Citrus Sinensis ID: 008027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580
MGSIVPFQDLNLMPSPSTAASTAAAATLPLLTPKIEPKTEPFDEPVPTHQLERGQNTPESLLSESAPGFFSNSENTPESQPPDRDNVYSEFYRISELFRTAFAKRLRKYGDVDVLDPDSRAIVTVTHQDAQLSNAVVPRTKPMKRSGELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKRRGIGQGRRARGDLTASSVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQMKIR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccEEccccccccccEEccHHHEEHHcccccccccccccccccccccccEEEEEEEccccccccccccEEEEEcccccccccccccccccccccHHHHHHHcccccEEEEEcccccccccccEEEEccEEEEEEEEEEccccccEEEEEEHHHHccccccccHHHHHccccccccccccccccEEcccccccccccEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEccccccccccccccccccccEEEEEEEEEccccEEEEcccccccccEEEEEEEEEEcHHHHHHHcccccEEcccccccccccccccccccccc
cccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccEEccccccccccccEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccEEcccccEEccccccccccEHHHHEEEEEEcccccccccccEEccccccccccEEEEEEEccccccccccccEEEEEccccccccccccHHHHHHcHHHHHHHHHHccccEEEEEEEcccccccccEEEEccEEEEEHHHHHccccccEEEEEEEEEccccccccHHHHHHHHcccccccccccccEEHHHHHcccccccEEEEEcccccccccccccEEEEEcccccccccccccccccccccccccccHEccccccccccccEEEccccEEEccccccccccccccccHHHcccccEEEEEcccccEEEEEcccEccccEEEEcccEEEEHHHHHHHHccccEEcccccccccccccccccEEEEc
mgsivpfqdlnlmpspstaaSTAAAatlplltpkiepktepfdepvpthqlergqntpesllsesapgffsnsentpesqppdrdnvysEFYRISELFRTAFAKRLRKygdvdvldpdsraIVTVTHqdaqlsnavvprtkpmkrsgelvrvtdlsaederYFRDVVRRTRMLYDSLRVFAVYEEEKrrgigqgrrargdltasSVMKERQLWLnrdkrivgsipgvqigDVFFFRMELLVVGLhghsqagidylpgsqsangepiatsiivsggyeddedagdvliytghggqdklsRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFryqgsvsskvyvydglykihdcwfdvgksgfgvyKYKLLRIEGQPEMGSAILRFADSlrtkplsvrpkgylsldisgkkenvpvllfndidgdyeplYYEYLVRtvfppfvftqgsngagcdcvsgctdrcfcavknggefaydhngyllrgkpvifecgafcqcpptcrnrvsqrgLRNRLEVFrsretgwgvrslDLIHAGAFICEYAGVVLTMEQAQIFsmngdsliypnrfsarwgewgdlsqmkir
MGSIVPFQDLNLMPSPSTAASTAAAATLPLLTPKIEPKTEPFDEPVPTHQLERGQNTPESLLSESAPGFfsnsentpesqppdrdnVYSEFYRISELFRTAFAKRLRKYGDVDVLDPDSRAIVtvthqdaqlsnavvprtkpmkrsgelvrvtdlsaederyfrdvvrrtrmlydslrvfavyeeekrrgigqgrrargdltassvMKERQLwlnrdkrivgsipGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADslrtkplsvrpkgylsldisgkkenvPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPptcrnrvsqrglrnrlevfrsretgwgvrSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRfsarwgewgdlsqmkir
MGSIVPFQDLNLMpspstaastaaaatlplltpKIEPKTEPFDEPVPTHQLERGQNTPESLLSESAPGFFSNSENTPESQPPDRDNVYSEFYRISELFRTAFAKRLRKYGDVDVLDPDSRAIVTVTHQDAQLSNAVVPRTKPMKRSGELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKrrgigqgrrargDLTASSVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQMKIR
**************************************************************************************VYSEFYRISELFRTAFAKRLRKYGDVDVLDPDSRAIVTVTHQDA******************LVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEE*******************VMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPG*******PIATSIIVSGGYEDDEDAGDVLIYTGHGG***************GNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGD*******
**SIVPFQDLNLM******************TPKIE***********************************************************************************************************************************RRTRMLYDSLRVFAV**********************SVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTG********************LAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQM***
MGSIVPFQDLNLMPSPSTAASTAAAATLPLLTPKIEPKTEPFD****************SLLSESAPGF***************DNVYSEFYRISELFRTAFAKRLRKYGDVDVLDPDSRAIVTVTHQDAQLSNAVVPRTKPMKRSGELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKRRGIGQGRRARGDLTASSVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQMKIR
*********L*L******************L*PKIEPKT************************************************************************************************************************ERYFRDVVRRTRMLYDSLRVFAVYEEEKR******RRARGDLTASSVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQMKIR
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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
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MGSIVPFQDLNLMPSPSTAASTAAAATLPLLTPKIEPKTEPFDEPVPTHQLERGQNTPESLLSESAPGFFSNSENTPESQPPDRDNVYSEFYRISELFRTAFAKRLRKYGDVDVLDPDSRAIVTVTHQDAQLSNAVVPRTKPMKRSGELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKRRGIGQGRRARGDLTASSVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSARWGEWGDLSQMKIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query580 2.2.26 [Sep-21-2011]
Q9T0G7650 Probable histone-lysine N yes no 0.917 0.818 0.610 0.0
O22781651 Histone-lysine N-methyltr no no 0.943 0.840 0.564 0.0
Q93YF5704 Histone-lysine N-methyltr N/A no 0.894 0.737 0.363 9e-81
Q9FF80 670 Histone-lysine N-methyltr no no 0.722 0.625 0.404 5e-80
Q9C5P4 669 Histone-lysine N-methyltr no no 0.546 0.473 0.427 9e-73
O82175794 Histone-lysine N-methyltr no no 0.643 0.469 0.395 2e-72
Q8VZ17 790 Histone-lysine N-methyltr no no 0.622 0.456 0.386 4e-69
Q8GZB6 624 Histone-lysine N-methyltr no no 0.618 0.575 0.398 3e-65
Q9C5P0 755 Histone-lysine N-methyltr no no 0.681 0.523 0.345 8e-59
Q9C5P1 693 Histone-lysine N-methyltr no no 0.655 0.548 0.339 1e-58
>sp|Q9T0G7|SUVH9_ARATH Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1 Back     alignment and function desciption
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/562 (61%), Positives = 423/562 (75%), Gaps = 30/562 (5%)

Query: 32  TPKIEPKTEPFDEPVPTHQLERGQNTPESLLSESAPGFFSNSENTPESQPPDRDNVYSEF 91
           +P + PK EP  E       +     P++L+S +   F   +E T         +  S++
Sbjct: 15  SPSLIPKLEPVTESTQNLAFQLPNTNPQALISSAVSDF---NEAT---------DFSSDY 62

Query: 92  YRISELFRTAFAKRLRKYGDVDVLDPDSRAIVTV-----------THQDAQLSNAVVPRT 140
             ++E  R+AFA+RL+++ DV VLD  + AIV V           +  D+  S A   R 
Sbjct: 63  NTVAESARSAFAQRLQRHDDVAVLDSLTGAIVPVEENPEPEPNPYSTSDSSPSVAT-QRP 121

Query: 141 KPMKRSGELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKRRGIGQGRRARGD 200
           +P  RS ELVR+TD+  E ER FR+ VR+TRM+YDSLR+F + EE KR G+G GRRAR D
Sbjct: 122 RPQPRSSELVRITDVGPESERQFREHVRKTRMIYDSLRMFLMMEEAKRNGVG-GRRARAD 180

Query: 201 LTAS---SVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPG 257
             A    S+M++  LW+NRDKRIVGSIPGVQ+GD+FFFR EL V+GLHGH Q+GID+L G
Sbjct: 181 GKAGKAGSMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTG 240

Query: 258 SQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSM 317
           S S+NGEPIATS+IVSGGYEDD+D GDV++YTG GGQD+L RQ EHQ+LEGGNLAMERSM
Sbjct: 241 SLSSNGEPIATSVIVSGGYEDDDDQGDVIMYTGQGGQDRLGRQAEHQRLEGGNLAMERSM 300

Query: 318 HYGIEVRVIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMG 377
           +YGIEVRVIRG +Y+  VSS+VYVYDGL++I D WFDVGKSGFGV+KY+L RIEGQ EMG
Sbjct: 301 YYGIEVRVIRGLKYENEVSSRVYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAEMG 360

Query: 378 SAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFP 437
           S++L+FA +L+T PLSVRP+GY++ DIS  KENVPV LFNDID D EPLYYEYL +T FP
Sbjct: 361 SSVLKFARTLKTNPLSVRPRGYINFDISNGKENVPVYLFNDIDSDQEPLYYEYLAQTSFP 420

Query: 438 PFVFTQGS-NGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPP 496
           P +F Q S N +GCDCV+GC   C C  KN GE AYD+NG L+R KP+I ECG+ CQCPP
Sbjct: 421 PGLFVQQSGNASGCDCVNGCGSGCLCEAKNSGEIAYDYNGTLIRQKPLIHECGSACQCPP 480

Query: 497 TCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGD 556
           +CRNRV+Q+GLRNRLEVFRS ETGWGVRSLD++HAGAFICEYAGV LT EQA I +MNGD
Sbjct: 481 SCRNRVTQKGLRNRLEVFRSLETGWGVRSLDVLHAGAFICEYAGVALTREQANILTMNGD 540

Query: 557 SLIYPNRF-SARWGEWGDLSQM 577
           +L+YP RF SARW +WGDLSQ+
Sbjct: 541 TLVYPARFSSARWEDWGDLSQV 562
Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|O22781|SUVH2_ARATH Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1 Back     alignment and function description
>sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2 Back     alignment and function description
>sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2 Back     alignment and function description
>sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5P0|SUVH8_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 OS=Arabidopsis thaliana GN=SUVH8 PE=3 SV=1 Back     alignment and function description
>sp|Q9C5P1|SUVH7_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query580
449432488 695 PREDICTED: probable histone-lysine N-met 0.989 0.825 0.696 0.0
225433302672 PREDICTED: histone-lysine N-methyltransf 0.975 0.842 0.700 0.0
147859819653 hypothetical protein VITISV_004293 [Viti 0.943 0.837 0.677 0.0
224110658519 SET domain-containing protein [Populus t 0.746 0.834 0.817 0.0
297790484650 hypothetical protein ARALYDRAFT_332974 [ 0.918 0.82 0.625 0.0
15236295650 putative histone-lysine N-methyltransfer 0.917 0.818 0.610 0.0
356523366 709 PREDICTED: probable histone-lysine N-met 0.936 0.765 0.574 0.0
356576995 716 PREDICTED: probable histone-lysine N-met 0.920 0.745 0.572 0.0
297823125654 hypothetical protein ARALYDRAFT_902401 [ 0.946 0.839 0.570 0.0
15225829651 histone methyltransferase [Arabidopsis t 0.943 0.840 0.564 0.0
>gi|449432488|ref|XP_004134031.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform 1 [Cucumis sativus] gi|449432490|ref|XP_004134032.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform 2 [Cucumis sativus] gi|449487488|ref|XP_004157651.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform 1 [Cucumis sativus] gi|449487490|ref|XP_004157652.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/610 (69%), Positives = 489/610 (80%), Gaps = 36/610 (5%)

Query: 1   MGSIVPFQDLNLMPSPSTAASTAAAA-----------------TLPLLTPKIEPKTEPFD 43
           M S +PFQDLNL+P PS+ A   AA                  T  LLTPK+EPK EPFD
Sbjct: 1   MDSPIPFQDLNLLPDPSSTAVMTAATSPKTATGINSSFNKFVDTGKLLTPKLEPKLEPFD 60

Query: 44  EPVPTHQLERGQNTPESLLSESAPGFFSNSE--NTP---ESQPP---------DRDNVYS 89
           +   T + ++ Q+  +  LS  +  FFSN++   TP   ++  P         D+DNVYS
Sbjct: 61  DLFETRESQQPQSVQQPFLSTPSSNFFSNTDFSQTPFSDQNHTPLSQSSSISSDKDNVYS 120

Query: 90  EFYRISELFRTAFAKRLRKYGDVDV--LDPDSRAIVTVTHQDAQLSNAVVPRTKPMKRSG 147
           EFYRIS+LFR+AF K L+ YGD DV  +DPD++AIV V  ++ Q+S  VV + +  KRS 
Sbjct: 121 EFYRISQLFRSAFGKGLQSYGDADVEVVDPDAQAIVPVPEEN-QISTVVVSKRRYDKRSS 179

Query: 148 ELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKRRGIGQGRRARGDLTASSVM 207
           ELVRVTDL  ED+RYFRDVVRRTRM++DSLRV +  EEEK  G+   RR RGDL ASS+M
Sbjct: 180 ELVRVTDLGVEDQRYFRDVVRRTRMIFDSLRVLSTAEEEKSPGLM--RRLRGDLRASSLM 237

Query: 208 KERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIA 267
           +ER LWLNRDKRIVGSIPGV IGD+FFFRMEL VVGLHG +QAGIDY+P SQS+NGEPIA
Sbjct: 238 RERGLWLNRDKRIVGSIPGVHIGDLFFFRMELCVVGLHGQAQAGIDYVPASQSSNGEPIA 297

Query: 268 TSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIR 327
           TSIIVSGGYEDDEDAGD++IYTGHGGQDK S+QC HQKLEGGNLA+ERSMHYGIEVRVIR
Sbjct: 298 TSIIVSGGYEDDEDAGDMIIYTGHGGQDKFSKQCMHQKLEGGNLALERSMHYGIEVRVIR 357

Query: 328 GFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSL 387
           G +Y GSV+SK+YVYDGLY+I DCWFDVGKSGFGVYKYKLLRI+GQ EMGS+IL+FA++L
Sbjct: 358 GMKYAGSVASKIYVYDGLYRILDCWFDVGKSGFGVYKYKLLRIDGQAEMGSSILKFAENL 417

Query: 388 RTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNG 447
           RTKPLS+RP GYLSLDIS KKE VPVLLFNDID D EPLYYEYLVRTVFPPF F Q  +G
Sbjct: 418 RTKPLSLRPSGYLSLDISMKKEAVPVLLFNDIDNDQEPLYYEYLVRTVFPPFAFHQSGSG 477

Query: 448 AGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGL 507
            GC CV+ C   CFCA+KNGGEF YD NG+L+RGKP+IFECG FCQCPP CRNRVSQ+GL
Sbjct: 478 TGCSCVTSCVHDCFCAMKNGGEFGYDQNGFLVRGKPIIFECGPFCQCPPQCRNRVSQKGL 537

Query: 508 RNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNRFSAR 567
           ++RLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLT EQAQ+FSMNGD+LIYPNRFS R
Sbjct: 538 KHRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTREQAQVFSMNGDTLIYPNRFSDR 597

Query: 568 WGEWGDLSQM 577
           W EWGDLSQ+
Sbjct: 598 WAEWGDLSQI 607

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433302|ref|XP_002282386.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859819|emb|CAN81444.1| hypothetical protein VITISV_004293 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110658|ref|XP_002315593.1| SET domain-containing protein [Populus trichocarpa] gi|222864633|gb|EEF01764.1| SET domain-containing protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297790484|ref|XP_002863127.1| hypothetical protein ARALYDRAFT_332974 [Arabidopsis lyrata subsp. lyrata] gi|297308961|gb|EFH39386.1| hypothetical protein ARALYDRAFT_332974 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15236295|ref|NP_193082.1| putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana] gi|79325081|ref|NP_001031625.1| putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana] gi|30580529|sp|Q9T0G7.1|SUVH9_ARATH RecName: Full=Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9; AltName: Full=Histone H3-K9 methyltransferase 9; Short=H3-K9-HMTase 9; AltName: Full=Protein SET DOMAIN GROUP 22; AltName: Full=Suppressor of variegation 3-9 homolog protein 9; Short=Su(var)3-9 homolog protein 9 gi|13517759|gb|AAK28974.1|AF344452_1 SUVH9 [Arabidopsis thaliana] gi|4678372|emb|CAB41104.1| putative protein [Arabidopsis thaliana] gi|7268049|emb|CAB78388.1| putative protein [Arabidopsis thaliana] gi|222424024|dbj|BAH19973.1| AT4G13460 [Arabidopsis thaliana] gi|332657882|gb|AEE83282.1| putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana] gi|332657883|gb|AEE83283.1| putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356523366|ref|XP_003530311.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Glycine max] Back     alignment and taxonomy information
>gi|356576995|ref|XP_003556615.1| PREDICTED: probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9-like [Glycine max] Back     alignment and taxonomy information
>gi|297823125|ref|XP_002879445.1| hypothetical protein ARALYDRAFT_902401 [Arabidopsis lyrata subsp. lyrata] gi|297325284|gb|EFH55704.1| hypothetical protein ARALYDRAFT_902401 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15225829|ref|NP_180887.1| histone methyltransferase [Arabidopsis thaliana] gi|30580518|sp|O22781.1|SUVH2_ARATH RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2; AltName: Full=Cytosine-HMTase 2; AltName: Full=H3-K27-HMTase 2; AltName: Full=H4-K20-HMTase 2; AltName: Full=Histone H3-K9 methyltransferase 2; Short=H3-K9-HMTase 2; AltName: Full=Protein SET DOMAIN GROUP 3; AltName: Full=Suppressor of variegation 3-9 homolog protein 2; Short=Su(var)3-9 homolog protein 2 gi|13517745|gb|AAK28967.1|AF344445_1 SUVH2 [Arabidopsis thaliana] gi|2459412|gb|AAB80647.1| similar to mammalian MHC III region protein G9a [Arabidopsis thaliana] gi|330253716|gb|AEC08810.1| histone methyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query580
TAIR|locus:2140827650 SUVH9 "SU(VAR)3-9 homolog 9" [ 0.912 0.813 0.6 2e-175
TAIR|locus:2051083651 SUVH2 "SU(VAR)3-9 homolog 2" [ 0.943 0.840 0.548 1.6e-164
TAIR|locus:2175289 670 SUVH1 "SU(VAR)3-9 homolog 1" [ 0.727 0.629 0.402 6.3e-76
TAIR|locus:2032592 669 SUVH3 "SU(VAR)3-9 homolog 3" [ 0.570 0.494 0.420 2.4e-69
TAIR|locus:2063384794 SUVH5 "SU(VAR)3-9 homolog 5" [ 0.667 0.487 0.386 8e-69
TAIR|locus:2065988 790 SUVH6 "SU(VAR)3-9 homolog 6" [ 0.579 0.425 0.410 8.5e-65
TAIR|locus:2159133 624 SUVH4 "SU(VAR)3-9 homolog 4" [ 0.575 0.535 0.417 7.6e-64
TAIR|locus:2047266 755 SDG21 "SET domain group 21" [A 0.567 0.435 0.400 5.9e-57
TAIR|locus:2030953 693 SUVH7 "SU(VAR)3-9 homolog 7" [ 0.593 0.496 0.362 1.6e-56
TAIR|locus:2151997328 AT5G47150 [Arabidopsis thalian 0.287 0.509 0.440 2.4e-28
TAIR|locus:2140827 SUVH9 "SU(VAR)3-9 homolog 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
 Identities = 333/555 (60%), Positives = 410/555 (73%)

Query:    37 PKTEPFDEPVPTHQLERGQNTPESLLSESAPGFFSNSENTPESQPPDRDNVYSEFYRISE 96
             PK EP  E       +     P++L+S +   F   +E T  S         S++  ++E
Sbjct:    20 PKLEPVTESTQNLAFQLPNTNPQALISSAVSDF---NEATDFS---------SDYNTVAE 67

Query:    97 LFRTAFAKRLRKYGDVDVLDPDSRAIVTVT---------HQDAQLSNAVVP-RTKPMKRS 146
               R+AFA+RL+++ DV VLD  + AIV V          +  +  S +V   R +P  RS
Sbjct:    68 SARSAFAQRLQRHDDVAVLDSLTGAIVPVEENPEPEPNPYSTSDSSPSVATQRPRPQPRS 127

Query:   147 GELVRVTDLSAEDERYFRDVVRRTRMLYDSLRVFAVYEEEKXXXXXXXXXXXXDLT--AS 204
              ELVR+TD+  E ER FR+ VR+TRM+YDSLR+F + EE K                 A 
Sbjct:   128 SELVRITDVGPESERQFREHVRKTRMIYDSLRMFLMMEEAKRNGVGGRRARADGKAGKAG 187

Query:   205 SVMKERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGE 264
             S+M++  LW+NRDKRIVGSIPGVQ+GD+FFFR EL V+GLHGH Q+GID+L GS S+NGE
Sbjct:   188 SMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGE 247

Query:   265 PIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVR 324
             PIATS+IVSGGYEDD+D GDV++YTG GGQD+L RQ EHQ+LEGGNLAMERSM+YGIEVR
Sbjct:   248 PIATSVIVSGGYEDDDDQGDVIMYTGQGGQDRLGRQAEHQRLEGGNLAMERSMYYGIEVR 307

Query:   325 VIRGFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFA 384
             VIRG +Y+  VSS+VYVYDGL++I D WFDVGKSGFGV+KY+L RIEGQ EMGS++L+FA
Sbjct:   308 VIRGLKYENEVSSRVYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAEMGSSVLKFA 367

Query:   385 DSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQG 444
              +L+T PLSVRP+GY++ DIS  KENVPV LFNDID D EPLYYEYL +T FPP +F Q 
Sbjct:   368 RTLKTNPLSVRPRGYINFDISNGKENVPVYLFNDIDSDQEPLYYEYLAQTSFPPGLFVQQ 427

Query:   445 S-NGAGCDCVSGCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVS 503
             S N +GCDCV+GC   C C  KN GE AYD+NG L+R KP+I ECG+ CQCPP+CRNRV+
Sbjct:   428 SGNASGCDCVNGCGSGCLCEAKNSGEIAYDYNGTLIRQKPLIHECGSACQCPPSCRNRVT 487

Query:   504 QRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGDSLIYPNR 563
             Q+GLRNRLEVFRS ETGWGVRSLD++HAGAFICEYAGV LT EQA I +MNGD+L+YP R
Sbjct:   488 QKGLRNRLEVFRSLETGWGVRSLDVLHAGAFICEYAGVALTREQANILTMNGDTLVYPAR 547

Query:   564 FS-ARWGEWGDLSQM 577
             FS ARW +WGDLSQ+
Sbjct:   548 FSSARWEDWGDLSQV 562
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0034968 "histone lysine methylation" evidence=IEA
GO:0042393 "histone binding" evidence=IEA
GO:0009294 "DNA mediated transformation" evidence=IMP
TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047266 SDG21 "SET domain group 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030953 SUVH7 "SU(VAR)3-9 homolog 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151997 AT5G47150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9T0G7SUVH9_ARATH2, ., 1, ., 1, ., 4, 30.61030.91720.8184yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.914
3rd Layer2.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query580
smart00466155 smart00466, SRA, SET and RING finger associated do 3e-79
pfam02182154 pfam02182, YDG_SRA, YDG/SRA domain 1e-77
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 3e-27
smart0046898 smart00468, PreSET, N-terminal to some SET domains 6e-25
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-09
pfam00856113 pfam00856, SET, SET domain 9e-04
>gnl|CDD|197742 smart00466, SRA, SET and RING finger associated domain Back     alignment and domain information 
 Score =  246 bits (629), Expect = 3e-79
 Identities = 94/158 (59%), Positives = 115/158 (72%), Gaps = 4/158 (2%)

Query: 217 DKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGY 276
            KRI G +PGV++GD+FF+R+EL +VGLH  +QAGID L   +S  GEP ATS++ SGGY
Sbjct: 1   MKRIFGPVPGVEVGDIFFYRVELCLVGLHRPTQAGIDGL---ESDEGEPGATSVVSSGGY 57

Query: 277 EDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFR-YQGSV 335
           EDD D GDVLIYTG GG+D    Q E QKLE GNLA+E S   GI VRV+RG + Y    
Sbjct: 58  EDDTDDGDVLIYTGQGGRDMTHGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYA 117

Query: 336 SSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQ 373
             K Y+YDGLY+I D W +VGKSGF V+K+KL+RI GQ
Sbjct: 118 PGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Length = 155
>gnl|CDD|216920 pfam02182, YDG_SRA, YDG/SRA domain Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 580
smart00466155 SRA SET and RING finger associated domain. Domain 100.0
PF02182155 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.85
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 99.84
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.83
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 99.83
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.6
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 99.03
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 98.64
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 98.48
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.27
smart0057051 AWS associated with SET domains. subdomain of PRES 96.86
KOG1085392 consensus Predicted methyltransferase (contains a 96.55
COG2940480 Proteins containing SET domain [General function p 96.32
COG3440301 Predicted restriction endonuclease [Defense mechan 93.79
PF00856 162 SET: SET domain; InterPro: IPR001214 The SET domai 88.18
>smart00466 SRA SET and RING finger associated domain Back     alignment and domain information 
Probab=100.00  E-value=1.8e-59  Score=441.71  Aligned_cols=153  Identities=60%  Similarity=1.000  Sum_probs=145.4

Q ss_pred             CCeeccCCCccCCceechHHHHHHhccCCCCCCCcccccCCCCCCCCCcEEEEEEcCCCCCCCCCCCeEEEEcCCCCCCC
Q 008027          218 KRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKL  297 (580)
Q Consensus       218 kri~G~vpGV~vGd~F~~R~el~~~GlH~~~~aGId~~~~~~~~~g~~~A~SIV~SGgY~dD~D~Gd~liYtG~GG~~~~  297 (580)
                      +++||+||||+|||+|++|+||+++|||+++|+|||+++.+   +++++|+|||+||||+||+|+||+|+|||+||++..
T Consensus         2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~~   78 (155)
T smart00466        2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDMT   78 (155)
T ss_pred             CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccCC
Confidence            46789999999999999999999999999999999998643   688999999999999999999999999999999988


Q ss_pred             CccccCCccchhhHHHHHhhhcCCeEEEEecccc-CCCcccceeEecCeEEEEEEEEecCCCceeEEEEeEEeecCC
Q 008027          298 SRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRY-QGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQ  373 (580)
Q Consensus       298 ~~q~~DQkle~gNlAL~~S~~~~~PVRVIRg~k~-~~~~p~~gYrYDGLY~V~~~w~e~gk~G~~V~kFkL~R~~gQ  373 (580)
                      ++|..||+|++||+||++||++++|||||||++. ....|.++|||||||+|+++|.++|++||.||||+|+|+|||
T Consensus        79 ~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ  155 (155)
T smart00466       79 HGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ  155 (155)
T ss_pred             CCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence            8999999999999999999999999999999994 445699999999999999999999999999999999999998

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>COG3440 Predicted restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query580
3q0c_X167 Crystal Structure Of Suvh5 Sra-Fully Methylated Cg 8e-35
3q0b_X167 Crystal Structure Of Suvh5 Sra- Fully Methylated Cg 1e-33
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 3e-20
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 3e-20
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 3e-20
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 7e-20
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-19
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 1e-19
3f8j_B212 Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C 8e-18
2zo0_B212 Mouse Np95 Sra Domain Dna Specific Complex 1 Length 8e-18
2zkd_A210 Crystal Structure Of The Sra Domain Of Mouse Np95 I 2e-17
2pb7_A239 Crystal Structure Of The Sra Domain Of The Human Uh 2e-16
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 2e-16
3clz_A212 The Set And Ring Associated (Sra) Domain Of Uhrf1 B 3e-16
3dwh_A208 Structural And Functional Analysis Of Sra Domain Le 4e-16
3bi7_A212 Crystal Structure Of The Sra Domain Of E3 Ubiquitin 8e-16
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 1e-14
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 5e-13
3oln_A231 Crystal Structure Of The Sra Domain Of E3 Ubiquitin 4e-11
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 7e-09
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 1e-04
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna Complex In Space Group P6122 Length = 167 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (365), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 79/164 (48%), Positives = 110/164 (67%), Gaps = 9/164 (5%)
Query: 219 RIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYED 278
           +I+G++PGV++GD F +RMEL ++G+H  SQ+GIDY+   +   GE +ATSI+ SGGY D
Sbjct: 1   QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYND 57
Query: 279 DEDAGDVLIYTGHGG---QDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFR---YQ 332
             D  DVLIYTG GG   + K +   + Q+L  GNLA++ S++    VRVIRG +    Q
Sbjct: 58  VLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQ 117
Query: 333 GSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
            SV +K YVYDGLY + + W + G  G  V+K+KL RI GQPE+
Sbjct: 118 SSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPEL 161
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna Complex In Space Group P42212 Length = 167 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg, Crystal Structure In Space Group C222(1) Length = 212 Back     alignment and structure
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1 Length = 212 Back     alignment and structure
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In Complex With Hemi-Methylated Cpg Dna Length = 210 Back     alignment and structure
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1 Protein Length = 239 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To Methylated Dna Length = 212 Back     alignment and structure
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain Length = 208 Back     alignment and structure
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf1 Length = 212 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query580
2pb7_A239 E3 ubiquitin-protein ligase UHRF1; beta barrel, NE 4e-60
3fde_A212 E3 ubiquitin-protein ligase UHRF1; SRA domain, bas 1e-59
3oln_A231 E3 ubiquitin-protein ligase UHRF2; DNA-binding, me 3e-58
3q0b_X167 Histone-lysine N-methyltransferase, H3 lysine-9 S 2e-56
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 5e-52
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 5e-51
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 5e-43
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 3e-42
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 2e-41
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 7e-29
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 7e-27
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 1e-24
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 1e-13
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 5e-06
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 4e-04
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Length = 239 Back     alignment and structure
 Score =  198 bits (505), Expect = 4e-60
 Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 34/242 (14%)

Query: 208 KERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIA 267
             ++  +       G IPG+ +G ++ FR+++   G+H    AGI              A
Sbjct: 2   HMKECTIVPSNHY-GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHG-------RSNDGA 53

Query: 268 TSIIVSGGYEDDEDAGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAME-------- 314
            S++++GGYEDD D G+   YTG GG+D     + + Q   QKL   N A+         
Sbjct: 54  YSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPIN 113

Query: 315 -------RSMHYGIEVRVIRGFRYQ---GSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYK 364
                  +    G  VRV+R  +         ++   YDG+YK+   W + GKSGF V++
Sbjct: 114 DQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWR 173

Query: 365 YKLLRIEGQPEMGSAILRFADSLRTKPLSVR-PKGYLSLDISGKKENVPVLLFNDIDGDY 423
           Y L R + +P   +      D ++   L+++ P+GYL    + ++E        +   + 
Sbjct: 174 YLLRRDDDEPGPWTK--EGKDRIKKLGLTMQYPEGYLEALANREREKENSKREEEEQQEG 231

Query: 424 EP 425
             
Sbjct: 232 GF 233
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Length = 212 Back     alignment and structure
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} Length = 231 Back     alignment and structure
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Length = 167 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query580
3q0b_X167 Histone-lysine N-methyltransferase, H3 lysine-9 S 100.0
2pb7_A239 E3 ubiquitin-protein ligase UHRF1; beta barrel, NE 100.0
3fde_A212 E3 ubiquitin-protein ligase UHRF1; SRA domain, bas 100.0
3oln_A231 E3 ubiquitin-protein ligase UHRF2; DNA-binding, me 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 99.92
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 99.91
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 99.9
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 99.49
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.44
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.26
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.02
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.98
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.95
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 98.4
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 98.2
3db5_A151 PR domain zinc finger protein 4; methyltransferase 98.01
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 97.86
3dal_A196 PR domain zinc finger protein 1; methyltransferase 97.71
3ray_A237 PR domain-containing protein 11; structural genomi 96.29
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 95.64
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Back     alignment and structure
Probab=100.00  E-value=5.1e-60  Score=449.42  Aligned_cols=160  Identities=49%  Similarity=0.816  Sum_probs=141.9

Q ss_pred             CeeccCCCccCCceechHHHHHHhccCCCCCCCcccccCCCCCCCCCcEEEEEEcCCCCCCCCCCCeEEEEcCCCCCC--
Q 008027          219 RIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDK--  296 (580)
Q Consensus       219 ri~G~vpGV~vGd~F~~R~el~~~GlH~~~~aGId~~~~~~~~~g~~~A~SIV~SGgY~dD~D~Gd~liYtG~GG~~~--  296 (580)
                      ++|||||||+|||||++|+||+++|+|+++|+|||+++.   ..++++|+|||+||||+||+|+||+|+|||+||++.  
T Consensus         1 ~~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~---~~~~~gA~SIV~SggY~Dd~D~gd~l~YTG~GG~~~~~   77 (167)
T 3q0b_X            1 QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKD---DGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKK   77 (167)
T ss_dssp             CCCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEEC---SSSCEEEEEEEESSSTTCEECSSSEEEEECSCTTCC--
T ss_pred             CcccCCCCCcCccEecchHHHhHhCcCCCccCCeecccc---cCCCcceEEEEeCCCcccccCCCCEEEEECCCCCcccc
Confidence            468999999999999999999999999999999999852   236789999999999999999999999999999985  


Q ss_pred             -CCccccCCccchhhHHHHHhhhcCCeEEEEecccc---CCCcccceeEecCeEEEEEEEEecCCCceeEEEEeEEeecC
Q 008027          297 -LSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRY---QGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEG  372 (580)
Q Consensus       297 -~~~q~~DQkle~gNlAL~~S~~~~~PVRVIRg~k~---~~~~p~~gYrYDGLY~V~~~w~e~gk~G~~V~kFkL~R~~g  372 (580)
                       .++|..||+|++||+||++||++++|||||||++.   ..++|.++|||||||+|+++|.++|++|+.||||+|+|++|
T Consensus        78 ~~~~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~g  157 (167)
T 3q0b_X           78 KNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPG  157 (167)
T ss_dssp             ---CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC----------CCEEEEEEEEEEEEEEEECTTSCEEEEEEEEECTT
T ss_pred             ccccccccCccchhHHHHHHHHHcCCcEEEEEeecccccCCCCCCccEEECeEEEEeeeEEeeCCCCcEEEEEEEEEcCC
Confidence             37899999999999999999999999999999998   34569999999999999999999999999999999999999


Q ss_pred             CCCCcchhh
Q 008027          373 QPEMGSAIL  381 (580)
Q Consensus       373 Qp~l~s~~~  381 (580)
                      ||+|+++.|
T Consensus       158 Qp~l~~~~~  166 (167)
T 3q0b_X          158 QPELPWKEV  166 (167)
T ss_dssp             SCCCCC---
T ss_pred             CCCCChhhc
Confidence            999988764
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Back     alignment and structure
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Back     alignment and structure
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 580
d2zkda1209 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase 7e-62
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 5e-33
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 4e-30
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 6e-04
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 0.001
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209 Back     information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  201 bits (512), Expect = 7e-62
 Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 34/211 (16%)

Query: 208 KERQLWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIA 267
           +  +  +       G IPGV +G ++ FR+++   G+H    AGI              A
Sbjct: 7   RTTECTIVPANHF-GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHG-------RSNDGA 58

Query: 268 TSIIVSGGYEDDEDAGDVLIYTGHGGQDKL-----SRQCEHQKLEGGNLAMERS------ 316
            S++++GGYEDD D G+   YTG GG+D       + Q   QKL   N A+  +      
Sbjct: 59  YSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPIN 118

Query: 317 --------MHYGIEVRVIRGFR---YQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKY 365
                      G  VRV+R  +   +     ++   YDG+YK+   W + GKSGF V++Y
Sbjct: 119 EKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRY 178

Query: 366 KLLRIEGQPEMGSAILRFADSLRTKPLSVRP 396
            L R + +PE  +         RT+ L +  
Sbjct: 179 LLRRDDTEPEPWTRE----GKDRTRQLGLTM 205
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query580
d2zkda1209 E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.68
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 97.78
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-57  Score=439.53  Aligned_cols=160  Identities=36%  Similarity=0.580  Sum_probs=145.2

Q ss_pred             eeecCCCCeeccCCCccCCceechHHHHHHhccCCCCCCCcccccCCCCCCCCCcEEEEEEcCCCCCCCCCCCeEEEEcC
Q 008027          212 LWLNRDKRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGH  291 (580)
Q Consensus       212 ~~~n~~kri~G~vpGV~vGd~F~~R~el~~~GlH~~~~aGId~~~~~~~~~g~~~A~SIV~SGgY~dD~D~Gd~liYtG~  291 (580)
                      ..++..++ ||+||||+|||||++|+||+++|||+++|+||+++.       +.+|+|||+||||+||+|+||+|||||+
T Consensus        11 ~~~~p~~~-~G~vpGv~VGd~F~~R~el~~~GlH~~~~aGI~g~~-------~~GA~SIV~SGgYeDD~D~gd~liYTG~   82 (209)
T d2zkda1          11 CTIVPANH-FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRS-------NDGAYSLVLAGGYEDDVDNGNYFTYTGS   82 (209)
T ss_dssp             CCSSCTTC-CSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEET-------TTEEEEEEECSCSTTCEECSSEEEEECS
T ss_pred             EEeCCCCc-ccCCCCCCCCCEECCHHHHHHcCCCCCccCcEeecC-------CCceEEEEECCCccccccCCcEEEEECC
Confidence            44555666 799999999999999999999999999999999852       3469999999999999999999999999


Q ss_pred             CCCCCC-----CccccCCccchhhHHHHHh--------------hhcCCeEEEEeccccC---CCcccceeEecCeEEEE
Q 008027          292 GGQDKL-----SRQCEHQKLEGGNLAMERS--------------MHYGIEVRVIRGFRYQ---GSVSSKVYVYDGLYKIH  349 (580)
Q Consensus       292 GG~~~~-----~~q~~DQkle~gNlAL~~S--------------~~~~~PVRVIRg~k~~---~~~p~~gYrYDGLY~V~  349 (580)
                      ||++..     ..|..||+|++||+||++|              |++++|||||||++..   ...|.++|||||||+|+
T Consensus        83 GG~d~~~~k~~~~q~~DQkl~~gNlAL~~Sc~~~~n~~~~~~~~~~~g~PVRVIRg~k~~~~~~~~p~~gYrYDGLY~V~  162 (209)
T d2zkda1          83 GGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVV  162 (209)
T ss_dssp             CCBCCTTTCSCCCBCSCCCSSHHHHHHHHTSSSCCCTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEEEEEEE
T ss_pred             CCccccCCccccccccceeeccchHHHhhccccccccccchhhhhhcCCceEEEEeeccccCCCcCCCceEEeCcEEEEE
Confidence            999865     3489999999999999999              7799999999999852   34599999999999999


Q ss_pred             EEEEecCCCceeEEEEeEEeecCCCCCcch
Q 008027          350 DCWFDVGKSGFGVYKYKLLRIEGQPEMGSA  379 (580)
Q Consensus       350 ~~w~e~gk~G~~V~kFkL~R~~gQp~l~s~  379 (580)
                      ++|.++|++||.||||+|+|+||||+.++.
T Consensus       163 ~~w~e~gk~G~~V~rF~L~R~~gQp~p~~~  192 (209)
T d2zkda1         163 KYWPERGKSGFLVWRYLLRRDDTEPEPWTR  192 (209)
T ss_dssp             EEEEEECTTSSEEEEEEEEECCSSCCTTSH
T ss_pred             EEEEccCCCCcEEEEEEEEECCCCCCCccc
Confidence            999999999999999999999999997654
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure