886 5899999999999999999977 668


Q ss_pred             hhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCC--cccccCCCCCeEEcCCCcCCCCccccccCCCC--
Q 007984           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--  162 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L--  162 (582)
                      |..+++|++|++++|.+..+|..  .+++|++|++++|.+..++  ..+.++++|++|++++|.+...  .+..+++|  
T Consensus        96 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L  171 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHL  171 (562)
T ss_dssp             TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCE
T ss_pred             hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhcee
Confidence            99999999999999999998876  8999999999999999764  6899999999999999998753  45556666  


Q ss_pred             cEEEccCCcc--cccchhhhcccc-cCcEEEccCCccCc-cc-hhhcCCCCccEEeCCCCcCc-----cCCcCCcCCCCC
Q 007984          163 SKLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-MP-ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL  232 (582)
Q Consensus       163 ~~L~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~l~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L  232 (582)
                      ++|++++|.+  ....+..+..+. ..-.+++++|.+.. ++ ..+..+++|+.+++++|...     .....+..+++|
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L  251 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL  251 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred             eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence            9999999988  655555555543 11144666666543 22 34556778888888887421     222345667777


Q ss_pred             cEEEcCCCcCc-----ccchhhhccCCCcEEEcccCccc-ccchhhhc---ccccEE---EccCCCCCCCCc-ccc---C
Q 007984          233 AEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LRLSVL---DLSNNSLSGLPP-EIG---K  296 (582)
Q Consensus       233 ~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~---~~L~~l---~l~~~~l~~~~~-~l~---~  296 (582)
                      +.+++.++.+.     .++..+ ..++|++|++++|.+. .++...+.   ..++.+   ++..+.+ .+|. .+.   .
T Consensus       252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~  329 (562)
T 3a79_B          252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA  329 (562)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred             eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence            77777766655     222222 2348888888888776 44433211   233333   4444444 3332 111   1


Q ss_pred             CCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCcc-CChh
Q 007984          297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSE  375 (582)
Q Consensus       297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-i~~~  375 (582)
                      ..++++|++++|.+.....                                     ......++.+++.++.+.. +|..
T Consensus       330 ~~~L~~L~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          330 EMNIKMLSISDTPFIHMVC-------------------------------------PPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             TCCCSEEEEESSCCCCCCC-------------------------------------CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             cCcceEEEccCCCcccccC-------------------------------------ccCCCCceEEECCCCccccchhhh
Confidence            2568888888877643210                                     0123567788888888775 6677


Q ss_pred             hhccCCccEEEcCCCcCCcCC---ccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCC
Q 007984          376 IWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (582)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~---~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  451 (582)
                      +..+++|++|++++|.++.++   ..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++.....+.  +
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence            778999999999999999765   458899999999999999988 7776788999999999999998764333222  7


Q ss_pred             CCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007984          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN  530 (582)
Q Consensus       452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n  530 (582)
                      +|+.|++++|.++.+.                       ..+..+++|+.|++++|+++.+|.. +..+++|++|++++|
T Consensus       451 ~L~~L~L~~N~l~~ip-----------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          451 KVKVLDLHNNRIMSIP-----------------------KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             TCSEEECCSSCCCCCC-----------------------TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             cCCEEECCCCcCcccC-----------------------hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence            9999999999887543                       2334668888999999999888876 888899999999998


Q ss_pred             cCC
Q 007984          531 NIS  533 (582)
Q Consensus       531 ~l~  533 (582)
                      ++.
T Consensus       508 ~~~  510 (562)
T 3a79_B          508 PWD  510 (562)
T ss_dssp             CBC
T ss_pred             CcC
Confidence            776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-37  Score=312.21  Aligned_cols=404  Identities=27%  Similarity=0.319  Sum_probs=202.9

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc-ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (582)
                      ...|++|+++++.++.+|+.++++++|++|++++|.+. .+|..++.+.+|+.+++.+|.          ..++++|+++
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~   79 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN   79 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence            46788888888888888888888888888888888876 667777777766444333221          1234555555


Q ss_pred             CCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchh
Q 007984          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (582)
Q Consensus       123 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (582)
                      +|.++.+|..   .++|++|++++|.+..+|..   .++|++|++++|+++.++..    .++|++|++++|.+..+| .
T Consensus        80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~  148 (454)
T 1jl5_A           80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E  148 (454)
T ss_dssp             TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred             CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence            5555555432   24555666665555555432   25566666666655544321    145666666666666555 3


Q ss_pred             hcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEc
Q 007984          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (582)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  282 (582)
                      +..+++|+.|++++|.+..+|..+   .+|++|++++|.+..+| .++.+++|++|++++|.+..++..  ..+++++++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l  222 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA  222 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence            566666666666666666555432   36666777776666665 466667777777777766654432  235777777


Q ss_pred             cCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEE
Q 007984          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (582)
Q Consensus       283 ~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (582)
                      ++|.+..+| .+..+++|++|++++|.+..++.                                       ....++.+
T Consensus       223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~---------------------------------------~~~~L~~L  262 (454)
T 1jl5_A          223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---------------------------------------LPPSLEAL  262 (454)
T ss_dssp             CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS---------------------------------------CCTTCCEE
T ss_pred             cCCcCCccc-ccCCCCCCCEEECCCCcCCcccc---------------------------------------cccccCEE
Confidence            777777666 37778888888888877653321                                       01245556


Q ss_pred             EecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCC-CCCCEeeCCCCCCcc
Q 007984          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQ  441 (582)
Q Consensus       363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~l~~  441 (582)
                      ++.+|.+..+|..   .++|++|++++|.++.++..   .++|++|++++|.+++++     .+ ++|++|++++|++.+
T Consensus       263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc
Confidence            6666655555543   25667777777766655431   256677777766665432     22 466777777766666


Q ss_pred             CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCc---cchhhcC
Q 007984          442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS---IPEGFKN  518 (582)
Q Consensus       442 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~  518 (582)
                      ++..    +++|++|++++|.++.+..                          .+++|++|++++|.++.   +|..+..
T Consensus       332 lp~~----~~~L~~L~L~~N~l~~lp~--------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          332 LPAL----PPRLERLIASFNHLAEVPE--------------------------LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             CCCC----CTTCCEEECCSSCCSCCCC--------------------------CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             cccc----CCcCCEEECCCCccccccc--------------------------hhhhccEEECCCCCCCcCCCChHHHHh
Confidence            5432    4666777777666654322                          23556666666666554   3344444


Q ss_pred             C-------------CCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcc
Q 007984          519 L-------------TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI  559 (582)
Q Consensus       519 l-------------~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~  559 (582)
                      +             ++|++|++++|+++++|.    .+++++.|++.+|.+...
T Consensus       382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~----iP~sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          382 LRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDP  431 (454)
T ss_dssp             EECCC-------------------------------------------------
T ss_pred             hhhcccccccccccCcCCEEECCCCcCCcccc----chhhHhheeCcCcccCCc
Confidence            4             788999999998886543    346788888888876554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7e-36  Score=318.24  Aligned_cols=476  Identities=21%  Similarity=0.240  Sum_probs=366.7

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCcccch-h
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l~~-~   86 (582)
                      +.+++||++++.++.+|...|..            +++|++|+|++|.++.++. +|.++++|++|+|++|+++.++. .
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            36899999999999999765544            8899999999999999865 79999999999999999998865 7


Q ss_pred             hhCCCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCcCCCCc-cccccCCC-
Q 007984           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK-  161 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~-  161 (582)
                      |.++++|++|++++|.+..++. .|+++++|++|++++|.+..  +|..+..+++|++|++++|.+..++ ..+..+.+ 
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            8999999999999999998865 48999999999999999874  4678889999999999999998653 33444333 


Q ss_pred             ---CcEEEccCCcccccchhhhcccccCcEEEccCCccC--ccchhhcCCCCccEEeC----------------------
Q 007984          162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL----------------------  214 (582)
Q Consensus       162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l----------------------  214 (582)
                         ...++++.+.+..+....+.. ..++.+++.++...  ..+..+..+..++...+                      
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence               347888888888776654433 34555666555332  11222333333332222                      


Q ss_pred             --------CCCcC----ccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEc
Q 007984          215 --------HQNRI----LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (582)
Q Consensus       215 --------~~~~~----~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  282 (582)
                              ..+..    ......+....+++.+.+.++.+..++ .+.....++.+++.++.+..+... ....++.+++
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~l~l  356 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTF  356 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCC-BCTTCCEEEE
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcc-cchhhhhccc
Confidence                    21111    122334566778889999888877654 356678999999999988766543 2345888888


Q ss_pred             cCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEE
Q 007984          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (582)
Q Consensus       283 ~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (582)
                      ..+.....+ ....+++++.++++.|.+......                                 .........++.+
T Consensus       357 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L  402 (635)
T 4g8a_A          357 TSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCC---------------------------------SQSDFGTISLKYL  402 (635)
T ss_dssp             ESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEEC---------------------------------CHHHHSCSCCCEE
T ss_pred             ccccCCCCc-ccccccccccchhhcccccccccc---------------------------------ccchhhhhhhhhh
Confidence            888766543 345789999999999987533210                                 0111223567888


Q ss_pred             EecCCCCccCChhhhccCCccEEEcCCCcCCcCC--ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCc
Q 007984          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (582)
Q Consensus       363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  440 (582)
                      ++..+....++..+..+++|+.+++.++......  ..+..+++++.++++.|.+.......+..+++|+.|++++|.+.
T Consensus       403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence            8888888877778888999999999998766533  35788999999999999998888888899999999999999744


Q ss_pred             -cCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCc-hhhhccCCCCEEecCCCcCCcc-chhh
Q 007984          441 -QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP-TDILRLQQLRILDLSQNSLQSI-PEGF  516 (582)
Q Consensus       441 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l-~~~~  516 (582)
                       .+.+..|..+++|++|++++|.++++.+..|.++++|++|++ .+.+..++ ..+..+++|++|++++|+++.+ |..+
T Consensus       483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence             455667899999999999999999999999999999999999 66777664 4688999999999999999977 4567


Q ss_pred             cCC-CCCCEEeCCCCcCC
Q 007984          517 KNL-TSLTELDLSDNNIS  533 (582)
Q Consensus       517 ~~l-~~L~~L~l~~n~l~  533 (582)
                      .++ ++|++|++++|.+.
T Consensus       563 ~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TCCCTTCCEEECTTCCBC
T ss_pred             HhhhCcCCEEEeeCCCCc
Confidence            777 68999999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-35  Score=299.52  Aligned_cols=349  Identities=26%  Similarity=0.292  Sum_probs=240.0

Q ss_pred             HHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCcc-chhHhhcCCCCC-------------cE
Q 007984            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TV   72 (582)
Q Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~L-------------~~   72 (582)
                      +.+.+++++++++.++.+|..+..             +++|++|+++++.+. .+|..++.+++|             ++
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~   75 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE   75 (454)
T ss_dssp             --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred             ccccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence            358899999999999999987643             889999999999877 677788877764             99


Q ss_pred             EEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCC
Q 007984           73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL  152 (582)
Q Consensus        73 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i  152 (582)
                      |+++++.++.+|..   .++|++|++++|.+..+|..   .++|++|++++|.+..++..   .++|++|++++|.+..+
T Consensus        76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~l  146 (454)
T 1jl5_A           76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKL  146 (454)
T ss_dssp             EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred             EEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCC
Confidence            99999999887762   47899999999999888753   47899999999998877643   26899999999999988


Q ss_pred             ccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCC
Q 007984          153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL  232 (582)
Q Consensus       153 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L  232 (582)
                      | .++.+++|++|++++|+++.++..    ..+|++|++++|.+..++ .+..+++|+.|++++|.+..+|...   ++|
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L  217 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL  217 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred             c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence            7 689999999999999998876542    358999999999998887 5888999999999999988776543   589


Q ss_pred             cEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (582)
Q Consensus       233 ~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~  312 (582)
                      ++|++++|.+..+|. ++.+++|++|++++|.+..++..  ..+++.+++++|.+.+++..   .++|++|++++|.++.
T Consensus       218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred             cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence            999999999988874 88889999999999988876642  35688999998888887653   4788888888887754


Q ss_pred             ccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcC
Q 007984          313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI  392 (582)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l  392 (582)
                      ++.                                       .+..++.+++.++.+..++..   .++|++|++++|.+
T Consensus       292 l~~---------------------------------------~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          292 LSE---------------------------------------LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKL  329 (454)
T ss_dssp             ESC---------------------------------------CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCC
T ss_pred             ccC---------------------------------------cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcc
Confidence            320                                       012345555555555443321   13555555555555


Q ss_pred             CcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCcc
Q 007984          393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ  441 (582)
Q Consensus       393 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  441 (582)
                      +.+|..   +++|++|++++|.++.++.    .+++|++|++++|++..
T Consensus       330 ~~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          330 IELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             SCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred             cccccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence            554432   3455555555555554443    24555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.4e-34  Score=293.02  Aligned_cols=346  Identities=25%  Similarity=0.360  Sum_probs=227.9

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      +++++.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            456778888777777665 36677778888888777777655 7777777788777777776655 77777777777777


Q ss_pred             CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (582)
Q Consensus       124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (582)
                      |.+..++. +.++++|++|++++|.+..++ .+..+++|++|+++ +.+..+.+  +..+++|++|++++|.+..++ .+
T Consensus       122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l  195 (466)
T 1o6v_A          122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-VL  195 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence            77776654 667777777777777777664 46777777777775 33443333  666677777777777666553 35


Q ss_pred             cCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEcc
Q 007984          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (582)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~  283 (582)
                      ..+++|+.|++++|.+...+. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+...+......+|+.++++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  273 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG  273 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence            566667777777666665433 555666666666666666553 455666666666666666555443333345555555


Q ss_pred             CCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEE
Q 007984          284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (582)
Q Consensus       284 ~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  363 (582)
                      +|.+..++. +..+++|++|++++|.+                                                     
T Consensus       274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l-----------------------------------------------------  299 (466)
T 1o6v_A          274 ANQISNISP-LAGLTALTNLELNENQL-----------------------------------------------------  299 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCC-----------------------------------------------------
T ss_pred             CCccCcccc-ccCCCccCeEEcCCCcc-----------------------------------------------------
Confidence            555555443 44555555555555544                                                     


Q ss_pred             ecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCC
Q 007984          364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP  443 (582)
Q Consensus       364 l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  443 (582)
                            ..++. +..+++|++|++++|.+++++. +..+++|++|++++|.+++.+  .+..+++|+.|++++|++.+..
T Consensus       300 ------~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          300 ------EDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             ------SCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred             ------cCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence                  22222 3446677777777777776654 667777777777777777763  3677777777777777777665


Q ss_pred             CccccCCCCCcEEeCCCCcCCCC
Q 007984          444 SDGFKDIPMLQILDLSYNIASLP  466 (582)
Q Consensus       444 ~~~~~~~~~L~~L~l~~n~l~~~  466 (582)
                      +  +..+++|+.|++++|.+++.
T Consensus       370 ~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          370 P--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             G--GTTCTTCCEEECCCEEEECC
T ss_pred             h--hhcCCCCCEEeccCCcccCC
Confidence            4  66777777777777776654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-34  Score=294.12  Aligned_cols=352  Identities=23%  Similarity=0.358  Sum_probs=267.4

Q ss_pred             hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEc
Q 007984           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (582)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l  167 (582)
                      ..+++++.|++.++.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  119 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence            346789999999999988874 7889999999999999998876 8899999999999999998876 899999999999


Q ss_pred             cCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccch
Q 007984          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (582)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~  247 (582)
                      ++|.++.+++  +..+++|++|++++|.+..++ .+..+++|+.|++++ .+...+ .+..+++|++|++++|.+..++ 
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-  193 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS-  193 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-
Confidence            9999988765  888999999999999888775 477888999999863 444443 3778888888888888888764 


Q ss_pred             hhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHH
Q 007984          248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (582)
Q Consensus       248 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  327 (582)
                      .+..+++|++|++++|.+..........+|+.+++++|.+..+ ..+..+++|++|++++|.+..               
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~---------------  257 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN---------------  257 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC---------------
T ss_pred             hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcccc---------------
Confidence            4777888888888888877665544445577777777766665 235566666666666665532               


Q ss_pred             HHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCE
Q 007984          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT  407 (582)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~  407 (582)
                                                                  ++. +..+++|++|++++|.++.++. +..+++|++
T Consensus       258 --------------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  291 (466)
T 1o6v_A          258 --------------------------------------------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTN  291 (466)
T ss_dssp             --------------------------------------------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             --------------------------------------------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence                                                        211 3446677888888887777665 677778888


Q ss_pred             EEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccc
Q 007984          408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR  487 (582)
Q Consensus       408 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~  487 (582)
                      |++++|.+++++.  +..+++|+.|++++|++.++.+  +..+++|+.|++++|.+++.                     
T Consensus       292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---------------------  346 (466)
T 1o6v_A          292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---------------------  346 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---------------------
T ss_pred             EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc---------------------
Confidence            8888887777654  6777888888888887777654  56777788888887766543                     


Q ss_pred             cCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcc
Q 007984          488 EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL  539 (582)
Q Consensus       488 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~  539 (582)
                         ..+..+++|+.|++++|++..++. +..+++|++|++++|+++.+|...
T Consensus       347 ---~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          347 ---SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred             ---hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence               234566778888888888876654 777888888888888777766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.2e-34  Score=290.54  Aligned_cols=369  Identities=21%  Similarity=0.252  Sum_probs=206.8

Q ss_pred             cEEecCCCcCccCChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCC-CC-ccccccCCCCcEEEccCC
Q 007984           94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCIT-SL-PEDLADCSKMSKLDVEGN  170 (582)
Q Consensus        94 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~i-~~~l~~~~~L~~L~l~~~  170 (582)
                      +.++.+++.++.+|.   -.++|++|++++|.+..+ +..+.++++|++|++++|.+. .+ +..|..+++|++|++++|
T Consensus        13 ~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            345566666666665   225677777777766654 445666667777777666654 33 334666666666666666


Q ss_pred             cccccchhhhcccccCcEEEccCCccCc-cch--hhcCCCCccEEeCCCCcCccC-CcC-CcCCCCCcEEEcCCCcCccc
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNLLNG-MPE--TIGSLSRLIRLDLHQNRILSI-PSS-ISGCCSLAEFYMGNNALSAL  245 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~--~l~~~~~L~~L~l~~~~~~~~-~~~-l~~~~~L~~L~l~~~~i~~l  245 (582)
                      ++..+.+..++++++|++|++++|.+.. ++.  .+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+..+
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            6666655556666666666666665543 222  245555555555555555544 222 44555555555555554422


Q ss_pred             -chhhhcc--CCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCc
Q 007984          246 -PAELGKL--SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (582)
Q Consensus       246 -~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (582)
                       +..+..+  ++|+.++++++.+..++.......             ....+..+++|++|++++|.+....        
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-------------~~~~~~~~~~L~~L~Ls~n~l~~~~--------  228 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-------------KCGNPFKNTSITTLDLSGNGFKESM--------  228 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-------------HHCCTTTTCEEEEEECTTSCCCHHH--------
T ss_pred             ChhhhhccccccccccccccCcccccchhhcccc-------------ccccccccceeeeEecCCCcccccc--------
Confidence             2222222  344444444444333221110000             0001223456666666666553211        


Q ss_pred             HHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhc---cCCccEEEcCCCcCCc-----
Q 007984          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE---AGEITKLDLSRNSIQE-----  394 (582)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~---~~~L~~L~l~~~~l~~-----  394 (582)
                                                                        +..+..   .++|+.+++++|....     
T Consensus       229 --------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  258 (455)
T 3v47_A          229 --------------------------------------------------AKRFFDAIAGTKIQSLILSNSYNMGSSFGH  258 (455)
T ss_dssp             --------------------------------------------------HHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred             --------------------------------------------------hhhhhccccccceeeEeeccccccccccch
Confidence                                                              011110   1344444444442221     


Q ss_pred             -----CC-cccc--CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCC
Q 007984          395 -----LP-PELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (582)
Q Consensus       395 -----l~-~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  466 (582)
                           .. ..+.  ..++|++|++++|.+++..+..+..+++|++|++++|.+.++.+..|..+++|++|++++|.++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  338 (455)
T 3v47_A          259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI  338 (455)
T ss_dssp             CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence                 00 0111  235566666666666665555566666666666666666666555566666666666666655433


Q ss_pred             CCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccccccc
Q 007984          467 ENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPS  545 (582)
Q Consensus       467 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~  545 (582)
                      .                      +..+..+++|++|++++|.++.+ |..+.++++|++|++++|+++++|+..+..+++
T Consensus       339 ~----------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  396 (455)
T 3v47_A          339 D----------------------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS  396 (455)
T ss_dssp             C----------------------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             C----------------------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence            2                      23455667888888888888766 566788888888888888888888777666788


Q ss_pred             cceeeccCCCCCc
Q 007984          546 LQALRLDGNPLRS  558 (582)
Q Consensus       546 L~~L~l~~~~~~~  558 (582)
                      |+.|++++|++..
T Consensus       397 L~~L~l~~N~l~~  409 (455)
T 3v47_A          397 LQKIWLHTNPWDC  409 (455)
T ss_dssp             CCEEECCSSCBCC
T ss_pred             ccEEEccCCCccc
Confidence            8888888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-33  Score=286.33  Aligned_cols=380  Identities=22%  Similarity=0.260  Sum_probs=247.9

Q ss_pred             ccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCc-cC-ChhhhccCCccEEEccC
Q 007984           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS  123 (582)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~  123 (582)
                      -+.++.+++.++.+|. +  .++|++|+++++.++.+ +..+..+++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4578888888888876 3  37899999999999876 668889999999999999876 44 45688899999999999


Q ss_pred             CcCCcC-CcccccCCCCCeEEcCCCcCCC-Cccc--cccCCCCcEEEccCCcccccchhh-hcccccCcEEEccCCccCc
Q 007984          124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNNL-IASWTMLTELIASKNLLNG  198 (582)
Q Consensus       124 ~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-i~~~--l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L~l~~~~~~~  198 (582)
                      |.+..+ |..+.++++|++|++++|.+.. ++..  +..+++|++|++++|++..+.+.. +..+++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            988855 6678888888888888888874 3333  777888888888888887765443 6777777777777777754


Q ss_pred             cc-hhhcCC--CCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhh--
Q 007984          199 MP-ETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--  273 (582)
Q Consensus       199 ~~-~~l~~~--~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~--  273 (582)
                      ++ ..+..+  .+|+.|+++++.+..++......              .....+..+++|++|++++|.+........  
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhhc
Confidence            42 333332  46667777766665443211000              000011223455555555554443222111  


Q ss_pred             ---cccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHh
Q 007984          274 ---QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (582)
Q Consensus       274 ---~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (582)
                         ..+++.+++++|...........++...                                                 
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------------------------------------  265 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-------------------------------------------------  265 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-------------------------------------------------
T ss_pred             cccccceeeEeeccccccccccchhhhccCc-------------------------------------------------
Confidence               1123333333332221100000000000                                                 


Q ss_pred             hhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCChHHhhCCCCC
Q 007984          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (582)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L  429 (582)
                                          .....-...++|+.+++++|.+..+ +..+..+++|++|++++|.+++..+..+..+++|
T Consensus       266 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          266 --------------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             --------------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             --------------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence                                0000001135678888888877764 4567788888888888888887777677888888


Q ss_pred             CEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcC
Q 007984          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL  509 (582)
Q Consensus       430 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l  509 (582)
                      ++|++++|.++++.+..|..+++|++|++++|.+++..+..+                      ..+++|++|++++|++
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF----------------------LGLPNLKELALDTNQL  383 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT----------------------TTCTTCCEEECCSSCC
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc----------------------cccccccEEECCCCcc
Confidence            888888888888777778888888888888887765544333                      3456777777777777


Q ss_pred             Cccch-hhcCCCCCCEEeCCCCcCCc
Q 007984          510 QSIPE-GFKNLTSLTELDLSDNNISA  534 (582)
Q Consensus       510 ~~l~~-~~~~l~~L~~L~l~~n~l~~  534 (582)
                      +.+|. .+..+++|++|++++|+++.
T Consensus       384 ~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          384 KSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCHhHhccCCcccEEEccCCCccc
Confidence            77654 35777788888888887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-33  Score=283.31  Aligned_cols=352  Identities=21%  Similarity=0.235  Sum_probs=208.7

Q ss_pred             cccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (582)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  120 (582)
                      +.++++|++|+++++.++.+| .+..+++|++|++++|.++.++  +..+++|++|++++|.+..++  +..+++|++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            344666777777777666665 5666677777777777666653  666667777777776666654  56666677777


Q ss_pred             ccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCc-ccccchhhhcccccCcEEEccCCccCcc
Q 007984          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGM  199 (582)
Q Consensus       121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (582)
                      +++|.+..++  +.++++|++|++++|.+..++  ++.+++|++|++++|+ +..+   .+..+++|++|++++|.++.+
T Consensus       113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence            7766666653  566666666666666666552  5566666666666662 3333   145555566666666655555


Q ss_pred             chhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccE
Q 007984          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV  279 (582)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~  279 (582)
                      +  +..+++|+.|++++|.+..+  .+..+++|+.|++++|.++.+|  +..+++|++|++++|.++             
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~-------------  246 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT-------------  246 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-------------
T ss_pred             c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC-------------
Confidence            4  44555555555555555544  2455555555555555555544  444555555555555444             


Q ss_pred             EEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccc
Q 007984          280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS  359 (582)
Q Consensus       280 l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (582)
                               +++  ...+++|+.++++++.+.                                                
T Consensus       247 ---------~~~--~~~l~~L~~L~l~~n~L~------------------------------------------------  267 (457)
T 3bz5_A          247 ---------ELD--VSTLSKLTTLHCIQTDLL------------------------------------------------  267 (457)
T ss_dssp             ---------CCC--CTTCTTCCEEECTTCCCS------------------------------------------------
T ss_pred             ---------CcC--HHHCCCCCEEeccCCCCC------------------------------------------------
Confidence                     332  234555555555554432                                                


Q ss_pred             cEEEecCCCC-ccCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCC
Q 007984          360 KELSLEGMNL-SAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (582)
Q Consensus       360 ~~l~l~~~~~-~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  437 (582)
                       .+++.+|.. ..+|  ...+++|+.|++++|.... +|.   ..++|+.|++             ..+++|++|++++|
T Consensus       268 -~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l-------------~~~~~L~~L~L~~N  328 (457)
T 3bz5_A          268 -EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL-------------SQNPKLVYLYLNNT  328 (457)
T ss_dssp             -CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC-------------TTCTTCCEEECTTC
T ss_pred             -EEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech-------------hhcccCCEEECCCC
Confidence             222233321 1222  2346778888888776432 332   2344555443             34578899999999


Q ss_pred             CCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCC-ccchh
Q 007984          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG  515 (582)
Q Consensus       438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~  515 (582)
                      ++++++   +..+++|+.|++++|.+++        ++.|..|.+..+.....   ..+..|+.+++++|+++ .+|..
T Consensus       329 ~l~~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~---~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          329 ELTELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE---GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CCSCCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---ceeeecCccccccCcEEEEcChh
Confidence            888863   7888999999999988765        35566666522221111   34566777888888777 56644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.4e-33  Score=279.31  Aligned_cols=353  Identities=25%  Similarity=0.318  Sum_probs=283.5

Q ss_pred             HHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccc
Q 007984            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (582)
Q Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~   84 (582)
                      +...+.+++|+++++.++.+| .+.             .+++|++|++++|.++.++  +..+++|++|++++|.++.++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~-------------~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIE-------------KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGG-------------GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhc-------------ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence            456789999999999999887 332             2789999999999999885  889999999999999999884


Q ss_pred             hhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCC-cCCCCccccccCCCCc
Q 007984           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMS  163 (582)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~i~~~l~~~~~L~  163 (582)
                        +..+++|++|++++|.+..++  +..+++|++|++++|.++.++  +.++++|++|++++| .+..+  .+..+++|+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence              889999999999999999886  889999999999999999874  788999999999999 45555  578899999


Q ss_pred             EEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      +|++++|+++.++   +..+++|++|++++|.+..++  +..+++|+.|++++|.+..+|  +..+++|+.|++++|.++
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence            9999999999875   788999999999999998874  788999999999999999987  889999999999999999


Q ss_pred             ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCccccccccCCCc
Q 007984          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (582)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (582)
                      .++  .+.+++|+.++++.+.            ++.+++++|...+ +|  +..+++|+.|++++|....          
T Consensus       247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~----------  300 (457)
T 3bz5_A          247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY----------  300 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC----------
T ss_pred             CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccc----------
Confidence            876  5678899999988764            4566777776544 32  4678999999999986421          


Q ss_pred             HHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCC
Q 007984          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC  402 (582)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~  402 (582)
                                                            .+......+..+.  +..+++|++|++++|.++.++  +..+
T Consensus       301 --------------------------------------~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l~--l~~l  338 (457)
T 3bz5_A          301 --------------------------------------LLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHN  338 (457)
T ss_dssp             --------------------------------------EEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred             --------------------------------------eeccCCCcceEec--hhhcccCCEEECCCCcccccc--cccC
Confidence                                                  1111112222221  334567888888888887764  7778


Q ss_pred             CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCC
Q 007984          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (582)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  469 (582)
                      ++|++|++++|+++++        +.|..|++++|.+.+.     ..+..|..+++++|.+++..+.
T Consensus       339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             CcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            8888888888877653        4555666666665543     2445677778888887755443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5e-32  Score=265.43  Aligned_cols=305  Identities=19%  Similarity=0.339  Sum_probs=191.0

Q ss_pred             CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcC
Q 007984           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (582)
Q Consensus        66 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  145 (582)
                      .+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+.++++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence            4566666776666666654 35666666666666666665544 566666666666666665553 35555666666666


Q ss_pred             CCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcC
Q 007984          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (582)
Q Consensus       146 ~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  225 (582)
                      +|.+..++. +..+++|++|++++|...                        .....+..+++|+.|++++|.+..++. 
T Consensus       119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~-  172 (347)
T 4fmz_A          119 EDNISDISP-LANLTKMYSLNLGANHNL------------------------SDLSPLSNMTGLNYLTVTESKVKDVTP-  172 (347)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECTTCTTC------------------------CCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCcccCchh-hccCCceeEEECCCCCCc------------------------ccccchhhCCCCcEEEecCCCcCCchh-
Confidence            665555543 555555555555555322                        222224444445555555544443322 


Q ss_pred             CcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEc
Q 007984          226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL  305 (582)
Q Consensus       226 l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l  305 (582)
                      +..+++|++|++++|.+..++. +..+++|+.+++++|.+..........+++++++++|.+..++. +..+++|++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  250 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEI  250 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEEC
Confidence            4445555555555555554433 45555556666655555554443333345555666665555544 667777777777


Q ss_pred             cCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEE
Q 007984          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL  385 (582)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L  385 (582)
                      ++|.+..+                                                            ..+..+++|++|
T Consensus       251 ~~n~l~~~------------------------------------------------------------~~~~~l~~L~~L  270 (347)
T 4fmz_A          251 GTNQISDI------------------------------------------------------------NAVKDLTKLKML  270 (347)
T ss_dssp             CSSCCCCC------------------------------------------------------------GGGTTCTTCCEE
T ss_pred             CCCccCCC------------------------------------------------------------hhHhcCCCcCEE
Confidence            77765321                                                            133446788888


Q ss_pred             EcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984          386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (582)
Q Consensus       386 ~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~  464 (582)
                      ++++|.+++++ .+..+++|++|++++|.+++.....+..+++|++|++++|+++.+.+  +..+++|++|++++|.++
T Consensus       271 ~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          271 NVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888888874 57788899999999998888888888889999999999999888765  778889999999988764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.6e-32  Score=263.78  Aligned_cols=306  Identities=23%  Similarity=0.339  Sum_probs=241.8

Q ss_pred             cccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (582)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  120 (582)
                      +..++++++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence            345789999999999999886 48889999999999999998866 999999999999999998875 588999999999


Q ss_pred             ccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (582)
                      +++|.+..++. +..+++|++|++++|........+..+++|++|+++++.+..+..  +..+++|++|++++|.+..++
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence            99999998865 889999999999999665555668999999999999999887766  778888888888888887766


Q ss_pred             hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEE
Q 007984          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL  280 (582)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l  280 (582)
                      . +..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.             
T Consensus       194 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------  257 (347)
T 4fmz_A          194 P-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-------------  257 (347)
T ss_dssp             G-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------------
T ss_pred             c-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-------------
Confidence            5 6677888888888887776544 6667777777777777776654 6666677777666665544             


Q ss_pred             EccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhccccccc
Q 007984          281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK  360 (582)
Q Consensus       281 ~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  360 (582)
                               + ..+..+++|++|++++|.+..+                                               
T Consensus       258 ---------~-~~~~~l~~L~~L~l~~n~l~~~-----------------------------------------------  280 (347)
T 4fmz_A          258 ---------I-NAVKDLTKLKMLNVGSNQISDI-----------------------------------------------  280 (347)
T ss_dssp             ---------C-GGGTTCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred             ---------C-hhHhcCCCcCEEEccCCccCCC-----------------------------------------------
Confidence                     2 2356677788888877765322                                               


Q ss_pred             EEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCC
Q 007984          361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (582)
Q Consensus       361 ~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  439 (582)
                                   ..+..+++|++|++++|.++..+ ..+..+++|++|++++|.+++.++  +..+++|++|++++|++
T Consensus       281 -------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          281 -------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             -------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             -------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence                         12344677888888888877643 467888889999998888888766  78888999999988876


Q ss_pred             c
Q 007984          440 R  440 (582)
Q Consensus       440 ~  440 (582)
                      +
T Consensus       346 ~  346 (347)
T 4fmz_A          346 K  346 (347)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-30  Score=257.87  Aligned_cols=307  Identities=23%  Similarity=0.249  Sum_probs=198.0

Q ss_pred             cCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEE
Q 007984          135 RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRL  212 (582)
Q Consensus       135 ~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L  212 (582)
                      .+++++.|+++++.+..+|.. +..+++|++|+++++.+..+....+..+++|++|++++|.+..++ ..+..+++|+.|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            346677777777777766654 566777777777777777666666666777777777776665553 345666666666


Q ss_pred             eCCCCcCccCCcC-CcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCC
Q 007984          213 DLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL  290 (582)
Q Consensus       213 ~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  290 (582)
                      ++++|.+..++.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++                     
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------  181 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------  181 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------------------
Confidence            6666666666544 35666666666666666644 234555666666666665554321                     


Q ss_pred             CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc
Q 007984          291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (582)
Q Consensus       291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (582)
                         +..+++|+++++++|.+..+.                                                        
T Consensus       182 ---~~~l~~L~~L~l~~n~l~~~~--------------------------------------------------------  202 (390)
T 3o6n_A          182 ---LSLIPSLFHANVSYNLLSTLA--------------------------------------------------------  202 (390)
T ss_dssp             ---GGGCTTCSEEECCSSCCSEEE--------------------------------------------------------
T ss_pred             ---cccccccceeecccccccccC--------------------------------------------------------
Confidence               334566666666666543211                                                        


Q ss_pred             cCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC
Q 007984          371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (582)
Q Consensus       371 ~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  450 (582)
                             ..++|++|++++|.+..++..  ..++|++|++++|.+++..  .+..+++|++|++++|.+.++.+..+..+
T Consensus       203 -------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          203 -------IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             -------CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             -------CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHcccc
Confidence                   123567777777777665432  2467788888888777653  46778888888888888777766667778


Q ss_pred             CCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCC
Q 007984          451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  530 (582)
Q Consensus       451 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  530 (582)
                      ++|++|++++|.++++..                       ....+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus       272 ~~L~~L~L~~n~l~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNL-----------------------YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             SSCCEEECCSSCCCEEEC-----------------------SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred             ccCCEEECCCCcCcccCc-----------------------ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence            888888888876654321                       123456677777777777777666666777777777777


Q ss_pred             cCCcCCCcccccccccceeeccCCCCCc
Q 007984          531 NISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       531 ~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      +++.++   ...+++|+.|++++|++..
T Consensus       329 ~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          329 SIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             ccceeC---chhhccCCEEEcCCCCccc
Confidence            777664   2233677777777777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=5.3e-30  Score=262.29  Aligned_cols=314  Identities=19%  Similarity=0.252  Sum_probs=193.5

Q ss_pred             ccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCC
Q 007984          116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (582)
Q Consensus       116 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~  194 (582)
                      -+.++.++..++.+|..+.  ++++.|++++|.+..++ ..|..+++|++|++++|.+..+.+..+.++++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            3567777777777776543  57788888888877653 46777888888888888877777766777777777777777


Q ss_pred             ccCccch-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchh
Q 007984          195 LLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE  271 (582)
Q Consensus       195 ~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~  271 (582)
                      .+..++. .+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++..
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            7776664 356677777777777776644 45566777777777777776644 34566666666666666655544322


Q ss_pred             hhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhh
Q 007984          272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (582)
Q Consensus       272 ~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (582)
                                           .+..+++|+.|++++|.+..+..                                    
T Consensus       171 ---------------------~l~~l~~L~~L~l~~n~i~~~~~------------------------------------  193 (477)
T 2id5_A          171 ---------------------ALSHLHGLIVLRLRHLNINAIRD------------------------------------  193 (477)
T ss_dssp             ---------------------HHTTCTTCCEEEEESCCCCEECT------------------------------------
T ss_pred             ---------------------HhcccCCCcEEeCCCCcCcEeCh------------------------------------
Confidence                                 24555666666666655432211                                    


Q ss_pred             hhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCC-cCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCC
Q 007984          352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS  430 (582)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~  430 (582)
                                            ..+..+++|++|++++|... .++.......+|++|++++|.++.++...+..+++|+
T Consensus       194 ----------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          194 ----------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             ----------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred             ----------------------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence                                  12223455666666655432 2444444445677777777766666666666677777


Q ss_pred             EeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCc
Q 007984          431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNS  508 (582)
Q Consensus       431 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~  508 (582)
                      .|++++|.+..+....|..+++|+.|++++|.+.++.+..|..+++|++|++ .+.+..++. .+..+++|+.|++++|.
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            7777777766666666666677777777776666555544444443333333 222222222 23344555555555555


Q ss_pred             CC
Q 007984          509 LQ  510 (582)
Q Consensus       509 l~  510 (582)
                      +.
T Consensus       332 l~  333 (477)
T 2id5_A          332 LA  333 (477)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.4e-30  Score=256.41  Aligned_cols=304  Identities=19%  Similarity=0.239  Sum_probs=145.1

Q ss_pred             CCCcEEEcCCCCCcccchh-hhCCCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEc
Q 007984           68 PLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKA  144 (582)
Q Consensus        68 ~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l  144 (582)
                      ++++.|+++++.++.+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            4455555555555444432 3445555555555555444322 3444555555555555544432 23444555555555


Q ss_pred             CCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCC
Q 007984          145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (582)
Q Consensus       145 ~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  223 (582)
                      ++|.+..++.. +..+++|++|++++|++..+.+..+..+++|++|++++|.+..++  +..+++|+.|++++|.+..+ 
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~-  201 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL-  201 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc-
Confidence            55555544433 344555555555555555444444444455555555554444332  23344555555555444322 


Q ss_pred             cCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeE
Q 007984          224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL  303 (582)
Q Consensus       224 ~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L  303 (582)
                         ...++|+.|++++|.+..++..  ..++|++|++++|                      .+... ..+..+++|++|
T Consensus       202 ---~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n----------------------~l~~~-~~l~~l~~L~~L  253 (390)
T 3o6n_A          202 ---AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN----------------------NLTDT-AWLLNYPGLVEV  253 (390)
T ss_dssp             ---ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS----------------------CCCCC-GGGGGCTTCSEE
T ss_pred             ---CCCCcceEEECCCCeeeecccc--ccccccEEECCCC----------------------CCccc-HHHcCCCCccEE
Confidence               1123344444444444433221  1233444444433                      33332 234455555555


Q ss_pred             EccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCcc
Q 007984          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (582)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~  383 (582)
                      ++++|.+..+                                                          .+..+..+++|+
T Consensus       254 ~Ls~n~l~~~----------------------------------------------------------~~~~~~~l~~L~  275 (390)
T 3o6n_A          254 DLSYNELEKI----------------------------------------------------------MYHPFVKMQRLE  275 (390)
T ss_dssp             ECCSSCCCEE----------------------------------------------------------ESGGGTTCSSCC
T ss_pred             ECCCCcCCCc----------------------------------------------------------ChhHccccccCC
Confidence            5555544221                                                          122233344555


Q ss_pred             EEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcC
Q 007984          384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (582)
Q Consensus       384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l  463 (582)
                      +|++++|.++.++..+..+++|++|++++|.++.++.. +..+++|++|++++|+++.++   +..+++|+.|++++|.+
T Consensus       276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             EEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred             EEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCc
Confidence            55555555555544445555566666666655554433 445566666666666555543   44555666666666644


Q ss_pred             C
Q 007984          464 S  464 (582)
Q Consensus       464 ~  464 (582)
                      .
T Consensus       352 ~  352 (390)
T 3o6n_A          352 D  352 (390)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=7.6e-30  Score=261.16  Aligned_cols=313  Identities=20%  Similarity=0.277  Sum_probs=247.4

Q ss_pred             CcEEecCCCcCccCChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCC
Q 007984           93 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN  170 (582)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~  170 (582)
                      -+.++.+++.+..+|..+  .+++++|++++|.+..+ +..+.++++|++|++++|.+..+ +..|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            457888888899998765  36899999999999977 45789999999999999999976 677999999999999999


Q ss_pred             cccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccch-
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-  247 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~~-  247 (582)
                      +++.++...+.++++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. 
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            99999988899999999999999999765 46788999999999999998865 5689999999999999999997764 


Q ss_pred             hhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc-ccccccCCCcHHHH
Q 007984          248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT-LRSSLVNGPTPALL  326 (582)
Q Consensus       248 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~  326 (582)
                      .+..+++|+.|++++|.+..+...                     .+..+++|++|++++|.... ++...+        
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~---------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~--------  221 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDY---------------------SFKRLYRLKVLEISHWPYLDTMTPNCL--------  221 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTT---------------------CSCSCTTCCEEEEECCTTCCEECTTTT--------
T ss_pred             HhcccCCCcEEeCCCCcCcEeChh---------------------hcccCcccceeeCCCCccccccCcccc--------
Confidence            588999999999999887764332                     34556666667666654321 110000        


Q ss_pred             HHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCCh-hhhccCCccEEEcCCCcCCcCCc-cccCCCC
Q 007984          327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCAS  404 (582)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~  404 (582)
                                                  ...+++.+++.++.+..++. .+..+++|++|++++|.++.++. .+..+++
T Consensus       222 ----------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          222 ----------------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             ----------------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             ----------------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence                                        01245566666666666664 34457788888888888777654 5777888


Q ss_pred             CCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (582)
Q Consensus       405 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~  464 (582)
                      |++|++++|.++++....|..+++|+.|++++|.++.++...|..+++|+.|++++|.+.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            888888888888777777788888888888888888877777778888888888888664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=4.4e-29  Score=261.87  Aligned_cols=305  Identities=23%  Similarity=0.257  Sum_probs=177.4

Q ss_pred             cCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccch-hhcCCCCccEE
Q 007984          135 RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRL  212 (582)
Q Consensus       135 ~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L  212 (582)
                      .+.+++.++++++.+..+|.. +..+++|++|++++|.+..+.+..++.+++|++|++++|.+..++. .+..+++|+.|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            356777777777777777654 5667778888887777777776667777777777777777766543 45677777777


Q ss_pred             eCCCCcCccCCcC-CcCCCCCcEEEcCCCcCcccc-hhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCC
Q 007984          213 DLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL  290 (582)
Q Consensus       213 ~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~  290 (582)
                      ++++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++                     
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------  187 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------  187 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------------------
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------------------
Confidence            7777777766554 467777777777777776543 35666777777777776665432                     


Q ss_pred             CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc
Q 007984          291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (582)
Q Consensus       291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (582)
                         +..+++|+.+++++|.+..+.                                                        
T Consensus       188 ---~~~l~~L~~L~l~~n~l~~l~--------------------------------------------------------  208 (597)
T 3oja_B          188 ---LSLIPSLFHANVSYNLLSTLA--------------------------------------------------------  208 (597)
T ss_dssp             ---GGGCTTCSEEECCSSCCSEEE--------------------------------------------------------
T ss_pred             ---hhhhhhhhhhhcccCcccccc--------------------------------------------------------
Confidence               233455555555555442210                                                        


Q ss_pred             cCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC
Q 007984          371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (582)
Q Consensus       371 ~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  450 (582)
                             ..++|++|++++|.+..++..+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.++.+..|..+
T Consensus       209 -------~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          209 -------IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             -------CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             -------CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                   0123455555555554443221  24555555555555543  224555556666665555555544455555


Q ss_pred             CCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCC
Q 007984          451 PMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD  529 (582)
Q Consensus       451 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~  529 (582)
                      ++|+.|++++|.++++. ..+..+++|+.|++ .+.+..++..+..+++|+.|++++|.+..++  +..+++|++|++++
T Consensus       278 ~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~  354 (597)
T 3oja_B          278 QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH  354 (597)
T ss_dssp             SSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred             cCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence            56666666655554431 11222332222222 2222233444555566666666666666553  44556666666666


Q ss_pred             CcCC
Q 007984          530 NNIS  533 (582)
Q Consensus       530 n~l~  533 (582)
                      |.++
T Consensus       355 N~~~  358 (597)
T 3oja_B          355 NDWD  358 (597)
T ss_dssp             SCEE
T ss_pred             CCCC
Confidence            6554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5.8e-29  Score=260.94  Aligned_cols=171  Identities=18%  Similarity=0.266  Sum_probs=81.7

Q ss_pred             CCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEc
Q 007984           68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA  144 (582)
Q Consensus        68 ~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l  144 (582)
                      .+++.++++++.+..+|. .+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            445555555555554443 2344555555555555555432 244555555555555555554432 3345555555555


Q ss_pred             CCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCC
Q 007984          145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (582)
Q Consensus       145 ~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  223 (582)
                      ++|.+..++.. |..+++|++|++++|.+..+.+..++.+++|++|++++|.+..++  +..+++|+.|++++|.+..+ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l-  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL-  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence            55555544433 345555555555555555544444455555555555555444432  23344555555555444322 


Q ss_pred             cCCcCCCCCcEEEcCCCcCcc
Q 007984          224 SSISGCCSLAEFYMGNNALSA  244 (582)
Q Consensus       224 ~~l~~~~~L~~L~l~~~~i~~  244 (582)
                         ...++|+.|++++|.+..
T Consensus       208 ---~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          208 ---AIPIAVEELDASHNSINV  225 (597)
T ss_dssp             ---ECCTTCSEEECCSSCCCE
T ss_pred             ---cCCchhheeeccCCcccc
Confidence               122334444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.8e-28  Score=235.73  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             ccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhC------CCCCCEeeCCCCCCcc--CCCccccC
Q 007984          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS------LSSLSCLKLDNNPLRQ--VPSDGFKD  449 (582)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~------l~~L~~L~l~~~~l~~--~~~~~~~~  449 (582)
                      .+++|++|++++|.++.+|..+..+++|++|++++|.+++++...|..      .++|+.+++++|++..  +.+..|..
T Consensus       238 ~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence            356677777777777777777777778888888888777776665543      3778888888888764  66667888


Q ss_pred             CCCCcEEeCCCCc
Q 007984          450 IPMLQILDLSYNI  462 (582)
Q Consensus       450 ~~~L~~L~l~~n~  462 (582)
                      +.+++.+++++|+
T Consensus       318 ~~~l~~l~L~~N~  330 (330)
T 1xku_A          318 VYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCGGGEEC----
T ss_pred             ccceeEEEecccC
Confidence            8888888888773

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.2e-31  Score=271.78  Aligned_cols=381  Identities=20%  Similarity=0.184  Sum_probs=226.2

Q ss_pred             CCCcEEecCCCcCccC--ChhhhccCCccEEEccCCcCC-----cCCcccccCCCCCeEEcCCCcCCCC-ccc-cccCC-
Q 007984           91 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL-PED-LADCS-  160 (582)
Q Consensus        91 ~~L~~L~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~i-~~~-l~~~~-  160 (582)
                      ++|++|+++++.+...  ...+..+++|++|++++|.+.     .++..+..+++|++|++++|.+... +.. ...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3455666666555532  122445556666666655554     2233444445555555555544321 111 11122 


Q ss_pred             ---CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC-----CcC-CcCCCC
Q 007984          161 ---KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-----PSS-ISGCCS  231 (582)
Q Consensus       161 ---~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~-l~~~~~  231 (582)
                         +|++|++++|+++..+..                   .++..+..+++|+.|++++|.+...     ... ....++
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  143 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCG-------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR  143 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH-------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCceeEEEccCCCCCHHHHH-------------------HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence               344444444444422100                   2234455556666666666655411     111 223456


Q ss_pred             CcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCcccccchhhh-------cccccEEEccCCCCCC-----CCccc
Q 007984          232 LAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPEI  294 (582)
Q Consensus       232 L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------~~~L~~l~l~~~~l~~-----~~~~l  294 (582)
                      |++|++++|.++.     ++..+..+++|++|++++|.+........       ..+++++++++|.+..     ++..+
T Consensus       144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            6677777666663     34556667788888888777665333222       1257777777776665     34556


Q ss_pred             cCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCCh
Q 007984          295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS  374 (582)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~  374 (582)
                      ..+++|++|++++|.+.....                                                      ..+..
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~------------------------------------------------------~~l~~  249 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGM------------------------------------------------------AELCP  249 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHH------------------------------------------------------HHHHH
T ss_pred             HhCCCccEEeccCCcCChHHH------------------------------------------------------HHHHH
Confidence            678888888888887642110                                                      01111


Q ss_pred             hhh-ccCCccEEEcCCCcCCc-----CCccccCCCCCCEEEcccCcCCCCChHHhhC-----CCCCCEeeCCCCCCccCC
Q 007984          375 EIW-EAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVP  443 (582)
Q Consensus       375 ~~~-~~~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~  443 (582)
                      .+. .+++|++|++++|.++.     ++..+..+++|++|++++|.+++.....+..     .++|++|++++|.++...
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            111 35678888888888876     5666777888999999888876644433332     368999999998887643


Q ss_pred             ----CccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhh-ccCCCCEEecCCCcCC-----ccc
Q 007984          444 ----SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDIL-RLQQLRILDLSQNSLQ-----SIP  513 (582)
Q Consensus       444 ----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~-----~l~  513 (582)
                          +..+..+++|++|++++|.+++...                  ..+...+. ..++|++|++++|.++     .+|
T Consensus       330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          330 CSHFSSVLAQNRFLLELQISNNRLEDAGV------------------RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSBCHHHHH------------------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhCCCccEEEccCCccccccH------------------HHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence                2235667889999999887643211                  01111222 2579999999999998     577


Q ss_pred             hhhcCCCCCCEEeCCCCcCCcCCCc-----ccccccccceeeccCCCCCcchHH
Q 007984          514 EGFKNLTSLTELDLSDNNISALPPE-----LGLLEPSLQALRLDGNPLRSIRRT  562 (582)
Q Consensus       514 ~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~~~  562 (582)
                      ..+..+++|++|++++|+++.....     +......|+.|++.++.+.....+
T Consensus       392 ~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            8888999999999999998843211     112225799999999887754433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.2e-28  Score=236.41  Aligned_cols=287  Identities=22%  Similarity=0.292  Sum_probs=204.3

Q ss_pred             ccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEcc
Q 007984          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (582)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~  261 (582)
                      .+++.++++++.+..+|..+.  ++++.|++++|.+..+ +..+..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            367777887777777776553  6788888888888766 45788888888888888888865 6678888888888888


Q ss_pred             cCcccccchhhhcccccEEEccCCCCCCCCcc-ccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccc
Q 007984          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (582)
Q Consensus       262 ~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (582)
                      +|.+..++.... .+|+++++++|.+..++.. +.++++|++|++++|.+...+                          
T Consensus       111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------  163 (332)
T 2ft3_A          111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG--------------------------  163 (332)
T ss_dssp             SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------------------------
T ss_pred             CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------------------------
Confidence            888887766544 5688888888888877654 778888888888888764211                          


Q ss_pred             cccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCCh
Q 007984          341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD  420 (582)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~  420 (582)
                                                    ..+..+... +|++|++++|.++.+|..+.  ++|++|++++|.+++.+.
T Consensus       164 ------------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          164 ------------------------------FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             ------------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT
T ss_pred             ------------------------------CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH
Confidence                                          011112222 67777777777777765443  567777777777777766


Q ss_pred             HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCC
Q 007984          421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR  500 (582)
Q Consensus       421 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~  500 (582)
                      ..+..+++|++|++++|.+..+....+..+++|++|++++|.++.                       ++..+..+++|+
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------lp~~l~~l~~L~  267 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-----------------------VPAGLPDLKLLQ  267 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-----------------------CCTTGGGCTTCC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-----------------------cChhhhcCccCC
Confidence            666777777777777777777766667777777777777776542                       233455678888


Q ss_pred             EEecCCCcCCccchh-hcC------CCCCCEEeCCCCcCC--cCCCcccccccccceeeccCCC
Q 007984          501 ILDLSQNSLQSIPEG-FKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP  555 (582)
Q Consensus       501 ~L~l~~~~l~~l~~~-~~~------l~~L~~L~l~~n~l~--~l~~~~~~~~~~L~~L~l~~~~  555 (582)
                      .|++++|.++.++.. |..      .+.|+.|++++|.++  .+++..+..+++|+.+++++|+
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888876532 332      366888888888877  6777777777888888888874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.2e-28  Score=236.32  Aligned_cols=280  Identities=21%  Similarity=0.299  Sum_probs=213.7

Q ss_pred             hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhh
Q 007984           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (582)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~   87 (582)
                      .++.++++++.++.+|..+               .+++++|+++++.++.++. .|..+++|++|++++|.+..+ |..+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~---------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC---------------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCeEEEecCCCccccCccC---------------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence            5777888888888888655               3568888888888887764 688888888888888888866 6678


Q ss_pred             hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCC---CCccccccCCCCc
Q 007984           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (582)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~---~i~~~l~~~~~L~  163 (582)
                      ..+++|++|++++|.+..+|..+.  ++|++|++++|.+..++. .+.++++|++|++++|.+.   ..+..+..+++|+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            888888888888888887776554  788888888888886654 5678888888888888775   3455678888888


Q ss_pred             EEEccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCC-cCCcCCCCCcEEEcCCCc
Q 007984          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA  241 (582)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~  241 (582)
                      +|++++|.++.++....   ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus       175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          175 YIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            88888888887765422   7888888888888765 467778888888888888887654 367788888888888888


Q ss_pred             CcccchhhhccCCCcEEEcccCcccccchhhhc--------ccccEEEccCCCCCC---CCccccCCCCCCeEEccCCC
Q 007984          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP  309 (582)
Q Consensus       242 i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--------~~L~~l~l~~~~l~~---~~~~l~~~~~L~~L~l~~~~  309 (582)
                      +..+|..+..+++|++|++++|.++.++...+.        ..++.+++++|.+..   .+..+..+.+++.+++++|+
T Consensus       252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888888888888888888888877655432        337788888887654   33457777888888887763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.7e-30  Score=261.91  Aligned_cols=248  Identities=18%  Similarity=0.222  Sum_probs=179.6

Q ss_pred             hhcCceecCCCCCCCcchH-HHhhhccccCCCccccccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc
Q 007984            9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~   82 (582)
                      +.+++|+++++++...+.. ++..            +++|++|++++|.++     .++..+..+++|++|++++|.+..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            4577889988887754422 2333            778999999999887     456778888999999999988874


Q ss_pred             c-ch-hhhCCC----CCcEEecCCCcCc-----cCChhhhccCCccEEEccCCcCCcC-Cc----c-cccCCCCCeEEcC
Q 007984           83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-PS----S-LGRCLNLSDFKAS  145 (582)
Q Consensus        83 l-~~-~~~~~~----~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~l-~~----~-~~~~~~L~~L~l~  145 (582)
                      . +. ....++    +|++|++++|.+.     .++..+..+++|++|++++|.+... +.    . ....++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            2 22 233444    6999999999887     3466778888999999998887632 11    1 2235679999999


Q ss_pred             CCcCCC-----CccccccCCCCcEEEccCCcccccchhhhc-----ccccCcEEEccCCccCc-----cchhhcCCCCcc
Q 007984          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI  210 (582)
Q Consensus       146 ~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~  210 (582)
                      +|.+..     ++..+..+++|++|++++|.+.+.....+.     ..++|++|++++|.+..     ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            988774     355677788999999998887755444333     25588888888888765     456677788888


Q ss_pred             EEeCCCCcCccC------CcCCcCCCCCcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCccccc
Q 007984          211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEY  268 (582)
Q Consensus       211 ~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~~~  268 (582)
                      +|++++|.+...      +..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+...
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            888888877632      2233457888888888888874     566777788888888888877643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.4e-28  Score=236.22  Aligned_cols=283  Identities=23%  Similarity=0.328  Sum_probs=165.7

Q ss_pred             ccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCC
Q 007984          116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (582)
Q Consensus       116 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~  194 (582)
                      ++.++++++.+..+|..+.  ++++.|++++|.+..++ ..+..+++|++|++++|+++.+.+..++.+++|++|++++|
T Consensus        35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4444444444444443332  34555555555544432 23555555555555555555554444555555555555555


Q ss_pred             ccCccchhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc---ccchhhhccCCCcEEEcccCcccccch
Q 007984          195 LLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYCV  270 (582)
Q Consensus       195 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~---~l~~~l~~~~~L~~L~l~~~~~~~~~~  270 (582)
                      .+..+|..+.  ++|++|++++|.+..++. .+..+++|++|++++|.++   ..+..+..+ +|++|++++|.++.++.
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~  189 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK  189 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred             cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence            5555544333  556666666666555443 3555666666666666554   223344444 66666666666655444


Q ss_pred             hhhcccccEEEccCCCCCCCC-ccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHH
Q 007984          271 EACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI  349 (582)
Q Consensus       271 ~~~~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (582)
                      ... .+++++++++|.+..++ ..+..+++|++|++++|.+..+.                                   
T Consensus       190 ~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----------------------------------  233 (332)
T 2ft3_A          190 DLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----------------------------------  233 (332)
T ss_dssp             SSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------------------------------
T ss_pred             ccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------------------------------
Confidence            322 34666666666666644 34667777777777777653221                                   


Q ss_pred             hhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhC----
Q 007984          350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS----  425 (582)
Q Consensus       350 ~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~----  425 (582)
                                             +..+..+++|++|++++|.++.+|..+..+++|++|++++|.+++++...|..    
T Consensus       234 -----------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          234 -----------------------NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG  290 (332)
T ss_dssp             -----------------------TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred             -----------------------hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence                                   12344567788888888888888777778888888888888887776665554    


Q ss_pred             --CCCCCEeeCCCCCCc--cCCCccccCCCCCcEEeCCCCc
Q 007984          426 --LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       426 --l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                        .++|+.|++++|++.  .+.+.+|..+++|+.+++++|+
T Consensus       291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence              356778888888776  5666667777888888877763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-28  Score=258.65  Aligned_cols=434  Identities=13%  Similarity=0.065  Sum_probs=253.6

Q ss_pred             cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc----c------------cchhhhCCCCCcEEecCCCcCcc-CChhh
Q 007984           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEI  110 (582)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~----~------------l~~~~~~~~~L~~L~l~~~~~~~-l~~~~  110 (582)
                      +.+.+..+.-...+..+.++++|++|+++++...    .            +......+++|++|++++|.+.. .+..+
T Consensus        53 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l  132 (592)
T 3ogk_B           53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL  132 (592)
T ss_dssp             CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence            3444443322233445677888888888775321    1            11223478889999998887652 22333


Q ss_pred             hc-cCC-ccEEEccCCcC-C--cCCcccccCCCCCeEEcCCCcCCC-----CccccccCCCCcEEEccCCcccccc----
Q 007984          111 GS-ATA-LVKFDCSSNQL-K--ELPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLS----  176 (582)
Q Consensus       111 ~~-~~~-L~~L~l~~~~~-~--~l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~----  176 (582)
                      .. +++ |++|++++|.. .  .++....++++|++|++++|.+..     ++.....+++|++|+++++.+..+.    
T Consensus       133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l  212 (592)
T 3ogk_B          133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL  212 (592)
T ss_dssp             HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred             HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence            33 344 88898888762 2  223334578889999998887653     2334567888999999888876333    


Q ss_pred             hhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc----cCCcCCcCCCCCcEEEcCCCcCcccchhhhcc
Q 007984          177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKL  252 (582)
Q Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~  252 (582)
                      ...+..+++|++|++++|.+..++..+..+++|+.|+++.....    .....+..+++|+.+.++++....++..+..+
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~  292 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA  292 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence            22356778899999988888888888888888999988754322    33456677888888888877666777777788


Q ss_pred             CCCcEEEcccCcccccchh---hhcccccEEEccCCCCCC--CCccccCCCCCCeEEccC-C--CCccccccccCCCcHH
Q 007984          253 SKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTG-N--PLRTLRSSLVNGPTPA  324 (582)
Q Consensus       253 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~l~l~~~~l~~--~~~~l~~~~~L~~L~l~~-~--~~~~~~~~~~~~~~~~  324 (582)
                      ++|++|++++|.++.....   ....+|+.|+++++ +..  ++.....+++|++|++++ .  +...   ..       
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~---~~-------  361 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGME---DE-------  361 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTS---ST-------
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccc---cc-------
Confidence            8888888888775432221   11222444444311 111  111123344444444441 0  0000   00       


Q ss_pred             HHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc--cCChhhhccCCccEEEcCCCcCCc-CCcccc-
Q 007984          325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELS-  400 (582)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~-  400 (582)
                                                               .+.++  .+......+++|++|+++.+.+++ .+..++ 
T Consensus       362 -----------------------------------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          362 -----------------------------------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             -----------------------------------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             -----------------------------------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence                                                     01111  111122235677777776666554 222233 


Q ss_pred             CCCCCCEEEcc----cCcCCCCCh-----HHhhCCCCCCEeeCCCCC--CccCCCccc-cCCCCCcEEeCCCCcCCCCCC
Q 007984          401 SCASLQTLILS----RNKIKDWPD-----AILTSLSSLSCLKLDNNP--LRQVPSDGF-KDIPMLQILDLSYNIASLPEN  468 (582)
Q Consensus       401 ~~~~L~~L~l~----~~~l~~~~~-----~~l~~l~~L~~L~l~~~~--l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~  468 (582)
                      .+++|++|+++    .+.+++.+.     ..+.++++|++|++++|.  +++.....+ ..+++|++|++++|.+++.  
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--  478 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE--  478 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH--
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH--
Confidence            36677777775    445555421     224557777777776543  333211112 3366677777776654321  


Q ss_pred             CCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCc--cchhhcCCCCCCEEeCCCCcCCcCCC-cccccccc
Q 007984          469 PPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPP-ELGLLEPS  545 (582)
Q Consensus       469 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~~  545 (582)
                                         .++..+..+++|++|++++|.++.  ++.....+++|++|++++|+++.... .+...+|.
T Consensus       479 -------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~  539 (592)
T 3ogk_B          479 -------------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY  539 (592)
T ss_dssp             -------------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred             -------------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence                               112334567888888888888762  44445678888889998888774322 23334466


Q ss_pred             cceeeccCC
Q 007984          546 LQALRLDGN  554 (582)
Q Consensus       546 L~~L~l~~~  554 (582)
                      +....+..+
T Consensus       540 l~~~~~~~~  548 (592)
T 3ogk_B          540 WNIELIPSR  548 (592)
T ss_dssp             EEEEEECCC
T ss_pred             cEEEEecCc
Confidence            766666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.9e-25  Score=230.23  Aligned_cols=259  Identities=30%  Similarity=0.373  Sum_probs=230.2

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~   88 (582)
                      ..++.++++++.++.+|..+               .++|++|++++|.++.+|.   .+++|++|+|++|.++.+|.   
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l---------------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCL---------------PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCC---------------CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred             CCCcEEEecCCCcCccChhh---------------CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence            35889999999999999866               3689999999999998876   57899999999999999877   


Q ss_pred             CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~  168 (582)
                      .+++|++|++++|.+..+|.   .+++|++|++++|.++.+|..   +++|++|++++|.+..++.   ..++|+.|+++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~  169 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY  169 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred             CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence            78999999999999999877   678999999999999988864   4899999999999998875   35789999999


Q ss_pred             CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (582)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~  248 (582)
                      +|.++.++    ..+++|+.|++++|.+..++..   .++|+.|++++|.+..++..   +++|+.|++++|.++.+|  
T Consensus       170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred             CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence            99999877    4578999999999999988753   47999999999999988754   488999999999999988  


Q ss_pred             hhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (582)
Q Consensus       249 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~  312 (582)
                       ..+++|++|++++|.++.++.  ...+|+.|++++|.++.+|..+..+++|+.|++++|+++.
T Consensus       238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence             456899999999999998877  5567999999999999999999999999999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=9.2e-28  Score=253.06  Aligned_cols=414  Identities=15%  Similarity=0.107  Sum_probs=217.2

Q ss_pred             EEEcCCCCCcccchhhhCCCCCcEEecCCCcCc----cCChh------------hhccCCccEEEccCCcCCcC-Ccccc
Q 007984           72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM----KIPDE------------IGSATALVKFDCSSNQLKEL-PSSLG  134 (582)
Q Consensus        72 ~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----~l~~~------------~~~~~~L~~L~l~~~~~~~l-~~~~~  134 (582)
                      .+.+.++.-...+..+..+++|++|+++++...    .+|..            ...+++|++|++++|.+... +..+.
T Consensus        54 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~  133 (592)
T 3ogk_B           54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA  133 (592)
T ss_dssp             EEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred             EEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH
Confidence            344444322233345677888999999775321    11211            12566777777776655421 12222


Q ss_pred             c-CCC-CCeEEcCCCcC-C--CCccccccCCCCcEEEccCCcccccch----hhhcccccCcEEEccCCccCc-----cc
Q 007984          135 R-CLN-LSDFKASNNCI-T--SLPEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNG-----MP  200 (582)
Q Consensus       135 ~-~~~-L~~L~l~~~~~-~--~i~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~-----~~  200 (582)
                      . +++ |++|++++|.. .  .++.....+++|++|++++|.+.+.+.    .....+++|++|+++++.+..     ++
T Consensus       134 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  213 (592)
T 3ogk_B          134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE  213 (592)
T ss_dssp             HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred             HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence            2 233 66666666641 1  122223355666666666665543321    123445555555555555431     22


Q ss_pred             hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc----ccchhhhccCCCcEEEcccCcccccchhhhccc
Q 007984          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR  276 (582)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  276 (582)
                      ..+..+++|+.|++++|.+..++..+..+++|++|.++.....    ..+..+..+++|+.+++                
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l----------------  277 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL----------------  277 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE----------------
T ss_pred             HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc----------------
Confidence            2334455555555555555444444444555555555432111    11223334444444444                


Q ss_pred             ccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhccc
Q 007984          277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS  356 (582)
Q Consensus       277 L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (582)
                            +++....++..+..+++|++|++++|.+....                                  ........
T Consensus       278 ------~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~----------------------------------~~~~~~~~  317 (592)
T 3ogk_B          278 ------SYMGPNEMPILFPFAAQIRKLDLLYALLETED----------------------------------HCTLIQKC  317 (592)
T ss_dssp             ------TTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH----------------------------------HHHHHTTC
T ss_pred             ------cccchhHHHHHHhhcCCCcEEecCCCcCCHHH----------------------------------HHHHHHhC
Confidence                  44333334444455555555555555432100                                  00001112


Q ss_pred             ccccEEEecCCCCc-cCChhhhccCCccEEEcCC-----------CcCCc--CCccccCCCCCCEEEcccCcCCCCChHH
Q 007984          357 VTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR-----------NSIQE--LPPELSSCASLQTLILSRNKIKDWPDAI  422 (582)
Q Consensus       357 ~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~-----------~~l~~--l~~~l~~~~~L~~L~l~~~~l~~~~~~~  422 (582)
                      .+++.+++.++... .++.....+++|++|++++           +.++.  +......+++|++|+++.+.+++.....
T Consensus       318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            23333333311101 1222223466777777773           34433  2223345777888888777776654444


Q ss_pred             hhC-CCCCCEeeCC----CCCCccCCCc-----cccCCCCCcEEeCCCCc--CCCCCCCCCCCCccchhhhhccccccCc
Q 007984          423 LTS-LSSLSCLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPFSSLPHLQELYLRMQLREAP  490 (582)
Q Consensus       423 l~~-l~~L~~L~l~----~~~l~~~~~~-----~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~L~~L~l~~~~~~~~  490 (582)
                      +.. +++|++|+++    .+.+++.+..     .+..+++|++|+++.|.  +++                      ...
T Consensus       398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~----------------------~~~  455 (592)
T 3ogk_B          398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD----------------------LGL  455 (592)
T ss_dssp             HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH----------------------HHH
T ss_pred             HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH----------------------HHH
Confidence            544 7778888775    4455543211     14456777777776432  111                      111


Q ss_pred             hh-hhccCCCCEEecCCCcCCc--cchhhcCCCCCCEEeCCCCcCCcC-CCcccccccccceeeccCCCCCcchHHH
Q 007984          491 TD-ILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGNPLRSIRRTI  563 (582)
Q Consensus       491 ~~-~~~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~~L~~L~l~~~~~~~~~~~~  563 (582)
                      .. ...+++|+.|++++|.++.  ++..+.++++|++|++++|+++.. .......+++|+.|++++|+++..+...
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~  532 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL  532 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence            12 2347899999999999874  556678899999999999998732 2233344599999999999987754433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=7.2e-25  Score=227.27  Aligned_cols=117  Identities=28%  Similarity=0.338  Sum_probs=69.9

Q ss_pred             cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC
Q 007984           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (582)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  124 (582)
                      .++++|+++++.++.+|..+.  ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            356677777776666665443  566677776666666654   45666666666666666654   4566666666666


Q ss_pred             cCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCccccc
Q 007984          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL  175 (582)
Q Consensus       125 ~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~  175 (582)
                      .++.+|.   .+++|+.|++++|.+..+|..   +++|++|++++|+++.+
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC
T ss_pred             cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCc
Confidence            6665554   345566666666655555442   24555555555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.4e-25  Score=215.20  Aligned_cols=242  Identities=25%  Similarity=0.342  Sum_probs=200.8

Q ss_pred             cCccEEEcCCCCcc---chhHhhcCCCCCcEEEcCC-CCCc-ccchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccE
Q 007984           45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (582)
Q Consensus        45 ~~l~~L~l~~~~i~---~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~  118 (582)
                      .++++|+++++.+.   .+|..+.++++|++|++++ +.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57899999999888   5788899999999999995 7776 67888999999999999999988 77888999999999


Q ss_pred             EEccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCC-CCcEEEccCCcccccchhhhcccccCcEEEccCCc
Q 007984          119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (582)
Q Consensus       119 L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  195 (582)
                      |++++|.+. .+|..+.++++|++|++++|.+. .+|..+..++ +|++|++++|++....+..+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999988 67888889999999999999988 7888888887 899999999988866666677776 9999999998


Q ss_pred             cC-ccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccccchhhh
Q 007984          196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (582)
Q Consensus       196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~  273 (582)
                      +. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++.     
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----  283 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-----  283 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-----
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-----
Confidence            86 4566788888999999999888865556778888999999988888 7788888888888888888877632     


Q ss_pred             cccccEEEccCCCCCCCCccccCCCCCCeEEccCCC
Q 007984          274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (582)
Q Consensus       274 ~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~  309 (582)
                                      +|. ...+++|+.+++++|+
T Consensus       284 ----------------ip~-~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          284 ----------------IPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ----------------CCC-STTGGGSCGGGTCSSS
T ss_pred             ----------------CCC-CccccccChHHhcCCC
Confidence                            222 2456677777777776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=219.18  Aligned_cols=266  Identities=20%  Similarity=0.294  Sum_probs=194.4

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAA   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~   86 (582)
                      +....++++++.++.+|..+               .++|++|+++++.++.++. .|..+++|++|++++|.++.+ +..
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~---------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS   95 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTC---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCeEeeCCCCCcccccccc---------------cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence            44556788888888888766               3568888888888887765 688888888888888888866 446


Q ss_pred             hhCCCCCcEEecCCCcCccCChh-hhccCCccEEEccCCcCCcCCc--ccccCCCCCeEEcCCC-cCCCC-ccccccCCC
Q 007984           87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSK  161 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~-~~~~i-~~~l~~~~~  161 (582)
                      +..+++|++|++++|.+..++.. +..+++|++|++++|.+..++.  .+.++++|++|++++| .+..+ +..+..+++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            88888888888888888888765 7788888888888888887765  6778888888888888 35555 345778888


Q ss_pred             CcEEEccCCcccccchhhhcccccCcEEEccCCccCccchh-hcCCCCccEEeCCCCcCccCCc----CCcCCCCCcEEE
Q 007984          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY  236 (582)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~  236 (582)
                      |++|++++|.+..+.+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+..++.    ....+..++.++
T Consensus       176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence            88888888888877777788888888888888888776654 3347788888888887775431    122344555566


Q ss_pred             cCCCcCc-----ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCcc-ccCCCCCCeEEccCCCC
Q 007984          237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPL  310 (582)
Q Consensus       237 l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~  310 (582)
                      ++++.+.     .+|..+..+++|++|++++|.                      ++.++.. +..+++|++|++++|++
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~----------------------l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQ----------------------LKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCC----------------------CCccCHHHHhcCCCCCEEEeeCCCc
Confidence            5555544     234445555555555555554                      4445544 47788899999999887


Q ss_pred             c
Q 007984          311 R  311 (582)
Q Consensus       311 ~  311 (582)
                      .
T Consensus       314 ~  314 (353)
T 2z80_A          314 D  314 (353)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=8.8e-26  Score=216.63  Aligned_cols=241  Identities=24%  Similarity=0.365  Sum_probs=215.6

Q ss_pred             hhcCceecCCCCCC---CcchHHHhhhccccCCCccccccCccEEEcCC-CCcc-chhHhhcCCCCCcEEEcCCCCCc-c
Q 007984            9 RTSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLS-E   82 (582)
Q Consensus         9 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~-~~i~-~~~~~~~~~~~L~~L~L~~~~~~-~   82 (582)
                      ..++.|+++++.+.   .+|..+.             .+++|++|++++ +.+. .+|..|..+++|++|++++|.+. .
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~-------------~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA-------------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG-------------GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             ceEEEEECCCCCccCCcccChhHh-------------CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence            45778888888877   4665443             389999999995 7777 67889999999999999999998 7


Q ss_pred             cchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCcCC-cCCcccccCC-CCCeEEcCCCcCC-CCcccccc
Q 007984           83 LPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD  158 (582)
Q Consensus        83 l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~l~~~~~~-~i~~~l~~  158 (582)
                      +|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+. .++..+..
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence            8889999999999999999998 67889999999999999999998 8888899988 9999999999998 77888888


Q ss_pred             CCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEc
Q 007984          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM  237 (582)
Q Consensus       159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l  237 (582)
                      ++ |++|++++|.+....+..+..+++|+.|++++|.+...+..+..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence            87 99999999999988888899999999999999999876666888999999999999998 78889999999999999


Q ss_pred             CCCcCc-ccchhhhccCCCcEEEcccCc
Q 007984          238 GNNALS-ALPAELGKLSKLGTLDLHSNQ  264 (582)
Q Consensus       238 ~~~~i~-~l~~~l~~~~~L~~L~l~~~~  264 (582)
                      ++|.+. .+|.. ..+++|+.+++.+|.
T Consensus       276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          276 SFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCCcccccCCCC-ccccccChHHhcCCC
Confidence            999999 66654 788999999999887

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3e-25  Score=214.19  Aligned_cols=223  Identities=21%  Similarity=0.270  Sum_probs=184.3

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      ..++++|+++++.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            36888999999988888888888899999999999888888888889999999999998888888888899999999988


Q ss_pred             CcCC-cCCcccc---------cCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccC
Q 007984          124 NQLK-ELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (582)
Q Consensus       124 ~~~~-~l~~~~~---------~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  193 (582)
                      |.+. .+|..+.         ++++|++|++++|.+..+|..+..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRG  238 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcC
Confidence            6543 6665544         48889999999888888888888888999999988888877664 88888889999888


Q ss_pred             Ccc-CccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccc
Q 007984          194 NLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       194 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~  267 (582)
                      |.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+.+..
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            765 456777888888999999887655 67778888888889998887665 788888888888888887765544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=219.93  Aligned_cols=277  Identities=19%  Similarity=0.245  Sum_probs=160.0

Q ss_pred             cccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEc
Q 007984          183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDL  260 (582)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l  260 (582)
                      |+.....+.+++.++.+|..+.  ++|+.|++++|.+..++. .+..+++|++|++++|.++.+ +..+..+++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            4444455666666666665443  466666666666665543 566666666666666666644 334556666666666


Q ss_pred             ccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccc
Q 007984          261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (582)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (582)
                      ++|.++.++...                     +.++++|++|++++|.+..++.                         
T Consensus       108 s~n~l~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~l~~-------------------------  141 (353)
T 2z80_A          108 SYNYLSNLSSSW---------------------FKPLSSLTFLNLLGNPYKTLGE-------------------------  141 (353)
T ss_dssp             CSSCCSSCCHHH---------------------HTTCTTCSEEECTTCCCSSSCS-------------------------
T ss_pred             CCCcCCcCCHhH---------------------hCCCccCCEEECCCCCCcccCc-------------------------
Confidence            665555443321                     4445555555555554432210                         


Q ss_pred             cccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCC-cCCcCC-ccccCCCCCCEEEcccCcCCCC
Q 007984          341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELP-PELSSCASLQTLILSRNKIKDW  418 (582)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~-~~l~~~~~L~~L~l~~~~l~~~  418 (582)
                                                      ...+..+++|++|++++| .+..++ ..+..+++|++|++++|.+++.
T Consensus       142 --------------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          142 --------------------------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             --------------------------------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             --------------------------------hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence                                            001223445555555555 244432 2455556666666666666555


Q ss_pred             ChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCC
Q 007984          419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQ  498 (582)
Q Consensus       419 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  498 (582)
                      .+..+..+++|++|++++|.+..++...+..+++|+.|++++|.+++.....+..                   ....+.
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~~~~~~  250 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------------------GETNSL  250 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCCC
T ss_pred             CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------------ccccch
Confidence            4555566666666666666655554443445566666666666655443221111                   112344


Q ss_pred             CCEEecCCCcCC-----ccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          499 LRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       499 L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      ++.+++.++.+.     .+|..+.++++|++|++++|+++.+|..++..+++|++|++++|++..
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            555555555544     467778888889999999998888888877667889999999998765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=4e-25  Score=212.06  Aligned_cols=240  Identities=23%  Similarity=0.282  Sum_probs=155.3

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc---chhh
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI   87 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l---~~~~   87 (582)
                      ..+++++..++.+|..+               .+++++|+++++.++.++. .|.++++|++|++++|.+..+   +..+
T Consensus        10 ~~l~c~~~~l~~ip~~~---------------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CEEEcCCCCcccCCCCC---------------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence            45777777777777655               3467888888877777765 467777888888877777644   4566


Q ss_pred             hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc--ccccCCCCCeEEcCCCcCCC-CccccccCCCCcE
Q 007984           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITS-LPEDLADCSKMSK  164 (582)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~L~~  164 (582)
                      ..+++|++|++++|.+..++..+..+++|++|++++|.+..++.  .+.++++|++|++++|.+.. .+..+..+++|++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            66777777777777777776667777777777777777766543  56667777777777776653 3344666677777


Q ss_pred             EEccCCcccc-cchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCc
Q 007984          165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (582)
Q Consensus       165 L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  241 (582)
                      |++++|.+.. ..+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            7777666654 3333466666666666666666554 3455566666666666666655432 45556666666666666


Q ss_pred             Ccc-cchhhhcc-CCCcEEEcccCccc
Q 007984          242 LSA-LPAELGKL-SKLGTLDLHSNQLK  266 (582)
Q Consensus       242 i~~-l~~~l~~~-~~L~~L~l~~~~~~  266 (582)
                      +.. .+..+..+ ++|++|++++|.+.
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCee
Confidence            653 23444444 25666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=4.4e-25  Score=211.77  Aligned_cols=245  Identities=25%  Similarity=0.294  Sum_probs=157.0

Q ss_pred             EEEcccCcccccchhhhcccccEEEccCCCCCCCCcc-ccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCC
Q 007984          257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE  335 (582)
Q Consensus       257 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (582)
                      .++.+++.++.++... +.+++++++++|.+..++.. +..+++|++|++++|.+..++                     
T Consensus        11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------------   68 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG---------------------   68 (306)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---------------------
T ss_pred             EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---------------------
Confidence            3444444444444322 23456666666666665554 567788888888887764221                     


Q ss_pred             CCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcC
Q 007984          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI  415 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l  415 (582)
                                                         ..+..+..+++|++|++++|.+..++..+..+++|++|++++|.+
T Consensus        69 -----------------------------------~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l  113 (306)
T 2z66_A           69 -----------------------------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL  113 (306)
T ss_dssp             -----------------------------------EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred             -----------------------------------CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence                                               112233345566666666666666555566666666666666666


Q ss_pred             CCCCh-HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCC-CCCCCCCCCccchhhhh-ccccccC-ch
Q 007984          416 KDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYL-RMQLREA-PT  491 (582)
Q Consensus       416 ~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l-~~~~~~~-~~  491 (582)
                      ++++. ..+..+++|++|++++|.+..+....+..+++|++|++++|.+.+ ..+..+..+++|++|++ .+.+... +.
T Consensus       114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  193 (306)
T 2z66_A          114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  193 (306)
T ss_dssp             ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence            55543 345566666666666666665555556666666666666666554 33445666666666666 4444443 44


Q ss_pred             hhhccCCCCEEecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCcccccc-cccceeeccCCCCCc
Q 007984          492 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRS  558 (582)
Q Consensus       492 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~-~~L~~L~l~~~~~~~  558 (582)
                      .+..+++|+.|++++|.++.++. .+..+++|++|++++|++++.++..+... ++|+.|++++|++..
T Consensus       194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            66778899999999999997754 58889999999999999987666544444 599999999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4.6e-27  Score=247.87  Aligned_cols=169  Identities=12%  Similarity=0.137  Sum_probs=87.6

Q ss_pred             cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc-cc---------------chhhhCCCCCcEEecCCCcCccC-Chhh
Q 007984           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-EL---------------PAAIGELHMLKSLDVSFNSIMKI-PDEI  110 (582)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~-~l---------------~~~~~~~~~L~~L~l~~~~~~~l-~~~~  110 (582)
                      +.+++..+........+.++++|++|+++++... .+               ......+++|++|++++|.+... +..+
T Consensus        46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l  125 (594)
T 2p1m_B           46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI  125 (594)
T ss_dssp             CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence            4555554433322334556667777777665411 11               11234566677777776665521 2223


Q ss_pred             h-ccCCccEEEccCC-cCCc--CCcccccCCCCCeEEcCCCcCCC-----CccccccCCCCcEEEccCCcccccchhh--
Q 007984          111 G-SATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL--  179 (582)
Q Consensus       111 ~-~~~~L~~L~l~~~-~~~~--l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~--  179 (582)
                      . .+++|++|++++| .+..  ++....++++|++|++++|.+..     ++.....+++|++|+++++. ..+....  
T Consensus       126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~  204 (594)
T 2p1m_B          126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALE  204 (594)
T ss_dssp             HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred             HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence            2 4667777777666 3332  33334466677777777666442     22223355667777776664 2121111  


Q ss_pred             --hcccccCcEEEccCC-ccCccchhhcCCCCccEEeCCCC
Q 007984          180 --IASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQN  217 (582)
Q Consensus       180 --~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~  217 (582)
                        ...+++|++|++++| .+..++..+..+++|+.|++..+
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence              233466666666665 33334455555666666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.9e-25  Score=213.38  Aligned_cols=224  Identities=21%  Similarity=0.314  Sum_probs=202.2

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~   88 (582)
                      +.+..|+++++.++.+|..+..             +++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred             cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence            7899999999999999987754             789999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEecCCCcC-ccCChhhh---------ccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCcccccc
Q 007984           89 ELHMLKSLDVSFNSI-MKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD  158 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~-~~l~~~~~---------~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~  158 (582)
                      .+++|++|++++|.+ ..+|..+.         ++++|++|++++|.++.+|..+.++++|++|++++|.+..++..+..
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            999999999999754 46676654         49999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEccCCcccccchhhhcccccCcEEEccCCcc-CccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEE
Q 007984          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY  236 (582)
Q Consensus       159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~  236 (582)
                      +++|++|++++|++....+..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.+.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            99999999999988877666799999999999999865 667888999999999999998765 7899999999999999


Q ss_pred             cCCCcCccc
Q 007984          237 MGNNALSAL  245 (582)
Q Consensus       237 l~~~~i~~l  245 (582)
                      +..+.+..+
T Consensus       308 l~~~~~~~l  316 (328)
T 4fcg_A          308 VPPHLQAQL  316 (328)
T ss_dssp             CCGGGSCC-
T ss_pred             CCHHHHHHH
Confidence            987665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=9.1e-25  Score=207.20  Aligned_cols=217  Identities=23%  Similarity=0.374  Sum_probs=132.0

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l-~~~~~~   89 (582)
                      ..+++++..++.+|..+               .+++++|+++++.++.++ ..|..+++|++|+++++.+..+ +..+..
T Consensus        14 ~~~~c~~~~l~~ip~~~---------------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCcCCcccCCcCC---------------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            45677777777777654               346777777777777665 3577777777777777777755 456777


Q ss_pred             CCCCcEEecCCCc-CccC-ChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCCccc-cccCCCCcEE
Q 007984           90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L  165 (582)
                      +++|++|++++|. +..+ +..+..+++|++|++++|.+..+ +..+.++++|++|++++|.+..++.. +..+++|++|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            7777777777775 6655 45566677777777777776655 34456666666666666666655433 5566666666


Q ss_pred             EccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc
Q 007984          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~  243 (582)
                      ++++|+++.+....+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            6666666655555455555555555555555443 3344444555555555554444332 2344444444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.2e-26  Score=242.63  Aligned_cols=219  Identities=15%  Similarity=0.175  Sum_probs=153.4

Q ss_pred             ccCccEEEcCCCCcc-c---------------hhHhhcCCCCCcEEEcCCCCCcc-cchhhh-CCCCCcEEecCCC-cCc
Q 007984           44 AVDLQKLILAHNNIE-K---------------LKEDLRNLPLLTVLNVSHNKLSE-LPAAIG-ELHMLKSLDVSFN-SIM  104 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~-~---------------~~~~~~~~~~L~~L~L~~~~~~~-l~~~~~-~~~~L~~L~l~~~-~~~  104 (582)
                      +++|++|+++++... .               ++.....+++|++|+++++.++. .+..+. .+++|++|++++| .+.
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            678999999887521 1               12234578899999999998773 233443 6899999999988 555


Q ss_pred             c--CChhhhccCCccEEEccCCcCCc-----CCcccccCCCCCeEEcCCCc--CC--CCccccccCCCCcEEEccCC-cc
Q 007984          105 K--IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNC--IT--SLPEDLADCSKMSKLDVEGN-KL  172 (582)
Q Consensus       105 ~--l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~--~~--~i~~~l~~~~~L~~L~l~~~-~i  172 (582)
                      .  ++..+.++++|++|++++|.+..     ++.....+++|++|++++|.  +.  .+......+++|++|++++| .+
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            3  45556689999999999988663     23334477899999999886  21  22222456799999999887 44


Q ss_pred             cccchhhhcccccCcEEEccCCc-------cCccchhhcCCCCccEE-eCCCCcCccCCcCCcCCCCCcEEEcCCCcCcc
Q 007984          173 TVLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRL-DLHQNRILSIPSSISGCCSLAEFYMGNNALSA  244 (582)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~  244 (582)
                      ..+ ...+..+++|+++.+..+.       +..++..+..+++|+.+ .+.+.....++..+..+++|++|++++|.+..
T Consensus       225 ~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          225 EKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HHH-HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence            443 3347788999999866553       33455577888899988 55544444455555567888888888888662


Q ss_pred             --cchhhhccCCCcEEEcccC
Q 007984          245 --LPAELGKLSKLGTLDLHSN  263 (582)
Q Consensus       245 --l~~~l~~~~~L~~L~l~~~  263 (582)
                        +...+..+++|++|+++++
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHHHhcCCCcCEEeCcCc
Confidence              3344567888888888877

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=6e-24  Score=201.53  Aligned_cols=221  Identities=23%  Similarity=0.303  Sum_probs=196.9

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEccC
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~  123 (582)
                      .-++++.++..++.+|..+  .++|++|+++++.++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        12 ~~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           12 PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SSCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            3478999999999888654  4799999999999998764 789999999999999999976 66789999999999999


Q ss_pred             Cc-CCcC-CcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984          124 NQ-LKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       124 ~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (582)
                      |. +..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|+++.+....++.+++|++|++++|.+..++
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            97 8777 56788999999999999999977 456889999999999999999998888999999999999999998877


Q ss_pred             h-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccch-hhhccCCCcEEEcccCccccc
Q 007984          201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEY  268 (582)
Q Consensus       201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~~-~l~~~~~L~~L~l~~~~~~~~  268 (582)
                      . .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+...
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            5 588899999999999999865 7889999999999999999998764 588999999999999988743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=212.08  Aligned_cols=193  Identities=26%  Similarity=0.363  Sum_probs=130.6

Q ss_pred             cCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC-CCCccCCCccccCCCCCcEE
Q 007984          379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQIL  456 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L  456 (582)
                      +++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++ +.+..+....|..+++|++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            4556666666666655544 455566666666666666655555556666666666665 33444555555666666666


Q ss_pred             eCCCCcCCCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCC
Q 007984          457 DLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNIS  533 (582)
Q Consensus       457 ~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~  533 (582)
                      ++++|.++.+.  .+..+++|++|++ .+.+..+ +..+..+++|+.|++++|+++.++ ..|.++++|++|+|++|+++
T Consensus       191 ~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          191 NLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             ECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            66666655443  2555666666666 4444433 446677899999999999999774 56889999999999999999


Q ss_pred             cCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHhcC
Q 007984          534 ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI  579 (582)
Q Consensus       534 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (582)
                      +++...+..+++|+.|++++|++..      +........|+++..
T Consensus       269 ~~~~~~~~~l~~L~~L~L~~Np~~C------dC~l~~l~~~~~~~~  308 (440)
T 3zyj_A          269 LLPHDLFTPLHHLERIHLHHNPWNC------NCDILWLSWWIKDMA  308 (440)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCEEC------SSTTHHHHHHHHTTS
T ss_pred             ccChhHhccccCCCEEEcCCCCccC------CCCchHHHHHHHhcc
Confidence            9999888888999999999999863      444555555666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.3e-23  Score=212.77  Aligned_cols=194  Identities=25%  Similarity=0.327  Sum_probs=141.7

Q ss_pred             hccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC-CCCccCCCccccCCCCCc
Q 007984          377 WEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQ  454 (582)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~  454 (582)
                      ..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++ +.+..++...|..+++|+
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK  199 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred             cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence            345667777777777766654 366677777777777777766666667777777777776 445556665667777777


Q ss_pred             EEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCc
Q 007984          455 ILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNN  531 (582)
Q Consensus       455 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~  531 (582)
                      +|++++|.++++.  .+..+++|++|++ .+.+..+ +..+..+++|+.|++++|.++.+ +..|.++++|++|+|++|+
T Consensus       200 ~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          200 YLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             EEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            7777777776553  3666777777777 4444444 55678899999999999999977 4568999999999999999


Q ss_pred             CCcCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHhc
Q 007984          532 ISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK  578 (582)
Q Consensus       532 l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (582)
                      ++++|...+..+++|+.|++++|++..      +........|+++.
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~Np~~C------dC~~~~l~~~l~~~  318 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVELHLHHNPWNC------DCDILWLAWWLREY  318 (452)
T ss_dssp             CSCCCTTSSTTCTTCCEEECCSSCEEC------STTTHHHHHHHHHH
T ss_pred             CCccChHHhccccCCCEEEccCCCcCC------CCCchHHHHHHHHh
Confidence            999999888878999999999999763      33334444455544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=211.99  Aligned_cols=238  Identities=24%  Similarity=0.365  Sum_probs=159.3

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccc-hhhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~-~~~~~   89 (582)
                      ..+++++..++.+|..+               .++++.|+++++.++.++ ..|..+++|++|+|++|.+..++ ..|..
T Consensus        46 ~~v~c~~~~l~~iP~~~---------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  110 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG  110 (440)
T ss_dssp             CEEECCSCCCSSCCSCC---------------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred             CEEEeCCCCcCcCCCCC---------------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence            45667777777777655               346777777777777664 46777777777777777777554 46777


Q ss_pred             CCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCC-cCCCCcc-ccccCCCCcEE
Q 007984           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~-~~~~i~~-~l~~~~~L~~L  165 (582)
                      +++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+.++++|++|++++| .+..++. .|..+++|++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            7777777777777776654 46677777777777777775543 5666777777777764 3444433 46667777777


Q ss_pred             EccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCc
Q 007984          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      ++++|+++.++.  +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++
T Consensus       191 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          191 NLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             ECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            777777766653  66667777777777766654 45566667777777777776644 445666777777777777776


Q ss_pred             ccch-hhhccCCCcEEEcccCccc
Q 007984          244 ALPA-ELGKLSKLGTLDLHSNQLK  266 (582)
Q Consensus       244 ~l~~-~l~~~~~L~~L~l~~~~~~  266 (582)
                      .++. .+..+++|+.|++++|.+.
T Consensus       269 ~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          269 LLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccChhHhccccCCCEEEcCCCCcc
Confidence            5543 3456667777777766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.6e-23  Score=212.32  Aligned_cols=238  Identities=24%  Similarity=0.347  Sum_probs=175.0

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccc-hhhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~   89 (582)
                      ..+++++..++.+|..+               .+++++|+++++.++.+ ++.|..+++|++|+|++|.+..++ ..|..
T Consensus        57 ~~v~c~~~~l~~iP~~~---------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGI---------------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             CEEECCSSCCSSCCSCC---------------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cEEEECCCCcCccCCCC---------------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence            56777777777777655               35688888888888766 456788888888888888877664 57777


Q ss_pred             CCCCcEEecCCCcCccCChh-hhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCC-cCCCCcc-ccccCCCCcEE
Q 007984           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~-~~~~i~~-~l~~~~~L~~L  165 (582)
                      +++|++|++++|.+..++.. +..+++|++|++++|.+..++. .+.++++|+.|++++| .+..++. .+..+++|++|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            88888888888888777544 6778888888888888776654 5677888888888874 4444443 47777888888


Q ss_pred             EccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCc
Q 007984          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      ++++|+++.++.  +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++
T Consensus       202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            888887777653  67777888888888877665 45677777888888888877754 456777778888888888777


Q ss_pred             ccch-hhhccCCCcEEEcccCccc
Q 007984          244 ALPA-ELGKLSKLGTLDLHSNQLK  266 (582)
Q Consensus       244 ~l~~-~l~~~~~L~~L~l~~~~~~  266 (582)
                      .++. .+..+++|++|++++|.+.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccChHHhccccCCCEEEccCCCcC
Confidence            6653 3566777778877777655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.6e-24  Score=208.05  Aligned_cols=242  Identities=16%  Similarity=0.150  Sum_probs=119.2

Q ss_pred             ccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc--ccchhhh-------CCCCCcEEecCCCcCc-cCChhh-
Q 007984           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPDEI-  110 (582)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~~~-~l~~~~-  110 (582)
                      ...++|++++++++.+ .+|..+...  |+.|+++++.+.  .++..+.       .+++|++|++++|.+. .+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            3344455555555555 444433322  555555555543  2333332       4555555555555554 334433 


Q ss_pred             -hccCCccEEEccCCcCCcCCcccccC-----CCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCccccc----chhh
Q 007984          111 -GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL----SNNL  179 (582)
Q Consensus       111 -~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~----~~~~  179 (582)
                       ..+++|++|++++|.+..+|..+..+     ++|++|++++|.+..++ ..+..+++|++|++++|++...    ....
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence             45555555555555555444444443     55555555555555443 3455555555555555553321    1111


Q ss_pred             hcccccCcEEEccCCccCccc----hhhcCCCCccEEeCCCCcCccCC--cCCcCCCCCcEEEcCCCcCcccchhhhccC
Q 007984          180 IASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELGKLS  253 (582)
Q Consensus       180 ~~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~  253 (582)
                      +..+++|++|++++|.+..++    ..+..+++|+.|++++|.+...+  ..+..+++|++|++++|.++.+|..+.  +
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence            245555555555555554322    12234455555555555555432  233445556666666665555555444  5


Q ss_pred             CCcEEEcccCcccccchhhhcccccEEEccCCCCC
Q 007984          254 KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS  288 (582)
Q Consensus       254 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~  288 (582)
                      +|++|++++|+++.++......+|+++++++|.++
T Consensus       275 ~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred             CceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence            56666666665555544222333556666665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.5e-24  Score=206.16  Aligned_cols=215  Identities=22%  Similarity=0.297  Sum_probs=127.3

Q ss_pred             ccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984           44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (582)
                      +++|++|++++|.++.++ ..|..+++|++|++++|.+..++. +..+++|++|++++|.+..++    ..++|++|+++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence            456677777777666553 466666777777777766665443 666666777777666665443    23666666666


Q ss_pred             CCcCCcCCcccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEEEccCCcccccchhhh-cccccCcEEEccCCccCccc
Q 007984          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLI-ASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       123 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~  200 (582)
                      +|.+..++.  ..+++|++|++++|.+..++. .+..+++|++|++++|.+..+....+ ..+++|++|++++|.+..++
T Consensus       108 ~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            666664432  224566666666666665533 45556666666666666665544433 24566666666666665543


Q ss_pred             hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCccc
Q 007984          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (582)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~  266 (582)
                      .. ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus       186 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          186 GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            22 235566666666666665555555556666666666666655555555556666666655554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=3.3e-24  Score=206.36  Aligned_cols=239  Identities=18%  Similarity=0.214  Sum_probs=207.6

Q ss_pred             HHHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc
Q 007984            4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (582)
Q Consensus         4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l   83 (582)
                      +.+..++++.|+++++.++.++...+..            +++|++|++++|.++.++. +..+++|++|++++|.++.+
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l   95 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL   95 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTT------------CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhC------------CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc
Confidence            3445578999999999999988766554            7889999999999987654 89999999999999998876


Q ss_pred             chhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCCCc-ccc-ccCC
Q 007984           84 PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDL-ADCS  160 (582)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~-~~l-~~~~  160 (582)
                      +    ..++|++|++++|.+..++.  ..+++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+ ..++
T Consensus        96 ~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  169 (317)
T 3o53_A           96 L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD  169 (317)
T ss_dssp             E----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred             c----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence            5    34899999999999987653  347889999999999997754 7788999999999999998653 344 5789


Q ss_pred             CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  240 (582)
                      +|++|++++|.++.++.  ...+++|++|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus       170 ~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          170 TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence            99999999999998855  4468999999999999999988898999999999999999999999999999999999999


Q ss_pred             cCc--ccchhhhccCCCcEEEcccC
Q 007984          241 ALS--ALPAELGKLSKLGTLDLHSN  263 (582)
Q Consensus       241 ~i~--~l~~~l~~~~~L~~L~l~~~  263 (582)
                      .+.  .++.++..+++|+.+++.++
T Consensus       248 ~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          248 GFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CccCcCHHHHHhccccceEEECCCc
Confidence            998  66788888999998888744

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.4e-22  Score=190.17  Aligned_cols=199  Identities=30%  Similarity=0.432  Sum_probs=181.0

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ..+.+++.++.++.+|..+.  +++++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            46789999999999987663  689999999999999876 789999999999999999999988889999999999999


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchh-hhccCCCCEEecCCCcCCccch
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  514 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~  514 (582)
                      |.+..++...|..+++|++|++++|.++.+.+..|..+++|++|++ .+.+..++.. +..+++|+.|++++|.++.++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            9999999888999999999999999999998888999999999999 6677777664 7889999999999999998875


Q ss_pred             -hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          515 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       515 -~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                       .|.++++|++|++++|+++.+|+..+..+++|+.|++++|++..
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence             48899999999999999999999888777999999999999754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.5e-22  Score=189.38  Aligned_cols=217  Identities=21%  Similarity=0.314  Sum_probs=174.2

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCcccch-hhhC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l~~-~~~~   89 (582)
                      ...++++..+..+|..+               .+++++|+++++.++.++. .|..+++|++|++++|.+..++. .+..
T Consensus        10 ~~~~c~~~~l~~ip~~l---------------~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   74 (276)
T ss_dssp             TEEECTTSCCSSCCSSS---------------CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEEecCCCccccCCCC---------------CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence            35788888888999866               4579999999999998865 78999999999999999987755 7889


Q ss_pred             CCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCC--CccccccCCCCcEE
Q 007984           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L  165 (582)
                      +++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++++|.+..  ++..+..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            999999999999998765 568899999999999999987755 68889999999999999886  67889999999999


Q ss_pred             EccCCcccccchhhhcccccCc----EEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcC-CcCCCCCcEEEcCCC
Q 007984          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN  240 (582)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~  240 (582)
                      ++++|+++.+....+..+++++    ++++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            9999999888777677777776    77777777776655444445677777777777665443 455666666666666


Q ss_pred             cCc
Q 007984          241 ALS  243 (582)
Q Consensus       241 ~i~  243 (582)
                      .+.
T Consensus       235 ~~~  237 (276)
T 2z62_A          235 PWD  237 (276)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.5e-24  Score=206.72  Aligned_cols=244  Identities=20%  Similarity=0.202  Sum_probs=207.8

Q ss_pred             hcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCc--cCChhhh-------ccCCccEEEccCCcCC-cCCccc
Q 007984           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL  133 (582)
Q Consensus        64 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~~~-~l~~~~  133 (582)
                      +...++|++|+++++.+ .+|..+...  |++|++++|.+.  .++..+.       ++++|++|++++|.+. .+|..+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            44567888999999999 888876655  999999999886  4666555       7999999999999998 577765


Q ss_pred             --ccCCCCCeEEcCCCcCCCCccccccC-----CCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc---cchhh
Q 007984          134 --GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI  203 (582)
Q Consensus       134 --~~~~~L~~L~l~~~~~~~i~~~l~~~-----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~l  203 (582)
                        ..+++|++|++++|.+..++..+..+     ++|++|++++|++..+.+..++.+++|++|++++|.+..   ++..+
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence              89999999999999999888777776     999999999999999998889999999999999998654   23344


Q ss_pred             --cCCCCccEEeCCCCcCccCC----cCCcCCCCCcEEEcCCCcCcccc--hhhhccCCCcEEEcccCcccccchhhhcc
Q 007984          204 --GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQL  275 (582)
Q Consensus       204 --~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~l~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  275 (582)
                        ..+++|+.|++++|.+..++    ..+..+++|++|++++|.+...+  ..+..+++|++|++++|.++.++.... .
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~  274 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-A  274 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-S
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-C
Confidence              78899999999999998443    23467899999999999999654  456678999999999999998877665 6


Q ss_pred             cccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984          276 RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (582)
Q Consensus       276 ~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~  312 (582)
                      +|+++++++|.++++|. +..+++|++|++++|+++.
T Consensus       275 ~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            79999999999999966 8999999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.2e-22  Score=206.61  Aligned_cols=235  Identities=20%  Similarity=0.255  Sum_probs=167.6

Q ss_pred             ecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCCCCC
Q 007984           15 NLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHML   93 (582)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L   93 (582)
                      ++++.....+|..+......         +++|++|++++|.++.++ ..|..+++|++|+|++|.++.++. +..+++|
T Consensus        13 ~~~~~~~~~l~~~l~~l~~~---------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L   82 (487)
T 3oja_A           13 KIEKVTDSSLKQALASLRQS---------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL   82 (487)
T ss_dssp             EEESCCTTTHHHHHHTTSTT---------GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTC
T ss_pred             ecccCchhhhHHHHHHhccc---------CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCC
Confidence            33343444566666554322         557888888888887664 578888888888888888875544 7778888


Q ss_pred             cEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCCcc
Q 007984           94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKL  172 (582)
Q Consensus        94 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i  172 (582)
                      ++|++++|.+..++.    .++|++|++++|.+..++.  ..+++|+.|++++|.+..+ +..+..+++|++|++++|.+
T Consensus        83 ~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A           83 RTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             CEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             CEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence            888888887776542    3778888888888776543  2457788888888877765 34577778888888888877


Q ss_pred             cccchhhhc-ccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhc
Q 007984          173 TVLSNNLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK  251 (582)
Q Consensus       173 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~  251 (582)
                      +.+.+..+. .+++|++|++++|.+..++. ...+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..
T Consensus       157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~  235 (487)
T 3oja_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (487)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence            766555554 67778888888877776643 2346777777777777777766677777777777777777777777777


Q ss_pred             cCCCcEEEcccCccc
Q 007984          252 LSKLGTLDLHSNQLK  266 (582)
Q Consensus       252 ~~~L~~L~l~~~~~~  266 (582)
                      +++|+.|++++|.+.
T Consensus       236 l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          236 SQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECTTCCBC
T ss_pred             CCCCCEEEcCCCCCc
Confidence            777777777777766

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=2.9e-22  Score=203.91  Aligned_cols=240  Identities=21%  Similarity=0.215  Sum_probs=184.1

Q ss_pred             cchhHhhcCC----CCCcEEEcCCCCCcccc-hhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcc
Q 007984           58 EKLKEDLRNL----PLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS  132 (582)
Q Consensus        58 ~~~~~~~~~~----~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~  132 (582)
                      ..+|..+..+    ++|++|+|++|.+..++ ..|..+++|++|++++|.+...+. +..+++|++|++++|.+..++. 
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-   97 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-   97 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-
Confidence            3556555444    48999999999999774 589999999999999999986654 8899999999999999887653 


Q ss_pred             cccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc-cchhhc-CCCCcc
Q 007984          133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIG-SLSRLI  210 (582)
Q Consensus       133 ~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~-~~~~L~  210 (582)
                         .++|++|++++|.+..++.  ..+++|++|++++|.++.+.+..++.+++|+.|++++|.+.. .+..+. .+++|+
T Consensus        98 ---~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           98 ---GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             ---CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             ---CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence               3899999999999987754  356899999999999998888778899999999999999876 345554 688999


Q ss_pred             EEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhc-ccccEEEccCCCCC-
Q 007984          211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLS-  288 (582)
Q Consensus       211 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~l~-  288 (582)
                      .|++++|.+..++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++..... .+++.+++++|.+. 
T Consensus       173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             EEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred             EEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence            99999999887743 4458889999999999888877788888888888888887765543222 23555555555544 


Q ss_pred             -CCCccccCCCCCCeEEc
Q 007984          289 -GLPPEIGKMTTLRKLLL  305 (582)
Q Consensus       289 -~~~~~l~~~~~L~~L~l  305 (582)
                       .++..+..++.++.+++
T Consensus       252 ~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          252 GTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHhCCCCcEEec
Confidence             23333444444444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=7.3e-22  Score=186.23  Aligned_cols=202  Identities=29%  Similarity=0.325  Sum_probs=176.1

Q ss_pred             ccccEEEecCCCCccCCh-hhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984          357 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL  434 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  434 (582)
                      ..++.++++++.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            468999999999998776 66678999999999999998765 6889999999999999999988888899999999999


Q ss_pred             CCCCCccCCCccccCCCCCcEEeCCCCcCCCCC-CCCCCCCccchhhhh-ccccccCc-hhhhccCCCC----EEecCCC
Q 007984          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYL-RMQLREAP-TDILRLQQLR----ILDLSQN  507 (582)
Q Consensus       435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l-~~~~~~~~-~~~~~~~~L~----~L~l~~~  507 (582)
                      ++|.+..+....+..+++|++|++++|.+.... +..+..+++|++|++ .+.+..++ ..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            999999988877999999999999999998764 677899999999999 56666544 3566666666    8999999


Q ss_pred             cCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          508 SLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       508 ~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      .++.++.......+|++|++++|+++++|+..+..+++|+.|++++|++..
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            999887666566799999999999999999888878999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.3e-21  Score=182.27  Aligned_cols=200  Identities=26%  Similarity=0.312  Sum_probs=120.9

Q ss_pred             cccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccCChhhhccCCccEE
Q 007984           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF  119 (582)
Q Consensus        41 ~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  119 (582)
                      +.+++++++++++++.++.+|..+.  ++++.|++++|.+..+ +..+..+++|++|++++|.+..++.. ..+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            4445666777777766666665443  4666777777766654 34566666677777766666655432 556666666


Q ss_pred             EccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc
Q 007984          120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (582)
Q Consensus       120 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~  198 (582)
                      ++++|.+..+|..+..+++|+.|++++|.+..++ ..|..+++|++|++++|+++.+....+..+++|+.|++++|.+..
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            6666666666665666666666666666666554 346666666666666666666665555556666666666665555


Q ss_pred             cch-hhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984          199 MPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       199 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      ++. .+..+++|+.|++++|.+..+|..+....+|+.+++++|.+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            543 234455555666655555555555555555555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.9e-21  Score=185.84  Aligned_cols=193  Identities=21%  Similarity=0.307  Sum_probs=103.0

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      +++|++|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            445555555555555543 35555555555555555555544 555555555555555555443 344555555555555


Q ss_pred             CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (582)
Q Consensus       124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (582)
                      |.+..++. +..+++|++|++++|.+..+                       ..  +..+++|++|++++|.+..++. +
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-----------------------~~--l~~l~~L~~L~l~~n~l~~~~~-l  169 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNI-----------------------SP--LAGLTNLQYLSIGNAQVSDLTP-L  169 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCC-----------------------GG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcC-----------------------cc--ccCCCCccEEEccCCcCCCChh-h
Confidence            55554432 44445555555555544444                       33  4444445555555554444433 4


Q ss_pred             cCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCccccc
Q 007984          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (582)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~  268 (582)
                      ..+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++..
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred             cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence            455555555555555554432 5555666666666666665542 55666666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3e-21  Score=182.51  Aligned_cols=197  Identities=28%  Similarity=0.350  Sum_probs=180.4

Q ss_pred             HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchh
Q 007984            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAA   86 (582)
Q Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~   86 (582)
                      .+.++.++++++.++.+|..+               .+++++|+++++.++.++ ..|..+++|++|++++|.++.++..
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~---------------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   73 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD   73 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCC---------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCC---------------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence            467889999999999999876               457999999999999774 6899999999999999999987654


Q ss_pred             hhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCCccc-cccCCCCcE
Q 007984           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSK  164 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~  164 (582)
                       ..+++|++|++++|.+..+|..+..+++|++|++++|+++.++ ..+.++++|++|++++|.+..++.. |..+++|++
T Consensus        74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence             7899999999999999999998999999999999999999886 5688999999999999999987655 788999999


Q ss_pred             EEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc
Q 007984          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL  220 (582)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  220 (582)
                      |++++|+++.++...+..+++|+.|++++|.+..+|..+....+|+.+++++|.+.
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            99999999999998899999999999999999999998888899999999999865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4e-21  Score=183.63  Aligned_cols=197  Identities=18%  Similarity=0.311  Sum_probs=151.6

Q ss_pred             CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~  168 (582)
                      .+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence            4455555555555555554 35556666666666666665544 566666666666666666653 56777778888888


Q ss_pred             CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (582)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~  248 (582)
                      +|+++.+..  +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++. 
T Consensus       116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence            887777654  7888889999999998887765 7889999999999999998766 8999999999999999998865 


Q ss_pred             hhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCcc
Q 007984          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE  293 (582)
Q Consensus       249 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~  293 (582)
                      +..+++|++|++++|.+..++......+|+.+++++|.++..+..
T Consensus       191 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCee
Confidence            889999999999999999888655556699999999988876554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=7.6e-21  Score=178.36  Aligned_cols=196  Identities=23%  Similarity=0.355  Sum_probs=139.5

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccCChh-hhccCCccEEEccC
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSS  123 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~  123 (582)
                      +.+.++++++.++.+|..+.  +++++|+++++.+..++. .|..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            45677777777776665443  467777777777776644 566777777777777777766544 45677777777777


Q ss_pred             CcCCcCCc-ccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccch
Q 007984          124 NQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (582)
Q Consensus       124 ~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (582)
                      |.+..++. .+.++++|++|++++|.+..++. .+..+++|++|++++|.++.++...+..+++|++|++++|.+..++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            77776653 45667777777777777776543 36777777788887777777777767777888888888887776654


Q ss_pred             -hhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc
Q 007984          202 -TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       202 -~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~  243 (582)
                       .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence             46777888888888888876654 4677888888888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.6e-21  Score=176.48  Aligned_cols=192  Identities=16%  Similarity=0.219  Sum_probs=108.6

Q ss_pred             CCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCc-CccCCh-hhhccCCccEEEccC-CcCCcCC-cccccCCCCCeEE
Q 007984           69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK  143 (582)
Q Consensus        69 ~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~L~  143 (582)
                      +|++|+++++.++.++. .|..+++|++|++++|. +..++. .+.++++|++|++++ |.+..++ ..+.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44455555555444433 44445555555555553 444432 344555555555554 4554443 2344555555555


Q ss_pred             cCCCcCCCCccccccCCCCc---EEEccCC-cccccchhhhcccccCc-EEEccCCccCccchhhcCCCCccEEeCCCCc
Q 007984          144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (582)
Q Consensus       144 l~~~~~~~i~~~l~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  218 (582)
                      +++|.+..+|. +..+++|+   +|++++| .++.++...+..+++|+ ++++++|.+..++......++|+.|++++|.
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence            55555555543 45555555   6666666 66666665566666666 6666666666555433233667777777773


Q ss_pred             -CccCC-cCCcCC-CCCcEEEcCCCcCcccchhhhccCCCcEEEcccC
Q 007984          219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (582)
Q Consensus       219 -~~~~~-~~l~~~-~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~  263 (582)
                       +..++ ..+..+ ++|+.|++++|.++.+|..  .+++|+.|++.++
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence             66553 446666 7777777777777766554  5667777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.5e-20  Score=172.75  Aligned_cols=177  Identities=31%  Similarity=0.400  Sum_probs=124.6

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ..+.+++.++.+..+|..+.  +.++.|++++|.+..++. .+..+++|++|++++|.+++++...|..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            44567777777766666553  566777777777666544 466667777777777777766666666677777777777


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccch-h
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-G  515 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~  515 (582)
                      |.++.++...|..+++|++|++++|.++.+.+..                      +..+++|+.|++++|.++.++. .
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----------------------FDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------TTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhH----------------------hccCCcccEEECcCCcCCccCHHH
Confidence            7777666666666777777777777666554433                      3456778888888888887765 4


Q ss_pred             hcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       516 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      +.++++|++|++++|+++.+++..+..+++|+.|++++|++..
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            7788888888888888888877666666888888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.3e-21  Score=175.54  Aligned_cols=193  Identities=21%  Similarity=0.313  Sum_probs=167.3

Q ss_pred             ccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCC-Ccccch-hhhCCCCCcEEecCC-CcCccCC-hhhhccCCccE
Q 007984           44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVK  118 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~  118 (582)
                      ..++++|+++++.++.++. .|..+++|++|++++|. ++.++. .|..+++|++|++++ |.+..++ ..+.++++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            4589999999999998875 78899999999999997 887765 788999999999998 8998876 45788999999


Q ss_pred             EEccCCcCCcCCcccccCCCCC---eEEcCCC-cCCCCccc-cccCCCCc-EEEccCCcccccchhhhcccccCcEEEcc
Q 007984          119 FDCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPED-LADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIAS  192 (582)
Q Consensus       119 L~l~~~~~~~l~~~~~~~~~L~---~L~l~~~-~~~~i~~~-l~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L~l~  192 (582)
                      |++++|.+..+|. +..+++|+   +|++++| .+..++.. |..+++|+ +|++++|+++.++...+.. ++|++|+++
T Consensus       110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            9999999998876 88888888   9999999 88877654 88899999 9999999999888877777 899999999


Q ss_pred             CCc-cCccc-hhhcCC-CCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984          193 KNL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       193 ~~~-~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  240 (582)
                      +|. +..++ ..+..+ ++|+.|++++|.+..+|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            995 88775 467788 8999999999999988765  6788999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=2.5e-21  Score=191.95  Aligned_cols=226  Identities=17%  Similarity=0.189  Sum_probs=157.9

Q ss_pred             ccCccEEEcCCCCccc-----hhHhhcCCCCCcEEEcCCCCCcc----cchh-------hhCCCCCcEEecCCCcCcc--
Q 007984           44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK--  105 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~-----~~~~~~~~~~L~~L~L~~~~~~~----l~~~-------~~~~~~L~~L~l~~~~~~~--  105 (582)
                      +++|++|++++|.+..     ++..+..+++|++|+|++|.+..    +|..       +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            6788899998888774     33457788888999888876552    2333       3678888888888888775  


Q ss_pred             ---CChhhhccCCccEEEccCCcCCc-----CCcccccC---------CCCCeEEcCCCcCC--CCc---cccccCCCCc
Q 007984          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS  163 (582)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~---------~~L~~L~l~~~~~~--~i~---~~l~~~~~L~  163 (582)
                         ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|.+.  .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               56667788888888888888752     22333344         78888888888776  333   4566778888


Q ss_pred             EEEccCCccccc-----chhhhcccccCcEEEccCCcc-----CccchhhcCCCCccEEeCCCCcCcc-----CCcCC--
Q 007984          164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSI--  226 (582)
Q Consensus       164 ~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l--  226 (582)
                      +|++++|+++..     .+..+..+++|++|++++|.+     ..++..+..+++|+.|++++|.+..     ++..+  
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            888888877632     222466777888888888777     3456667777778888888877663     24444  


Q ss_pred             cCCCCCcEEEcCCCcCcc-----cchhh-hccCCCcEEEcccCcccccc
Q 007984          227 SGCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC  269 (582)
Q Consensus       227 ~~~~~L~~L~l~~~~i~~-----l~~~l-~~~~~L~~L~l~~~~~~~~~  269 (582)
                      ..+++|++|++++|.++.     ++..+ ..+++|++|++++|.++...
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            336777777777777775     56655 45677777777777766544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=6.6e-20  Score=172.06  Aligned_cols=178  Identities=31%  Similarity=0.423  Sum_probs=128.0

Q ss_pred             ccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEe
Q 007984          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (582)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  457 (582)
                      .+++|++|+++++.+..++ .+..+++|++|++++|.++++.  .+..+++|++|++++|.++.+....|..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4566777777777766655 3566777777777777776653  466777777777777777777666667777777777


Q ss_pred             CCCCcCCCCCCCCCCCCccchhhhh-ccccccCchh-hhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCc
Q 007984          458 LSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA  534 (582)
Q Consensus       458 l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~  534 (582)
                      +++|.+++..+..+..+++|++|++ .+.+..++.. +..+++|+.|++++|.++.++.. +.++++|++|++++|++++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            7777777666666777777777777 4555555443 56778888888888888877543 6778888888888888888


Q ss_pred             CCCcccccccccceeeccCCCCCc
Q 007984          535 LPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       535 l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      +++..+..+++|+.|++++|++..
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCHHHHhCCcCCCEEEccCCCccc
Confidence            777766666888888888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=4.6e-20  Score=173.14  Aligned_cols=193  Identities=27%  Similarity=0.369  Sum_probs=169.9

Q ss_pred             ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ..++.+.+.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++++...+..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            56889999999988775 4677999999999999998875 688999999999999999999988889999999999999


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchh-hhccCCCCEEecCCCcCCccch
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  514 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~  514 (582)
                      |.+..++...|..+++|++|++++|.++++.+..+..+++|++|++ .+.+..++.. +..+++|+.|++++|.++.++.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            9999998888999999999999999999988888999999999999 6666666554 6889999999999999998764


Q ss_pred             -hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          515 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       515 -~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                       .+..+++|++|++++|.+..       .|++|+.+++++|.+..
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred             HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence             47899999999999998763       34778888888877653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=4.5e-21  Score=190.13  Aligned_cols=222  Identities=18%  Similarity=0.179  Sum_probs=129.0

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcc-----cchhhhCCCCCcEEecCCCcCccC----Chhh------
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMKI----PDEI------  110 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~l----~~~~------  110 (582)
                      .++...++...+..++..+..+++|++|++++|.+..     ++..+..+++|++|++++|.+..+    |..+      
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            3444444444455666777888888888888888773     333466788888888888755532    3333      


Q ss_pred             -hccCCccEEEccCCcCCc-----CCcccccCCCCCeEEcCCCcCCC-----CccccccC---------CCCcEEEccCC
Q 007984          111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEGN  170 (582)
Q Consensus       111 -~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~---------~~L~~L~l~~~  170 (582)
                       ..+++|++|++++|.+..     ++..+.++++|++|++++|.+..     ++..+..+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence             566777777777777664     44556667777777777776652     22223333         66667776666


Q ss_pred             cccccch----hhhcccccCcEEEccCCccCc------cchhhcCCCCccEEeCCCCcCc-----cCCcCCcCCCCCcEE
Q 007984          171 KLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEF  235 (582)
Q Consensus       171 ~i~~~~~----~~~~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L  235 (582)
                      +++....    ..+..+++|++|++++|.+..      .+..+..+++|+.|++++|.+.     .++..+..+++|++|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            6652211    134455566666666665541      1224455556666666666552     334445555555555


Q ss_pred             EcCCCcCcc-----cchhhhc--cCCCcEEEcccCcccc
Q 007984          236 YMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE  267 (582)
Q Consensus       236 ~l~~~~i~~-----l~~~l~~--~~~L~~L~l~~~~~~~  267 (582)
                      ++++|.++.     ++..+..  +++|++|++++|.++.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            555555542     2333322  5555555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=2e-20  Score=182.11  Aligned_cols=243  Identities=16%  Similarity=0.183  Sum_probs=173.6

Q ss_pred             CccEEEcCCCCccchhHhhcCC--CCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCcc--CChhhhccCCccEEEc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDC  121 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l  121 (582)
                      .++.++++++.+.  +..+..+  ++++.|+++++.+...+..+..+++|++|++++|.+..  ++..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            4788888887765  3455555  78888888888877665556678888888888887763  6666778888888888


Q ss_pred             cCCcCC-cCCcccccCCCCCeEEcCCC-cCC--CCccccccCCCCcEEEccCC-ccccc-chhhhcccc-cCcEEEccCC
Q 007984          122 SSNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKN  194 (582)
Q Consensus       122 ~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~--~i~~~l~~~~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~  194 (582)
                      ++|.+. ..+..+..+++|++|++++| .+.  .++..+..+++|++|++++| .+++. ....+..++ +|++|++++|
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            888776 44556777888888888888 566  35556778888888888888 77753 233467778 8888888888


Q ss_pred             c--c--CccchhhcCCCCccEEeCCCCc-Cc-cCCcCCcCCCCCcEEEcCCCc-Cc-ccchhhhccCCCcEEEcccCccc
Q 007984          195 L--L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLK  266 (582)
Q Consensus       195 ~--~--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-i~-~l~~~l~~~~~L~~L~l~~~~~~  266 (582)
                      .  +  ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| +.
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence            4  3  3455666778888888888887 44 445677788888888888884 32 11235677888888888887 44


Q ss_pred             ccchhhhcccccEEEccCCCCCCCC
Q 007984          267 EYCVEACQLRLSVLDLSNNSLSGLP  291 (582)
Q Consensus       267 ~~~~~~~~~~L~~l~l~~~~l~~~~  291 (582)
                      ..........++.++++.|.+++..
T Consensus       285 ~~~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          285 DGTLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             TTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred             HHHHHHHHhhCcceEEecccCcccc
Confidence            3332333334677777777777643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=2.5e-20  Score=182.76  Aligned_cols=243  Identities=20%  Similarity=0.220  Sum_probs=171.2

Q ss_pred             eecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-----HhhcCCC-CCcEEEcCCCCCccc-chh
Q 007984           14 LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PAA   86 (582)
Q Consensus        14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-----~~~~~~~-~L~~L~L~~~~~~~l-~~~   86 (582)
                      .+++.+.+......+...            .++|++|++++|.++..+     +.+..++ +|++|++++|.++.. +..
T Consensus         3 ~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~   70 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE   70 (362)
T ss_dssp             EECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH
T ss_pred             cccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH
Confidence            466777777544444442            456999999999888654     6678888 899999999988854 334


Q ss_pred             hhCC-----CCCcEEecCCCcCccCChh-----hhcc-CCccEEEccCCcCCcCCc-c----ccc-CCCCCeEEcCCCcC
Q 007984           87 IGEL-----HMLKSLDVSFNSIMKIPDE-----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNCI  149 (582)
Q Consensus        87 ~~~~-----~~L~~L~l~~~~~~~l~~~-----~~~~-~~L~~L~l~~~~~~~l~~-~----~~~-~~~L~~L~l~~~~~  149 (582)
                      +..+     ++|++|++++|.+......     +..+ ++|++|++++|.+...+. .    +.. .++|++|++++|.+
T Consensus        71 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A           71 LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             HHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence            4443     8899999999988854332     4444 789999999998875542 2    333 36899999999888


Q ss_pred             C-----CCccccccCC-CCcEEEccCCcccccchhhhc----cc-ccCcEEEccCCccCc-----cchhhcC-CCCccEE
Q 007984          150 T-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIRL  212 (582)
Q Consensus       150 ~-----~i~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~L  212 (582)
                      .     .++..+...+ +|++|++++|+++......+.    .+ ++|++|++++|.+..     ++..+.. .++|+.|
T Consensus       151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred             CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence            7     3344455665 899999999988876654343    34 588888888888865     4455544 4588888


Q ss_pred             eCCCCcCccCC-----cCCcCCCCCcEEEcCCCcCc--------ccchhhhccCCCcEEEcccCccccc
Q 007984          213 DLHQNRILSIP-----SSISGCCSLAEFYMGNNALS--------ALPAELGKLSKLGTLDLHSNQLKEY  268 (582)
Q Consensus       213 ~l~~~~~~~~~-----~~l~~~~~L~~L~l~~~~i~--------~l~~~l~~~~~L~~L~l~~~~~~~~  268 (582)
                      ++++|.+...+     ..+..+++|++|++++|.+.        .++..+..+++|+.|++++|.+...
T Consensus       231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            88888877542     34567778888888888733        2233456667777888887776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=4.1e-19  Score=164.56  Aligned_cols=158  Identities=28%  Similarity=0.417  Sum_probs=133.8

Q ss_pred             cccccEEEecCCCCccCCh-hhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEee
Q 007984          356 SVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK  433 (582)
Q Consensus       356 ~~~l~~l~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (582)
                      +..++.+++.++.+..++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|+
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            4578999999999987766 46678999999999999998765 588999999999999999999988899999999999


Q ss_pred             CCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccc
Q 007984          434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP  513 (582)
Q Consensus       434 l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  513 (582)
                      +++|.++.++...|..+++|++|++++|.++.+.+..|.                      .+++|+.|++++|.++.++
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD----------------------KLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSSCCSCCC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC----------------------cCcCCCEEECCCCcCCccC
Confidence            999999999988889999999999999999877654444                      4567777888888777765


Q ss_pred             h-hhcCCCCCCEEeCCCCcCCcC
Q 007984          514 E-GFKNLTSLTELDLSDNNISAL  535 (582)
Q Consensus       514 ~-~~~~l~~L~~L~l~~n~l~~l  535 (582)
                      . .+..+++|++|++++|+++..
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            4 477778888888888877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=172.69  Aligned_cols=196  Identities=18%  Similarity=0.151  Sum_probs=88.2

Q ss_pred             CCCcEEecCCCcCcc-CChhh--hccCCccEEEccCCcCCcC-C----cccccCCCCCeEEcCCCcCCCCc-cccccCCC
Q 007984           91 HMLKSLDVSFNSIMK-IPDEI--GSATALVKFDCSSNQLKEL-P----SSLGRCLNLSDFKASNNCITSLP-EDLADCSK  161 (582)
Q Consensus        91 ~~L~~L~l~~~~~~~-l~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~  161 (582)
                      ++|++|++++|.+.. .|..+  ..+++|++|++++|.+... +    ..+..+++|++|++++|.+..++ ..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            334444444444442 23333  4444455555544444421 1    11223445555555555444332 23444555


Q ss_pred             CcEEEccCCcccc---cc-hhhhcccccCcEEEccCCccCccch----hhcCCCCccEEeCCCCcCccC-CcCCcCC---
Q 007984          162 MSKLDVEGNKLTV---LS-NNLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRILSI-PSSISGC---  229 (582)
Q Consensus       162 L~~L~l~~~~i~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~-~~~l~~~---  229 (582)
                      |++|++++|++..   +. ...+..+++|++|++++|.++.++.    .+..+++|++|++++|.+... |..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            5555555554332   11 1112344455555555555543332    123445555555555555543 3333333   


Q ss_pred             CCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCC
Q 007984          230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS  288 (582)
Q Consensus       230 ~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~  288 (582)
                      ++|++|++++|.++.+|..+.  ++|++|++++|.++.++......+|+.+++++|.++
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence            355555555555555544432  455555555555555433333334555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=172.08  Aligned_cols=221  Identities=16%  Similarity=0.143  Sum_probs=178.9

Q ss_pred             ccCccEEEcCCCCccc--hhH--hhcCCCCCcEEEcCCCCCcc-cchhh--hCCCCCcEEecCCCcCccC-C----hhhh
Q 007984           44 AVDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIG  111 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~--~~~--~~~~~~~L~~L~L~~~~~~~-l~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~  111 (582)
                      ...++.+.+.++.+..  +..  .+..+++|++|++++|.+.. .|..+  ..+++|++|++++|.+... +    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            4568899999887762  221  22345779999999999884 45566  8899999999999998853 2    2345


Q ss_pred             ccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCC---Cc--cccccCCCCcEEEccCCcccccchh---hhcc
Q 007984          112 SATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---LP--EDLADCSKMSKLDVEGNKLTVLSNN---LIAS  182 (582)
Q Consensus       112 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~---i~--~~l~~~~~L~~L~l~~~~i~~~~~~---~~~~  182 (582)
                      .+++|++|++++|.+..++ ..+.++++|++|++++|.+..   ++  ..+..+++|++|++++|+++.++..   .++.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            7999999999999998665 578899999999999998753   32  2347889999999999999765543   3578


Q ss_pred             cccCcEEEccCCccCcc-chhhcCC---CCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEE
Q 007984          183 WTMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL  258 (582)
Q Consensus       183 ~~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L  258 (582)
                      +++|++|++++|.+... |..+..+   ++|+.|++++|.++.+|..+.  ++|++|++++|.++.+|. +..+++|++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence            89999999999999876 6666555   699999999999998887774  899999999999998765 6888999999


Q ss_pred             EcccCcccc
Q 007984          259 DLHSNQLKE  267 (582)
Q Consensus       259 ~l~~~~~~~  267 (582)
                      ++++|.++.
T Consensus       300 ~L~~N~l~~  308 (310)
T 4glp_A          300 TLDGNPFLV  308 (310)
T ss_dssp             ECSSTTTSC
T ss_pred             ECcCCCCCC
Confidence            999998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=1.2e-19  Score=176.49  Aligned_cols=247  Identities=15%  Similarity=0.190  Sum_probs=189.6

Q ss_pred             hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcc--cchh
Q 007984            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA   86 (582)
Q Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~   86 (582)
                      +..+.++++++.+.  |..+ ..+          ..++++.++++++.+...+..+..+++|++|++++|.+..  ++..
T Consensus        47 ~~~~~l~l~~~~~~--~~~~-~~~----------~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVT-GRL----------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHH-HHH----------HHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             hhheeeccccccCC--HHHH-Hhh----------hhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            34788899888765  3222 221          0168999999999888776667789999999999999873  6778


Q ss_pred             hhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCC-cCC--cCCcccccCCCCCeEEcCCC-cCCC--CccccccC
Q 007984           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC  159 (582)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~--~l~~~~~~~~~L~~L~l~~~-~~~~--i~~~l~~~  159 (582)
                      +..+++|++|++++|.+. ..+..+..+++|++|++++| .++  .++..+.++++|++|++++| .+..  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            899999999999999887 45667888999999999999 576  36667888999999999999 8874  56678889


Q ss_pred             C-CCcEEEccCCc--cc-ccchhhhcccccCcEEEccCCc-cC-ccchhhcCCCCccEEeCCCCc-Cc-cCCcCCcCCCC
Q 007984          160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS  231 (582)
Q Consensus       160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~  231 (582)
                      + +|++|++++|.  ++ ..-...+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            9 99999999994  43 2222347789999999999998 43 456678889999999999995 32 11235788999


Q ss_pred             CcEEEcCCCcCcccchhhhcc-CCCcEEEcccCcccccchh
Q 007984          232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCVE  271 (582)
Q Consensus       232 L~~L~l~~~~i~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~  271 (582)
                      |+.|++++| +..-  .+..+ ..++.|++++|.+++..+.
T Consensus       274 L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          274 LKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCC
Confidence            999999999 4421  12222 2356666889988875544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.1e-18  Score=163.21  Aligned_cols=171  Identities=19%  Similarity=0.253  Sum_probs=95.9

Q ss_pred             CCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCC
Q 007984           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (582)
Q Consensus        67 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  146 (582)
                      +++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCC
Confidence            445555555555555442 24445555555555555554443 455555555555555555443 245555555555555


Q ss_pred             CcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCC
Q 007984          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI  226 (582)
Q Consensus       147 ~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l  226 (582)
                      |.+..+ ..+..+++|++|++++|+++.+.  .+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++ .+
T Consensus       122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l  196 (291)
T 1h6t_A          122 NGISDI-NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL  196 (291)
T ss_dssp             SCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CcCCCC-hhhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-hh
Confidence            555554 34555556666666666555552  25556666666666666655544 556666666666666666654 36


Q ss_pred             cCCCCCcEEEcCCCcCccc
Q 007984          227 SGCCSLAEFYMGNNALSAL  245 (582)
Q Consensus       227 ~~~~~L~~L~l~~~~i~~l  245 (582)
                      ..+++|+.|++++|.+...
T Consensus       197 ~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          197 AGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             TTCTTCSEEEEEEEEEECC
T ss_pred             ccCCCCCEEECcCCcccCC
Confidence            6666677777766666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.78  E-value=3.3e-19  Score=174.79  Aligned_cols=250  Identities=19%  Similarity=0.193  Sum_probs=163.8

Q ss_pred             EEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccc-----hhhhCCC-CCcEEecCCCcCccC-Chhhhcc-----CC
Q 007984           49 KLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-----AAIGELH-MLKSLDVSFNSIMKI-PDEIGSA-----TA  115 (582)
Q Consensus        49 ~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~-----~~  115 (582)
                      .+.++.+.++.. |..+...++|++|++++|.++..+     ..+..++ +|++|++++|.+... +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            357788888854 445555666999999999988664     5778888 899999999988865 3344443     88


Q ss_pred             ccEEEccCCcCCcCCc-----ccccC-CCCCeEEcCCCcCCCCcc-----cccc-CCCCcEEEccCCcccccchhhh---
Q 007984          116 LVKFDCSSNQLKELPS-----SLGRC-LNLSDFKASNNCITSLPE-----DLAD-CSKMSKLDVEGNKLTVLSNNLI---  180 (582)
Q Consensus       116 L~~L~l~~~~~~~l~~-----~~~~~-~~L~~L~l~~~~~~~i~~-----~l~~-~~~L~~L~l~~~~i~~~~~~~~---  180 (582)
                      |++|++++|.+...+.     .+..+ ++|++|++++|.+...+.     .+.. .++|++|++++|.+++.....+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999998875432     24445 788888888888775432     2334 3688888888888875443332   


Q ss_pred             -cccc-cCcEEEccCCccCccc-----hhhcCC-CCccEEeCCCCcCcc-----CCcCCcC-CCCCcEEEcCCCcCcccc
Q 007984          181 -ASWT-MLTELIASKNLLNGMP-----ETIGSL-SRLIRLDLHQNRILS-----IPSSISG-CCSLAEFYMGNNALSALP  246 (582)
Q Consensus       181 -~~~~-~L~~L~l~~~~~~~~~-----~~l~~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~L~l~~~~i~~l~  246 (582)
                       ...+ +|++|++++|.+....     ..+..+ ++|+.|++++|.+..     ++..+.. .++|++|++++|.++..+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence             3333 7778888777775432     234444 477777777777664     3334433 346777777777666432


Q ss_pred             -----hhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984          247 -----AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (582)
Q Consensus       247 -----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~  312 (582)
                           ..+..+++|++|++++|.+..+.....              ..++..+..+++|+.+++++|++..
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~--------------~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC--------------KALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH--------------HHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHH--------------HHHHHHhccCCceEEEecCCCcCCC
Confidence                 233555667777777666544333211              0122345677888888898888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=3.6e-18  Score=161.53  Aligned_cols=187  Identities=22%  Similarity=0.345  Sum_probs=160.3

Q ss_pred             EcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc
Q 007984           74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP  153 (582)
Q Consensus        74 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~  153 (582)
                      .+....+..+ ..+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++
T Consensus        30 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~  106 (291)
T 1h6t_A           30 NLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS  106 (291)
T ss_dssp             HTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred             HhcCCCcccc-cchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence            3444444443 245678899999999999998854 8889999999999999998876 889999999999999999875


Q ss_pred             cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCc
Q 007984          154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA  233 (582)
Q Consensus       154 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~  233 (582)
                       .+..+++|++|++++|++..++.  +..+++|++|++++|.+..+ ..+..+++|+.|++++|.+..++. +..+++|+
T Consensus       107 -~l~~l~~L~~L~L~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~  181 (291)
T 1h6t_A          107 -SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ  181 (291)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             -hhccCCCCCEEECCCCcCCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccC
Confidence             48999999999999999998743  88999999999999999887 578889999999999999988765 88899999


Q ss_pred             EEEcCCCcCcccchhhhccCCCcEEEcccCcccccc
Q 007984          234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC  269 (582)
Q Consensus       234 ~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~  269 (582)
                      .|++++|.++.++. +..+++|+.|++++|.+...+
T Consensus       182 ~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          182 NLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             EEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             EEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            99999999998864 888999999999999877543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=3.5e-19  Score=173.63  Aligned_cols=210  Identities=20%  Similarity=0.249  Sum_probs=172.2

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEe-eC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCL-KL  434 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L-~l  434 (582)
                      ..+.+++++++++.+|..+  .+++++|++++|.++.+|. .|.++++|++|++++|.+.+ ++...|.+++++.++ .+
T Consensus        10 ~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             ETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             eCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            4467889999999999877  4689999999999999986 68999999999999998755 666678889988864 45


Q ss_pred             CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh--ccccccCch-hhhcc-CCCCEEecCCCcCC
Q 007984          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL--RMQLREAPT-DILRL-QQLRILDLSQNSLQ  510 (582)
Q Consensus       435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l--~~~~~~~~~-~~~~~-~~L~~L~l~~~~l~  510 (582)
                      .+|++..+.+..|..+++|++|++++|.+.......+....++..+.+  .+.+..++. .+..+ ..++.|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            668899998888999999999999999998887777777777777777  345555554 33444 46889999999999


Q ss_pred             ccchhhcCCCCCCEEeCCC-CcCCcCCCcccccccccceeeccCCCCCcchHHHhccchH
Q 007984          511 SIPEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTK  569 (582)
Q Consensus       511 ~l~~~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  569 (582)
                      .++......++|+++++.+ |+++.+|..++..+++|++|++++|+++.++..+|+...+
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~  227 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  227 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchH
Confidence            9987766778899999985 6889999988888899999999999999998888776443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.1e-18  Score=176.64  Aligned_cols=178  Identities=31%  Similarity=0.428  Sum_probs=91.5

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~  125 (582)
                      +++.|+++++.++.+|..+  +++|++|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            5566666666555555433  245666666666555554   334555555555555555554 332  55555555555


Q ss_pred             CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (582)
Q Consensus       126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (582)
                      ++.+|.   .+++|+.|++++|.+..+|.   .+++|++|++++|.++.+                        |. +. 
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~l------------------------p~-l~-  179 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFL------------------------PE-LP-  179 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC------------------------CC-CC-
T ss_pred             CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCc------------------------ch-hh-
Confidence            555544   34555555555555555443   344555555555555444                        43 22 


Q ss_pred             CCCccEEeCCCCcCccCCcCCcCCCCC-------cEEEcCCCcCcccchhhhccCCCcEEEcccCcccc
Q 007984          206 LSRLIRLDLHQNRILSIPSSISGCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~  267 (582)
                       ++|+.|++++|.++.+|. +..  +|       +.|++++|.++.+|..+..+++|+.|++++|.++.
T Consensus       180 -~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          180 -ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             -CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence             444455555544444443 322  34       55555555555555555555555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=3.4e-18  Score=175.02  Aligned_cols=184  Identities=24%  Similarity=0.363  Sum_probs=124.0

Q ss_pred             CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCc
Q 007984           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK  171 (582)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~  171 (582)
                      +|++|++++|.+..+|..+  .++|++|++++|.+..+|   ..+++|++|++++|.+..+|. +..  +|++|++++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            4555555555554444433  144555555555555544   234555555555555555544 332  66666666666


Q ss_pred             ccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhc
Q 007984          172 LTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK  251 (582)
Q Consensus       172 i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~  251 (582)
                      ++.++.    .+++|+.|++++|.+..+|.   .+++|+.|++++|.+..+|. +.  ++|+.|++++|.++.+|. +..
T Consensus       132 l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~  200 (571)
T 3cvr_A          132 LTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV  200 (571)
T ss_dssp             CSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred             CCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence            665544    45667777777777766665   46899999999999999887 65  899999999999999887 544


Q ss_pred             cCCC-------cEEEcccCcccccchhhhcc-cccEEEccCCCCCC-CCccccC
Q 007984          252 LSKL-------GTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSG-LPPEIGK  296 (582)
Q Consensus       252 ~~~L-------~~L~l~~~~~~~~~~~~~~~-~L~~l~l~~~~l~~-~~~~l~~  296 (582)
                        +|       +.|++++|.++.++...... +|+.+++++|.+++ +|..+..
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence              77       99999999999988765544 49999999999987 4444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1e-17  Score=152.47  Aligned_cols=152  Identities=30%  Similarity=0.398  Sum_probs=101.4

Q ss_pred             ccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (582)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  461 (582)
                      -+.++.+++.++.+|..+.  ++|++|++++|.++.+....|..+++|++|++++|.+..++...|..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            3556666666766665443  67777777777777776666777777777777777777777666777777778888777


Q ss_pred             cCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984          462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL  541 (582)
Q Consensus       462 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~  541 (582)
                      .++.+....|.                      .+++|+.|++++|.++.+|..+.++++|++|++++|+++.+++..+.
T Consensus        99 ~l~~l~~~~~~----------------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~  156 (229)
T 3e6j_A           99 QLTVLPSAVFD----------------------RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD  156 (229)
T ss_dssp             CCCCCCTTTTT----------------------TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             cCCccChhHhC----------------------cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence            77665544333                      34556666666666666666666666666666666666666655555


Q ss_pred             cccccceeeccCCCCC
Q 007984          542 LEPSLQALRLDGNPLR  557 (582)
Q Consensus       542 ~~~~L~~L~l~~~~~~  557 (582)
                      .+++|+.|++++|++.
T Consensus       157 ~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          157 RLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TCTTCCEEECTTSCBC
T ss_pred             CCCCCCEEEeeCCCcc
Confidence            5566666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=3.6e-18  Score=166.52  Aligned_cols=233  Identities=20%  Similarity=0.251  Sum_probs=175.4

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCc-ccch-hhh
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG   88 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~-~l~~-~~~   88 (582)
                      ++++++++++++||.++               .+++++|++++|.|+.++. +|.++++|++|+|++|.+. .++. +|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l---------------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---------------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---------------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CEEEecCCCCCccCcCc---------------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            57889999999999877               4579999999999999975 6899999999999999875 4543 678


Q ss_pred             CCCCCcE-EecCCCcCccC-ChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCC-CcCCCCcc-ccccC-CCC
Q 007984           89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM  162 (582)
Q Consensus        89 ~~~~L~~-L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~-~~~~~i~~-~l~~~-~~L  162 (582)
                      ++++++. +.+..|.+..+ +..|..+++|++|++++|++..++. .+....++..+++.+ +.+..++. .|..+ ..+
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            8888775 55566888877 4567889999999999999887764 344566777888765 45665554 34444 468


Q ss_pred             cEEEccCCcccccchhhhcccccCcEEEccC-CccCccch-hhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (582)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  240 (582)
                      +.|++++|+++.++..++. ..+++++.+.+ +.++.++. ++..+++|+.|++++|.++.+|..  .+.+|+.|.+.++
T Consensus       157 ~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             EEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred             hhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence            8899999999888877554 45788888864 67777774 567888899999999988888653  2556666666554


Q ss_pred             -cCcccchhhhccCCCcEEEcccC
Q 007984          241 -ALSALPAELGKLSKLGTLDLHSN  263 (582)
Q Consensus       241 -~i~~l~~~l~~~~~L~~L~l~~~  263 (582)
                       .++.+| .+..+++|+.+++.++
T Consensus       234 ~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCcCcCC-CchhCcChhhCcCCCC
Confidence             455666 4677888888887653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.9e-17  Score=149.60  Aligned_cols=151  Identities=24%  Similarity=0.368  Sum_probs=95.8

Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      +.++.+++.++.+|..+.  ++|++|++++|.++.++...|..+++|++|++++|.+..+.+.+|..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            345555666666655433  456666666666666665556666667777776666666665566666777777777766


Q ss_pred             CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984          463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGL  541 (582)
Q Consensus       463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~  541 (582)
                      ++.+....|                      ..+++|+.|++++|.++.+ |..|.++++|++|++++|+++++++..+.
T Consensus        92 l~~l~~~~f----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           92 ITELPKSLF----------------------EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             CCCCCTTTT----------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCccCHhHc----------------------cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence            655443323                      2345666666666666655 34466677777777777777776666555


Q ss_pred             cccccceeeccCCCCC
Q 007984          542 LEPSLQALRLDGNPLR  557 (582)
Q Consensus       542 ~~~~L~~L~l~~~~~~  557 (582)
                      .+++|+.|++++|++.
T Consensus       150 ~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEEeCCCCcC
Confidence            5577777777777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=6.7e-18  Score=165.22  Aligned_cols=176  Identities=28%  Similarity=0.351  Sum_probs=129.3

Q ss_pred             ccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-ccc-CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~-~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      .+.+++.++.++.+|..+.  +.++.|++++|.++.++. .+. .+++|++|++++|.++.++...|..+++|++|++++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3567777777777776543  457777777777777654 344 677777777777777777666677777777777777


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhh
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF  516 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~  516 (582)
                      |.+..+....|..+++|++|+|++|.+..+.+.                      .+..+++|+.|++++|.++.+|..+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN----------------------AFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------------TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHH----------------------HhCCcccCCEEECCCCcCCeeCHHH
Confidence            777777766677777777777777776654433                      3456688999999999999887653


Q ss_pred             ----cCCCCCCEEeCCCCcCCcCCCcccccccc--cceeeccCCCCCc
Q 007984          517 ----KNLTSLTELDLSDNNISALPPELGLLEPS--LQALRLDGNPLRS  558 (582)
Q Consensus       517 ----~~l~~L~~L~l~~n~l~~l~~~~~~~~~~--L~~L~l~~~~~~~  558 (582)
                          ..+++|+.|+|++|+|+.+|...+..++.  ++.|++++|++..
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence                57899999999999999988766655566  4889999999863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2.3e-17  Score=170.94  Aligned_cols=171  Identities=23%  Similarity=0.335  Sum_probs=114.9

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      +++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+..++ .+..+++|++|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            566777777777776664 46667777777777777776654 667777777777777776654 466677777777777


Q ss_pred             CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (582)
Q Consensus       124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (582)
                      |.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+  +..+++|+.|++++|.+..++ .+
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence            7766653 466667777777777776666 456667777777777776666554  666666777777766666653 45


Q ss_pred             cCCCCccEEeCCCCcCccC
Q 007984          204 GSLSRLIRLDLHQNRILSI  222 (582)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~  222 (582)
                      ..+++|+.|++++|.+...
T Consensus       194 ~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTCTTCSEEECCSEEEECC
T ss_pred             ccCCCCCEEEccCCcCcCC
Confidence            6666666666666665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.2e-17  Score=150.06  Aligned_cols=169  Identities=31%  Similarity=0.447  Sum_probs=117.8

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ..+.+++.++.++.+|..+  .+++++|++++|.++.++. .+..+++|++|++++|+++.++...|..+++|++|++++
T Consensus         8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            3467777888887777655  4578888888888888765 467888888888888888888777778888888888888


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-  515 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-  515 (582)
                      |.++.++...|..+++|++|++++|.++.+.+..|..+                      ++|+.|++++|.++.++.. 
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l----------------------~~L~~L~l~~N~l~~~~~~~  143 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL----------------------TQLKDLRLYQNQLKSVPDGV  143 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------------TTCCEEECCSSCCSCCCTTT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC----------------------CcCCEEECCCCccceeCHHH
Confidence            88888887777888888888888888877665555555                      4555555555555544432 


Q ss_pred             hcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCC
Q 007984          516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  557 (582)
Q Consensus       516 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~  557 (582)
                      +..+++|++|++++|.+..       .+++|+.|++++|.+.
T Consensus       144 ~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          144 FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred             hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence            4555555555555554332       1244555555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.5e-17  Score=147.81  Aligned_cols=154  Identities=18%  Similarity=0.239  Sum_probs=119.3

Q ss_pred             hccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEE
Q 007984          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (582)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  456 (582)
                      ..+++|++|++++|.+.+++ .+..+++|++|++++|.+++..  .+..+++|++|++++|.++......+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            34667888888888888777 5778888888888888776664  46778888888888888877555557788888888


Q ss_pred             eCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc-CCccchhhcCCCCCCEEeCCCCcCCcC
Q 007984          457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISAL  535 (582)
Q Consensus       457 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~n~l~~l  535 (582)
                      ++++|.+++.                      .+..+..+++|++|++++|. ++.+| .+.++++|++|++++|+++.+
T Consensus       118 ~Ls~n~i~~~----------------------~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          118 DISHSAHDDS----------------------ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             ECCSSBCBGG----------------------GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             EecCCccCcH----------------------hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence            8888766532                      24456778999999999997 88887 688999999999999999988


Q ss_pred             CCcccccccccceeeccCCCCCc
Q 007984          536 PPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       536 ~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                      +.  +..+++|+.|++++|++.+
T Consensus       175 ~~--l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          175 RG--IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TT--GGGCSSCCEEEECBC----
T ss_pred             HH--hccCCCCCEEEeeCcccCC
Confidence            73  4555999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.1e-16  Score=158.79  Aligned_cols=331  Identities=13%  Similarity=0.163  Sum_probs=164.6

Q ss_pred             Ccccch-hhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCCcccc
Q 007984           80 LSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDL  156 (582)
Q Consensus        80 ~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~~l  156 (582)
                      ++.|.. +|.+|.+|+.+.+.. .++.+. .+|.+|++|+.+++..+ +..++ ..+.++.+|+.+.+..+-...-..+|
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            344433 677788888888864 355553 34677778887777643 44443 35566667766655443211112234


Q ss_pred             ccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEE
Q 007984          157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY  236 (582)
Q Consensus       157 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  236 (582)
                      ..+..++ ..+. .....++..+|.+|++|+.+.+.++...-...++..+.+|+.+++..+--......+.++..|+.+.
T Consensus       137 ~~~~~~~-~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          137 KGCDFKE-ITIP-EGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTCCCSE-EECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCC
T ss_pred             ecccccc-cccC-ccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhccccccceee
Confidence            4443222 2221 1233445555666666666665543222122344455555555554431111123344444444443


Q ss_pred             cCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCccccc
Q 007984          237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRS  315 (582)
Q Consensus       237 l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~  315 (582)
                      +.++... +........+                      ++.+.+... +.. -...+.++..++.+.+..+.. .+..
T Consensus       215 ~~~~~~~-i~~~~~~~~~----------------------l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~  269 (394)
T 4fs7_A          215 FPNSLYY-LGDFALSKTG----------------------VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGG  269 (394)
T ss_dssp             CCTTCCE-ECTTTTTTCC----------------------CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECS
T ss_pred             cCCCceE-eehhhcccCC----------------------CceEEECCC-ceecccccccccccceeEEcCCCcc-eeec
Confidence            3322111 1111111122                      333333221 111 112345556666665544321 1111


Q ss_pred             cccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcC
Q 007984          316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL  395 (582)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l  395 (582)
                                                                                ..+..+..++.+......+.+ 
T Consensus       270 ----------------------------------------------------------~~F~~~~~l~~~~~~~~~i~~-  290 (394)
T 4fs7_A          270 ----------------------------------------------------------SLFYNCSGLKKVIYGSVIVPE-  290 (394)
T ss_dssp             ----------------------------------------------------------CTTTTCTTCCEEEECSSEECT-
T ss_pred             ----------------------------------------------------------cccccccccceeccCceeecc-
Confidence                                                                      122224445555544432211 


Q ss_pred             CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCc
Q 007984          396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP  475 (582)
Q Consensus       396 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  475 (582)
                       ..+..+.+|+.+.+.+ .++.+...+|.+|++|+.+++.. .++.+...+|.+|.+|+.+++..+ +..+...+|.+|+
T Consensus       291 -~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          291 -KTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             -TTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             -cccccccccccccccc-ccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence             2456677777777754 35556666677777777777753 366677777777777777777655 6666666777776


Q ss_pred             cchhhhhccccccCchhhhccCCCCEE
Q 007984          476 HLQELYLRMQLREAPTDILRLQQLRIL  502 (582)
Q Consensus       476 ~L~~L~l~~~~~~~~~~~~~~~~L~~L  502 (582)
                      +|+++.+...+..+...+.++++|+.+
T Consensus       367 ~L~~i~lp~~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKRLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred             CCCEEEECCCCEEhhheecCCCCCcEE
Confidence            666666644444444455555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=5.7e-17  Score=146.41  Aligned_cols=150  Identities=23%  Similarity=0.323  Sum_probs=74.5

Q ss_pred             EEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCC-hHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      .++++++.++.+|..+.  +.+++|++++|.++.+. ...|..+++|++|++++|.++.+....|..+++|++|++++|.
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            44445555544444322  23445555555554442 2234555555555555555555554445555555555555555


Q ss_pred             CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984          463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGL  541 (582)
Q Consensus       463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~  541 (582)
                      ++.+.+.                      .+..+++|++|++++|.++.+ |..|.++++|++|++++|+++++++..+.
T Consensus        93 l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           93 LENVQHK----------------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             CCCCCGG----------------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             cCccCHh----------------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            4433221                      223344555555555555544 33455555555555555555555444444


Q ss_pred             cccccceeeccCCCCC
Q 007984          542 LEPSLQALRLDGNPLR  557 (582)
Q Consensus       542 ~~~~L~~L~l~~~~~~  557 (582)
                      .+++|+.|++++|++.
T Consensus       151 ~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          151 TLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TCTTCCEEECCSCCEE
T ss_pred             CCCCCCEEEecCcCCc
Confidence            4455555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=5.8e-17  Score=167.94  Aligned_cols=192  Identities=18%  Similarity=0.240  Sum_probs=151.1

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~  125 (582)
                      .+..+.+....+..+. .+..+++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|++++|.
T Consensus        22 ~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             HHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence            3555666666666442 2456778888999998888875 57888999999999998888765 7888899999999988


Q ss_pred             CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (582)
Q Consensus       126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (582)
                      +..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+  ..+..+++|+.|++++|.+..++. +..
T Consensus        99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~  173 (605)
T 1m9s_A           99 IKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG  173 (605)
T ss_dssp             CCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred             CCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence            88775 677888899999988888877 4588888888888888888877  337888888888888888877655 777


Q ss_pred             CCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccc
Q 007984          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP  246 (582)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~  246 (582)
                      +++|+.|++++|.+..++ .+..+++|+.|++++|.+...|
T Consensus       174 l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            888888888888887763 5777888888888888777543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=8e-18  Score=156.52  Aligned_cols=165  Identities=20%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~  125 (582)
                      +++.++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence            3444455555555443 3444555555555555555544 44555555555555555555444 4555555555555555


Q ss_pred             CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (582)
Q Consensus       126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (582)
                      +..++....  ++|+.|++++|.+..++ .+..+++|++|++++|++++++  .+..+++|++|++++|.+..+ ..+..
T Consensus        97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~  170 (263)
T 1xeu_A           97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTR  170 (263)
T ss_dssp             CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred             cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhcc
Confidence            554433222  45555555555555442 3445555555555555544442  144444444444444444333 23333


Q ss_pred             CCCccEEeCCCCcC
Q 007984          206 LSRLIRLDLHQNRI  219 (582)
Q Consensus       206 ~~~L~~L~l~~~~~  219 (582)
                      +++|+.|++++|.+
T Consensus       171 l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          171 LKKVNWIDLTGQKC  184 (263)
T ss_dssp             CCCCCEEEEEEEEE
T ss_pred             CCCCCEEeCCCCcc
Confidence            44444444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=3e-17  Score=147.37  Aligned_cols=152  Identities=32%  Similarity=0.440  Sum_probs=131.1

Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      +.++.+++.++.+|..+  .++|++|++++|.++.++...+..+++|++|++++|.++.++...|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            57788888888888654  4689999999999999888888899999999999999999888878899999999999998


Q ss_pred             CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984          463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGL  541 (582)
Q Consensus       463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~  541 (582)
                      ++.+....                      +..+++|++|++++|.++.++.. +.++++|++|++++|+++++++..+.
T Consensus        88 l~~~~~~~----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  145 (208)
T 2o6s_A           88 LQSLPNGV----------------------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD  145 (208)
T ss_dssp             CCCCCTTT----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCccCHhH----------------------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence            87654433                      34568899999999999988654 78999999999999999999998777


Q ss_pred             cccccceeeccCCCCCc
Q 007984          542 LEPSLQALRLDGNPLRS  558 (582)
Q Consensus       542 ~~~~L~~L~l~~~~~~~  558 (582)
                      .+++|+.|++++|++..
T Consensus       146 ~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TCTTCCEEECCSCCBCC
T ss_pred             cCCCccEEEecCCCeec
Confidence            77999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=5e-17  Score=151.13  Aligned_cols=171  Identities=23%  Similarity=0.264  Sum_probs=150.4

Q ss_pred             HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhh
Q 007984            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI   87 (582)
Q Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~   87 (582)
                      ...+..++++++.+++++. +..             +++|++|+++++.++.++ .+..+++|++|++++|.++.++. +
T Consensus        18 l~~l~~l~l~~~~i~~~~~-~~~-------------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l   81 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVS-QKE-------------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L   81 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEEC-HHH-------------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             HHHHHHHHhcCCCcccccc-hhh-------------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence            4556677888888888872 222             788999999999999887 78899999999999999998876 9


Q ss_pred             hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEc
Q 007984           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (582)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l  167 (582)
                      ..+++|++|++++|.+..++....  ++|++|++++|.++.++ .+.++++|+.|++++|.+..++ .+..+++|++|++
T Consensus        82 ~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL  157 (263)
T ss_dssp             TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence            999999999999999998875433  99999999999999885 6889999999999999999985 7999999999999


Q ss_pred             cCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (582)
                      ++|+++++  ..+..+++|+.|++++|.+...+
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            99999988  44899999999999999887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=2.7e-16  Score=155.89  Aligned_cols=323  Identities=13%  Similarity=0.183  Sum_probs=177.3

Q ss_pred             hhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCC-cccccCCCC
Q 007984           63 DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNL  139 (582)
Q Consensus        63 ~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L  139 (582)
                      +|..|.+|+.+.+... ++.|.+ +|.+|.+|+.+++.++ +..+. ..|.++++|+.+.+..+ +..+. ..|.++.. 
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~-  141 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF-  141 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC-
T ss_pred             HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc-
Confidence            4555555555555432 444422 4555555555555433 33332 23445555555444332 22221 12333322 


Q ss_pred             CeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCc
Q 007984          140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNR  218 (582)
Q Consensus       140 ~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~  218 (582)
                      ....+.......-..+|..|++|+.+.+..+ +..++..+|.++.+|+.+.+..+ +..+ ..++..+..|+.+.+..+.
T Consensus       142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence            2222211111111234666666777666543 45566666777777777766655 2222 2355666667666665543


Q ss_pred             CccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCC
Q 007984          219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMT  298 (582)
Q Consensus       219 ~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~  298 (582)
                      .. +......+.+|+.+.+......--...+..+..++.+.+..+... +                     ....|..+.
T Consensus       220 ~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i---------------------~~~~F~~~~  276 (394)
T 4fs7_A          220 YY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I---------------------GGSLFYNCS  276 (394)
T ss_dssp             CE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E---------------------CSCTTTTCT
T ss_pred             eE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e---------------------ecccccccc
Confidence            22 223334456677777654332212234566677777766543211 1                     112345566


Q ss_pred             CCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhc
Q 007984          299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE  378 (582)
Q Consensus       299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~  378 (582)
                      .++.+......+   +.                                                          ..+..
T Consensus       277 ~l~~~~~~~~~i---~~----------------------------------------------------------~~F~~  295 (394)
T 4fs7_A          277 GLKKVIYGSVIV---PE----------------------------------------------------------KTFYG  295 (394)
T ss_dssp             TCCEEEECSSEE---CT----------------------------------------------------------TTTTT
T ss_pred             ccceeccCceee---cc----------------------------------------------------------ccccc
Confidence            666555433211   00                                                          12233


Q ss_pred             cCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEe
Q 007984          379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  457 (582)
                      +.+|+++.+.++ ++.+.. +|..|.+|+.+++.. .++.+...+|.+|++|+.+.+..+ ++.+...+|.+|++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            566777777653 445544 678888888888864 477777778889999999999765 8888888899999999999


Q ss_pred             CCCCcCCCCCCCCCCCCccchhh
Q 007984          458 LSYNIASLPENPPFSSLPHLQEL  480 (582)
Q Consensus       458 l~~n~l~~~~~~~~~~~~~L~~L  480 (582)
                      +..+ +... ..+|.+|++|+++
T Consensus       373 lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          373 LPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             EEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             ECCC-CEEh-hheecCCCCCcEE
Confidence            8765 3333 3468888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.71  E-value=1.6e-16  Score=156.39  Aligned_cols=183  Identities=14%  Similarity=0.219  Sum_probs=135.9

Q ss_pred             CChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC
Q 007984          372 IPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (582)
Q Consensus       372 i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  450 (582)
                      ++...+.+.+|+++.+..+ +..++. +|..|++|+.+++.. .++.+...+|.+ .+|+.+.+ .+.++.+...+|.+|
T Consensus       195 I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c  270 (401)
T 4fdw_A          195 LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYC  270 (401)
T ss_dssp             ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTC
T ss_pred             echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEe-CCCccEEChhHhhCC
Confidence            3333344566777777743 555554 677888888888876 366666667777 67888888 456777888888888


Q ss_pred             CCCcEEeCCCCcCC-----CCCCCCCCCCccchhhhhccccccCch-hhhccCCCCEEecCCCcCCccc-hhhcCCCCCC
Q 007984          451 PMLQILDLSYNIAS-----LPENPPFSSLPHLQELYLRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLT  523 (582)
Q Consensus       451 ~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~  523 (582)
                      ++|+.+++.++.+.     .+...+|.+|++|+.+.+.+.+..+.. .+.+|++|+.+++..+ ++.++ ..|.+| +|+
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK  348 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence            88888888877554     466778888888888888666666554 5778899999999655 77664 458899 999


Q ss_pred             EEeCCCCcCCcCCCccccccc-ccceeeccCCCCCcch
Q 007984          524 ELDLSDNNISALPPELGLLEP-SLQALRLDGNPLRSIR  560 (582)
Q Consensus       524 ~L~l~~n~l~~l~~~~~~~~~-~L~~L~l~~~~~~~~~  560 (582)
                      ++++.+|.+..++...|..++ +++.|++-.+.+..-.
T Consensus       349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~  386 (401)
T 4fdw_A          349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK  386 (401)
T ss_dssp             EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred             EEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence            999999998888888887764 7889999887655433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.3e-16  Score=144.00  Aligned_cols=152  Identities=28%  Similarity=0.451  Sum_probs=128.3

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ..+.+++.++.++.+|..+.  +++++|++++|.++.++. .+..+++|++|++++|.++.+.+..|.++++|++|++++
T Consensus        12 ~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           12 SNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             ETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            34688999999999998764  789999999999999876 789999999999999999998888899999999999999


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccch-h
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-G  515 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~  515 (582)
                      |.++.++...|..+++|++|++++|.++.+.+..|..                      +++|+.|++++|.++.++. .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------l~~L~~L~L~~N~l~~~~~~~  147 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD----------------------LHNLNLLSLYDNKLQTIAKGT  147 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCSCCCTTT
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC----------------------CCCCCEEECCCCcCCEECHHH
Confidence            9999999888999999999999999998876655554                      4667777777777776654 3


Q ss_pred             hcCCCCCCEEeCCCCcCC
Q 007984          516 FKNLTSLTELDLSDNNIS  533 (582)
Q Consensus       516 ~~~l~~L~~L~l~~n~l~  533 (582)
                      |..+++|++|++++|.+.
T Consensus       148 ~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTCTTCCEEECCSSCEE
T ss_pred             HhCCCCCCEEEeCCCCcC
Confidence            667777777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.2e-16  Score=141.96  Aligned_cols=127  Identities=13%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC-CccccccCCCCcEEEccCC
Q 007984           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVEGN  170 (582)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~L~~L~l~~~  170 (582)
                      +|++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|++++|
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            3333333333333333 2333344444444444333221 33334444444444443332 2233444444444444444


Q ss_pred             cccccchhhhcccccCcEEEccCCc-cCccchhhcCCCCccEEeCCCCcCcc
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQNRILS  221 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~  221 (582)
                      .++......++.+++|++|++++|. +..++ .+..+++|+.|++++|.+..
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            4443333333334444444444443 33332 23333444444444444333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=2e-16  Score=142.78  Aligned_cols=153  Identities=26%  Similarity=0.383  Sum_probs=126.8

Q ss_pred             ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc--cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL  434 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  434 (582)
                      +..+.+++.++.++.+|..+  ...+++|++++|.++.++.  .+..+++|++|++++|.++.++...|..+++|++|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ECCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            34568999999999998866  4567999999999998743  5889999999999999999998888999999999999


Q ss_pred             CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-c
Q 007984          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-P  513 (582)
Q Consensus       435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~  513 (582)
                      ++|.++.+....|..+++|++|++++|.++++.+..|..+                      ++|+.|++++|.++.+ |
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL----------------------SSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC----------------------TTCSEEECTTSCCCCBCT
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC----------------------ccCCEEECCCCcCCEECH
Confidence            9999999998889999999999999999988766555544                      5667777777777765 4


Q ss_pred             hhhcCCCCCCEEeCCCCcCC
Q 007984          514 EGFKNLTSLTELDLSDNNIS  533 (582)
Q Consensus       514 ~~~~~l~~L~~L~l~~n~l~  533 (582)
                      ..|..+++|++|++++|.+.
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEE
T ss_pred             HHhcCCCCCCEEEecCcCCc
Confidence            55667777777777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4.3e-16  Score=141.66  Aligned_cols=154  Identities=31%  Similarity=0.409  Sum_probs=135.6

Q ss_pred             cccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984          356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL  434 (582)
Q Consensus       356 ~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  434 (582)
                      .+..+.+++.++.++.+|..+.  ++|+.|++++|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|++
T Consensus        18 ~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           18 SCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             EEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            3556789999999999998664  8999999999999987 457899999999999999999999888899999999999


Q ss_pred             CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccch
Q 007984          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE  514 (582)
Q Consensus       435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~  514 (582)
                      ++|.++.++...|..+++|++|++++|.++.+                       +..+..+++|+.|++++|.++.++.
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-----------------------p~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-----------------------PRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-----------------------CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccccc-----------------------CcccccCCCCCEEECCCCcCCccCH
Confidence            99999999988899999999999999987643                       2345677899999999999998874


Q ss_pred             -hhcCCCCCCEEeCCCCcCCc
Q 007984          515 -GFKNLTSLTELDLSDNNISA  534 (582)
Q Consensus       515 -~~~~l~~L~~L~l~~n~l~~  534 (582)
                       .+..+++|++|++++|.+..
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBCT
T ss_pred             HHHhCCCCCCEEEeeCCCccC
Confidence             48889999999999998874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=2.1e-16  Score=154.65  Aligned_cols=162  Identities=30%  Similarity=0.371  Sum_probs=137.8

Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhh-CCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  461 (582)
                      +.++++++.++.+|..+.  +.++.|++++|.++.++...+. .+++|++|++++|.++.+....|..+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            678899999999887554  5689999999999988877777 8999999999999999998888999999999999999


Q ss_pred             cCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCccc
Q 007984          462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELG  540 (582)
Q Consensus       462 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~  540 (582)
                      .++.+....                      +..+++|+.|++++|.+..+ +..|.++++|++|+|++|+|+.+|..++
T Consensus        99 ~l~~~~~~~----------------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           99 HLHTLDEFL----------------------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             CCCEECTTT----------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             cCCcCCHHH----------------------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            887654433                      34568899999999999977 5679999999999999999999999876


Q ss_pred             ---ccccccceeeccCCCCCcchHHHhccch
Q 007984          541 ---LLEPSLQALRLDGNPLRSIRRTILDRGT  568 (582)
Q Consensus       541 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~  568 (582)
                         ..+++|+.|++++|.+..++...|....
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence               4469999999999999999988776543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.7e-16  Score=151.82  Aligned_cols=101  Identities=15%  Similarity=0.223  Sum_probs=85.1

Q ss_pred             cCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCC-EeeCCCCCCccCCCccccCCCCCcEE
Q 007984          379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL  456 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L  456 (582)
                      +++|+++++++|.++.++. +|..|++|+.+++.++ ++.++..+|.+|++|+ .+++.+ .++.+...+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6788888888888888776 6888888888888886 7778888888888888 888887 7888888888888888888


Q ss_pred             eCCCCcCCCCCCCCCCCCccchhhh
Q 007984          457 DLSYNIASLPENPPFSSLPHLQELY  481 (582)
Q Consensus       457 ~l~~n~l~~~~~~~~~~~~~L~~L~  481 (582)
                      ++++|.+..+...+|.+|++|++++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            8888888888888888888887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=5e-17  Score=156.99  Aligned_cols=101  Identities=21%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             CCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCch-hhhccCCCC-EEecCCCcCCccc-hhhcCCCCCCEEe
Q 007984          450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT-DILRLQQLR-ILDLSQNSLQSIP-EGFKNLTSLTELD  526 (582)
Q Consensus       450 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~-~L~l~~~~l~~l~-~~~~~l~~L~~L~  526 (582)
                      |++|+.+++++|.++.+...+|.+|++|+++.+..++..++. .+.++++|+ .+++.+ .++.++ ..|.+|++|++++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            556666666665565555555666655555555334444433 455667777 777777 666664 4588888888888


Q ss_pred             CCCCcCCcCCCcccccccccceeec
Q 007984          527 LSDNNISALPPELGLLEPSLQALRL  551 (582)
Q Consensus       527 l~~n~l~~l~~~~~~~~~~L~~L~l  551 (582)
                      +.+|+++.++..+|..|++|+.|+.
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            8888888888888888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2.8e-18  Score=176.74  Aligned_cols=200  Identities=19%  Similarity=0.184  Sum_probs=105.2

Q ss_pred             ccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCC-------------Cc-ccchhhhCCCCCcEEe-cCCCcCccC
Q 007984           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI  106 (582)
Q Consensus        42 ~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~-------------~~-~l~~~~~~~~~L~~L~-l~~~~~~~l  106 (582)
                      +.+++|+.|+++++.++.+|+.++.+++|+.|+++++.             .. .+|..+..+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34666666666666666666666666666666665442             11 2233444455555554 333322211


Q ss_pred             ChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccC
Q 007984          107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML  186 (582)
Q Consensus       107 ~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  186 (582)
                      +.          +.+++|.+..++     ...|+.|++++|.+..+|. +..+++|+.|++++|.++.++. .++.+++|
T Consensus       426 ~~----------l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L  488 (567)
T 1dce_A          426 RS----------KFLLENSVLKME-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCL  488 (567)
T ss_dssp             HH----------HHHHHHHHHHHH-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTC
T ss_pred             hh----------hhhhcccccccC-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCC
Confidence            11          111111111111     1135555555555555544 5555555555555555554433 25555555


Q ss_pred             cEEEccCCccCccchhhcCCCCccEEeCCCCcCccC--CcCCcCCCCCcEEEcCCCcCcccchh----hhccCCCcEEE
Q 007984          187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLD  259 (582)
Q Consensus       187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~l~~~----l~~~~~L~~L~  259 (582)
                      +.|++++|.+..+| .+..+++|+.|++++|.+..+  |..+..+++|+.|++++|.++.+|..    +..+++|+.|+
T Consensus       489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          489 EVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            55555555555555 555666666666666666655  55666666666666666666644332    33467777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=1.1e-15  Score=150.54  Aligned_cols=202  Identities=14%  Similarity=0.222  Sum_probs=167.0

Q ss_pred             cccEEEecCCCCccCChh-hhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      .++.+.+.+ .+..++.. +..|++|+.+++.++.++.++.....+.+|+.+.+.. .++.+...+|.+|++|+.+++..
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence            456666665 55555544 4458999999999999999887544479999999984 58888888999999999999986


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccc------cC-chhhhccCCCCEEecCCCcC
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR------EA-PTDILRLQQLRILDLSQNSL  509 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~------~~-~~~~~~~~~L~~L~l~~~~l  509 (582)
                       .++.+...+|.+ .+|+.+.+. +.+..+...+|.+|++|+++.+..+..      .+ ...+.+|++|+.+++. +.+
T Consensus       236 -~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          236 -NVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI  311 (401)
T ss_dssp             -TCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred             -CccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence             488899999988 789999995 458888889999999999999944332      23 3468899999999999 458


Q ss_pred             Cccc-hhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccc
Q 007984          510 QSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG  567 (582)
Q Consensus       510 ~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  567 (582)
                      +.++ ..|.+|++|++++|..+ ++.++..+|..| +|+.+++.+|....+...+|..+
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            8775 45999999999999665 889999999998 99999999999988888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.6e-17  Score=171.09  Aligned_cols=191  Identities=18%  Similarity=0.189  Sum_probs=127.2

Q ss_pred             HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCC--------------ccchhHhhcCCCCCcEE
Q 007984            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL   73 (582)
Q Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--------------i~~~~~~~~~~~~L~~L   73 (582)
                      .+.++.|++++++++.+|..+..             +++|++|+++++.              ....|+.+..+++|+.|
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence            45678999999999999988854             6788888886653              22445677888888888


Q ss_pred             E-cCCCCCcccch------hhhC--CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEc
Q 007984           74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA  144 (582)
Q Consensus        74 ~-L~~~~~~~l~~------~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l  144 (582)
                      + ++.+.+..++.      .+..  ...|++|++++|.++.+|. +..+++|++|++++|.++.+|..+.++++|+.|++
T Consensus       415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  493 (567)
T 1dce_A          415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA  493 (567)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred             cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence            8 56554443322      1111  1257777777777777765 77777777777777777777777777777777777


Q ss_pred             CCCcCCCCccccccCCCCcEEEccCCcccccc-hhhhcccccCcEEEccCCccCccchh----hcCCCCccEEe
Q 007984          145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLD  213 (582)
Q Consensus       145 ~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----l~~~~~L~~L~  213 (582)
                      ++|.+..+| .+..+++|++|++++|+++.+. +..++.+++|+.|++++|.+...+..    +..+++|+.|+
T Consensus       494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            777777766 6667777777777777766664 44466666666666666666544322    22245555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.63  E-value=2.8e-14  Score=141.39  Aligned_cols=82  Identities=13%  Similarity=0.290  Sum_probs=46.0

Q ss_pred             cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccc
Q 007984          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (582)
Q Consensus       398 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  477 (582)
                      +|..|..|+.+.+.++ +..+...+|.+|++|+.+.+. +.+..+...+|.+|.+|+.+++..+ ++.+...+|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            4556666666666432 233444556666666666664 3455666666666666666666543 444555555555544


Q ss_pred             hhhhh
Q 007984          478 QELYL  482 (582)
Q Consensus       478 ~~L~l  482 (582)
                      +++.+
T Consensus       337 ~~i~i  341 (394)
T 4gt6_A          337 ERIAI  341 (394)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            44444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.60  E-value=5.4e-14  Score=139.30  Aligned_cols=104  Identities=14%  Similarity=0.301  Sum_probs=80.3

Q ss_pred             hhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcE
Q 007984          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (582)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  455 (582)
                      +..+..|+.+.+.+....--..+|..|++|+.+.+. +.++.++..+|.+|.+|+.+++.. .++.|...+|.+|.+|+.
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCE
Confidence            345788888888765432223368889999999985 567778888899999999999975 488888889999999999


Q ss_pred             EeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984          456 LDLSYNIASLPENPPFSSLPHLQELYL  482 (582)
Q Consensus       456 L~l~~n~l~~~~~~~~~~~~~L~~L~l  482 (582)
                      +.+..+ ++.+...+|.+|++|+++.+
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            999764 77777777777766666555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.1e-15  Score=130.22  Aligned_cols=132  Identities=18%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             CCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCc-CCcccccCCCCCeEEc
Q 007984           68 PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKA  144 (582)
Q Consensus        68 ~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l  144 (582)
                      ++|++|++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            44444444444444  4444444445555555555544444 334445555555555555544 3333444555555555


Q ss_pred             CCCcCCCCc--cccccCCCCcEEEccCCcccccch---hhhcccccCcEEEccCCccCccc
Q 007984          145 SNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGMP  200 (582)
Q Consensus       145 ~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~~~~~~  200 (582)
                      ++|.+..++  ..+..+++|++|++++|.++.++.   ..+..+++|++|++++|.+..+|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            555555443  345555555556655555555544   34555666666666666555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=4.3e-15  Score=128.19  Aligned_cols=132  Identities=19%  Similarity=0.157  Sum_probs=60.6

Q ss_pred             CCCcEEecCCCcCc--cCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC-CccccccCCCCcEEEc
Q 007984           91 HMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDV  167 (582)
Q Consensus        91 ~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~L~~L~l  167 (582)
                      ++|++|++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. ++..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            44444455444444  4444444444445555544444444 344444444555554444443 3333334444555555


Q ss_pred             cCCcccccch-hhhcccccCcEEEccCCccCccch----hhcCCCCccEEeCCCCcCccCC
Q 007984          168 EGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRILSIP  223 (582)
Q Consensus       168 ~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~  223 (582)
                      ++|.++.++. ..+..+++|++|++++|.+..++.    .+..+++|+.|++++|.+..+|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            4444444322 234444444455554444444433    3444444455544444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=5.5e-15  Score=128.45  Aligned_cols=135  Identities=22%  Similarity=0.218  Sum_probs=96.2

Q ss_pred             CCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChh-hhccCCc
Q 007984           38 GDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATAL  116 (582)
Q Consensus        38 ~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L  116 (582)
                      ...|.++.+|++|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.+..++.. +..+++|
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4556778888888888888887754333344888888888888776 5677778888888888887777644 3677788


Q ss_pred             cEEEccCCcCCcCCc--ccccCCCCCeEEcCCCcCCCCccc----cccCCCCcEEEccCCccc
Q 007984          117 VKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLT  173 (582)
Q Consensus       117 ~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~i~~~----l~~~~~L~~L~l~~~~i~  173 (582)
                      ++|++++|.+..+|.  .+..+++|+.|++++|.+..++..    +..+++|+.|+++++...
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888777776665  566777777777777777666553    666666666666665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=3.6e-15  Score=158.65  Aligned_cols=195  Identities=19%  Similarity=0.235  Sum_probs=101.6

Q ss_pred             hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhC
Q 007984           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (582)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~   89 (582)
                      .+..++++.+.+..+|..+...+.-        .--.+..++++.+.+...++.+..++.|+.|+|++|.+..++..+..
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  245 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFK  245 (727)
T ss_dssp             --------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGG
T ss_pred             ccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcC
Confidence            3556666666666655544321000        00012222333333443455677788888888888888877777777


Q ss_pred             CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccC
Q 007984           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (582)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~  169 (582)
                      +++|++|+|++|.+..+|..+..+++|++|++++|.++.+|..+.++++|++|++++|.+..+|..|..+++|++|++++
T Consensus       246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            88888888888888888877888888888888888888888778888888888888888888887788888888888888


Q ss_pred             Ccccccchhhhccccc-CcEEEccCCccCccchhhcCCCCccEEeCCCC
Q 007984          170 NKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN  217 (582)
Q Consensus       170 ~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  217 (582)
                      |.+....+..+..... ...+++.+|.+....     ...|+.|+++.+
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC---------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcC-----ccccceeEeecc
Confidence            8877655554443321 223456666553211     134556666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.6e-15  Score=123.80  Aligned_cols=107  Identities=24%  Similarity=0.324  Sum_probs=58.1

Q ss_pred             cCccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCcc-CChhhhccCCccEEEc
Q 007984           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC  121 (582)
Q Consensus        45 ~~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l  121 (582)
                      +++++|++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45666666666665  5555555666666666666665555 445555556666665555554 4444444555555555


Q ss_pred             cCCcCCcCC--cccccCCCCCeEEcCCCcCCCC
Q 007984          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSL  152 (582)
Q Consensus       122 ~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i  152 (582)
                      ++|.+..++  ..+..+++|++|++++|.+..+
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            555555432  3444444444444444444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.5e-14  Score=122.01  Aligned_cols=125  Identities=22%  Similarity=0.271  Sum_probs=78.8

Q ss_pred             CCCCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCc-CCcccccCCCCCeE
Q 007984           66 NLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDF  142 (582)
Q Consensus        66 ~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L  142 (582)
                      ..++|+.|++++|.++  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3456777777777776  5666666777777777777776666 556666777777777776665 55555556666666


Q ss_pred             EcCCCcCCCCc--cccccCCCCcEEEccCCcccccch---hhhcccccCcEEEc
Q 007984          143 KASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIA  191 (582)
Q Consensus       143 ~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l  191 (582)
                      ++++|.+..++  ..+..+++|++|++++|+++.++.   ..+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            66666666543  456666666666666666655544   33444555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.9e-13  Score=120.25  Aligned_cols=106  Identities=27%  Similarity=0.393  Sum_probs=63.4

Q ss_pred             cEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCC
Q 007984          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (582)
Q Consensus       360 ~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  439 (582)
                      +.+++.++.++.+|..+  .+++++|++++|.++.+|..+..+++|++|++++|.++.++...|..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            45666666666665543  2456666666666666665566666666666666666666555556666666666666666


Q ss_pred             ccCCCccccCCCCCcEEeCCCCcCCCCC
Q 007984          440 RQVPSDGFKDIPMLQILDLSYNIASLPE  467 (582)
Q Consensus       440 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~  467 (582)
                      +.+.+..|..+++|++|++++|.++.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence            6655555556666666666666555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=8.6e-14  Score=122.52  Aligned_cols=125  Identities=25%  Similarity=0.341  Sum_probs=112.5

Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      +.++++++.++.+|..+.  ++|++|++++|.++.++ ..|..+++|++|++++|.++.+....|..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            678999999999987553  68999999999999887 568999999999999999999998889999999999999999


Q ss_pred             CCCCCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCC
Q 007984          463 ASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQ  510 (582)
Q Consensus       463 l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~  510 (582)
                      ++.+.+.+|..+++|+.|++ .+.+..++. .+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99999889999999999999 777777776 4778999999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.51  E-value=1.3e-13  Score=121.50  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=79.4

Q ss_pred             ccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc--cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      .+.++++++.++.+|..+.  .++++|++++|.++.++.  .+..+++|++|++++|.++++.+..|..+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3566666666666666443  266666776666666554  256666666666666666666555566666666666666


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCC
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~  510 (582)
                      |+++.+....|..+++|++|++++|.+++..+..+                      ..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----------------------EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----------------------TTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----------------------hcCCCCCEEEeCCCCcc
Confidence            66666666556666666666666666654433322                      33456666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4.2e-14  Score=122.84  Aligned_cols=132  Identities=20%  Similarity=0.174  Sum_probs=84.7

Q ss_pred             hcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCccc-ccCCCCCeE
Q 007984           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSDF  142 (582)
Q Consensus        64 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L  142 (582)
                      +..+.+|++|++++|.++.++......++|++|++++|.+..+ ..+..+++|++|++++|.+..+|..+ ..+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            4566777777777777776644333334777777777777765 45666777777777777777665433 667777777


Q ss_pred             EcCCCcCCCCcc--ccccCCCCcEEEccCCcccccchh---hhcccccCcEEEccCCcc
Q 007984          143 KASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLL  196 (582)
Q Consensus       143 ~l~~~~~~~i~~--~l~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~  196 (582)
                      ++++|.+..++.  .+..+++|++|++++|.+..++..   .+..+++|+.++++++..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            777777766655  566666666666666666655443   355555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=5e-13  Score=116.18  Aligned_cols=81  Identities=25%  Similarity=0.416  Sum_probs=45.0

Q ss_pred             cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  462 (582)
                      +.++++++.++.+|..+  .++|++|++++|+++.++...+..+++|++|++++|.++.++...|..+++|++|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            55666666666655432  2456666666666655555555555566666666555555554444555555555555554


Q ss_pred             CCC
Q 007984          463 ASL  465 (582)
Q Consensus       463 l~~  465 (582)
                      +++
T Consensus        88 l~~   90 (177)
T 2o6r_A           88 LQS   90 (177)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=4.5e-13  Score=116.48  Aligned_cols=128  Identities=32%  Similarity=0.434  Sum_probs=69.2

Q ss_pred             CEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccc
Q 007984          406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ  485 (582)
Q Consensus       406 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~  485 (582)
                      +.+++++++++.++..   -.++|++|++++|.+..++...|..+++|++|++++|.++.+.+..|              
T Consensus        10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------   72 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--------------   72 (177)
T ss_dssp             TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--------------
T ss_pred             CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--------------
Confidence            4555655555555432   23556666666666665555555556666666666665554432222              


Q ss_pred             cccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984          486 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  558 (582)
Q Consensus       486 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~  558 (582)
                              ..+++|+.|++++|.++.++.. +..+++|++|++++|+++.+|+..+..+++|+.|++++|++..
T Consensus        73 --------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           73 --------DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             --------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --------cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                    2334555555555555555432 4555556666666665555555554444556666666655543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.49  E-value=1.7e-12  Score=128.03  Aligned_cols=105  Identities=13%  Similarity=0.168  Sum_probs=46.6

Q ss_pred             ccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccch
Q 007984          399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ  478 (582)
Q Consensus       399 l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  478 (582)
                      +..+..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..+...+|..|.+|+.+.+.++.+..+...+|.+|.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            344444444444332 3333333444444444444432 24444444444444444444444444444444444444444


Q ss_pred             hhhhccccccCch-hhhccCCCCEEecC
Q 007984          479 ELYLRMQLREAPT-DILRLQQLRILDLS  505 (582)
Q Consensus       479 ~L~l~~~~~~~~~-~~~~~~~L~~L~l~  505 (582)
                      ++.+...+..+.. .+.+|++|+.+.+.
T Consensus       314 ~i~lp~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          314 SVTLPTALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred             EEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence            4444333333322 34444555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.49  E-value=2.2e-12  Score=127.21  Aligned_cols=308  Identities=12%  Similarity=0.123  Sum_probs=150.2

Q ss_pred             ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEEeCCCCcCccC-CcCCcCCCCC
Q 007984          155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSL  232 (582)
Q Consensus       155 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L  232 (582)
                      ++....+|+.+.+.. .++.|+..+|.+|.+|+.+.+..+ +..+. .+|..+ +|+.+.+..+ +..+ ..+|..+ +|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            466677888888865 588888888999999998888755 44443 355555 5666666543 3322 2233333 55


Q ss_pred             cEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCc
Q 007984          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR  311 (582)
Q Consensus       233 ~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~  311 (582)
                      +.+.+.++....-...+.. .+++.+.+                      ..+ +.. -...+..+.+++.+.+......
T Consensus       116 ~~i~lp~~~~~i~~~~F~~-~~l~~~~~----------------------~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~  171 (379)
T 4h09_A          116 DDFEFPGATTEIGNYIFYN-SSVKRIVI----------------------PKS-VTTIKDGIGYKAENLEKIEVSSNNKN  171 (379)
T ss_dssp             SEEECCTTCCEECTTTTTT-CCCCEEEE----------------------CTT-CCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred             ccccCCCcccccccccccc-ceeeeeec----------------------cce-eeccccchhcccccccccccccccce
Confidence            5555543321111111211 12333322                      211 111 1233556667776666554321


Q ss_pred             cccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCc
Q 007984          312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS  391 (582)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~  391 (582)
                      ......+                                            ...  ........+..+..+..+.+....
T Consensus       172 ~~~~~~~--------------------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
T 4h09_A          172 YVAENYV--------------------------------------------LYN--KNKTILESYPAAKTGTEFTIPSTV  205 (379)
T ss_dssp             EEEETTE--------------------------------------------EEE--TTSSEEEECCTTCCCSEEECCTTC
T ss_pred             eecccce--------------------------------------------ecc--cccceeccccccccccccccccce
Confidence            1110000                                            000  000111112223344555444432


Q ss_pred             CCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCC
Q 007984          392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF  471 (582)
Q Consensus       392 l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  471 (582)
                      .......+..+.+|+.+.+.. .+..+....|..+.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +..+...+|
T Consensus       206 ~~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF  282 (379)
T 4h09_A          206 KTVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC  282 (379)
T ss_dssp             CEECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred             eEEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence            222223455666677776643 344455555667777777777544 66666666777777777776543 444555555


Q ss_pred             CCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCccccc
Q 007984          472 SSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLL  542 (582)
Q Consensus       472 ~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~  542 (582)
                      .+|++|+++.+ .+.+..+.. .+.+|++|+.+++..+ ++.+. .+|.+|.+|+++.+..+ ++.+...+|.+
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            55555555554 222333322 3444444444444322 33332 23444444444444332 44444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=1.3e-13  Score=121.38  Aligned_cols=109  Identities=28%  Similarity=0.414  Sum_probs=99.8

Q ss_pred             ccccEEEecCCCCccCChh--hhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEee
Q 007984          357 VTSKELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK  433 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~--~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (582)
                      ..++++++.++.+..++..  +..+++|++|++++|.++.+ |..+..+++|++|++++|++++++...|..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            4789999999999988764  77899999999999999987 56899999999999999999998888889999999999


Q ss_pred             CCCCCCccCCCccccCCCCCcEEeCCCCcCCC
Q 007984          434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (582)
Q Consensus       434 l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~  465 (582)
                      +++|+++.+.+..+..+++|++|++++|.+..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99999999888889999999999999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=3.2e-13  Score=143.74  Aligned_cols=134  Identities=29%  Similarity=0.357  Sum_probs=84.7

Q ss_pred             hHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCC
Q 007984          420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQL  499 (582)
Q Consensus       420 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L  499 (582)
                      ...+..+++|+.|++++|.+..++.. +..+++|++|+|++|.++                       .++..+..+++|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L  272 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLT-----------------------ELPAEIKNLSNL  272 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCS-----------------------CCCGGGGGGTTC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCc-----------------------ccChhhhCCCCC
Confidence            34455666666666666666655544 335666666666666554                       234455667777


Q ss_pred             CEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccc-hHHHHHHHHhc
Q 007984          500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG-TKAVLKYLKDK  578 (582)
Q Consensus       500 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~  578 (582)
                      +.|+|++|.|+.+|..+.++++|++|+|++|+|+.+|..+ ..+++|+.|+|++|++....+..+... ......++.++
T Consensus       273 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N  351 (727)
T 4b8c_D          273 RVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN  351 (727)
T ss_dssp             CEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST-TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh-hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence            7888888877777777777778888888888777777763 334778888888887776666666543 33333455554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=9.4e-15  Score=129.68  Aligned_cols=127  Identities=29%  Similarity=0.328  Sum_probs=85.0

Q ss_pred             CccEEEcCCC--CccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        46 ~l~~L~l~~~--~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      .++...+++.  .++.++..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            4455555544  45556667777777777777777777766 66777777777777777777766666667777777777


Q ss_pred             CcCCcCCcccccCCCCCeEEcCCCcCCCCcc--ccccCCCCcEEEccCCcccc
Q 007984          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV  174 (582)
Q Consensus       124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~--~l~~~~~L~~L~l~~~~i~~  174 (582)
                      |.+..+| .+.++++|+.|++++|.+..++.  .+..+++|++|++++|.+..
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            7776665 46666677777777776665543  46666667777776666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=1.7e-14  Score=127.96  Aligned_cols=116  Identities=23%  Similarity=0.285  Sum_probs=80.5

Q ss_pred             CcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccC
Q 007984           80 LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC  159 (582)
Q Consensus        80 ~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~  159 (582)
                      ++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.+..++ .+..+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence            4455557777888888888877777776 677777788888877777777766666677777777777777664 56666


Q ss_pred             CCCcEEEccCCcccccch-hhhcccccCcEEEccCCccC
Q 007984          160 SKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN  197 (582)
Q Consensus       160 ~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~  197 (582)
                      ++|++|++++|+++.++. ..+..+++|++|++++|.+.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            777777777776665543 34566666666666666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.31  E-value=1.2e-11  Score=106.41  Aligned_cols=106  Identities=24%  Similarity=0.375  Sum_probs=88.2

Q ss_pred             ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCC
Q 007984          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (582)
                      +..+.++++++.++.+|..+  .+++++|++++|.++.++ ..+..+++|++|++++|+++.++...|..+++|++|+++
T Consensus         9 C~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35578888888888888766  378888999998888874 467888889999999888888888778888899999998


Q ss_pred             CCCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984          436 NNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (582)
Q Consensus       436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~  464 (582)
                      +|+++.++...|..+++|++|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            88888888877888888999999888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=2.7e-11  Score=104.39  Aligned_cols=105  Identities=24%  Similarity=0.396  Sum_probs=85.6

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ..+.+++.++.++.+|..+.  ++|++|++++|.++.++ ..+..+++|++|++++|+++.++...|..+++|++|++++
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34678888888888887664  78888888888888864 4678888888888888888888877778888888888888


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~  464 (582)
                      |++..++...|..+++|++|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            8888888777888888888888888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=5e-11  Score=102.39  Aligned_cols=106  Identities=27%  Similarity=0.369  Sum_probs=89.4

Q ss_pred             CccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (582)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  460 (582)
                      ..+.++++++.++.+|..+.  ++|++|++++|.++.+....|..+++|++|++++|+++.++...|..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35789999999999987653  8899999999999999888899999999999999999999988889999999999999


Q ss_pred             CcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCC
Q 007984          461 NIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (582)
Q Consensus       461 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~  510 (582)
                      |.++.+.+..|..+                      ++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNL----------------------KSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTC----------------------TTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCC----------------------CCCCEEEeCCCCCC
Confidence            99887766555544                      56666777776655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=4.1e-11  Score=103.26  Aligned_cols=107  Identities=22%  Similarity=0.318  Sum_probs=89.5

Q ss_pred             ccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (582)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  461 (582)
                      -+.++++++.++.+|..+.  ++|++|++++|.++++++..|..+++|++|++++|+++.++...|..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3789999999999998664  88999999999999998888999999999999999999998888899999999999999


Q ss_pred             cCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc
Q 007984          462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI  512 (582)
Q Consensus       462 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  512 (582)
                      .++.+....|..                      +++|+.|++++|.+...
T Consensus        92 ~l~~l~~~~~~~----------------------l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDN----------------------LKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTT----------------------CTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhcc----------------------ccCCCEEEeCCCCcccc
Confidence            988766544544                      45666677777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=5e-12  Score=123.17  Aligned_cols=155  Identities=17%  Similarity=0.150  Sum_probs=102.7

Q ss_pred             ccCccEEEcCCCCccch-----hHhhc-CCCCCcEEEcCCCCCcc--cchhhhCCCCCcEEecCCCcCccC-----Chhh
Q 007984           44 AVDLQKLILAHNNIEKL-----KEDLR-NLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIMKI-----PDEI  110 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~-----~~~~~-~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~l-----~~~~  110 (582)
                      .+.+++|++++|.++..     ...+. ..++|++|+|++|.++.  +......+++|++|+|++|.++..     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35688888888877632     22333 23678888888887763  222223455788888888877632     2222


Q ss_pred             -hccCCccEEEccCCcCCc-----CCcccccCCCCCeEEcCCCcCCC-----CccccccCCCCcEEEccCCcccccchhh
Q 007984          111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL  179 (582)
Q Consensus       111 -~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~  179 (582)
                       ...++|++|++++|.+..     ++..+..+++|++|++++|.+.+     ++..+...++|++|++++|.+++.+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             245778888888887753     33445677788888888887763     3455677788888888888887554333


Q ss_pred             ----hcccccCcEEEccCCccCc
Q 007984          180 ----IASWTMLTELIASKNLLNG  198 (582)
Q Consensus       180 ----~~~~~~L~~L~l~~~~~~~  198 (582)
                          +...+.|++|++++|.+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence                3456788888888888754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=4.6e-13  Score=130.49  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             cCCccEEEcCCCcCCcC-----Ccccc-CCCCCCEEEcccCcCCCCChHHh-hCCCCCCEeeCCCCCCccCCCccc----
Q 007984          379 AGEITKLDLSRNSIQEL-----PPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF----  447 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l-----~~~l~-~~~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~----  447 (582)
                      .+.|++|++++|.++..     ...+. .+++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            57899999999998762     22233 34789999999999876444333 346789999999999876544333    


Q ss_pred             -cCCCCCcEEeCCCCcCCCCCCCC----CCCCccchhhhh-cccccc-----CchhhhccCCCCEEecCCCcCCc-----
Q 007984          448 -KDIPMLQILDLSYNIASLPENPP----FSSLPHLQELYL-RMQLRE-----APTDILRLQQLRILDLSQNSLQS-----  511 (582)
Q Consensus       448 -~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l-~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-----  511 (582)
                       ...++|++|++++|.+++.....    +..+++|++|++ .+.+..     +...+..+++|++|++++|.++.     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             35788999999999876432211    234455555555 332221     12234444555555555555542     


Q ss_pred             cchhhcCCCCCCEEeCCCCcCC
Q 007984          512 IPEGFKNLTSLTELDLSDNNIS  533 (582)
Q Consensus       512 l~~~~~~l~~L~~L~l~~n~l~  533 (582)
                      ++..+..+++|++|+|++|.|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            2233444555555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=3.2e-09  Score=103.08  Aligned_cols=105  Identities=22%  Similarity=0.214  Sum_probs=93.1

Q ss_pred             ccEEEecCC-CCccCChhhhccCCccEEEcCC-CcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCC
Q 007984          359 SKELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (582)
Q Consensus       359 l~~l~l~~~-~~~~i~~~~~~~~~L~~L~l~~-~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (582)
                      -..+++.+. .++.+|. +..+++|++|+|++ |.++.++. .|..+++|++|+|++|.++.+++..|..+++|++|+|+
T Consensus        10 ~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            356788888 8999999 88889999999996 99999875 68999999999999999999988889999999999999


Q ss_pred             CCCCccCCCccccCCCCCcEEeCCCCcCCC
Q 007984          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (582)
Q Consensus       436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~  465 (582)
                      +|+++.++...|..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999999888777766 9999999997754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=3.2e-09  Score=103.07  Aligned_cols=98  Identities=28%  Similarity=0.358  Sum_probs=88.4

Q ss_pred             cEEEcCCC-cCCcCCccccCCCCCCEEEccc-CcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984          383 TKLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (582)
Q Consensus       383 ~~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  460 (582)
                      ..++.+++ .++.+|. +..+++|++|+|++ |.++.++...|..+++|+.|+|++|.++.+.+..|..+++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35688887 8999999 99999999999996 999999988899999999999999999999998899999999999999


Q ss_pred             CcCCCCCCCCCCCCccchhhhh
Q 007984          461 NIASLPENPPFSSLPHLQELYL  482 (582)
Q Consensus       461 n~l~~~~~~~~~~~~~L~~L~l  482 (582)
                      |.++.+.+..|..++ |+.|++
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CccceeCHHHcccCC-ceEEEe
Confidence            999988777777666 777777

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=1.9e-08  Score=96.89  Aligned_cols=152  Identities=17%  Similarity=0.169  Sum_probs=79.6

Q ss_pred             hhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC-Ccccc--ccCCCCcEEEccCC--c------ccccch
Q 007984          109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDL--ADCSKMSKLDVEGN--K------LTVLSN  177 (582)
Q Consensus       109 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-i~~~l--~~~~~L~~L~l~~~--~------i~~~~~  177 (582)
                      .+..+|+|+.|+++++.-..++. + ..++|++|++..|.+.. ....+  ..+++|++|++..+  .      +..+..
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            34455666666666553122322 2 25666666666655441 11122  24666666666321  1      111111


Q ss_pred             hh-hcccccCcEEEccCCccCc-cchhh---cCCCCccEEeCCCCcCcc-----CCcCCcCCCCCcEEEcCCCcCcc-cc
Q 007984          178 NL-IASWTMLTELIASKNLLNG-MPETI---GSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSA-LP  246 (582)
Q Consensus       178 ~~-~~~~~~L~~L~l~~~~~~~-~~~~l---~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~~-l~  246 (582)
                      .. ...+++|++|.+.+|.+.. ....+   ..+++|++|+++.|.+..     ++..+..+++|+.|++++|.++. ..
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            10 1235677777777766532 11111   246788888888887763     33444567888888888888772 22


Q ss_pred             hhhhc-cCCCcEEEcccCc
Q 007984          247 AELGK-LSKLGTLDLHSNQ  264 (582)
Q Consensus       247 ~~l~~-~~~L~~L~l~~~~  264 (582)
                      ..+.. +  ...++++.++
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            22332 2  3456666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=1e-08  Score=89.04  Aligned_cols=113  Identities=13%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             hHhhcCCCCCcEEEcCCC-CCc-----ccchhhhCCCCCcEEecCCCcCcc-----CChhhhccCCccEEEccCCcCCc-
Q 007984           61 KEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKE-  128 (582)
Q Consensus        61 ~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-  128 (582)
                      ...+...+.|++|+|++| .+.     .+...+...++|++|+|++|.+..     +...+...++|++|++++|.+.. 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345566666666776666 655     233355556666677766666652     33344455666666666666652 


Q ss_pred             ----CCcccccCCCCCeEEc--CCCcCCC-----CccccccCCCCcEEEccCCccc
Q 007984          129 ----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLT  173 (582)
Q Consensus       129 ----l~~~~~~~~~L~~L~l--~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~  173 (582)
                          +...+...++|++|++  ++|.+..     +.+.+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                3344555666666666  5566552     3445556666777777666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=2.3e-08  Score=86.83  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=87.3

Q ss_pred             ccCccEEEcCCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCcc-----cchhhhCCCCCcEEecCCCcCcc-----CC
Q 007984           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP  107 (582)
Q Consensus        44 ~~~l~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----l~  107 (582)
                      ++.|++|++++| .+.     .+.+.+...++|++|+|++|.+..     +...+...++|++|+|++|.+..     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            788999999998 876     345678888999999999999873     44567778899999999999883     45


Q ss_pred             hhhhccCCccEEEc--cCCcCCc-----CCcccccCCCCCeEEcCCCcCC
Q 007984          108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (582)
Q Consensus       108 ~~~~~~~~L~~L~l--~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~  150 (582)
                      ..+...++|++|++  ++|.+..     +...+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66778889999999  8888872     4456677899999999999765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=3.2e-08  Score=95.35  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=76.0

Q ss_pred             CCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhc--ccccCcEEEccCC--c------cCc
Q 007984          129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA--SWTMLTELIASKN--L------LNG  198 (582)
Q Consensus       129 l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~--~------~~~  198 (582)
                      +...+..+|+|+.|.++++.-..++. + ..++|++|++..+.+..-....+.  .+++|++|++..+  .      +..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            44455677889999998773223333 3 378888888887776643333333  6778888877421  1      111


Q ss_pred             cchhh--cCCCCccEEeCCCCcCcc-CCcCC---cCCCCCcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCcccc
Q 007984          199 MPETI--GSLSRLIRLDLHQNRILS-IPSSI---SGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       199 ~~~~l--~~~~~L~~L~l~~~~~~~-~~~~l---~~~~~L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~~  267 (582)
                      +...+  ..+++|+.|++.+|.+.. .+..+   ..+++|++|+++.|.+..     ++..+..+++|+.|++++|.++.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            11122  235667777776666541 11111   235566666666666553     22233445666666666665553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=2.3e-07  Score=78.09  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             cCChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccC-cCCCCChHHhhCC----CCCCEeeCCCCC-CccCC
Q 007984          371 AIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVP  443 (582)
Q Consensus       371 ~i~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l----~~L~~L~l~~~~-l~~~~  443 (582)
                      .+|........|++|++++|.+++. -..+..|++|++|++++| .+++.....+..+    ++|++|++++|. +++..
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            3444333345789999999987762 234678899999999998 5888776667764    579999999985 77655


Q ss_pred             CccccCCCCCcEEeCCCCc
Q 007984          444 SDGFKDIPMLQILDLSYNI  462 (582)
Q Consensus       444 ~~~~~~~~~L~~L~l~~n~  462 (582)
                      -..+..+++|++|++++|.
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            4557788999999998873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=1.6e-07  Score=79.06  Aligned_cols=95  Identities=11%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC-CccCCCccccC----CCCCcEEeCCCCc-CCCCCC
Q 007984          395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKD----IPMLQILDLSYNI-ASLPEN  468 (582)
Q Consensus       395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~----~~~L~~L~l~~n~-l~~~~~  468 (582)
                      +|.....-..|++||+++|.+++.....+.+|++|++|++++|. +++..-..+..    +++|++|++++|. +++.+ 
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence            45433334579999999999999887888999999999999995 66644334444    3579999999884 44322 


Q ss_pred             CCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc-CCc
Q 007984          469 PPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS-LQS  511 (582)
Q Consensus       469 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~  511 (582)
                                           ...+.++++|+.|++++|. ++.
T Consensus       132 ---------------------l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 ---------------------IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             ---------------------HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             ---------------------HHHHhcCCCCCEEECCCCCCCCc
Confidence                                 2235567888889998883 553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=3.6e-06  Score=76.63  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             CCCCCcEEecCCCcCccC---ChhhhccCCccEEEccCCcCCcCCcccccCC--CCCeEEcCCCcCCC-Cc-------cc
Q 007984           89 ELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITS-LP-------ED  155 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~l~~~~~~~-i~-------~~  155 (582)
                      .+++|++|+|++|.+..+   +..+..+++|+.|++++|.+..+ ..+..+.  +|++|++.+|.+.. ++       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            455555555555555533   23344555555555555555544 1222222  56666666665542 22       12


Q ss_pred             cccCCCCcEEE
Q 007984          156 LADCSKMSKLD  166 (582)
Q Consensus       156 l~~~~~L~~L~  166 (582)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            55666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.83  E-value=1.8e-05  Score=72.07  Aligned_cols=94  Identities=22%  Similarity=0.212  Sum_probs=68.3

Q ss_pred             EEcCCCCccchhH----hhcCCCCCcEEEcCCCCCcccc---hhhhCCCCCcEEecCCCcCccCChhhhccC--CccEEE
Q 007984           50 LILAHNNIEKLKE----DLRNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFD  120 (582)
Q Consensus        50 L~l~~~~i~~~~~----~~~~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~  120 (582)
                      ++++.+....++.    ....+++|++|+|++|.+..++   ..+..+++|++|+|++|.+..+ ..+..+.  +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence            5666665554432    2256889999999999888653   5667899999999999998876 3344444  899999


Q ss_pred             ccCCcCC-cCC-------cccccCCCCCeEEc
Q 007984          121 CSSNQLK-ELP-------SSLGRCLNLSDFKA  144 (582)
Q Consensus       121 l~~~~~~-~l~-------~~~~~~~~L~~L~l  144 (582)
                      +++|.+. .+|       ..+..+++|+.||-
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            9999886 333       23668899998874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.80  E-value=2.4e-05  Score=67.15  Aligned_cols=108  Identities=16%  Similarity=0.183  Sum_probs=57.7

Q ss_pred             hhcCCCCCcEEEcCCC-CCc-----ccchhhhCCCCCcEEecCCCcCc-----cCChhhhccCCccEEEccCCcCC----
Q 007984           63 DLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK----  127 (582)
Q Consensus        63 ~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~----  127 (582)
                      .+..-+.|++|+|+++ .+.     .+..++.....|+.|+|++|.+.     .+...+...+.|++|++++|.+.    
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455566666666654 554     23345555666666666666665     23344445556666666666655    


Q ss_pred             -cCCcccccCCCCCeEEcCCC---cCC-----CCccccccCCCCcEEEccCC
Q 007984          128 -ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGN  170 (582)
Q Consensus       128 -~l~~~~~~~~~L~~L~l~~~---~~~-----~i~~~l~~~~~L~~L~l~~~  170 (582)
                       .+...+..-+.|++|+++++   .+.     .+.+.+...++|++|++..+
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence             22233444455666666543   222     23344555566666666544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.75  E-value=3.1e-05  Score=66.41  Aligned_cols=107  Identities=16%  Similarity=0.209  Sum_probs=80.9

Q ss_pred             ccCccEEEcCCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCc-----cCC
Q 007984           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (582)
Q Consensus        44 ~~~l~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~  107 (582)
                      -+.|++|+|+++ .|.     .+.+++.....|+.|+|++|.+.     .+..++.....|++|+|+.|.|.     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            568999999885 666     34567888889999999999888     34557778889999999999988     344


Q ss_pred             hhhhccCCccEEEccCCc---CC-----cCCcccccCCCCCeEEcCCCcCC
Q 007984          108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCIT  150 (582)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~---~~-----~l~~~~~~~~~L~~L~l~~~~~~  150 (582)
                      ..+...+.|++|+++++.   +.     .+...+..-++|+.|+++.+.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            556667789999998653   33     23445677789999998876543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=0.00016  Score=57.94  Aligned_cols=71  Identities=34%  Similarity=0.522  Sum_probs=56.7

Q ss_pred             CEEecCCCcCC--ccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHh
Q 007984          500 RILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD  577 (582)
Q Consensus       500 ~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (582)
                      ..++.+++.++  .+|..+  -++|++|+|++|+|+.++...+...++|+.|+|.+|++.-      +.....+..|+++
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C------dC~l~~l~~wl~~   82 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC------DCRLVPLRAWLAG   82 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC------SGGGHHHHHHHHT
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec------cCccHHHHHHHHh
Confidence            47889999998  898653  2379999999999999999998888999999999999863      4445555555554


Q ss_pred             c
Q 007984          578 K  578 (582)
Q Consensus       578 ~  578 (582)
                      .
T Consensus        83 ~   83 (130)
T 3rfe_A           83 R   83 (130)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.62  E-value=0.0039  Score=49.79  Aligned_cols=54  Identities=26%  Similarity=0.501  Sum_probs=29.9

Q ss_pred             EEEcCCCcCC--cCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCC
Q 007984          384 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (582)
Q Consensus       384 ~L~l~~~~l~--~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  439 (582)
                      .++.++..++  .+|..+.  ++|++|+|++|.++.++...|..+++|+.|+|.+|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555555  5554322  3456666666666666555556666666666666553

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.27  E-value=0.12  Score=38.72  Aligned_cols=45  Identities=9%  Similarity=0.113  Sum_probs=20.6

Q ss_pred             CCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984          415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (582)
Q Consensus       415 l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  460 (582)
                      ++.+...+|.+|.+|+.+.|.. .++.|...+|.+|.+|+.+.+.+
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence            3444444444445555444432 24444444444444444444443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.42  E-value=0.21  Score=37.30  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             CCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (582)
Q Consensus       436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  482 (582)
                      +..++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~   50 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL   50 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence            34566777777778888888877764 67777777888888887777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	582
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-15
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 1e-18
 Identities = 74/353 (20%), Positives = 132/353 (37%), Gaps = 23/353 (6%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           +T L A +  +  + + +  L+ L +++   N++  I   +     L +  M NN ++ +
Sbjct: 46  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 103

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                  +  G    ++       ++       +   SN     +              L
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQL 159

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS------ 359
           +     T    L N  T   L    +++ +       T  E LI    ++S  +      
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 360 --KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
              ELSL G  L  I + +     +T LDL+ N I  L P LS    L  L L  N+I +
Sbjct: 220 NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN 277

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
                L  L++L+ L+L+ N           ++  L  L L +N  ++ +  P SSL  L
Sbjct: 278 ISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFN--NISDISPVSSLTKL 331

Query: 478 QELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530
           Q L+         + +  L  +  L    N +  +     NLT +T+L L+D 
Sbjct: 332 QRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 66/359 (18%), Positives = 126/359 (35%), Gaps = 16/359 (4%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  ++  L +  +    S  +    +         + ++   +  L+ L  ++  +NQ
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           L +        +L  + ++NN ++ + P           L             +      
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRL----SVTSKELSLEGMNLSAIPSEIWEAG 380
            L               S  +       T L    ++T+ E      N  +  S + +  
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L  + N I ++ P      +L  L L+ N++KD     L SL++L+ L L NN + 
Sbjct: 198 NLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 254

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500
            +       +  L  L L  N   +    P + L  L  L L     E  + I  L+ L 
Sbjct: 255 NLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 501 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
            L L  N++  I     +LT L  L  ++N +S     L  L  ++  L    N +  +
Sbjct: 311 YLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD-VSSLANL-TNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 3e-17
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 59/418 (14%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 23  EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 80

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I   + + T LV    ++NQ                   +N    +L  +        K 
Sbjct: 81  IT-PLKNLTKLVDILMNNNQ---------IADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
               N+L + SN +     +       +         +  L+ L  L+        +   
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 226 I--SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
              +   +L      NN +S +       + L  L L+ NQLK+    A    L+ LDL+
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLDLA 249

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           NN +S L P +  +T L +L L  N +  +                              
Sbjct: 250 NNQISNLAP-LSGLTKLTELKLGANQISNISPL--------------------------- 281

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
                        +T+        N     S I     +T L L  N+I ++ P +SS  
Sbjct: 282 -----------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLT 329

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
            LQ L  + NK+ D     L +L++++ L   +N +  +      ++  +  L L+  
Sbjct: 330 KLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 41  WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSF 100
                +L  L L  NNI  +   + +L  L  L  ++NK+S++  ++  L  +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360

Query: 101 NSIMKIPDEIGSATALVKFDCSSN 124
           N I  +   + + T + +   +  
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 463 ASLPENPPFSSL---PHLQELYLRMQLREAPTDILR---LQQLRILDLSQNSLQSIPEGF 516
           A++ ++ P + +     L E    +  +   TD +    L Q+  L   +  ++SI +G 
Sbjct: 4   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGV 62

Query: 517 KNLTSLTELDLSDNNISALPPELGL 541
           + L +LT+++ S+N ++ + P   L
Sbjct: 63  EYLNNLTQINFSNNQLTDITPLKNL 87

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 7e-17
 Identities = 54/300 (18%), Positives = 104/300 (34%), Gaps = 29/300 (9%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           L  
Sbjct: 4   CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK--NLHT 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L     +                  +L    + L L    L  +P ++ +   + +L + 
Sbjct: 60  LILINNKISKISPGA-----FAPLVKL----ERLYLSKNQLKELPEKMPK--TLQELRVH 108

Query: 389 RNSIQELPPELSSCASLQTLILSRN---KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            N I ++   + +  +   ++       K     +     +  LS +++ +  +  +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTD--ILRLQQLRILD 503
                P L  L L  N  +  +      L +L +L L      A  +  +     LR L 
Sbjct: 169 LP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 504 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALP------PELGLLEPSLQALRLDGNPLR 557
           L+ N L  +P G  +   +  + L +NNISA+       P     + S   + L  NP++
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 7e-16
 Identities = 58/307 (18%), Positives = 114/307 (37%), Gaps = 36/307 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +  S+  L  VP ++  +                  L L +N I ++K+ D +NL  L 
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++ P A   L  L+ L +S N + ++P+++       +     N++ ++ 
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVR 116

Query: 131 SSLGRCLN----LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            S+   LN    +                     K+S + +    +T +   L  S   L
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---L 173

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGNNALSA 244
           TEL    N +  +   ++  L+ L +L L  N I ++ +        L E ++ NN L  
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSGLPPEIGK 296
           +P  L     +  + LH+N +                    S + L +N +     +   
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

Query: 297 MTTLRKL 303
              +   
Sbjct: 294 FRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 2e-15
 Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 53/339 (15%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLS 283
             C C L      +  L  +P +L        LDL +N++ E      +    L  L L 
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 284 NNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           NN +S + P     +  L +L L+ N L+ L   +                   E     
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--------------ELRVHE 109

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                +             + L    L +   E                           
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--------------------NGAFQGM 149

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
             L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+N 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 463 ASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEG------ 515
            S  +N   ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 516 -FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRL 551
                 S + + L  N +     +           A++L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 483 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGL 541
            + L + P D+       +LDL  N +  I +G FKNL +L  L L +N IS + P    
Sbjct: 19  DLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 542 LEPSLQALRLDGNPLRSIRRTI 563
               L+ L L  N L+ +   +
Sbjct: 77  PLVKLERLYLSKNQLKELPEKM 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 4e-15
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 8/201 (3%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++ +  + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478
                 +L  L  L L +N L+ +P  G     +  +      + SLP           +
Sbjct: 71  QVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQ--NSLQSIPEGFKNLTSLTELDLSDNNISALP 536
                 +L+  P  +L              N  +        L +L  L L +N++  +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 537 PELGLLEPSLQALRLDGNPLR 557
                    L    L GNP  
Sbjct: 189 KGFFGS-HLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 5/206 (2%)

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C    L  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227
           +  +LT L  +         +L  ++     +         ++ +  ++   L + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNN 285
                  +  GN   +  P  L    KL  L L +N L E           L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLR 311
           SL  +P        L    L GNP  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 4/199 (2%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIM 104
              ++     N+  L  DL      T+L++S N L     A +     L  L++    + 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           K+  +             +                    + N   +     L    ++ +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           L ++GN+L  L   L+     L +L  + N L  +    +  L  L  L L +N + +IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 224 SSISGCCSLAEFYMGNNAL 242
               G   L   ++  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            +N   R+L  +P ++ K+                  L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDLPKD---------------TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +        G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L      +   N   T  P  L    K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 492 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 551
           ++ ++     ++  + +L ++P         T L LS+N +        +    L  L L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 552 DGNP 555
           D   
Sbjct: 63  DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 575
              + S  E++    N++ALPP+L         L L  N L +     L   T+  L  L
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTR--LTQL 60

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 55/265 (20%), Positives = 87/265 (32%), Gaps = 15/265 (5%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                   L  +P  I      +++ L GN +  + ++          + L      +  
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSNV 67

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                               S    L  ++    P+     G +  L L R  +QEL P 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 399 LSSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
           L    A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  L  L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRM--QLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
           L  N  +      F  L  L  LYL            +  L+ L+ L L+ N        
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 516 FKNLTSLTELDLSDNNIS-ALPPEL 539
                 L +   S + +  +LP  L
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED----L 64
               + +   + L+ VP  +                   Q++ L  N I  +        
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAA---------------SQRIFLHGNRISHVPAASFRAC 55

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           RNL +L + +    ++         L     L  +       P        L        
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
            L+EL          L      +N + +LP+D   D   ++ L + GN+++ +       
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 240
              L  L+  +N +    P     L RL+ L L  N + ++   +++   +L    + +N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG 289
                       + L      S+++   C    +L    +  L+ N L G
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 61/229 (26%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
                S     L A+P  I       ++ L  N I  +P     +C +L  L L  N + 
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 417 DWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
               A  T L+ L  L L +N  LR V    F  +  L  L L            F  L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 476 HLQELYLRM-QLREAPTDILRLQ-QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 532
            LQ LYL+   L+  P D  R    L  L L  N + S+PE  F+ L SL  L L  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 533 SALPPEL------------------------GLLEPSLQALRLDGNPLR 557
           + + P                               +LQ LRL+ NP  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL 129
              +     L  +P  I      + + +  N I  +P     +   L      SN L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 130 PSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            ++    L L +    ++        P       ++  L ++   L  L   L      L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244
             L    N L  +  +T   L  L  L LH NRI S+P  +  G  SL    +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 245 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + P     L +L TL L +N L     EA      L  L L++N              L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 302 KLLLTGNPLR 311
           K   + + + 
Sbjct: 252 KFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 9e-09
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 6/181 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQ 441
                 +  +Q +P  + +  + Q + L  N+I   P A   +  +L+      N   R 
Sbjct: 14  VTTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL--RMQLREAPTDILRLQQL 499
             +       + Q+           +   F  L  L  L+L         P     L  L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558
           + L L  N+LQ++P+  F++L +LT L L  N IS++P        SL  L L  N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 559 I 559
           +
Sbjct: 192 V 192

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 62/368 (16%), Positives = 104/368 (28%), Gaps = 56/368 (15%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
             EL  +   L+ +PE    L  L       N +  +P       SL    + NN L AL
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELP---QSLKSLLVDNNNLKAL 93

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                 L  L      SN   E   E        +   +N+     P++           
Sbjct: 94  S----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
                     +L              +LP+   S  S    + I            L+  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
             + + + +       +  L++  N + +LP    S   L       + + + P      
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP------ 263

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM 484
                      N             P L+ L++S N +  LP  PP              
Sbjct: 264 -----PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP-------------- 304

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEP 544
                        +L  L  S N L  +PE      +L +L +  N +   P        
Sbjct: 305 -------------RLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPE---- 344

Query: 545 SLQALRLD 552
           S++ LR++
Sbjct: 345 SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             P L  LNVS+NKL ELPA    L   + L  SFN + ++P+   +   L +     N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 126 LKELPSSLGRCLNL 139
           L+E P       +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 496 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
              L  L++S N L  +P     L     L  S N+++ +P        +L+ L ++ NP
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAEVPELPQ----NLKQLHVEYNP 335

Query: 556 LRSI 559
           LR  
Sbjct: 336 LREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL++    L  +P+       + +L  S N + E+P       +L+ L +  N ++++P
Sbjct: 287 EELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP 340

Query: 420 DAILTSLSSLSCLKLDN 436
           D       S+  L++++
Sbjct: 341 D----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88
           Y N               L++L +++N + +L      L     L  S N L+E+P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---E 321

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATAL 116
               LK L V +N + + PD   S   L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 498 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557
           Q   L+L+   L S+PE       L  L  S N+++ LP        SL++L +D N L+
Sbjct: 39  QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQ----SLKSLLVDNNNLK 91

Query: 558 SI 559
           ++
Sbjct: 92  AL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 52/338 (15%), Positives = 92/338 (27%), Gaps = 51/338 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L L+N  L  +P                     L+ L+ + N++ +L E  ++   L  L
Sbjct: 43  LELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQS---LKSL 83

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
            V +N L  L      L  L   +     + ++ +        V  +         PS  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSK---------------------LDVEGNKL 172
                 +  +                   S                         E   L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             L+     +  + T      +L                        +S           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
              Y  N + + + +       L  L++ +N+L E  + A   RL  L  S N L+ +P 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 321

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                  L++L +  NPLR           P  ++ LR
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDI------PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 53/360 (14%), Positives = 97/360 (26%), Gaps = 49/360 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             +L L +  +  L E   +L     L  S N L+ELP        LKSL V  N++  +
Sbjct: 40  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
            D +      +    +  +      +      +     S   +  LP  L   +  +   
Sbjct: 94  SD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            E  +L  L           +        L+      G+       +L     L+   + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +           +     +              L    + E            L   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            + +        +L +L ++ N L  L         PAL   L                 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL---------PALPPRL----------------- 306

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L     +L+ +P        + +L +  N ++E P    S   L+
Sbjct: 307 -------------ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 57  IEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATAL 116
           + +L++ L        L +++  LS LP     L   +SL  S NS+ ++P+   S  +L
Sbjct: 29  VSRLRDCLDRQ--AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSL 83

Query: 117 VKFDCSSNQLKELPSSLGRC 136
           +  + +   L +LP  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+SN  L ++P    +                L++LI + N++ ++ E  +N   L  
Sbjct: 288 ELNVSNNKLIELPALPPR----------------LERLIASFNHLAEVPELPQN---LKQ 328

Query: 73  LNVSHNKLSELPAAIGELHMLK 94
           L+V +N L E P     +  L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197
           +L +   SNN +  LP       ++ +L    N L  +          L +L    N L 
Sbjct: 285 SLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELP----QNLKQLHVEYNPLR 337

Query: 198 GMPETIGSLSRLIRLD 213
             P+   S+  L R++
Sbjct: 338 EFPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI 563
                SL EL++S+N +  LP       P L+ L    N L  +    
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELP 323

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 520 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
               EL+L++  +S+LP       P L++L    N L  +
Sbjct: 38  RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTEL 73

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 44/286 (15%), Positives = 83/286 (29%), Gaps = 38/286 (13%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G                 L       
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL---- 106

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        ++   ++ +           +T         
Sbjct: 107 ----------------------------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 393 QELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451
             LPP +SS  +L  +    N+I    PD+  +     + + +  N L       F ++ 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ- 510
           +  +      +         S     +    +  L      +   + L  LDL  N +  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 511 SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 556
           ++P+G   L  L  L++S NN+    P+ G L           N  
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-QRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 70  LTVLNVSHNKLS---ELPAAIGELHMLKS--LDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           +  L++S   L     +P+++  L  L    +    N +  IP  I   T L     +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 125 QLKELPSSLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +          +    +   + N    +LP  ++    +  +  +GN+++    +   S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 183 WTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ++ L     I+   L   +P T  +L+                       +  + ++  N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPPEIGKMT 298
           +L+    ++G    L  LDL +N++     +   QL  L  L++S N+L G  P+ G + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 299 TLRKLLLTGNPL 310
                    N  
Sbjct: 292 RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 52  LAHNNIE-KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
           L +N I   L + L  L  L  LNVS N L       G L        + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 23/258 (8%)

Query: 204 GSLSRLIRLDLHQNRI---LSIPSSISGCCSLAEFYMGN--NALSALPAELGKLSKLGTL 258
               R+  LDL    +     IPSS++    L   Y+G   N +  +P  + KL++L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 259 DLHSNQLKEYCVEACQLRLS---VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL-- 313
            +    +     +      +   +    N     LPP I  +  L  +   GN +     
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
            S          +   R+RL        +      + ++  +      +       +   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 374 SEIWEAGEI-----------TKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDA 421
                +                LDL  N I   LP  L+    L +L +S N +      
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 422 ILTSLSSLSCLKLDNNPL 439
              +L         NN  
Sbjct: 287 -GGNLQRFDVSAYANNKC 303

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT 491
           L L +  L  +     + + ++  LDLS+N       P  ++L  L+ L       E   
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD 59

Query: 492 DILRLQQLRILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 549
            +  L +L+ L L  N LQ     +   +   L  L+L  N++         L   L ++
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 550 R 550
            
Sbjct: 120 S 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP 107
           + L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N++  + 
Sbjct: 1   RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 108 DEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
                          +N+L++      L  C  L       N +     
Sbjct: 60  GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L L+   +  L   L     +  L LS N+++  P A+  +L  L  L+  +N L  V  
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG 60

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQL 499
               ++P LQ L L  N +       P  S P L  L L+   L +      RL ++
Sbjct: 61  --VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
           L L     L++   +     +    + +N L ALP  L  L  L  L    N L+     
Sbjct: 3   LHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 272 ACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
           A   RL  L L NN L        +     L  L L GN L              + + L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGIQERL 112

Query: 330 RSRLP 334
              LP
Sbjct: 113 AEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSI 512
           ++L L++    L        L  +  L L   +LR  P  +  L+ L +L  S N+L+++
Sbjct: 1   RVLHLAHK--DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 513 PEGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSI 559
             G  NL  L EL L +N +        L+  P L  L L GN L   
Sbjct: 59  D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           + L L   +L+ +   + +   +T LDLS N ++ LPP L++   L+ L  S N +++  
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--FSSLP 475
                    L  L L NN L+Q  +       P L +L+L  N +             LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 476 HLQEL 480
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
             +   L  L   L + L ++    S+N + +LP  LA    +  L    N L  +    
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 180 IASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
                 L EL+   N L      + + S  RL+ L+L  N +            +
Sbjct: 63  N--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
           R L+L+     +  +T L   L     ++ LD+  N+L  L   L A   +     +   
Sbjct: 1   RVLHLA-----HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
                 + + +L RL  L L  NR+   +    +  C  L    +  N+L        +L
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 253 SKL 255
           +++
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 40/157 (25%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           VL L++  L+ L   + ++  +  L L+ N LR L  +L       +L+           
Sbjct: 2   VLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA---------- 50

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP- 397
                                        N       +     + +L L  N +Q+    
Sbjct: 51  ---------------------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAI 83

Query: 398 -ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
             L SC  L  L L  N +             L  + 
Sbjct: 84  QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           IT L      +  +   +    +L  L L  N+I D       +  +   L  +      
Sbjct: 43  ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 442 VP----------------SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ 485
                             +D      +  +  L  ++  +    P + L +LQ L +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPS 545
                T +  L +L  L    N +  I     +L +L E+ L +N IS + P       +
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANT--SN 218

Query: 546 LQALRL 551
           L  + L
Sbjct: 219 LFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      +  + E ++ L  L  L +  N++++L        + +            
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +   +    +        + L     L         I+ L          +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQY 155

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +      V     +A+ + LT L A  N ++ +   + SL  LI + L  N+I  +   +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 227 SGCCSLAEFYMGN 239
           +   +L    + N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L     +    + +++      +L  + +L      +  I   +     L+  +   NQ
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           + +L        NL+           L    A     S   ++     +     +A  + 
Sbjct: 75  ITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L  L    N +  +    G  +       +     S  + ++    L      +N +S +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDI 188

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L  L                        + L NN +S + P +   + L  + L
Sbjct: 189 S-PLASLPNL----------------------IEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 306 T 306
           T
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 22/196 (11%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
              K+   ++++ +     +    + TL      +       +  L++L  L+L +N + 
Sbjct: 20  NAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPF------------SSLPHLQELYLRMQLRE 488
            +             L  +                        + +  L  L     L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 489 APTDILRLQQLRI-----LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE 543
               I  +  L            N+  S      NL+ LT L   DN IS + P   L  
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL-- 194

Query: 544 PSLQALRLDGNPLRSI 559
           P+L  + L  N +  +
Sbjct: 195 PNLIEVHLKNNQISDV 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 468 NPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDL 527
             P ++L  L  L          + +  L  L  + L  N +  +     N ++L  + L
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 528 SD 529
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L+    +    + + +   +A    ++ L      ++ +   +  +  L  L L  N + 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 312 TLRS-----SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            L        +             S +   +  +        IT  T L+  S    L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
                            +     N+       L++ + L TL    NKI D     L SL
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ 485
            +L  + L NN +  V                           P ++  +L  + L  Q
Sbjct: 195 PNLIEVHLKNNQISDVS--------------------------PLANTSNLFIVTLTNQ 227

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPEDLADCSKM--SKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D    N       + L                   +
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND----NELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA 233
             N    +  +    +    +     +    L +L  L+L+ N+I  + P S     SL 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPP 292
              + +N  +           L    L+    +  C    ++R + + DL ++       
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR--CGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 293 EI 294
             
Sbjct: 188 NS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +D +   L  +P +I       +LLL  N L  + S  + G  P L+K 
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
              R         +      I          KE+                  ++  L+L 
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI---------SNKMFLGLHQLKTLNLY 110

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N I  + P       SL +L    +   +    +      L    L+    R       
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR---CGAP 166

Query: 448 KDIPMLQILDLSYN 461
             +  +QI DL ++
Sbjct: 167 SKVRDVQIKDLPHS 180

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 24/189 (12%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +   + +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 25  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENP------------------PFSSLPHLQELYL 482
            +             LD +                                LP L+ LYL
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 483 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLL 542
                   T + RL +L  L L  N +  I      LT L  L LS N+IS L    GL 
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGL- 199

Query: 543 EPSLQALRL 551
             +L  L L
Sbjct: 200 -KNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 239 NNALSALPAELGK------LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
            +    +P  + +       ++    +L    + +   +     +  +  +N+ +  +  
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 63

Query: 293 EIGKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            I  +  + KL L GN L        L++          +K L S     +    S    
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
            +  +   + +   E    G N     + +    ++  L L  N I ++ P L+    LQ
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            L LS+N I D     L  L +L  L+L +
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LDL    I  +    ++      +  S N+I+         L  L  L ++NN + ++  
Sbjct: 23  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE 80

Query: 445 DGFKDIPMLQILDLS-YNIASLPENPPFSSLPHLQELYLRMQLREAPTD-----ILRLQQ 498
              + +P L  L L+  ++  L +  P +SL  L  L +               I ++ Q
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 140

Query: 499 LRILDLSQNSLQ 510
           +R+LD  +  L+
Sbjct: 141 VRVLDFQKVKLK 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 20/60 (33%)

Query: 482 LRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 541
           L  +L E         + R LDL    +  I      L     +D SDN I  L     L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 504 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
           L+   ++   + + N     ELDL    I  +      L     A+    N +R +
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATL-DQFDAIDFSDNEIRKL 56

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
                     ++   +          +L++   +NN +  L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL L G  +  I +      +   +D S N I++L         L+TL+++ N+I    
Sbjct: 21  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIG 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGF----KDIPMLQILDLSYNIASLPENPPFSSLP 475
           + +  +L  L+ L L NN L ++         K +  L IL                 +P
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 476 HLQEL 480
            ++ L
Sbjct: 140 QVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 10/157 (6%)

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469
           L+   I+       T+      L L    +  + +     +     +D S N   + +  
Sbjct: 3   LTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDN--EIRKLD 57

Query: 470 PFSSLPHLQELYL--RMQLREAPTDILRLQQLRILDLSQNSLQSIP--EGFKNLTSLTEL 525
            F  L  L+ L +      R        L  L  L L+ NSL  +   +   +L SLT L
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 526 DLSDNNISALPPELGLLEPSLQALR-LDGNPLRSIRR 561
            +  N ++        +   +  +R LD   ++   R
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 154

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 5e-07
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 477 LQELYLR-MQLREAPTDIL--RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLS 528
           +Q L ++  +L +A    L   LQQ +++ L    L     + I    +   +L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 529 DNNIS-----ALPPELGLLEPSLQALRLDGN 554
            N +       +   L      +Q L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 8e-06
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 497 QQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSL 546
             LR+L L+   +      S+        SL ELDLS+N +       L   +      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 547 QALRLDGNPLRSIRRTILD 565
           + L L            L 
Sbjct: 429 EQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 45  VDLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           +D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 98  VSFNSI 103
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 382 ITKLDLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSC 431
           +  L L+   +       L   L +  SL+ L LS N + D       +++      L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 432 LKLDNNPLRQVPSDGFKDI----PMLQIL 456
           L L +    +   D  + +    P L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 7e-04
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 223 PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA----- 272
                    L   ++ +  +S     +L A L     L  LDL +N L +  +       
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
                 L  L L +   S    +      L+ L      LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 9e-04
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDL 458
            +Q+L +   ++ D     +L  L     ++LD+  L     +  S   +  P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 459 SYN------IASLPENPPFSSLPHLQELYLRMQ 485
             N      +  + +    +    +Q+L L+  
Sbjct: 63  RSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 356 SVTSKELSLEGMNLS-AIPSEIWEA-GEITKLDLSRNSI-----QELPPELSSCASLQTL 408
           S+  + L ++   LS A  +E+     +   + L    +     +++   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKL 434
            L  N++ D     +         K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC--LNLSDFKASNNCIT 150
           ++SLD+    +                  S  +  EL   L +C  + L D   +     
Sbjct: 4   IQSLDIQCEEL------------------SDARWAELLPLLQQCQVVRLDDCGLTEARCK 45

Query: 151 SLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIAS 192
            +   L     +++L++  N+L       +   L      + +L   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 18/102 (17%)

Query: 470 PFSSLPHLQELYLRM------QLREAPTDILRLQQLRILDLSQNSL-----QSIPEGFK- 517
                  L+ L+L                +L    LR LDLS N L       + E  + 
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 518 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
               L +L L D   S    +       LQAL  D   LR I
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTEL 189
           R L L+D   S++  +SL   L     + +LD+  N L       L  ++     +L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 190 IASKNLLNG 198
           +      + 
Sbjct: 432 VLYDIYWSE 440

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 496 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
                ILD+S+  + S+P    +NL  L        N+  LP 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 36/234 (15%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
           +++    +   ++ IPS++       +L      ++ +     S    L+ + +S+N + 
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
           +  +A + S                +  +      +  +  L  +   +   P    +  
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 477 LQE------------------------------LYLRMQLREAPTDILRLQQLRILDLSQ 506
           LQ+                              L                Q   +     
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
           N+L+ +P   F   +    LD+S   I +LP         L+A       L+ +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +  +   N +++ P+ +    S    L +    +  +PS G +++  L+     YN
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YN 234

Query: 462 IASLP 466
           +  LP
Sbjct: 235 LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 24/239 (10%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G        +   
Sbjct: 6   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                      +    +         +          +    +           L     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 393 -------------------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
                               E    +        L L++N I++  +             
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPT 491
            DNN L ++P+D F       ILD+S   I SLP      +L  L+       L++ PT
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTY-NLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 64  LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP 107
                   +L++S  ++  LP+  +  L  L++   S  ++ K+P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSLQA 548
           +  + L++  ++    +S+        S+ E+ LS N I       L   +      L+ 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEI 63

Query: 549 LRLDGNPLRSIRRTI 563
                     ++  I
Sbjct: 64  AEFSDIFTGRVKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 44/339 (12%), Positives = 89/339 (26%), Gaps = 42/339 (12%)

Query: 43  EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           E   L+   +   + + +   L     +  + +S N +       L   I     L+  +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 98  VSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDF-------------- 142
            S     ++ DEI  A   L++      +L  +  S       +                
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 143 ---------------KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                           A      ++ +   +   +  +    N+L   S    A      
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
            L+ +  ++       G    L+    +   +  +    +    L    +     S    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE------IGKMTTLR 301
               L+        +  + +   +   + L  L L  N +              KM  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
            L L GN        +V+          R  L E +D E
Sbjct: 306 FLELNGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 354 RLSVTSKELSLEGM---NLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASL 405
           R S+  K L L+ +   +  ++ + + E   + ++ LS N+I     + L   ++S   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +    S        D I  +L  L    L    L  
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 39/334 (11%), Positives = 81/334 (24%), Gaps = 20/334 (5%)

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSN 284
           SL    +      ++ A L +   +  + L  N +              +  L + + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
                +  EI +   L    L   P       L             ++ P  +     T 
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCP------KLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
            E L      L   +       +   A+  +   A  +  +   RN ++    +  +   
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
               +L   K+             L         L+ +         +            
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL--AIALK 240

Query: 465 LPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEG-FKN 518
              N     L                   L    L+ L L  N +     +++     + 
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 519 LTSLTELDLSDNNISALPPELGLLEPSLQALRLD 552
           +  L  L+L+ N  S     +  +          
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILR-LQQLRILDLSQNSL-- 509
            Q LDL      L  +P   +      L  R  +      I   + +L  L+LS N L  
Sbjct: 24  QQALDLK----GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 510 -QSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559
              +    +   +L  L+LS N + +      +    L+ L LDGN L   
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    +E+LK  +      +   +    L   P  +   ++   L+   +    +     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 112 SATALVKFDCSSNQL---KELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167
           +   L+  + S+N+L    ++ S + +  NL     S N + S  E D     K+ +L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200
           +GN L+    +     + + E       L+G  
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
             L   N++   S+  +  ++T L   R  I+ +   +    +L  +  S N++ D    
Sbjct: 23  TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP- 79

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
                       +D        +D      +  +  L+     + +  P  +L +L  L 
Sbjct: 80  -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 482 LRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 541
           L        + +  L  L+ L+ S N +  +     NLT+L  LD+S N +S +     L
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKL 193

Query: 542 LEPSLQAL 549
              +L++L
Sbjct: 194 --TNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 19  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I         +     ++             L             +   D+     ++ L
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +        +S+    S     + +   +      + + +L+ L RLD+  N++  I   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-V 189

Query: 226 ISGCCSL 232
           ++   +L
Sbjct: 190 LAKLTNL 196

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 4/147 (2%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
           P+         L  +R+   D    +  + +       +   L+ +     + +  L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQ--SIP 513
            +  +         F   P L  L L    L       ++   L+ L LS N L      
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 514 EGFKNLTSLTELDLSDNNIS-ALPPEL 539
              +         + +  +       L
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHS 262
                  L   ++  L     + G  +L E Y+     L  L       L +L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 263 NQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           + L+    +A     RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L    +     L  L   K
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL--SALPAELG 250
           + L  + P+      RL RL+L  N + S+        SL E  +  N L  S     L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 251 KLSKLGTLDLHSNQLK 266
           +  + G   +   +L+
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 40/246 (16%), Positives = 72/246 (29%), Gaps = 42/246 (17%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSR 412
           LS            +    +E +    +  +DLS + I+   L   LS C+ LQ L L  
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPL-------------------------RQVPSDGF 447
            ++ D     L   S+L  L L                                      
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 448 KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQL----------REAPTDILRLQ 497
             +  +       N++   +N   S L  L      +             +   +  +L 
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 498 QLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555
            L+ L LS+              + +L  L +           L LL+ +L  L+++ + 
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG---TLQLLKEALPHLQINCSH 257

Query: 556 LRSIRR 561
             +I R
Sbjct: 258 FTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 18/262 (6%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-- 105
           Q L L   N+            +       + + +  A       ++ +D+S + I    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 106 IPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNL---SDFKASNNCITSLPEDLADCSK 161
           +   +   + L        +L   + ++L +  NL   +    S     +L   L+ CS+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 162 MSKLDVEGNKLTV---LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
           + +L++          +   +      +T+L  S    N     + +L R     +H + 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 219 ILSIPSSISGCCSLAEFYM--------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             S+           +             + +     ELG++  L TL +    + +  +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV-FGIVPDGTL 241

Query: 271 EACQLRLSVLDLSNNSLSGLPP 292
           +  +  L  L ++ +  + +  
Sbjct: 242 QLLKEALPHLQINCSHFTTIAR 263

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            +++A+     EL      +  M  T+ +L     L L  N I  I  S+SG  +L    
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILS 76

Query: 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEI 294
           +G N +  +         L  L +  NQ+         + L VL +SNN ++      ++
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
             +  L  LLL GNPL        N  T      +  RLP
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLP 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	582
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.81

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.8e-26  Score=224.88  Aligned_cols=145  Identities=29%  Similarity=0.411  Sum_probs=103.7

Q ss_pred             ccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEe
Q 007984          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (582)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  457 (582)
                      .+++|+.+++++|.+++++. +..+++|++|++++++++++..  +..++.++.+.+.+|.+..+.  .+..++++++|+
T Consensus       239 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~  313 (384)
T d2omza2         239 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLT  313 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEE
T ss_pred             cccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCc--ccccccccccccccccccccc--ccchhcccCeEE
Confidence            35566666666666666542 5666777777777777766543  566777777777777766643  256677777777


Q ss_pred             CCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCC
Q 007984          458 LSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP  537 (582)
Q Consensus       458 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~  537 (582)
                      +++|++.++.                        .+..+++|++|++++|.++.++ .+.++++|++|++++|+++++++
T Consensus       314 ls~n~l~~l~------------------------~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         314 LYFNNISDIS------------------------PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CCSSCCSCCG------------------------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCCCCCc------------------------ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh
Confidence            7777665432                        2456788888889888888876 57888999999999998888776


Q ss_pred             cccccccccceeeccCC
Q 007984          538 ELGLLEPSLQALRLDGN  554 (582)
Q Consensus       538 ~~~~~~~~L~~L~l~~~  554 (582)
                        +..+++|+.|+|++|
T Consensus       369 --l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 --LANLTRITQLGLNDQ  383 (384)
T ss_dssp             --GTTCTTCSEEECCCE
T ss_pred             --hccCCCCCEeeCCCC
Confidence              455688999998887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=8e-26  Score=222.51  Aligned_cols=340  Identities=24%  Similarity=0.333  Sum_probs=164.4

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      +.+|++|+++++.|+.+ +.+..+++|++|++++|+++.++ .++.+++|++|++++|.+..++. +..+++|+.|++++
T Consensus        43 l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCc-cccCCcccccccccccccccccc-cccccccccccccc
Confidence            34566666666666555 34555666666666666666554 35566666666666666555432 55566666666665


Q ss_pred             CcCCcCCcccccCCCCCeEEcCCCcCCCCcccc-ccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchh
Q 007984          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (582)
Q Consensus       124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (582)
                      +.+..++. ......+.......+.+..+.... ................     ..+.............+.... ...
T Consensus       120 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~  192 (384)
T d2omza2         120 NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLANLTTLERLDISSNKVSD-ISV  192 (384)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccchh-----hhhcccccccccccccccccc-ccc
Confidence            55554432 222334444444433333221110 0001111111100000     002222222222222222211 122


Q ss_pred             hcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEc
Q 007984          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (582)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l  282 (582)
                      ...+++++.++++++.+..++ ....+++|+++++++|.++.++ .+..+++|+.+++++|.++.++......+++++++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  270 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL  270 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccccccceeeccCCccCCCC-cccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeec
Confidence            334445555555555444432 1233444555555555444432 34444555555555544444333322333444444


Q ss_pred             cCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEE
Q 007984          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (582)
Q Consensus       283 ~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (582)
                      +++.+..++. +..++.++.+.+.++                                                      
T Consensus       271 ~~~~l~~~~~-~~~~~~l~~l~~~~n------------------------------------------------------  295 (384)
T d2omza2         271 GANQISNISP-LAGLTALTNLELNEN------------------------------------------------------  295 (384)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSS------------------------------------------------------
T ss_pred             cCcccCCCCc-ccccccccccccccc------------------------------------------------------
Confidence            4443333321 333333333333333                                                      


Q ss_pred             EecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccC
Q 007984          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (582)
Q Consensus       363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~  442 (582)
                           .+..++ .+..+++++.+++++|.+++++ .+..+++|++|++++|++++++  .++.+++|++|++++|+++++
T Consensus       296 -----~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         296 -----QLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             -----CCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBC
T ss_pred             -----cccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCC
Confidence                 333222 2344566777777777777664 3666777777777777776654  266777777777777777766


Q ss_pred             CCccccCCCCCcEEeCCCC
Q 007984          443 PSDGFKDIPMLQILDLSYN  461 (582)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~n  461 (582)
                      .+  +.++++|+.|++++|
T Consensus       367 ~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG--GTTCTTCSEEECCCE
T ss_pred             hh--hccCCCCCEeeCCCC
Confidence            53  667777777777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.7e-23  Score=194.58  Aligned_cols=267  Identities=22%  Similarity=0.308  Sum_probs=210.7

Q ss_pred             hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhh
Q 007984           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (582)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~   87 (582)
                      ..+.+|+++.+++++|..+               .+++++|++++|.++++++ +|.++++|++|+++++.+..+ +..|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l---------------~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC---------------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEecCCCCCccCCCC---------------CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            3467899999999999876               4579999999999999986 799999999999999999977 5579


Q ss_pred             hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCC---CCccccccCCCCc
Q 007984           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (582)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~---~i~~~l~~~~~L~  163 (582)
                      ..+++|++|++++|.++.+|..  ....++.|....+.+..++. .+.....++.++...+...   ..+..+..+++|+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hCCCccCEecccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            9999999999999999988764  34678899999988887654 4556778888888877544   3345678889999


Q ss_pred             EEEccCCcccccchhhhcccccCcEEEccCCccCc-cchhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCc
Q 007984          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA  241 (582)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~  241 (582)
                      .+++.++.+..++..   ..+++++|+++++.... .+..+..++.++.|++++|.+..+ +..+..+++|++|++++|.
T Consensus       154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence            999999988877643   35789999999887754 346778888999999999988865 5667888999999999999


Q ss_pred             CcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCc
Q 007984          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR  311 (582)
Q Consensus       242 i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~  311 (582)
                      ++.+|..+..+++|++|++++|+++.++...+..               +.......+|+.+++++|+++
T Consensus       231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~---------------~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP---------------PGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC---------------SSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccCCCEEECCCCccCccChhhccC---------------cchhcccCCCCEEECCCCcCc
Confidence            9988888888999999999999888765443211               112334455666666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.2e-22  Score=189.37  Aligned_cols=190  Identities=23%  Similarity=0.325  Sum_probs=87.9

Q ss_pred             ccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCC
Q 007984          116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (582)
Q Consensus       116 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~  194 (582)
                      .++++.++..++.+|..+.  +++++|++++|.+..+++ .|..+++|++|+++++.+..+.+..|..+++|+++++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            3444444444444444332  345555555555555543 3455555555555555555555444555555555555555


Q ss_pred             ccCccchhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc---ccchhhhccCCCcEEEcccCcccccch
Q 007984          195 LLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYCV  270 (582)
Q Consensus       195 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~---~l~~~l~~~~~L~~L~l~~~~~~~~~~  270 (582)
                      .++.++..+  ...++.|++.++.+..++. .+.....+..+....+...   ..+..+..+++|+.+++.++.+..++.
T Consensus        90 ~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_          90 QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc
Confidence            555444322  2345555555555544322 2333444444554444333   123344555556666655555544332


Q ss_pred             hhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCC
Q 007984          271 EACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL  310 (582)
Q Consensus       271 ~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~  310 (582)
                      .. ..+++.+++.+|.... .+..+.+++.+++|++++|.+
T Consensus       168 ~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         168 GL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             SC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             cc-CCccCEEECCCCcCCCCChhHhhccccccccccccccc
Confidence            21 2234444444443333 223344444555555544443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.3e-22  Score=182.32  Aligned_cols=208  Identities=27%  Similarity=0.359  Sum_probs=178.6

Q ss_pred             cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ...++++.+.+++.+|..+.  +++++|++++|.++.++. .|..+++|++|++++|+++.++.  ++.+++|++|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccccccc
Confidence            45678999999999998763  689999999999999875 68999999999999999987754  57899999999999


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCCccch
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIPE  514 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~  514 (582)
                      |++..... .+..+++|+.|++++|.+..+....+..++++++|.+ .+.+..++. .+..++.++.+++++|+++.++.
T Consensus        87 N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          87 NQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             SCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             cccccccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence            99988765 4889999999999999999998889999999999999 666766665 45678999999999999998864


Q ss_pred             -hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHh
Q 007984          515 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD  577 (582)
Q Consensus       515 -~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (582)
                       .|..+++|++|+|++|+|+++|..++.. ++|+.|+++||++.-      +........|+++
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~-~~L~~L~L~~Np~~C------dC~~~~l~~wl~~  222 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLC------NCEILYFRRWLQD  222 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECCSCCBCC------SGGGHHHHHHHHH
T ss_pred             cccccccccceeecccCCCcccChhHCCC-CCCCEEEecCCCCCC------CcchHHHHHHHHh
Confidence             4889999999999999999999998876 999999999999863      4444455556554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=1.7e-21  Score=185.05  Aligned_cols=221  Identities=26%  Similarity=0.352  Sum_probs=188.1

Q ss_pred             CccEEEcCCCCcc---chhHhhcCCCCCcEEEcCC-CCCc-ccchhhhCCCCCcEEecCCCcCccC-ChhhhccCCccEE
Q 007984           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF  119 (582)
Q Consensus        46 ~l~~L~l~~~~i~---~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L  119 (582)
                      +++.|+|+++.+.   .+|..+.++++|++|+|++ +.+. .+|..+.++++|++|++++|.+..+ +..+..+++|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5899999999877   5788999999999999987 5666 7899999999999999999998854 5568889999999


Q ss_pred             EccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCCCC-cEEEccCCcccccchhhhcccccCcEEEccCCcc
Q 007984          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (582)
Q Consensus       120 ~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L-~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  196 (582)
                      ++++|.+. .+|..+.+++.++.+++++|.+. .+|..+..+.++ +.+++.+|+++......+..+... .+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999876 66788999999999999999887 678888888776 889999999887776666666544 688887766


Q ss_pred             C-ccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccc
Q 007984          197 N-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       197 ~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~  267 (582)
                      . .++..+..+++++.++++++.+...+..+..+++|+.|++++|.++ .+|..++.+++|++|++++|++++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            4 4667777889999999999988866677888899999999999998 889999999999999999998773

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.3e-21  Score=177.11  Aligned_cols=194  Identities=27%  Similarity=0.372  Sum_probs=110.0

Q ss_pred             CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCC
Q 007984           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (582)
Q Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~   90 (582)
                      ..+|++++.++.+|.++               .+++++|+|++|.++.++ .+|.++++|++|+|++|.++.++ .+..+
T Consensus        13 ~~v~C~~~~L~~iP~~l---------------p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l   76 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTL   76 (266)
T ss_dssp             CEEECTTSCCSSCCSCC---------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCC
T ss_pred             eEEEccCCCCCeeCcCc---------------CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-ccccc
Confidence            34566666666666544               234666666666666554 34556666666666666655543 23445


Q ss_pred             CCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCC
Q 007984           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (582)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~  170 (582)
                      ++|++|++++|.+...+..+.++++|+.|+++++.+..++.                      ..+..+.++++|++.+|
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----------------------GALRGLGELQELYLKGN  134 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS----------------------STTTTCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccceeec----------------------ccccccccccccccccc
Confidence            55555555555555554445555555555555555443322                      22344455555555555


Q ss_pred             cccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984          171 KLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  243 (582)
                      .+..++...+..+++++.+++++|.+..++ ..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            555555555555555566666665555544 3455566667777777666666666666677777777776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.9e-21  Score=178.29  Aligned_cols=216  Identities=21%  Similarity=0.350  Sum_probs=130.2

Q ss_pred             ceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCcccch-hhhCC
Q 007984           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGEL   90 (582)
Q Consensus        13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l~~-~~~~~   90 (582)
                      .+++++.+++.+|..+               .+++++|+|++|.+++++. .|..+++|++|+++++.+..++. .+..+
T Consensus        15 ~v~c~~~~L~~iP~~i---------------p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~   79 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (284)
T ss_dssp             EEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             EEEcCCCCCCccCCCC---------------CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc
Confidence            4567777777777665               3457778888777777764 57777777777777777775533 45566


Q ss_pred             CCCcEEecC-CCcCccC-ChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEE
Q 007984           91 HMLKSLDVS-FNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD  166 (582)
Q Consensus        91 ~~L~~L~l~-~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~  166 (582)
                      ..++.+... .+.+..+ +..+.++++|++|++++|.+..++. .+....+|+.+++++|.++.++ ..|..+++|++|+
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence            677776654 3355555 4446667777777777776665432 4455666666666666666554 3355666666666


Q ss_pred             ccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCC-cCCcCCCCCcEEEcCCCcCc
Q 007984          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALS  243 (582)
Q Consensus       167 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~  243 (582)
                      +++|+++.+++.++.++++|+.+++++|.+..+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            666666666655555555566555555555443 344555555555555555554432 23444444444444444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-20  Score=172.75  Aligned_cols=220  Identities=29%  Similarity=0.366  Sum_probs=140.6

Q ss_pred             EEEcccCcccccchhhhcccccEEEccCCCCCCCCc-cccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCC
Q 007984          257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE  335 (582)
Q Consensus       257 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (582)
                      .++.++.+++.+|.. .+..+++|++++|+++.++. .|.++++|++++++++.+..+....+                 
T Consensus        15 ~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~-----------------   76 (284)
T d1ozna_          15 TTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----------------   76 (284)
T ss_dssp             EEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-----------------
T ss_pred             EEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccc-----------------
Confidence            345555566666543 23446777777777766654 36667777777777766543322111                 


Q ss_pred             CCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcC-CCcCCcCCc-cccCCCCCCEEEcccC
Q 007984          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS-RNSIQELPP-ELSSCASLQTLILSRN  413 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~-~~~l~~l~~-~l~~~~~L~~L~l~~~  413 (582)
                                                               .....++.+... .+.+..++. .+..+++|++|++++|
T Consensus        77 -----------------------------------------~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          77 -----------------------------------------TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             -----------------------------------------TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             -----------------------------------------cccccccccccccccccccccchhhcccccCCEEecCCc
Confidence                                                     113445555543 334555533 5667777777777777


Q ss_pred             cCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhh
Q 007984          414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDI  493 (582)
Q Consensus       414 ~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  493 (582)
                      .+..+....+...++|+.+++++|.++.++...|..+++|++|++++|.+..+.+.+|.                     
T Consensus       116 ~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~---------------------  174 (284)
T d1ozna_         116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR---------------------  174 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT---------------------
T ss_pred             ccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc---------------------
Confidence            77666666666777777777777777777766677777777777777777665554444                     


Q ss_pred             hccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCC
Q 007984          494 LRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  557 (582)
Q Consensus       494 ~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~  557 (582)
                       ++++|+.+++++|++..+ |..|.++++|++|++++|+++++++..+..+++|+.|++++|++.
T Consensus       175 -~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         175 -GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             -TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             -cccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence             456677777777777655 455677777777777777777776666666677777777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=4.9e-21  Score=181.78  Aligned_cols=241  Identities=24%  Similarity=0.358  Sum_probs=204.0

Q ss_pred             hcCceecCCCCCC---CcchHHHhhhccccCCCccccccCccEEEcCC-CCcc-chhHhhcCCCCCcEEEcCCCCCccc-
Q 007984           10 TSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLSEL-   83 (582)
Q Consensus        10 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~-~~i~-~~~~~~~~~~~L~~L~L~~~~~~~l-   83 (582)
                      .+..|+++++.+.   .+|..+..             +++|++|++++ +.++ .+|..|.++++|++|+|++|.+..+ 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-------------L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-------------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-------------Cccccccccccccccccccccccccccccchhhhccccccccc
Confidence            3667888888776   46666543             89999999997 6676 7899999999999999999999865 


Q ss_pred             chhhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCcCC-cCCcccccCCCC-CeEEcCCCcCC-CCccccccC
Q 007984           84 PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNL-SDFKASNNCIT-SLPEDLADC  159 (582)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L-~~L~l~~~~~~-~i~~~l~~~  159 (582)
                      +..+..+.+|+++++++|.+. .+|..+.++++++++++++|.+. .+|..+..+..+ +.+++++|.+. ..+..+..+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            556889999999999999766 67889999999999999999987 778888887776 88999999887 444556665


Q ss_pred             CCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcC
Q 007984          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG  238 (582)
Q Consensus       160 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~  238 (582)
                      .. ..+++..+......+..+..+++++.+++.++.+...+..+..+++|+.|++++|+++ .+|..+.++++|++|+++
T Consensus       198 ~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         198 NL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cc-cccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            44 4799998888776666688899999999999999877777888999999999999999 789999999999999999


Q ss_pred             CCcCc-ccchhhhccCCCcEEEcccCcc
Q 007984          239 NNALS-ALPAELGKLSKLGTLDLHSNQL  265 (582)
Q Consensus       239 ~~~i~-~l~~~l~~~~~L~~L~l~~~~~  265 (582)
                      +|.++ .+| .++.+++|+.+++++|+.
T Consensus       277 ~N~l~g~iP-~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         277 FNNLCGEIP-QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SSEEEEECC-CSTTGGGSCGGGTCSSSE
T ss_pred             CCcccccCC-CcccCCCCCHHHhCCCcc
Confidence            99998 676 457788899888888863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=5.7e-18  Score=163.61  Aligned_cols=87  Identities=26%  Similarity=0.305  Sum_probs=56.8

Q ss_pred             CCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc
Q 007984          429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS  508 (582)
Q Consensus       429 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  508 (582)
                      ....++..+.+..+.    ..+++|++|++++|++..+..                          .+++|+.|++++|+
T Consensus       266 ~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~N~l~~lp~--------------------------~~~~L~~L~L~~N~  315 (353)
T d1jl5a_         266 LYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA--------------------------LPPRLERLIASFNH  315 (353)
T ss_dssp             CCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCC--------------------------CCTTCCEEECCSSC
T ss_pred             hcccccccCcccccc----ccCCCCCEEECCCCccCcccc--------------------------ccCCCCEEECCCCc
Confidence            344555555554443    235677777777776654321                          13677888888888


Q ss_pred             CCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeecc
Q 007984          509 LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLD  552 (582)
Q Consensus       509 l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~  552 (582)
                      ++.+|..   +++|++|++++|+++.+|.    .+.+|+.|.+.
T Consensus       316 L~~l~~~---~~~L~~L~L~~N~L~~lp~----~~~~L~~L~~~  352 (353)
T d1jl5a_         316 LAEVPEL---PQNLKQLHVEYNPLREFPD----IPESVEDLRMN  352 (353)
T ss_dssp             CSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECC
T ss_pred             CCccccc---cCCCCEEECcCCcCCCCCc----cccccCeeECc
Confidence            8887753   4578888888888888876    23567777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=7.5e-18  Score=162.77  Aligned_cols=139  Identities=29%  Similarity=0.351  Sum_probs=80.0

Q ss_pred             cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC
Q 007984           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (582)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  124 (582)
                      .++++|+++++.++.+|+.   .++|++|++++++++.+|+.   ..+|+.|++++|.+..++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            3577777777777766642   35677777777777766643   34667777777766655421   234667777777


Q ss_pred             cCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc
Q 007984          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (582)
Q Consensus       125 ~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~  198 (582)
                      .+..+|. +.++++|+.|+++++.+...+..   ...+..+.+..........  +..++.++.+.+..+....
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~--l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc-hhhhccceeeccccccccccccc---cccccchhhcccccccccc--ccccccceecccccccccc
Confidence            6666653 45566677777666665544332   2344555554443332221  4445555555555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=9.6e-19  Score=157.12  Aligned_cols=202  Identities=21%  Similarity=0.301  Sum_probs=121.4

Q ss_pred             EEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcC
Q 007984           50 LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL  129 (582)
Q Consensus        50 L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l  129 (582)
                      ++++...++.+. .++.+.+|+.|++.+|+++.+ +.+..+++|++|++++|.+..+.. +..+++++++++++|.++.+
T Consensus        24 ~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          24 IAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             HHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC
T ss_pred             HHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccccccc
Confidence            344444444321 223345566666666666655 345666666666666666655432 55666666666666666655


Q ss_pred             CcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCc
Q 007984          130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL  209 (582)
Q Consensus       130 ~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L  209 (582)
                      + .+.++++|+.++++++....+ ..+...+.++.+.++.+.+.....  +..+++|+++++.+|.+...+ .+..+++|
T Consensus       101 ~-~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L  175 (227)
T d1h6ua2         101 S-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKL  175 (227)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred             c-ccccccccccccccccccccc-chhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-hhcccccc
Confidence            3 355666666666666655544 235555666666666665554433  556666667766666665443 25566777


Q ss_pred             cEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcc
Q 007984          210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (582)
Q Consensus       210 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~  261 (582)
                      +.|++++|.++.++ .++.+++|++|++++|+++.++. ++.+++|+.|+++
T Consensus       176 ~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         176 TTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             eecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            77777777766653 36667777777777777776653 6677777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.4e-20  Score=183.99  Aligned_cols=72  Identities=22%  Similarity=0.135  Sum_probs=52.6

Q ss_pred             ccCCCCEEecCCCcCCc-----cchhhcCCCCCCEEeCCCCcCCcC-----CCcccccccccceeeccCCCCCcchHHHh
Q 007984          495 RLQQLRILDLSQNSLQS-----IPEGFKNLTSLTELDLSDNNISAL-----PPELGLLEPSLQALRLDGNPLRSIRRTIL  564 (582)
Q Consensus       495 ~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  564 (582)
                      ..+.|++|++++|+++.     ++..+..+++|++|+|++|+++.-     ...+......|+.|++++|.+.+....++
T Consensus       367 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             ccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            46789999999999873     455678889999999999998741     11222232579999999999876555554


Q ss_pred             cc
Q 007984          565 DR  566 (582)
Q Consensus       565 ~~  566 (582)
                      +.
T Consensus       447 ~~  448 (460)
T d1z7xw1         447 QA  448 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-19  Score=182.04  Aligned_cols=376  Identities=20%  Similarity=0.211  Sum_probs=200.7

Q ss_pred             CCcEEecCCCcCcc--CChhhhccCCccEEEccCCcCC-----cCCcccccCCCCCeEEcCCCcCCC-----Ccccccc-
Q 007984           92 MLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITS-----LPEDLAD-  158 (582)
Q Consensus        92 ~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~-  158 (582)
                      +|++||+++++++.  +..-+..++++++|++++|.++     .++..+..+++|++|++++|.+++     +.+.+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46677777776663  2333455666677777776655     223344556666666666665541     1122221 


Q ss_pred             CCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC-----CcCC-cCCCCC
Q 007984          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-----PSSI-SGCCSL  232 (582)
Q Consensus       159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~l-~~~~~L  232 (582)
                      ..+|++|++++|.+++.+...                   ++..+..+++|++|++++|.+...     ...+ ......
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~-------------------l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~  143 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGV-------------------LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL  143 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHH-------------------HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             CCCCCEEECCCCCcccccccc-------------------ccchhhccccccccccccccchhhhhhhhhhccccccccc
Confidence            234566666555554332211                   112233344444444444443310     0000 111122


Q ss_pred             cEEEcCCCcCc-----ccchhhhccCCCcEEEcccCcccccchh-------hhcccccEEEccCCCCCCC-----Ccccc
Q 007984          233 AEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGL-----PPEIG  295 (582)
Q Consensus       233 ~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~~~~~-------~~~~~L~~l~l~~~~l~~~-----~~~l~  295 (582)
                      .........+.     .+...+.....++.+.++.+........       ........+++..+.+...     ...+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  223 (460)
T d1z7xw1         144 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA  223 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred             ccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            22333322222     1122334456667777766654422111       1112245556655544331     12244


Q ss_pred             CCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccC---
Q 007984          296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---  372 (582)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i---  372 (582)
                      ..+.++.+.+.++.+...                              ...............++.+++.++.+...   
T Consensus       224 ~~~~~~~l~~~~n~~~~~------------------------------~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~  273 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDV------------------------------GMAELCPGLLHPSSRLRTLWIWECGITAKGCG  273 (460)
T ss_dssp             HCTTCCEEECCSSBCHHH------------------------------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccccccccchhhcccccc------------------------------ccchhhcccccccccccccccccccccccccc
Confidence            566777777777654211                              01111222333345677777777766522   


Q ss_pred             --ChhhhccCCccEEEcCCCcCCc-----CCcc-ccCCCCCCEEEcccCcCCCCChHH----hhCCCCCCEeeCCCCCCc
Q 007984          373 --PSEIWEAGEITKLDLSRNSIQE-----LPPE-LSSCASLQTLILSRNKIKDWPDAI----LTSLSSLSCLKLDNNPLR  440 (582)
Q Consensus       373 --~~~~~~~~~L~~L~l~~~~l~~-----l~~~-l~~~~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~l~  440 (582)
                        ...+...+.++.+++++|.+++     +... ......|+.++++++.+++.....    +..+++|++|++++|+++
T Consensus       274 ~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         274 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             cccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeeccc
Confidence              2334457788888888887754     1111 123467888888888877654333    345678899999888876


Q ss_pred             cCCCc----cc-cCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCc----
Q 007984          441 QVPSD----GF-KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS----  511 (582)
Q Consensus       441 ~~~~~----~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----  511 (582)
                      +....    ++ ...+.|++|++++|.+++..                  ...+...+..+++|++|++++|.++.    
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~------------------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  415 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSS------------------CSSLAATLLANHSLRELDLSNNCLGDAGIL  415 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH------------------HHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHH------------------HHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence            52211    12 34567888888888765321                  12234456778999999999999873    


Q ss_pred             -cchhhc-CCCCCCEEeCCCCcCCc
Q 007984          512 -IPEGFK-NLTSLTELDLSDNNISA  534 (582)
Q Consensus       512 -l~~~~~-~l~~L~~L~l~~n~l~~  534 (582)
                       +...+. +...|+.|++.+|.+..
T Consensus       416 ~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         416 QLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHhCCCccCEEECCCCCCCH
Confidence             223343 34479999999998773

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.3e-17  Score=149.71  Aligned_cols=187  Identities=21%  Similarity=0.334  Sum_probs=162.9

Q ss_pred             ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (582)
                      +.+|++|++.++.++.+ +.+.++++|++|++++|.+..+. .+..+++|+++++++|.++.++ .+..+++|+.+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            67899999999999988 46899999999999999998874 5899999999999999988875 477899999999999


Q ss_pred             CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (582)
Q Consensus       124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (582)
                      +....++ .+...+.++.+.++.+.+... ..+..+++|++|++.++.+....+  ++++++|++|++++|.++.++. +
T Consensus       117 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~-l  191 (227)
T d1h6ua2         117 TQITDVT-PLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-L  191 (227)
T ss_dssp             SCCCCCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             ccccccc-hhccccchhhhhchhhhhchh-hhhccccccccccccccccccchh--hcccccceecccCCCccCCChh-h
Confidence            8887663 466788999999999888765 357788999999999998886655  8899999999999999988754 7


Q ss_pred             cCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCC
Q 007984          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN  239 (582)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~  239 (582)
                      ..+++|+.|++++|+++.++ .++++++|+.|++++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             cCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            88999999999999999885 488999999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=7.3e-18  Score=148.83  Aligned_cols=165  Identities=29%  Similarity=0.352  Sum_probs=129.1

Q ss_pred             cCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeC
Q 007984          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  458 (582)
                      +.+|++|++++|.+++++ .+..+++|++|++++|++++++.  ++.+++|++|++++|++++++  .+..+++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc--ccccccccccccc
Confidence            457788888888887765 46778888888888888887654  577888888888888887765  3677888888888


Q ss_pred             CCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984          459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  538 (582)
Q Consensus       459 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~  538 (582)
                      ++|.+..+.  .+..++.++.+++..+.......+..+++|+.+++++|+++.++ .+.++++|++|++++|++++++. 
T Consensus       120 ~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~l~~-  195 (210)
T d1h6ta2         120 EHNGISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA-  195 (210)
T ss_dssp             TTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCCChh-
Confidence            888776543  46777778887773333333446778899999999999999886 48899999999999999999874 


Q ss_pred             ccccccccceeeccC
Q 007984          539 LGLLEPSLQALRLDG  553 (582)
Q Consensus       539 ~~~~~~~L~~L~l~~  553 (582)
                       +..+++|++|+|++
T Consensus       196 -l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 -LAGLKNLDVLELFS  209 (210)
T ss_dssp             -GTTCTTCSEEEEEE
T ss_pred             -hcCCCCCCEEEccC
Confidence             55569999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7.3e-17  Score=141.10  Aligned_cols=160  Identities=22%  Similarity=0.371  Sum_probs=76.6

Q ss_pred             cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC
Q 007984           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (582)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  124 (582)
                      .++++|+++++.++.+. .+..+++|++|++++|+++.++. +..+++|++|++++|.+..++ .+.++++|+.|+++++
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccc
Confidence            44555555555554442 34445555555555555544432 444555555555555444443 2444455555555444


Q ss_pred             cCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhc
Q 007984          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (582)
Q Consensus       125 ~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (582)
                      ....+                        ..+..+++|+.|++++|++..++.  +..+++++.+++.+|.+..++ .+.
T Consensus       117 ~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~-~l~  169 (199)
T d2omxa2         117 QITDI------------------------DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLK-PLA  169 (199)
T ss_dssp             CCCCC------------------------GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGT
T ss_pred             ccccc------------------------cccchhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCc-ccc
Confidence            44433                        234444445555554444443332  444455555555555444443 244


Q ss_pred             CCCCccEEeCCCCcCccCCcCCcCCCCCcEE
Q 007984          205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEF  235 (582)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  235 (582)
                      .+++|+.|++++|.++.++ .++.+++|+.|
T Consensus       170 ~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            5555555555555555442 34455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.4e-17  Score=143.73  Aligned_cols=102  Identities=19%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             CCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCC
Q 007984           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (582)
Q Consensus        68 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  147 (582)
                      ..|++|+++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++.++ .+..+++|+.|++.++
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccc
Confidence            34555555555554442 2444555555555555554443 2344555555555555554443 3444455555555555


Q ss_pred             cCCCCccccccCCCCcEEEccCCccc
Q 007984          148 CITSLPEDLADCSKMSKLDVEGNKLT  173 (582)
Q Consensus       148 ~~~~i~~~l~~~~~L~~L~l~~~~i~  173 (582)
                      .+..+ ..+..+++++.++++++.+.
T Consensus       123 ~~~~~-~~l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         123 GISDI-NGLVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             CCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred             ccccc-cccccccccccccccccccc
Confidence            44443 23444455555555444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.9e-17  Score=140.21  Aligned_cols=162  Identities=23%  Similarity=0.372  Sum_probs=130.8

Q ss_pred             CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (582)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~  168 (582)
                      .++++++|+++++.+..+. .+..+++|++|++++|+++.++. +.++++|++|++++|.+..++ .++.+++|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccc
Confidence            4556666777666666653 36667777777777777776643 677788888888888777764 57888999999999


Q ss_pred             CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (582)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~  248 (582)
                      ++....+..  +..+++|+.+++++|.+..++ .+..+++|+.|++.+|.++.++ .++++++|++|++++|+++.++ .
T Consensus       115 ~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~  189 (199)
T d2omxa2         115 NNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-V  189 (199)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-G
T ss_pred             ccccccccc--cchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-c
Confidence            988877654  788999999999999988765 5788999999999999998875 5889999999999999999875 5


Q ss_pred             hhccCCCcEE
Q 007984          249 LGKLSKLGTL  258 (582)
Q Consensus       249 l~~~~~L~~L  258 (582)
                      ++.+++|++|
T Consensus       190 l~~L~~L~~L  199 (199)
T d2omxa2         190 LAKLTNLESL  199 (199)
T ss_dssp             GGGCTTCSEE
T ss_pred             ccCCCCCCcC
Confidence            7889999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=149.02  Aligned_cols=208  Identities=19%  Similarity=0.285  Sum_probs=157.5

Q ss_pred             ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeC
Q 007984          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKL  434 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l  434 (582)
                      +..+.+++.+.+++.+|..+.  +++++|++++|.++.++. .|.++++|++|++++|.+.. ++...|..+++++++.+
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            345678888888888887664  578999999999988876 57889999999999998765 45566788999999988


Q ss_pred             CC-CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh----ccccccCch-hhhcc-CCCCEEecCCC
Q 007984          435 DN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL----RMQLREAPT-DILRL-QQLRILDLSQN  507 (582)
Q Consensus       435 ~~-~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l----~~~~~~~~~-~~~~~-~~L~~L~l~~~  507 (582)
                      .. +.+..+....|..+++|+++++++|.+.....  +..+.+++.+..    ...+..++. .+..+ ..++.|++++|
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             cccccccccccccccccccccccccchhhhccccc--ccccccccccccccccccccccccccccccccccceeeecccc
Confidence            64 67878887888999999999999998876543  333444444433    323444432 33333 47888999999


Q ss_pred             cCCccchhhcCCCCCCEEe-CCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccch
Q 007984          508 SLQSIPEGFKNLTSLTELD-LSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGT  568 (582)
Q Consensus       508 ~l~~l~~~~~~l~~L~~L~-l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  568 (582)
                      +++.++......++++++. +.+|+++.+|...+..+++|+.|++++|++.+++..+|....
T Consensus       164 ~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         164 GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            9988876656667766664 566789999888888889999999999999988887777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-16  Score=143.81  Aligned_cols=176  Identities=19%  Similarity=0.237  Sum_probs=93.6

Q ss_pred             cCCccEEEcCCCcCCc-CCc-cccCCCCCCEEEccc-CcCCCCChHHhhCCCCCCEeeCCCCCCccCCCcc-ccCCCCCc
Q 007984          379 AGEITKLDLSRNSIQE-LPP-ELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQ  454 (582)
Q Consensus       379 ~~~L~~L~l~~~~l~~-l~~-~l~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~~~~L~  454 (582)
                      +++|++|++++|.+.. ++. .|..++.++++.+.. +.+.......|.++++|+++++++|.+....... +..+..+.
T Consensus        52 l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~  131 (242)
T d1xwdc1          52 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  131 (242)
T ss_dssp             CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEE
T ss_pred             cchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccc
Confidence            3344444444443332 211 234444444444432 2333333333444444444444444444332211 12233333


Q ss_pred             EEeCCCCcCCCCCCCCCCCCc-cchhhhh-ccccccCchhhhccCCCCEE-ecCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007984          455 ILDLSYNIASLPENPPFSSLP-HLQELYL-RMQLREAPTDILRLQQLRIL-DLSQNSLQSIPEG-FKNLTSLTELDLSDN  530 (582)
Q Consensus       455 ~L~l~~n~l~~~~~~~~~~~~-~L~~L~l-~~~~~~~~~~~~~~~~L~~L-~l~~~~l~~l~~~-~~~l~~L~~L~l~~n  530 (582)
                      .+..+++.+..+....|.+++ .++.+++ ++.+..++......++++++ ++++|+++.+|.. |.++++|++|++++|
T Consensus       132 ~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             cccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence            333344444443333344332 3444444 33334444444445565555 4677889999754 899999999999999


Q ss_pred             cCCcCCCcccccccccceeeccCC
Q 007984          531 NISALPPELGLLEPSLQALRLDGN  554 (582)
Q Consensus       531 ~l~~l~~~~~~~~~~L~~L~l~~~  554 (582)
                      +++++|...+..++.|+.+++.+.
T Consensus       212 ~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         212 RIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cCCccCHHHHcCCcccccCcCCCC
Confidence            999999988888788888887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=6.8e-16  Score=133.94  Aligned_cols=124  Identities=23%  Similarity=0.293  Sum_probs=101.0

Q ss_pred             ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCc-CC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL  434 (582)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  434 (582)
                      +..+.+++++.+++.+|..+  .+++++|++++|.++. ++ ..|..+++|++|++++|.+..++...+..+++|++|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             EcCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            34567888888999998876  3688999999999875 43 36788899999999999998888888889999999999


Q ss_pred             CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (582)
Q Consensus       435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  482 (582)
                      ++|++..+++.+|.++++|++|+|++|.++.+.+.+|..+++|++|++
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccc
Confidence            999999998888999999999999999988877766665544444333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=3.2e-15  Score=129.63  Aligned_cols=127  Identities=24%  Similarity=0.345  Sum_probs=93.8

Q ss_pred             ccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (582)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  460 (582)
                      .+.++.++++++.+|..+.  +++++|++++|.++. .....|..+++|+.|++++|.+..+....|..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3578888888999987653  678999999999875 5566788899999999999999888888888899999999999


Q ss_pred             CcCCCCCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCC
Q 007984          461 NIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQ  510 (582)
Q Consensus       461 n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~  510 (582)
                      |++..+.+.+|.++++|++|+| .+.+..++. .+..+++|++|++++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            9888887777776665555555 444444433 2445555555555555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.8e-15  Score=124.43  Aligned_cols=127  Identities=22%  Similarity=0.214  Sum_probs=89.6

Q ss_pred             CccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChh-hhccCCcc
Q 007984           39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALV  117 (582)
Q Consensus        39 ~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~  117 (582)
                      ..|.++..+|+|++++|.|+.++..+..+++|++|++++|.++.+ +.+..+++|++|++++|.+..++.. +..+++|+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            345567778888888888887766666778888888888888776 3577778888888888887777554 45677788


Q ss_pred             EEEccCCcCCcCCc--ccccCCCCCeEEcCCCcCCCCcc----ccccCCCCcEEE
Q 007984          118 KFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLD  166 (582)
Q Consensus       118 ~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~i~~----~l~~~~~L~~L~  166 (582)
                      +|++++|.+..++.  .+..+++|++|++++|.+...+.    .+..+++|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888777776543  45666777777777776665543    255566666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=9.6e-15  Score=139.71  Aligned_cols=224  Identities=17%  Similarity=0.172  Sum_probs=150.4

Q ss_pred             ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc-----------cchhhhCCCCCcEEecCCCcCcc--
Q 007984           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----------LPAAIGELHMLKSLDVSFNSIMK--  105 (582)
Q Consensus        44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-----------l~~~~~~~~~L~~L~l~~~~~~~--  105 (582)
                      ...+++|+|+++.+.     .+.+.+..+++|+.+++.++....           +...+..+++|++|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            677888888888775     344567778888888888765431           22345677889999998887763  


Q ss_pred             ---CChhhhccCCccEEEccCCcCCc-----CCc---------ccccCCCCCeEEcCCCcCC-----CCccccccCCCCc
Q 007984          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPS---------SLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMS  163 (582)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~~~~-----l~~---------~~~~~~~L~~L~l~~~~~~-----~i~~~l~~~~~L~  163 (582)
                         +...+..+++|++|++++|.+..     +..         .....+.|+.+.++++.+.     .+...+..+++|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               33445567889999998887641     101         1235678899999888776     3344567788999


Q ss_pred             EEEccCCccccc-----chhhhcccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCcc-----CCcCCc-
Q 007984          164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSIS-  227 (582)
Q Consensus       164 ~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~-  227 (582)
                      +|++++|.+...     ....+..+++|+.|++++|.+..     +...+..+++|++|++++|.+..     +...+. 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            999999887642     12235667788888888887632     33456677888888888887662     222232 


Q ss_pred             -CCCCCcEEEcCCCcCcc-----cchhhh-ccCCCcEEEcccCcccc
Q 007984          228 -GCCSLAEFYMGNNALSA-----LPAELG-KLSKLGTLDLHSNQLKE  267 (582)
Q Consensus       228 -~~~~L~~L~l~~~~i~~-----l~~~l~-~~~~L~~L~l~~~~~~~  267 (582)
                       ..+.|++|++++|.++.     +...+. ..++|++|++++|.+..
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence             23567777777777662     233332 45677777777777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4.6e-14  Score=111.70  Aligned_cols=100  Identities=24%  Similarity=0.453  Sum_probs=47.5

Q ss_pred             EEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC
Q 007984           72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS  151 (582)
Q Consensus        72 ~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  151 (582)
                      +|++++++++.++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+.++++|++|++++|.+..
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCC
Confidence            4444444444443 244444455555554444444444444445555555555444443 24444455555555554443


Q ss_pred             Cc--cccccCCCCcEEEccCCccc
Q 007984          152 LP--EDLADCSKMSKLDVEGNKLT  173 (582)
Q Consensus       152 i~--~~l~~~~~L~~L~l~~~~i~  173 (582)
                      ++  ..+..+++|+.|++++|+++
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcCC
Confidence            33  23444555555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-14  Score=132.72  Aligned_cols=125  Identities=14%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEcc
Q 007984           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCS  122 (582)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~  122 (582)
                      .+..+.++...+............|++|+++++.++  .+...+.++++|++|++++|.+. ..+..+..+++|++|+++
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            345555555443332222334456777777777665  23445667777777777777655 233445566777777777


Q ss_pred             CCc-CCc--CCcccccCCCCCeEEcCCCc-CCC--Cccccc-cCCCCcEEEccCC
Q 007984          123 SNQ-LKE--LPSSLGRCLNLSDFKASNNC-ITS--LPEDLA-DCSKMSKLDVEGN  170 (582)
Q Consensus       123 ~~~-~~~--l~~~~~~~~~L~~L~l~~~~-~~~--i~~~l~-~~~~L~~L~l~~~  170 (582)
                      +|. +++  +.....++++|++|++++|. +.+  +...+. .+++|+.|+++++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            653 331  12223456666666666652 221  111122 2345666666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=134.33  Aligned_cols=80  Identities=20%  Similarity=0.194  Sum_probs=35.6

Q ss_pred             cCccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCc-ccchhhhCCCCCcEEecCCC-cCcc--CChhhhccCCccE
Q 007984           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMK--IPDEIGSATALVK  118 (582)
Q Consensus        45 ~~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~~--l~~~~~~~~~L~~  118 (582)
                      .+|++|+++++.+.  .+...+.++++|++|++++|.++ ..+..+..+++|++|++++| .++.  +...+.++++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            34555555554443  12333445555555555555444 22234444555555555543 2321  1112234455555


Q ss_pred             EEccCC
Q 007984          119 FDCSSN  124 (582)
Q Consensus       119 L~l~~~  124 (582)
                      |++++|
T Consensus       126 L~ls~c  131 (284)
T d2astb2         126 LNLSWC  131 (284)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.2e-14  Score=112.67  Aligned_cols=101  Identities=29%  Similarity=0.424  Sum_probs=58.5

Q ss_pred             cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCC
Q 007984           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (582)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  127 (582)
                      |+|+++++.++.++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++ .+..+++|++|++++|++.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            45556666555553 355555666666666666655555555666666666666665553 3555666666666666665


Q ss_pred             cCC--cccccCCCCCeEEcCCCcCC
Q 007984          128 ELP--SSLGRCLNLSDFKASNNCIT  150 (582)
Q Consensus       128 ~l~--~~~~~~~~L~~L~l~~~~~~  150 (582)
                      .++  ..+..+++|+.|++++|.+.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            443  24555666666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-14  Score=119.68  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=38.3

Q ss_pred             ccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEc
Q 007984          112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA  191 (582)
Q Consensus       112 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l  191 (582)
                      +..++++|++++|+++.++..+..+++|+.|++++|.+..+ +.+..+++|++|++++|+++.++...+..+++|++|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            33444444444444444433333444444444444444444 23444445555555555554444433344444444444


Q ss_pred             cCCccC
Q 007984          192 SKNLLN  197 (582)
Q Consensus       192 ~~~~~~  197 (582)
                      ++|.+.
T Consensus        95 ~~N~i~  100 (162)
T d1a9na_          95 TNNSLV  100 (162)
T ss_dssp             CSCCCC
T ss_pred             cccccc
Confidence            444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=2.9e-14  Score=136.33  Aligned_cols=234  Identities=21%  Similarity=0.183  Sum_probs=123.0

Q ss_pred             chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCccC-----------ChhhhccCCccEEEcc
Q 007984           59 KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMKI-----------PDEIGSATALVKFDCS  122 (582)
Q Consensus        59 ~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~l-----------~~~~~~~~~L~~L~l~  122 (582)
                      .+...+.....+++|+|++|.+.     .+...+...++|+.++++++.....           ...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44456677788888888888765     2334566677888888876654322           1223445666667766


Q ss_pred             CCcCCc-----CCcccccCCCCCeEEcCCCcCCC-----Cccc---------cccCCCCcEEEccCCcccccchhhhccc
Q 007984          123 SNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPED---------LADCSKMSKLDVEGNKLTVLSNNLIASW  183 (582)
Q Consensus       123 ~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----i~~~---------l~~~~~L~~L~l~~~~i~~~~~~~~~~~  183 (582)
                      +|.+..     +...+..+++|+.|++++|.+..     +...         ....+.|+.+.++++++..-....    
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~----  177 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----  177 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc----
Confidence            666542     22233455566666666655431     1011         123344555555444443221111    


Q ss_pred             ccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCcc------CCcCCcCCCCCcEEEcCCCcCc-----ccchhhhcc
Q 007984          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALS-----ALPAELGKL  252 (582)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~i~-----~l~~~l~~~  252 (582)
                                     +...+..++.|+.|++++|.+..      +...+..+++|+.|++++|.++     .+...+..+
T Consensus       178 ---------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         178 ---------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  242 (344)
T ss_dssp             ---------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             ---------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence                           12233344555555555555431      1233445555666666655554     123344555


Q ss_pred             CCCcEEEcccCcccccchhhh--------cccccEEEccCCCCCC-----CCcccc-CCCCCCeEEccCCCCc
Q 007984          253 SKLGTLDLHSNQLKEYCVEAC--------QLRLSVLDLSNNSLSG-----LPPEIG-KMTTLRKLLLTGNPLR  311 (582)
Q Consensus       253 ~~L~~L~l~~~~~~~~~~~~~--------~~~L~~l~l~~~~l~~-----~~~~l~-~~~~L~~L~l~~~~~~  311 (582)
                      ++|++|++++|.++.......        ...+++|++++|.+..     +...+. ++++|++|++++|.+.
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            666666666666553221111        1236666666666543     222332 5678899999998874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=1.1e-14  Score=126.26  Aligned_cols=128  Identities=28%  Similarity=0.323  Sum_probs=88.8

Q ss_pred             cCccEEEcCCC--CccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984           45 VDLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (582)
Q Consensus        45 ~~l~~L~l~~~--~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (582)
                      ...+.+++++.  .+++++..+..+++|++|+|++|.++.++ .+..+++|++|++++|.+..++.....+++|++|+++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccc
Confidence            44566677654  35666677777788888888888777764 5777777888888877777776555556677777777


Q ss_pred             CCcCCcCCcccccCCCCCeEEcCCCcCCCCc--cccccCCCCcEEEccCCcccc
Q 007984          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTV  174 (582)
Q Consensus       123 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~  174 (582)
                      +|.++.++ .+.++++|+.|++++|.+..++  ..+..+++|++|++++|++..
T Consensus       102 ~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            77777653 4566677777777777776654  246667777777777766553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=4.1e-14  Score=122.52  Aligned_cols=127  Identities=21%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             CCcEEEcCCC--CCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCC
Q 007984           69 LLTVLNVSHN--KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (582)
Q Consensus        69 ~L~~L~L~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  146 (582)
                      ..+.+++.+.  .+..++.++..+++|++|++++|.+..++ .+..+++|++|++++|.++.++.....+++|+.|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            4455565543  35566667778888888888888777774 47777788888888887777765555556677777777


Q ss_pred             CcCCCCccccccCCCCcEEEccCCcccccch-hhhcccccCcEEEccCCccC
Q 007984          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN  197 (582)
Q Consensus       147 ~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~  197 (582)
                      |.+..+ ..+..+++|++|++++|+++++.. ..+..+++|+.|++++|.+.
T Consensus       103 N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         103 NQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            777665 346666677777777776665543 33566666666666666553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8e-11  Score=96.98  Aligned_cols=78  Identities=27%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             hhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccchHHH
Q 007984          493 ILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAV  571 (582)
Q Consensus       493 ~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  571 (582)
                      +.++++|+.|++++|+|+.++ ..|.++++|++|+|++|+|+++|..++.. .+|+.|+|++|++.      ++.....+
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~------C~C~~~~l  124 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLH------CSCALRWL  124 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC------CCGGGHHH
T ss_pred             hccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCCCccc------CCchHHHH
Confidence            445567777777777777774 45788888888888888888888888776 57888888888875      23344444


Q ss_pred             HHHHHh
Q 007984          572 LKYLKD  577 (582)
Q Consensus       572 ~~~~~~  577 (582)
                      ..|++.
T Consensus       125 ~~~~~~  130 (156)
T d2ifga3         125 QRWEEE  130 (156)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            445443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-10  Score=94.54  Aligned_cols=104  Identities=21%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             ccEEEecCCCCccCChhhhccCCccEEEcCCC-cCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (582)
Q Consensus       359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (582)
                      ...+++.+.++..+|..+...+++++|+++++ .++.++. .|..+++|+.|++++|+++.+...+|..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            35677777777777777777788888888765 4777765 577888888888888888888777788888888888888


Q ss_pred             CCCccCCCccccCCCCCcEEeCCCCcC
Q 007984          437 NPLRQVPSDGFKDIPMLQILDLSYNIA  463 (582)
Q Consensus       437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l  463 (582)
                      |+++.++...|... +|+.|+|++|.+
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             CCCcccChhhhccc-cccccccCCCcc
Confidence            88888877766554 588888888865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.6e-07  Score=77.26  Aligned_cols=69  Identities=26%  Similarity=0.258  Sum_probs=56.4

Q ss_pred             hhhhccCCCCEEecCCCcCCccc---hhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcc
Q 007984          491 TDILRLQQLRILDLSQNSLQSIP---EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI  559 (582)
Q Consensus       491 ~~~~~~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~  559 (582)
                      .....++.|++|++++|+++.++   ..+..+++|+.|++++|+++++++..+....+|+.++++||++...
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            34467899999999999998763   4477899999999999999988774443346899999999998754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=8.1e-07  Score=73.40  Aligned_cols=104  Identities=16%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             ccCccEEEcCCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCc-----cCC
Q 007984           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (582)
Q Consensus        44 ~~~l~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~  107 (582)
                      .++|++|+|+++ .++     .+...+...++|++|+|++|.++     .+...+...+.|++|++++|.+.     .+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666653 333     22344555666666666666655     22334555666666666666655     123


Q ss_pred             hhhhccCCccEEEccCCcCCcC--------CcccccCCCCCeEEcCCC
Q 007984          108 DEIGSATALVKFDCSSNQLKEL--------PSSLGRCLNLSDFKASNN  147 (582)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~~~~l--------~~~~~~~~~L~~L~l~~~  147 (582)
                      ..+...+.|++|+++++.+..+        ...+...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3445556666666666544322        233455667777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.15  E-value=1.7e-06  Score=71.36  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=61.6

Q ss_pred             cCCCCCcEEEcCCC-CCc-----ccchhhhCCCCCcEEecCCCcCc-----cCChhhhccCCccEEEccCCcCC-----c
Q 007984           65 RNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK-----E  128 (582)
Q Consensus        65 ~~~~~L~~L~L~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~  128 (582)
                      .+.+.|++|+|+++ .+.     .+..++...++|++|++++|.+.     .+...+...+.|++|++++|.+.     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34567777777654 344     12335556666777777776665     22334455666777777777665     2


Q ss_pred             CCcccccCCCCCeEEcCCCcCCC--------CccccccCCCCcEEEccCC
Q 007984          129 LPSSLGRCLNLSDFKASNNCITS--------LPEDLADCSKMSKLDVEGN  170 (582)
Q Consensus       129 l~~~~~~~~~L~~L~l~~~~~~~--------i~~~l~~~~~L~~L~l~~~  170 (582)
                      +...+...++|++|+++++.+..        +.+.+...+.|++|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22345566677777776664432        3344555667777766554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.2e-06  Score=71.90  Aligned_cols=80  Identities=29%  Similarity=0.260  Sum_probs=49.9

Q ss_pred             ccCCccEEEcCCCcCCcCC---ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCc-------cc
Q 007984          378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-------GF  447 (582)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~---~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-------~~  447 (582)
                      .+++|++|++++|.+++++   ..+..+++|+.|++++|.++++....+....+|+.|++++|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3567777777777776653   2345667777777777777776554444455677777777776643321       14


Q ss_pred             cCCCCCcEEe
Q 007984          448 KDIPMLQILD  457 (582)
Q Consensus       448 ~~~~~L~~L~  457 (582)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5566666664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.83  E-value=9.6e-06  Score=66.73  Aligned_cols=105  Identities=23%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             ccCccEEEcCCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCc-----cCC
Q 007984           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (582)
Q Consensus        44 ~~~l~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~  107 (582)
                      .+.|++|++++. .++     .+..++..+++|++|++++|.++     .+...+...+.++.+++++|.+.     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            467777777763 344     23345667777777777777766     23335566677777777777665     233


Q ss_pred             hhhhccCCccEEEcc--CCcCC-----cCCcccccCCCCCeEEcCCCc
Q 007984          108 DEIGSATALVKFDCS--SNQLK-----ELPSSLGRCLNLSDFKASNNC  148 (582)
Q Consensus       108 ~~~~~~~~L~~L~l~--~~~~~-----~l~~~~~~~~~L~~L~l~~~~  148 (582)
                      ..+...++|+.++++  ++.+.     .+...+...++|++|++..+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            455666777765554  34443     233455677788888776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=1.4e-05  Score=65.70  Aligned_cols=110  Identities=13%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             hhcCCCCCcEEEcCC-CCCc-----ccchhhhCCCCCcEEecCCCcCc-----cCChhhhccCCccEEEccCCcCC----
Q 007984           63 DLRNLPLLTVLNVSH-NKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK----  127 (582)
Q Consensus        63 ~~~~~~~L~~L~L~~-~~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~----  127 (582)
                      ...+.+.|++|++++ +.++     .+..++..+++|++|++++|.+.     .+...+...++++.++++++.+.    
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            445678888888887 3455     23446677888888888888776     23445566788888888888765    


Q ss_pred             -cCCcccccCCCCCeEEcC--CCcCC-----CCccccccCCCCcEEEccCCcc
Q 007984          128 -ELPSSLGRCLNLSDFKAS--NNCIT-----SLPEDLADCSKMSKLDVEGNKL  172 (582)
Q Consensus       128 -~l~~~~~~~~~L~~L~l~--~~~~~-----~i~~~l~~~~~L~~L~l~~~~i  172 (582)
                       .+...+...++|+.+++.  ++.+.     .+.+.+..+++|++|++..+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             333566677888876554  44554     3555677788888888876543