Citrus Sinensis ID: 008041

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEcccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEEEcccccEEEccccEEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEcccEEEEEEcccccccccccccEEEEEcccccccccccccEEEEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEcccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEccccccEEEEEccccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEccccccccccccccccccccHHcccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHcccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAStettslygnrlerehlsvdYTCMKWLSvdrkkkrkLGSSLLVLGTGGGDVLALAVSAGQLkwrlsdchpggvsaisfathgsciysagadgmvceidpltgsllgkfrastkgiscmavsSDGKMLATAAGqlktfncsdhkkmqkfsghpgavrfmtfsdngkYVLSSAVGERYIALWRTdgvkkqsascvlamehpavfmdcrcidnggvddaGLYVLAISETGVCYIWYGQNIEELRNTKATKILsssedvnsksQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNsgedinlncsqdgvllpmsqsllkskrgryVQNRVTALDranaedavlplpkildsydkknrhqnlssdldevmTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSlgilsnkddllsnSALEatlfngidfetnipvKKMRATILSLSPTNACKLLEVLVDLWQsrsykgknILQWIYFILVNhghhllsqeslTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Flexible Loop (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIastettslygnrlerehlsvdYTCMKWlsvdrkkkrkLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSssedvnsksQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQsllkskrgrYVQNRVTaldranaedavlplpkildsydkknrhqnlssdldevmtDVVDSESQAKfmeikddkveveadSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Low Complexity Region (SEG)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDrkkkrklgssllvlgtgggdvlalavSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Disordered region (IsUnstruct)
*******DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR***********************AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK*KRGRYVQNRVTALDRANAEDAVLPLPKIL************************************************VCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFL*
Disordered Region (DISOPRED)
***SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL***********KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM**********************ANAEDAVLPL*****************************************************CM********************ALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Disordered Region (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL**************TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Disordered Region (DISPRO)
****NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKN*******DLDEV*****DSE*********************VCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	579	2.2.26 [Sep-21-2011]
Q15061	677	WD repeat-containing prot	yes	no	0.846	0.723	0.220	2e-20
Q6ZQL4	677	WD repeat-containing prot	yes	no	0.849	0.726	0.227	1e-19
Q8YV57	1683	Uncharacterized WD repeat	yes	no	0.374	0.128	0.249	2e-09
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.267	0.235	0.273	5e-09
Q9BVA0	655	Katanin p80 WD40 repeat-c	no	no	0.267	0.236	0.273	5e-09
Q5ZIU8	657	Katanin p80 WD40 repeat-c	no	no	0.297	0.261	0.270	2e-08
A0CH87	403	Lissencephaly-1 homolog 2	N/A	no	0.278	0.399	0.248	2e-07
Q8TC44	478	POC1 centriolar protein h	no	no	0.193	0.234	0.295	2e-07
Q4V7Y7	655	Katanin p80 WD40 repeat-c	N/A	no	0.302	0.267	0.270	3e-07
D3ZW91	477	POC1 centriolar protein h	no	no	0.376	0.457	0.236	6e-07

>sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 133/602 (22%), Positives = 241/602 (40%), Gaps = 112/602 (18%)

Query: 12  SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
           +FSP +  YFA+ S D  +++W+T   ++  E+   A               HLS   TC
Sbjct: 20  AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSA---------------HLSGTCTC 64

Query: 71  MKWLSV-------DRKKKRK---LGSS----LLVLGTGGGDVLALAVSAGQLKWRL-SDC 115
           + W           ++KKRK   +G S    LL LGT  G +L  +   G+L  +L S  
Sbjct: 65  LAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGG 124

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H   V+ I +     C+YS   D  + E +  T  +  K++     +S + +S DGKML 
Sbjct: 125 HDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLL 184

Query: 176 TAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGER 222
           +A   +K +     +  + F+GH   V  + F+               G Y LS AV +R
Sbjct: 185 SAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDR 244

Query: 223 YIALWRTDGV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281
            + +W+     K++SA     +    V++D    +N    +  + +  +   G  +++  
Sbjct: 245 LLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-- 299

Query: 282 QNIEELRNTKATKILSSSEDVN----SKSQKSATA--AIFAAKLQDIVKPASVHTFVAYG 335
              E + N    K L+S+  +      K +KS      I AA          +   + YG
Sbjct: 300 ---EHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCS----DKMSLLLVYG 352

Query: 336 LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAV 395
              +P+ +++ +NS E                  L++     +     TA+ +       
Sbjct: 353 SWFQPTIERVALNSREP--------------HMCLVRDISNCWAPKVETAITKV------ 392

Query: 396 LPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADS--QTVCM 453
                         R   ++S+   ++  +    +  K    + ++VE +  S    V +
Sbjct: 393 --------------RTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGNEVSI 438

Query: 454 EDRLRSLGILSN---KDDLLSNSALEATLFNGI---DFETNIPVKKMR------ATILSL 501
           E+RL ++ I ++   K+DL +NS     L  G+   DFE    V + R       T+L +
Sbjct: 439 EERLGAMDIDTHKKGKEDLQTNS-FPVLLTQGLESNDFEMLNKVLQTRNVNLIKKTVLRM 497

Query: 502 SPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKK 561
                  LL+ L    Q        ++QW+  +L  H  +L +   L P L +LY++ + 
Sbjct: 498 PLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMES 557

Query: 562 KL 563
           ++
Sbjct: 558 RV 559

Homo sapiens (taxid: 9606)

>sp|Q6ZQL4|WDR43_MOUSE WD repeat-containing protein 43 OS=Mus musculus GN=Wdr43 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 136/598 (22%), Positives = 240/598 (40%), Gaps = 106/598 (17%)

Query: 12  SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
           +FSP +  YFA+ S D ++++W+T   ++  E+   A               HLS   TC
Sbjct: 20  AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSA---------------HLSGTCTC 64

Query: 71  MKWL--------SVDRKKKR------KLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDC 115
           + W         S  RKK++      K  + LL LGT  G +L  +   G+L  +L S  
Sbjct: 65  LAWAPARLQAKESHQRKKRKSEVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGG 124

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H   V+ I +     C+YS   D  + E    T  +  K++     +S + +S DGKML 
Sbjct: 125 HENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLL 184

Query: 176 TAAGQLKTFNCSDHKKMQKFSGHPGAV---RFMTFSDN---------GKYVLSSAVGERY 223
           +A   +K +     +  + F+GH   V   RF T   N         G Y LS AV +R 
Sbjct: 185 SAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRL 244

Query: 224 IALWRTDGV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
           + +W+     K++SA     +    V++D    +N    +  + +  +   G  +++   
Sbjct: 245 LNVWQVRSENKEKSAVMSFTVTDEPVYVDLTLSEN---KEEPVKLAVVCRDGQVHLF--- 298

Query: 283 NIEELRNTKATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338
             E + N    K L+S+  +      K +K     I        +   S+   + YG   
Sbjct: 299 --EHILNGHCKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWF 354

Query: 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVL 396
           +P+ +++ +NS +D ++   +D          + +     V+  +T +     N+E  VL
Sbjct: 355 QPTIERVALNS-KDTHICLERD----------ISNCWAPTVETAITKVKTPVMNSEAKVL 403

Query: 397 PLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDR 456
            +P I   +                   +    +Q K  E K      EA      +E+R
Sbjct: 404 -VPGIPGHH-----------------APIKLPPAQPKEAENKRKLGSTEA-----TIEER 440

Query: 457 LRSLGI--LSNKDDLLSNSALEATLFNGI---DFE------TNIPVKKMRATILSLSPTN 505
           L ++ +     KDDL +NS     L  G+   DFE          V  ++ T+L +    
Sbjct: 441 LGAMDLDRKGRKDDLQTNS-FAVLLTQGLESNDFEILNKVLQTKNVNLIKRTVLRIPLRV 499

Query: 506 ACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563
              LL+ L    Q        ++QW+  +L  H  +L +   L   L +LY++ + ++
Sbjct: 500 VIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRV 557

Mus musculus (taxid: 10090)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 40/257 (15%)

Query: 12   SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            SF+P  D  A  + D  +KIW    G+         + +T   + N + + + S D   +
Sbjct: 1411 SFTPQGDLIASANADKTVKIWRVRDGK---------ALKTLIGHDNEVNKVNFSPDGKTL 1461

Query: 72   KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
               S  R    KL +                VS G+ K  L   H   V  +SF+  G  
Sbjct: 1462 A--SASRDNTVKLWN----------------VSDGKFKKTLKG-HTDEVFWVSFSPDGKI 1502

Query: 132  IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDH 189
            I SA AD  +   D  +G+L+    A    +  +  + DG MLA+ +    +K +   D 
Sbjct: 1503 IASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDG 1562

Query: 190  KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG-----VKKQSASCVLAME 244
              +  FSGH   V   +FS +G+Y+ +SA  ++ + +W+ DG     + +  A  + A+ 
Sbjct: 1563 HLLHTFSGHSNVVYSSSFSPDGRYI-ASASEDKTVKIWQIDGHLLTTLPQHQAGVMSAIF 1621

Query: 245  HPAVFMDCRCIDNGGVD 261
             P    D + + +G +D
Sbjct: 1622 SP----DGKTLISGSLD 1634

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   + ++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + ++R  ++ + C+  S DGK LA+AA    +K ++ +  K M +F GH G V  +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246
            F  N +Y+L+S   +R I  W  D  K Q  SC+     P
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGP 233

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   + ++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + ++R  ++ + C+  S DGK LA+AA    +K ++ +  K M +F GH G V  +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246
            F  N +Y+L+S   +R I  W  D  K Q  SC+     P
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGP 233

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++  R    H   + ++ F  +GS + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKI-LRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + K+++ T+ + C+  S DGK LA+AA    +K ++ +  K M +F+GH G V  +
Sbjct: 136 RKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDD 262
            F  + +Y+L+S   +R I  W  D  K    SC+     P    +F    C   GG  D
Sbjct: 196 EFHPS-EYLLASGSSDRTIRFW--DLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQD 252

Query: 263 A 263
           +
Sbjct: 253 S 253

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

>sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia GN=GSPATT00007594001 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H  GV+ ++F      + SA  DG +   D  +G      +  T  ++C+A    GK + 
Sbjct: 104 HRAGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGKYIC 163

Query: 176 TAAGQL--KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
           +A+  L  K +   +H  ++   GH  +V  + FSD+G ++L SA  ++ I LW      
Sbjct: 164 SASSDLSIKLWELKNHTCVKTLIGHEHSVSTVQFSDHGDFIL-SASRDKSIKLWEV---- 218

Query: 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEEL 287
            Q+  C         ++ C    N   D+  +   + S+  + YIW    GQ + +L
Sbjct: 219 -QTGFCKKTFSEHQEWVRCAVFSN---DEKQM--ASCSQDQMIYIWVIDSGQILHQL 269

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Paramecium tetraurelia (taxid: 5888)

>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
           G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct: 187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246

Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
           +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300

Required for ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   VS++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSLRIWDLEAAKILRTLMG-HKANVSSLDFHPYGEFVASGSLDTNIKLWDVR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFM 205
               + +++  T+ + C+  S DGK LA+A+    +K ++ +  K M + S H G V  +
Sbjct: 136 RKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNII 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFM--DCRCIDNGGVD 261
            F  N +Y+L+S   +R +  W  D  K Q   C      P  A+    D  CI  GG D
Sbjct: 196 EFHPN-EYLLASGSADRTVRFW--DLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKD 252

Query: 262 DAGLY 266
              +Y
Sbjct: 253 SLRVY 257

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus laevis (taxid: 8355)

>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 27/245 (11%)

Query: 7   RDILTS--FSPALDYFAICSGDARIKIWDTLKGQVQTEF-------------AD----IA 47
           +D++TS  FSP  +  A  S D  +++W   +    +EF             AD    + 
Sbjct: 60  KDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVT 119

Query: 48  STETTSLYGNRLEREHLSVD-YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG 106
           ++E  S+    + R+      Y    W+   R  K      L+V  +    +     ++ 
Sbjct: 120 ASEDKSIKVWSMYRQRFLYSLYRHTHWV---RCAKFSPDGRLIVSCSEDKTIKIWDTTSK 176

Query: 107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166
           Q     SD   G  + + F+ +G+CI SAG+D  V   D     LL  ++  + G++C++
Sbjct: 177 QCVNNFSDS-VGFANFVDFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQVHSCGVNCLS 235

Query: 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224
               G  L TA+  G +K  +  + + +    GH G V  ++FS +G+ + +S   +  +
Sbjct: 236 FHPSGNSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGE-LFTSGGADAQV 294

Query: 225 ALWRT 229
            +WRT
Sbjct: 295 LVWRT 299

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
313184296	629	putative transducin family protein / WD-	0.968	0.891	0.669	0.0
359477163	628	PREDICTED: WD repeat-containing protein	0.967	0.891	0.662	0.0
224110316	617	predicted protein [Populus trichocarpa]	0.937	0.880	0.656	0.0
255551877	586	nucleotide binding protein, putative [Ri	0.946	0.935	0.641	0.0
449464758	570	PREDICTED: uncharacterized protein LOC10	0.974	0.989	0.608	0.0
449531051	547	PREDICTED: uncharacterized LOC101213788,	0.944	1.0	0.624	0.0
356521817	626	PREDICTED: uncharacterized protein LOC10	0.953	0.881	0.608	0.0
356564408	626	PREDICTED: uncharacterized protein LOC10	0.953	0.881	0.603	0.0
147853966	692	hypothetical protein VITISV_025726 [Viti	0.967	0.809	0.572	0.0
297807165	615	hypothetical protein ARALYDRAFT_325654 [	0.927	0.873	0.574	0.0

>gi|313184296|emb|CBL94162.1| putative transducin family protein / WD-40 repeat family protein [Malus x domestica]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/562 (66%), Positives = 447/562 (79%), Gaps = 1/562 (0%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M SSNIRD+LT+FSP+LD FAI SGD RIKIWDT+KGQVQTEF DI ++E TS+Y  R E
Sbjct: 1   MASSNIRDLLTAFSPSLDLFAISSGDGRIKIWDTVKGQVQTEFTDIVASEDTSIYAKR-E 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTCMKW S +RKKKRKLGSS LVLGTGGGDVLAL V+AG LKWR++DCH GGV
Sbjct: 60  RGHLSVDYTCMKWFSSERKKKRKLGSSFLVLGTGGGDVLALDVAAGHLKWRVNDCHAGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           S+ISFA + SC+Y+AGADGM+C+ID LTG+L GKF+ASTK IS M+VSS+G +LATAA Q
Sbjct: 120 SSISFARNTSCLYTAGADGMICQIDSLTGNLSGKFKASTKAISSMSVSSNGNILATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FN SDHKK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIA+W  DG KKQSAS V
Sbjct: 180 MKIFNLSDHKKIQKFSGHPGAVRCMIFTEDGKYILSSAVGERYIAVWSIDGGKKQSASVV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           L MEHPA+F+D RCID+G V D GLYVLAISE GVCY W+GQNIEELR+ K TKI  SSE
Sbjct: 240 LKMEHPAIFVDSRCIDSGEVGDVGLYVLAISEVGVCYFWFGQNIEELRSAKPTKISLSSE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ S + K A   IFAA +Q I K AS   FVAYG  +KPSFQK+LV+SG DI L+ S D
Sbjct: 300 DILSTTYKGALPTIFAAVIQGIAKAASGQVFVAYGSPVKPSFQKLLVHSGTDIKLSSSHD 359

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           GVLLPMSQSL+KSK+G+ VQNRV ALDRANAE+A+ P+PK+ DS++KK RH  LS   DE
Sbjct: 360 GVLLPMSQSLVKSKKGQNVQNRVIALDRANAEEALHPMPKVFDSHEKKKRHDKLSFGQDE 419

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
            M D+ DS  +A  ++ KDD VE+EAD+  +CMEDRL++LGILS  DD   NS L +  F
Sbjct: 420 EMADLDDSRGRAGLVKSKDDMVELEADTAAICMEDRLKALGILSKVDDHTFNSTLNSATF 479

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID + N+P KKMR  +LSL P++ACKLL VLV  WQ+RS  G N+L WIY ILVNHGH
Sbjct: 480 KGIDLQRNMPHKKMREAVLSLEPSDACKLLGVLVATWQTRSSSGNNVLPWIYSILVNHGH 539

Query: 541 HLLSQESLTPMLSSLYKVRKKK 562
            ++SQ+S T MLSSL KV K +
Sbjct: 540 DIMSQKSETQMLSSLLKVTKSR 561

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477163|ref|XP_002271327.2| PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera] gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/563 (66%), Positives = 451/563 (80%), Gaps = 3/563 (0%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1   MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTC+KWLS+D KKKRKL  SLLVLGTG GDVLAL VSAG+LKWR+ DCHPGGV
Sbjct: 60  RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           SAIS +T GSCIY+AGADGM+ +ID   G+LLGKFRASTK IS M+VSSDGK+LATAA Q
Sbjct: 120 SAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LK  N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQSASCV
Sbjct: 180 LKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPAVF+D RCIDNG  D +GLYVLAISE GVCY WY +N+E+LRNTK TK+  S E
Sbjct: 240 LAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVSVSLE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D  SK+ K +   IFAAKLQ +VKPAS   FVAYG L+KPSFQK++V+SG DI +N SQD
Sbjct: 300 DNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKINISQD 359

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLPM QS  KSK+G  V++ VTALDRANAE+A+LP+PKI D ++K  R+QN + D DE
Sbjct: 360 GILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNIDPDE 418

Query: 421 VMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATL 479
           +M  D+++  SQ K +E KD    VEA ++T C+E++LRSLG+L NKDDL SNS L +  
Sbjct: 419 IMADDLMNVRSQNKAVESKDGLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSMLNSRK 478

Query: 480 FNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG 539
           F GI  E N+P KKMRA + S+ P +A +LL+VLV +WQSRS  G  +L WIY ILVNH 
Sbjct: 479 FKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTILVNHS 538

Query: 540 HHLLSQESLTPMLSSLYKVRKKK 562
            H++SQE +T +L SL++  K +
Sbjct: 539 QHIVSQEPVTQLLDSLHQSTKSR 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110316|ref|XP_002315482.1| predicted protein [Populus trichocarpa] gi|222864522|gb|EEF01653.1| predicted protein [Populus trichocarpa]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/559 (65%), Positives = 440/559 (78%), Gaps = 16/559 (2%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
           D+LT+FSP+LDY AI SGD RIKIWDTLKGQVQTEFADI S+E    +  + ER HLSVD
Sbjct: 10  DLLTAFSPSLDYLAISSGDGRIKIWDTLKGQVQTEFADITSSEGD--FYAKPERGHLSVD 67

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
           Y CMKWLS+D+KKKRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGVSA+SF+T
Sbjct: 68  YKCMKWLSLDKKKKRKLGSSLLVLGTGSGDVLALDVSAGQLKWSVSDCHPGGVSAVSFST 127

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCS 187
             SCIY++GADGM+C+ DP TG+ LGKFRASTK ISCM+VSSDGK+LATAA QLK FNCS
Sbjct: 128 RDSCIYTSGADGMICKTDPQTGNTLGKFRASTKAISCMSVSSDGKILATAAAQLKIFNCS 187

Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247
           DHKKMQKFSGHPGAVR M F+D+GKY+LSSAVGERY+ALWR DG K+QSASCVLAMEHPA
Sbjct: 188 DHKKMQKFSGHPGAVRSMVFTDDGKYILSSAVGERYVALWRIDGGKRQSASCVLAMEHPA 247

Query: 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307
           VF+DC+C +N GVDDAGLYVLAISETGVCY W G+N+EELRN+K TK+L S E+   K+ 
Sbjct: 248 VFIDCKCFENEGVDDAGLYVLAISETGVCYTWCGKNVEELRNSKPTKVLLSYEEF-PKNH 306

Query: 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS 367
           K A   + AAKLQ   KP + + F+AYGLL+KPSFQKIL++ G DI LN SQDGVLLP+S
Sbjct: 307 KGALPTVLAAKLQGTAKPTAANVFIAYGLLVKPSFQKILMHPGTDIKLNSSQDGVLLPLS 366

Query: 368 QSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVD 427
           QSL  +K+ R +QNRVTALDRAN EDA+LPLPK+ D ++KK R+ N+  D DEVM +  +
Sbjct: 367 QSLSNTKKARDLQNRVTALDRANVEDALLPLPKVYDLHEKKMRNMNI-VDHDEVMEESAE 425

Query: 428 SESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFET 487
           S+            V VE D+ T  ME +LR L IL +KDD + +  L++    GI+ E 
Sbjct: 426 SKD-----------VMVEVDAVTTSMEKQLRLLNILGSKDDGILSPTLDSATLKGINLED 474

Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQES 547
           NIP+KKMRAT+LS+ P+NA KLLEVLV  WQSRS  GK +L WIY ILVNHG ++++QE 
Sbjct: 475 NIPLKKMRATVLSMEPSNAYKLLEVLVAKWQSRSNSGKCVLPWIYCILVNHGQYIVAQEK 534

Query: 548 L-TPMLSSLYKVRKKKLFA 565
             + ML+SL K+ K +  A
Sbjct: 535 PESQMLNSLLKITKSRAVA 553

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551877|ref|XP_002516984.1| nucleotide binding protein, putative [Ricinus communis] gi|223544072|gb|EEF45598.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/566 (64%), Positives = 444/566 (78%), Gaps = 18/566 (3%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M SSNIRDILT+FSP+LDYFAI SGD R+KIWDT+KGQ+QTEFADI S+     Y  + E
Sbjct: 1   MVSSNIRDILTAFSPSLDYFAISSGDGRVKIWDTVKGQLQTEFADITSSNNADFY-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLS+DYTCMKWLS+DRK+KRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGV
Sbjct: 60  RGHLSIDYTCMKWLSLDRKRKRKLGSSLLVLGTGSGDVLALDVSAGQLKWTVSDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           SAISF+T  SCIY+AGADGM C++DP TG++LGKFRASTK IS ++VS DGK+LATAA Q
Sbjct: 120 SAISFSTSDSCIYTAGADGMCCKLDPQTGNMLGKFRASTKAISSVSVSPDGKILATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LKT N SD+KK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIALWRTDGVKKQ+ASCV
Sbjct: 180 LKTINLSDNKKIQKFSGHPGAVRAMIFTEDGKYILSSAVGERYIALWRTDGVKKQTASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPAVF+D +C++N GVDDAGL V+AISETGVCY W GQN+EELR  K TKI+  SE
Sbjct: 240 LAMEHPAVFLDSKCLENKGVDDAGLCVMAISETGVCYTWCGQNVEELRIAKPTKIVLFSE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D  SK+QK     IFAAKLQ   KP + H F+A GLL+KP FQKI+V+SG D+NL+ SQD
Sbjct: 300 D--SKNQKGGLRTIFAAKLQGTAKPMAAHVFIACGLLVKPLFQKIVVHSGTDMNLDISQD 357

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLPM++ +LKSK+G  VQNRVTALDRAN EDA LP+ K+ D ++K+ R + ++ + DE
Sbjct: 358 GILLPMNRPILKSKKGIDVQNRVTALDRANVEDASLPISKVSDFHEKRMRDKTVNIETDE 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VM  ++D+ SQ + +E      + E D+ T  ME +LR L ILS+K D        + + 
Sbjct: 418 VMVGLMDARSQPESVE------DREVDAVTTSMEKQLRLLEILSSKGD--------SMIL 463

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
             ID E N+P KKMRA +LS+ P+NA KLLEVLV  WQSRS  GK +L W+Y ILVNHGH
Sbjct: 464 GSIDLEANVPQKKMRAAVLSMEPSNASKLLEVLVAKWQSRSCSGKYVLPWMYCILVNHGH 523

Query: 541 HLLSQESL-TPMLSSLYKVRKKKLFA 565
           H+++Q+   T ML+SL ++ K +  A
Sbjct: 524 HIMAQDKPETQMLNSLLEITKSRGVA 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464758|ref|XP_004150096.1| PREDICTED: uncharacterized protein LOC101213788 [Cucumis sativus]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/578 (60%), Positives = 441/578 (76%), Gaps = 14/578 (2%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD  ++++TS+   + E
Sbjct: 1   MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDY CMKWLS+++K+KRK    LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60  KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           ++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W  DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPA+F+D RC ++GG D+  LY+LAISE G CY+WYGQN+EELR  K TKIL S  
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ SKS+K A  AI+AAKLQ + K  S   F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP SQS+ KSK+G  VQ  V ALDRANAEDA+ P+PKI DS +K   +Q+L  D  +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VMT +VDS S+       +D V V+ DS  VCMED+LRSLGIL N DD +  S L+  + 
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID E NI  KK+R  +LSL+P +A KLL  LV++WQSR + GKN+L WIY +L+NH  
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530

Query: 541 HLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFL 578
           H+LSQE    ML SL+    K+  + A T  +   L L
Sbjct: 531 HILSQEQSAQMLDSLF----KQFVSVALTVVVTFLLSL 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531051|ref|XP_004172501.1| PREDICTED: uncharacterized LOC101213788, partial [Cucumis sativus]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/557 (62%), Positives = 434/557 (77%), Gaps = 10/557 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD  ++++TS+   + E
Sbjct: 1   MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDY CMKWLS+++K+KRK    LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60  KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           ++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W  DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPA+F+D RC ++GG D+  LY+LAISE G CY+WYGQN+EELR  K TKIL S  
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ SKS+K A  AI+AAKLQ + K  S   F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP SQS+ KSK+G  VQ  V ALDRANAEDA+ P+PKI DS +K   +Q+L  D  +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VMT +VDS S+       +D V V+ DS  VCMED+LRSLGIL N DD +  S L+  + 
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID E NI  KK+R  +LSL+P +A KLL  LV++WQSR + GKN+L WIY +L+NH  
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530

Query: 541 HLLSQESLTPMLSSLYK 557
           H+LSQE    ML SL+K
Sbjct: 531 HILSQEQSAQMLDSLFK 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521817|ref|XP_003529547.1| PREDICTED: uncharacterized protein LOC100815458 [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/560 (60%), Positives = 427/560 (76%), Gaps = 8/560 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
           M S+++R ILT+F+P+LD+FAI +GD R+KIWDTLKGQV TEFADI ST +T  +L+   
Sbjct: 1   MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKS 60

Query: 59  LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
               HL++DYTC+KW S ++K+KRK  SSLLVLGTGGGDVLAL V++ QL WRL+DCHPG
Sbjct: 61  SINGHLALDYTCIKWFSFEKKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPG 120

Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           GV AI+ + + S IY+AG DGMVC ID +TG+LL KF+ASTK +SCM+VS DG  LATAA
Sbjct: 121 GVRAIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAA 180

Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
            QLK FNCS+HKK+QKFSGHPG+VR M F+++GKYVLSSAVGERY+A+WR DG KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMLFTEDGKYVLSSAVGERYVAVWRIDGAKKQSAS 240

Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
           CVLAMEHPAVF+D RCID+G  D+AG+ VLAISE G+CY+W+G +IEELRN K TKI  S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLS 300

Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
            ED+ S++ K A  AI+AAKLQ I KPAS   F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360

Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
            DGVLLPMSQSL+K K+G   Q   TALDRANAEDA+LP+PK+ DS++K+   QN    L
Sbjct: 361 HDGVLLPMSQSLVKYKKGTNAQT-ATALDRANAEDALLPIPKVFDSHEKEKAFQN---SL 416

Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
           D+ + D     S+   +EI+DD  + E D   +CMEDR+RSLG++S++ D  SN  L   
Sbjct: 417 DKDVIDDFHRSSKDDSVEIEDDMAQSEID--VICMEDRMRSLGMISSESDYASNIELCCK 474

Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
           L  GID E  IPVKK+RA +LS+  T A KLLEVL+  W+SRS  GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATIPVKKIRAAVLSMKSTKAWKLLEVLLAAWKSRSSSGKYILPWIYSILVNH 534

Query: 539 GHHLLSQESLTPMLSSLYKV 558
             + + ++ +T  L+SL K+
Sbjct: 535 DLNHIPRQYVTCTLNSLDKI 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564408|ref|XP_003550446.1| PREDICTED: uncharacterized protein LOC100784148 [Glycine max]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/560 (60%), Positives = 429/560 (76%), Gaps = 8/560 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
           M S+++RDILT+F+P+LD+FAI +GD R+KIWDTL+GQV TEFADI ST +T  +L+   
Sbjct: 1   MASTDVRDILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTATTLHHKS 60

Query: 59  LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
               HL++DYTC+KW S D+K+KRK  SSLLVLGTGGGDVLAL +++GQL WRL+DCHPG
Sbjct: 61  SINGHLALDYTCIKWFSFDKKRKRKHISSLLVLGTGGGDVLALDIASGQLTWRLTDCHPG 120

Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           GV AI+ + + S IY+AGADGMVC ID +TG+LL KF+ASTK +SCM+VS DGK LATAA
Sbjct: 121 GVRAIASSANVSTIYTAGADGMVCLIDFMTGNLLEKFKASTKPVSCMSVSPDGKTLATAA 180

Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
            QLK FNCS+HKK+QKFSGHPG+VR M F+++GK++LSSAVGERY+A+WR +G KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKHILSSAVGERYVAVWRIEGAKKQSAS 240

Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
           CVLAMEHPAVF+D RCID+   D+AG+ VLAISE G+CY+W+G ++EELRN K TKI  S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSEEHDEAGICVLAISEIGICYLWFGNSVEELRNAKPTKISLS 300

Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
            EDV S++ K A  AI+AAKLQ I KPAS   F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDVPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360

Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
            DGVLLPMSQSL KSK+G   Q  VTALDRANAEDA+LP+PK+ DS++K+   Q     L
Sbjct: 361 HDGVLLPMSQSLGKSKKGTNAQT-VTALDRANAEDALLPIPKVFDSHEKEKAFQK---SL 416

Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
           D+ + D +   S+   +E++DD  + E D   +CMEDR+RSLG++S++    SN  L   
Sbjct: 417 DKDVIDDLHRSSKDDSVEMEDDMAQSEID--VICMEDRMRSLGMISSESVYASNIELCCK 474

Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
           L  GID E  +P+KK+RA +LS+  T A KLLEVL+  W+SRS  GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATVPMKKIRAAVLSMKSTKAGKLLEVLLAAWESRSSSGKYILPWIYSILVNH 534

Query: 539 GHHLLSQESLTPMLSSLYKV 558
               + Q+ +T  L+SL K+
Sbjct: 535 DLSGIPQQYVTRTLNSLDKI 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/627 (57%), Positives = 438/627 (69%), Gaps = 67/627 (10%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1   MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTC+KWLS+D KKKRKL  SLLVLGTG GDVLAL VSAG+LKWR+ DCHPG V
Sbjct: 60  RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGRV 119

Query: 121 --------SAISFATHGSCIY---------------SAGADG--MVCEIDPLTGSLLGKF 155
                     I+     S +Y               S   +G   V  +  L  S++GK+
Sbjct: 120 KFWKDKWCKNIALCDSFSSLYALTTSKEAWLVELWDSTSVEGGWTVGVLGSLGPSMIGKW 179

Query: 156 R---------------------------------------ASTKGISCMAVSSDGKMLAT 176
           R                                       ASTK IS M+VSSDGK+LAT
Sbjct: 180 RRGVSAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLAT 239

Query: 177 AAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236
           AA QLK  N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQS
Sbjct: 240 AAAQLKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQS 299

Query: 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296
           ASCVLAMEHPAVF+D RCIDNG  D +GLYVLAISE GVCY WY +N+E+LRNTK TK+ 
Sbjct: 300 ASCVLAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVS 359

Query: 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356
            S ED  SK+ K +   IFAAKLQ +VKPAS   FVAYG L+KPSFQK++V+SG DI +N
Sbjct: 360 VSLEDNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKIN 419

Query: 357 CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS 416
            SQDG+LLPM QS  KSK+G  V++ VTALDRANAE+A+LP+PKI D ++K  R+QN + 
Sbjct: 420 ISQDGILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNI 478

Query: 417 DLDEVMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSAL 475
           D DE+M  D+++  SQ K +E KDD   VEA ++T C+E++LRSLG+L NKDDL SNS L
Sbjct: 479 DPDEIMADDLMNVRSQNKAVESKDDLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSML 538

Query: 476 EATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL 535
            +T F GI  E N+P KKMRA + S+ P +A +LL+VLV +WQSRS  G  +L WIY IL
Sbjct: 539 NSTKFKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTIL 598

Query: 536 VNHGHHLLSQESLTPMLSSLYKVRKKK 562
           VNH  H++SQE +  +L SL+   K +
Sbjct: 599 VNHSQHIVSQEPVIQLLDSLHLSTKSR 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807165|ref|XP_002871466.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata] gi|297317303|gb|EFH47725.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/562 (57%), Positives = 427/562 (75%), Gaps = 25/562 (4%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M   NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y  ++ 
Sbjct: 1   MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDYTCMKWLS+++KKKRKLG+S+LVLGTGGGDVLAL V++GQLKWR+SDCHPGGV
Sbjct: 60  KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           +A+S +   SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct: 120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+T+G KKQSASCV
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGGVRCVAFTEDGKYVLSSAVGERYIAVWKTNGAKKQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LA+EHP VF+D      G  ++ GLYVLAISE GVCY WYG N+EEL N   TK+  ++ 
Sbjct: 240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D + K  K +   IFAAKLQ I+KP S H F+A GLL+KPSFQK+++  G D+ LN S+D
Sbjct: 296 DSSLKPHKGSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGTDLVLNASKD 355

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP++QS+ KS +G+ VQN+VT LDRA+AEDA+LP+ ++ D ++KK+  Q  SSD D 
Sbjct: 356 GILLPITQSVSKSSKGKGVQNKVTTLDRAHAEDALLPIARVADLHEKKSV-QLHSSDKD- 413

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
             TD+VD +SQA  +E             T  MED+LRSLGIL   D+    +   A++ 
Sbjct: 414 --TDMVD-QSQADHVE-------------TFSMEDKLRSLGILGGTDE--QKNVSYASII 455

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
           +GID E  +P KK+++ + S+ P++A K LE LV +WQ+R+  G+++L WIY I+VNH H
Sbjct: 456 DGIDLEAYLPPKKLKSAVSSMEPSSAFKTLEALVAMWQTRACGGRHLLPWIYSIMVNHSH 515

Query: 541 HLLSQESLTPMLSSLYKVRKKK 562
           +++SQE    +L++L K+ K +
Sbjct: 516 YIMSQEPKNQLLNTLVKITKSR 537

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
TAIR|locus:2147972	615	AT5G11240 "AT5G11240" [Arabido	0.746	0.702	0.571	8.1e-131
ZFIN|ZDB-GENE-021231-3	650	wdr43 "WD repeat domain 43" [D	0.559	0.498	0.243	2.4e-18
MGI|MGI:1919765	677	Wdr43 "WD repeat domain 43" [M	0.882	0.754	0.202	1.3e-12
UNIPROTKB|Q15061	677	WDR43 "WD repeat-containing pr	0.882	0.754	0.203	1.6e-12
UNIPROTKB|Q8IU52	348	TUWD12 "POC1 centriolar protei	0.193	0.321	0.295	3.6e-09
UNIPROTKB|G3V1X0	436	POC1B "POC1 centriolar protein	0.193	0.256	0.295	8.6e-09
UNIPROTKB|F1P8S8	478	POC1B "Uncharacterized protein	0.193	0.234	0.295	9e-09
UNIPROTKB|A5PKH9	478	WDR51B "Uncharacterized protei	0.193	0.234	0.295	9e-09
UNIPROTKB|Q8TC44	478	POC1B "POC1 centriolar protein	0.193	0.234	0.295	1.2e-08
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.193	0.235	0.286	3.2e-08

TAIR|locus:2147972 AT5G11240 "AT5G11240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 251/439 (57%), Positives = 322/439 (73%)

Query:     1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
             M   NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y  ++ 
Sbjct:     1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59

Query:    61 REHLSVDYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGV 120
             + HLSVDYTCMKWLS++                          ++GQLKWR+SDCHPGGV
Sbjct:    60 KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119

Query:   121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
             +A+S +   SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct:   120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASTQ 179

Query:   181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
             LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+TDG KKQSASCV
Sbjct:   180 LKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCV 239

Query:   241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
             LA+EHP VF+D      G  ++ GLYVLAISE GVCY WYG N+EEL N   TK+  ++ 
Sbjct:   240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295

Query:   301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
             D + K  KS+   IFAAKLQ I+KP S H F+A GLL+KPSFQK+++  G D+ LN S+D
Sbjct:   296 DSSLKPYKSSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKD 355

Query:   361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
             G+LLP++QS+ KS + + VQN+VT LDRA+AEDA+LP+ ++ D ++KK+   + SSD D 
Sbjct:   356 GILLPITQSVSKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQLH-SSDKDT 414

Query:   421 VMTDVVDSESQAKF-MEIK 438
              M D   ++    F ME K
Sbjct:   415 YMVDQSHADHVETFSMEDK 433

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

ZFIN|ZDB-GENE-021231-3 wdr43 "WD repeat domain 43" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 86/353 (24%), Positives = 146/353 (41%)

Query:    12 SFSPALDYF-AICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP    F A+C+ D R++IW+T    +Q E+   A +++  T   +G  R  +E   V
Sbjct:    13 AFSPKSHQFLALCAQDGRLRIWNTESKTLQQEYVPSAHLSAACTCVTWGPCRAVQE---V 69

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGVSAISFA 126
                  K    D                            G L   L   H G V+++ + 
Sbjct:    70 PQR--KRRKCDAASSAEQSDLLALGTAAGTILIYSTLK-GDLHCTLDGGHSGPVNSVQWH 126

Query:   127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
                S +YS   D  + E D  TG +  K++A    IS + +S DGKML +A   +K ++ 
Sbjct:   127 PEDSVLYSGSDDTHIAEWDLKTGKVCCKWKADRSAISSLCISPDGKMLLSAGMTIKMWDL 186

Query:   187 SDHKKMQKFSGHPGAVRFMTFS------DNGKYVLSSAVGERYIALW--RTDGVKKQSAS 238
                +  +KF+GH   V  + F+       NG Y LS AV +R +++W  R+DG  K S  
Sbjct:   187 ETKEVYRKFTGHSTMVTTLCFATTRPPDSNGMYFLSGAVHDRLLSVWQVRSDGKDKNSVV 246

Query:   239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
                  + P   +D   +      D  + +  + + G  +++     E   N +  K LS 
Sbjct:   247 SFTLTDEPQ-HID---LQTSNSKDEAVRLAVVCKDGQLHLF-----EHFLNGQCKKPLSP 297

Query:   299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351
             +  +   + K  +  +    L   +     +  +AYG  L+P  +K   N+ E
Sbjct:   298 ACSLQVSTMKGESP-VPVPLLAAALCADRQNLMLAYGHHLQPVMEKTPFNTSE 349

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0001525 "angiogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

MGI|MGI:1919765 Wdr43 "WD repeat domain 43" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 117/579 (20%), Positives = 229/579 (39%)

Query:    12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP +  YFA+ S D ++++W+T   ++  E+   A ++ T T   +   RL+ +    
Sbjct:    20 AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE--- 76

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
              +   K  S                              G+L  +L S  H   V+ I +
Sbjct:    77 SHQRKKRKS--EVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQW 134

Query:   126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
                  C+YS   D  + E    T  +  K++     +S + +S DGKML +A   +K + 
Sbjct:   135 HQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194

Query:   186 CSDHKKMQKFSGH--P-GAVRFMTFSDN---------GKYVLSSAVGERYIALW--RTDG 231
                 +  + F+GH  P  ++RF T   N         G Y LS AV +R + +W  R++ 
Sbjct:   195 LETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSEN 254

Query:   232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291
              +K +       + P V++D    +N    +  + +  +   G  +++     E + N  
Sbjct:   255 KEKSAVMSFTVTDEP-VYVDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNGH 305

Query:   292 ATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347
               K L+S+  +      K +K     I        +   S+   + YG   +P+ +++ +
Sbjct:   306 CKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWFQPTIERVAL 363

Query:   348 NSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTAL-DRANAEDAVLPLPKILDS 404
             NS +D ++   +D      P  ++ +   +   + +    L        A + LP     
Sbjct:   364 NS-KDTHICLERDISNCWAPTVETAITKVKTPVMNSEAKVLVPGIPGHHAPIKLPPAQPK 422

Query:   405 YDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS 464
               +  R    +    E     +D + + +    KDD   ++ +S  V     L + G+ S
Sbjct:   423 EAENKRKLGSTEATIEERLGAMDLDRKGR----KDD---LQTNSFAV-----LLTQGLES 470

Query:   465 NKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524
             N  ++L N  L+           N+ +K+   T+L +       LL+ L    Q      
Sbjct:   471 NDFEIL-NKVLQTK-------NVNL-IKR---TVLRIPLRVVIPLLQELTKRLQGHPNSA 518

Query:   525 KNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563
               ++QW+  +L  H  +L +   L   L +LY++ + ++
Sbjct:   519 ALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRV 557

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q15061 WDR43 "WD repeat-containing protein 43" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 118/581 (20%), Positives = 230/581 (39%)

Query:    12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP +  YFA+ S D  +++W+T   ++  E+   A ++ T T   +   RL+ +  S 
Sbjct:    20 AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE-SP 78

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
                  K  +V                             G+L  +L S  H   V+ I +
Sbjct:    79 QRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVK----GELHSKLISGGHDNRVNCIQW 134

Query:   126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
                  C+YS   D  + E +  T  +  K++     +S + +S DGKML +A   +K + 
Sbjct:   135 HQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194

Query:   186 CSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALW--RTD 230
                 +  + F+GH   V  + F+               G Y LS AV +R + +W  R++
Sbjct:   195 LETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSE 254

Query:   231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290
               +K +       + P V++D    +N    +  + +  +   G  +++     E + N 
Sbjct:   255 NKEKSAVMSFTVTDEP-VYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNG 305

Query:   291 KATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKIL 346
                K L+S+  +      K +KS    I            S+   + YG   +P+ +++ 
Sbjct:   306 YCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSL--LLVYGSWFQPTIERVA 363

Query:   347 VNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVLPLPKIL 402
             +NS E  ++   +D      P  ++ +   R   + +    L         A+ P P   
Sbjct:   364 LNSREP-HMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQT 422

Query:   403 DSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI 462
             +  + K +       ++E +   +D ++  K       K +++ +S  V     L + G+
Sbjct:   423 EQVESKRKSGGNEVSIEERL-GAMDIDTHKK------GKEDLQTNSFPV-----LLTQGL 470

Query:   463 LSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSY 522
              SN  ++L N  L+           N+ +KK   T+L +       LL+ L    Q    
Sbjct:   471 ESNDFEML-NKVLQTR-------NVNL-IKK---TVLRMPLHTIIPLLQELTKRLQGHPN 518

Query:   523 KGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563
                 ++QW+  +L  H  +L +   L P L +LY++ + ++
Sbjct:   519 SAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESRV 559

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8IU52 TUWD12 "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:    57 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 116

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   117 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 170

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3V1X0 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   145 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 204

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   205 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 258

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1P8S8 POC1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 34/115 (29%), Positives = 59/115 (51%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  + TA
Sbjct:   187 GFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + SS   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFSSGGADTQVLLWRTN 300

GO:0042384 "cilium assembly" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|A5PKH9 WDR51B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 34/115 (29%), Positives = 60/115 (52%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + ++F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFTSGGADAQVLLWRTN 300

GO:0042384 "cilium assembly" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|Q8TC44 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300

GO:0005813 "centrosome" evidence=IDA

GO:0005814 "centriole" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 136 (52.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
 Identities = 33/115 (28%), Positives = 61/115 (53%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G +K  +  + + +    GH G V  ++FS +G+ +L+S   +  + +WRT+
Sbjct:   247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGE-LLTSGGADAQVLIWRTN 300

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	579
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-12
pfam04003	109	pfam04003, Utp12, Dip2/Utp12 Family	2e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 29/240 (12%)

Query: 13  FSPALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGNRLEREHLSV--D 67
           FSP     A  SGD  IK+WD   G++                S  G  L     S   D
Sbjct: 17  FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL----ASGSSD 72

Query: 68  YTCMKWLSVDRKKKRKLG------SSLLVLGTGGGDVLALAVSAGQLK-WRLSD------ 114
            T   W     +  R L       SS+     G   +L+ +     +K W +        
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTT 130

Query: 115 --CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
              H   V++++F+  G+ + S+  DG +   D  TG  +      T  ++ +A S DG+
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Query: 173 MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
            L +++  G +K ++ S  K +    GH   V  + FS +G   L+S   +  I +W   
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 34/211 (16%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
           +FSP     +  S D  IK+WD   G+  T                   R H       +
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-----------------RGHTD-WVNSV 141

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHG 129
            +                 + +   D  +    +  G+    L+  H G V++++F+  G
Sbjct: 142 AFSPDGT-----------FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDG 189

Query: 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187
             + S+ +DG +   D  TG  LG  R    G++ +A S DG +LA+ +  G ++ ++  
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218
             + +Q  SGH  +V  + +S +GK + S +
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQE 546
            IP   +  T+LSL  +   +LLE L +  Q  RS   + +L+W+ F+L  HG +L+S  
Sbjct: 12  KIPPSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLLRIHGKYLVSNP 71

Query: 547 SLTPMLSSLYKVRKKKL 563
           +L P L SL KV ++++
Sbjct: 72  NLLPQLRSLQKVLRRRV 88

This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2. Length = 109

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 85/376 (22%), Positives = 142/376 (37%), Gaps = 39/376 (10%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEF------ADIASTETTSLYGNRLEREHLS 65
           +FSP  +     S D  IK+WD   G+   +       + ++    +S  GN +     S
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 66  VDYTCMKW-LSVDRKKKRKL----GSSLLVLGTGGGDVLALAVSA-GQLK-WRLS----- 113
           +D T   W LS   K  R L     S   +  +  G +LA   S  G +K W L      
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 114 ---DCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                H   VS+++F+  G   I S  +DG +   D  TG LL    +        + S 
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251

Query: 170 DGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226
           DG +LA+ +  G ++ ++      + +  SGH  +V  + FS +GK + S +  +  + L
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRL 310

Query: 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW---YGQN 283
           W  +  K  S+  +    H           +G +      V   S+ G   +W    G+ 
Sbjct: 311 WDLETGKLLSS--LTLKGHEGPVSSLSFSPDGSL-----LVSGGSDDGTIRLWDLRTGKP 363

Query: 284 IEELRNTKATKILSSSEDVNSKSQKSA--TAAIFAAKLQDIVKPASVHTFVAYGLLLKPS 341
           ++ L        +S S D    S  S   T  ++      +++    HT     L   P 
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Query: 342 FQKILVNSGEDINLNC 357
             K L +   D  +  
Sbjct: 424 -GKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H GGV+ ++F+  G  + +   DG +   D  TG LL   +  T  +  +A S+DG  LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 176 TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
           + +    ++ ++    + ++  +GH   V  + FS +G+ + SS
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208
           L    +  T G++C+A S DGK+LAT +  G +K ++    + ++   GH G VR +  S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 209 DNGKYVLSSAVGERYIALWRTDGVKK 234
            +G Y+ S +  ++ I LW  +  + 
Sbjct: 61  ADGTYLASGS-SDKTIRLWDLETGEC 85

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 8e-06
 Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 29/218 (13%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
           S +   +++SFSP     A  S D  I++WD              S+   S+  +     
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS----- 293

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
                                 G  L    + G   L    +   L       H G VS+
Sbjct: 294 --------------------PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 123 ISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA--AG 179
           +SF+  GS + S G+ DG +   D  TG  L      +  +  ++ S DG+++++    G
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDG 392

Query: 180 QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
            ++ ++ S    ++   GH   V  + FS +GK + S 
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG- 161
           VS   L   L   H   +++I+F+  G  + S  +DG +   D   G  L K        
Sbjct: 51  VSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110

Query: 162 -ISCMAVSS-DGKMLATAA----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYV 214
            +S +A+SS DG  +  A+    G +K ++ S   K ++   GH  +V  + FS +GK +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274
            S +  +  I LW     K  S    LA     V       D       GL + + S  G
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDG------GLLIASGSSDG 221

Query: 275 VCYIWYGQNIEELRNT 290
              +W     + LR+T
Sbjct: 222 TIRLWDLSTGKLLRST 237

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG4547	541	consensus WD40 repeat-containing protein [General	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG2055	514	consensus WD40 repeat protein [General function pr	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG2096	420	consensus WD40 repeat protein [General function pr	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.76
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.71
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.61
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.59
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.56
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.55
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.49
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	99.49
KOG1963	792	consensus WD40 repeat protein [General function pr	99.49
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PRK03629	429	tolB translocation protein TolB; Provisional	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.46
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.44
KOG2139	445	consensus WD40 repeat protein [General function pr	99.44
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.43
KOG1310	758	consensus WD40 repeat protein [General function pr	99.43
KOG4227	609	consensus WD40 repeat protein [General function pr	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
KOG1310	758	consensus WD40 repeat protein [General function pr	99.39
KOG1334	559	consensus WD40 repeat protein [General function pr	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.34
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.26
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.23
KOG2315	566	consensus Predicted translation initiation factor	99.23
KOG2321	703	consensus WD40 repeat protein [General function pr	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.22
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.18
KOG2315	566	consensus Predicted translation initiation factor	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.1
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.07
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
KOG2314	698	consensus Translation initiation factor 3, subunit	99.01
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.0
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.94
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.92
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.9
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.88
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
KOG2314	698	consensus Translation initiation factor 3, subunit	98.86
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.82
COG4946	668	Uncharacterized protein related to the periplasmic	98.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.79
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.76
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.76
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.7
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.68
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.58
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.52
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.51
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.45
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.44
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.43
KOG2695	425	consensus WD40 repeat protein [General function pr	98.43
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.43
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.39
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.31
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.26
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.24
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.2
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.1
PRK02888	635	nitrous-oxide reductase; Validated	98.09
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.07
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.07
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.04
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.0
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.98
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
COG3391	381	Uncharacterized conserved protein [Function unknow	97.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.9
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.89
KOG3621	726	consensus WD40 repeat-containing protein [General	97.88
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.82
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.78
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.69
COG3391	381	Uncharacterized conserved protein [Function unknow	97.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.65
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	97.65
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.65
KOG3621	726	consensus WD40 repeat-containing protein [General	97.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.5
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	97.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.47
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.47
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.44
PRK13616	591	lipoprotein LpqB; Provisional	97.38
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.38
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.34
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.34
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.31
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.29
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.26
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.21
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.2
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.11
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.1
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.1
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.0
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.98
KOG2395	644	consensus Protein involved in vacuole import and d	96.98
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.97
PHA02713	557	hypothetical protein; Provisional	96.96
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.95
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.9
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.89
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.8
KOG2395	644	consensus Protein involved in vacuole import and d	96.76
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.71
PRK13616	591	lipoprotein LpqB; Provisional	96.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.62
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.33
PHA03098	534	kelch-like protein; Provisional	96.25
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.19
KOG2444	238	consensus WD40 repeat protein [General function pr	96.14
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.78
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.76
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.68
PHA02713	557	hypothetical protein; Provisional	95.65
PHA02790	480	Kelch-like protein; Provisional	95.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.64
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.44
KOG2444	238	consensus WD40 repeat protein [General function pr	95.43
PHA03098	534	kelch-like protein; Provisional	95.36
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.31
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.29
COG5167	776	VID27 Protein involved in vacuole import and degra	95.13
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.13
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.12
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.74
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.73
PHA02790	480	Kelch-like protein; Provisional	94.69
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.35
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.33
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.26
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.15
PRK10115	686	protease 2; Provisional	93.95
PRK13684	334	Ycf48-like protein; Provisional	93.9
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	93.81
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.62
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.33
PRK10115	686	protease 2; Provisional	93.26
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.76
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.56
PLN02193	470	nitrile-specifier protein	92.43
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.34
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.17
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.85
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.85
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.77
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.7
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.62
COG5167	776	VID27 Protein involved in vacuole import and degra	91.53
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.51
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.45
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.37
PLN02153	341	epithiospecifier protein	90.77
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.27
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.18
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.04
PRK13684	334	Ycf48-like protein; Provisional	89.98
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.89
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.82
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.41
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.63
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.46
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.41
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.37
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.01
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.58
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.93
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.37
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.33
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.21
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.17
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	84.65
COG4590	733	ABC-type uncharacterized transport system, permeas	84.63
KOG2247	615	consensus WD40 repeat-containing protein [General	84.35
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.03
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	83.59
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.52
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.26
COG4590	733	ABC-type uncharacterized transport system, permeas	82.49
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.24
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	81.58
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.49
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.38
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	81.18
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.54
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.42
PF14727	418	PHTB1_N: PTHB1 N-terminus	80.11
PF13449	326	Phytase-like: Esterase-like activity of phytase	80.08

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-51  Score=399.15  Aligned_cols=503  Identities=18%  Similarity=0.231  Sum_probs=367.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCC-CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +..+|  ..++|+..|.++|.|+.. |.+-||++++...+...++|...+.++.|+++                      
T Consensus       306 s~~~I--~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD----------------------  361 (893)
T KOG0291|consen  306 SDQKI--LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD----------------------  361 (893)
T ss_pred             cccee--eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence            44677  566999999999998864 89999999999999999999999998888888                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +.++++|+.||+|+|||...|-|+.++ ..|++.|+++.|+..|+.+++.+.||+|+.||+..++..++|.....
T Consensus       362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  362 -----GQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             -----CcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence                 899999999999999999999999777 67999999999999999999999999999999999999999987654


Q ss_pred             -CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       161 -~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                       +..|++..|.|.++.+|+   -.|++|++++|+.+..+.||.+||.++.|+|++..|++++ +|++|++||+-..... 
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~-  513 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT-  513 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence             789999999999999998   4899999999999999999999999999999999999987 9999999999776322 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                         +.++....... .+.|.     |+|+.|++++.||.|.+||.+.+.++..+++.+......-  ..+...+...-..
T Consensus       514 ---vEtl~i~sdvl-~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~--~~D~~ta~~sa~~  582 (893)
T KOG0291|consen  514 ---VETLEIRSDVL-AVSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK--ETDRITAENSAKG  582 (893)
T ss_pred             ---eeeEeecccee-EEEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc--ccceeehhhcccC
Confidence               23454554444 35565     9999999999999999999999988877766544322111  0000000000111


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEE----ecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCC
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKI----LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRAN  390 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~  390 (579)
                      -.+..+.|++||.++++.|...+-|.-.+    .... ..++.+.|-||...     .-+..++.+.+|.  +++ ++..
T Consensus       583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk-fqiS~N~sLdg~~e-----fln~rkmtEfG~~~LiD~-e~~~  655 (893)
T KOG0291|consen  583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK-FQISDNRSLDGVLE-----FLNRRKMTEFGNMDLIDT-EESD  655 (893)
T ss_pred             CceEEEEEcCCCCEEEecCCcccEEEEECchhheeee-EEeccccchhHHHH-----HhccccccccCCcccccc-cccc
Confidence            12334566666666666665544332111    1111 23333445555444     3344556665543  222 1111


Q ss_pred             c---cccccCCccccchhhhhhccccC----CCCccc-cccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCC
Q 008041          391 A---EDAVLPLPKILDSYDKKNRHQNL----SSDLDE-VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI  462 (579)
Q Consensus       391 ~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~  462 (579)
                      .   .+..+|+.+.++.+.|+.|+.-+    .+.++- .-+..+++|..+.++.+.- ..++-+-+.+.|.+...+++..
T Consensus       656 ~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~-~FDPf~LD~~vTPe~v~~al~~  734 (893)
T KOG0291|consen  656 LEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTI-LFDPFDLDVDVTPESVREALRE  734 (893)
T ss_pred             ccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCce-EEcccccccccCHHHHHHHHhc
Confidence            1   24679999999988887666310    000000 0022344444455443321 2222333345566655555533


Q ss_pred             CCCCCCCCCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 008041          463 LSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF  533 (579)
Q Consensus       463 ~~~~~~~~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~  533 (579)
                                ..+..+|+.+|         +++...|.++|+.++..||..|+.+||++|++-+ .++.+.+++++|+++
T Consensus       735 ----------qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l-~~s~HieF~l~W~~~  803 (893)
T KOG0291|consen  735 ----------QEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFL-ENSPHIEFYLRWLRA  803 (893)
T ss_pred             ----------chHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHH-hcCchHHHHHHHHHH
Confidence                      25677888888         4667789999999999999999999999999644 555568999999999


Q ss_pred             HHHHhcccccCCCC-hhHHHHHHHHHHHHhhhhh
Q 008041          534 ILVNHGHHLLSQES-LTPMLSSLYKVRKKKLFAS  566 (579)
Q Consensus       534 ll~~h~~~l~~~~~-l~~~l~~l~~~~~~r~~~~  566 (579)
                      ||.+||.++..... +.++|.+|++.|.+..+.+
T Consensus       804 il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l  837 (893)
T KOG0291|consen  804 ILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDL  837 (893)
T ss_pred             HHHHhhhhhhccceehhhHHHHHHHHHHHHHHHH
Confidence            99999999988774 5679999999999877433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-47  Score=374.06  Aligned_cols=505  Identities=16%  Similarity=0.195  Sum_probs=388.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++||  +.++|+|.|..||+|+.||.++|||+..+.+...|++|.+.+..+.|.+...                     
T Consensus       104 He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~---------------------  160 (775)
T KOG0319|consen  104 HEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN---------------------  160 (775)
T ss_pred             cCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc---------------------
Confidence            68999  8889999999999999999999999999999999999999999988887711                     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----  156 (579)
                          ..+|++|..|+.+++||+.+..........|.+.|+++.|.+|+..+++++.|..+.+||+.+.+...++.     
T Consensus       161 ----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~  236 (775)
T KOG0319|consen  161 ----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESL  236 (775)
T ss_pred             ----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhe
Confidence                35689999999999999996655224447899999999999999999999999999999985433211111     


Q ss_pred             --------------------------------------------------------------------------------
Q 008041          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       237 E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~  316 (775)
T KOG0319|consen  237 ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV  316 (775)
T ss_pred             eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe
Confidence                                                                                            


Q ss_pred             ----------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008041          157 ----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (579)
Q Consensus       157 ----------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~  188 (579)
                                                                    +|...|.+++...+|-+|++|+  +++++|.+++
T Consensus       317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence                                                          5667777888666788999998  7999997744


Q ss_pred             C----eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeee----eeecCceeEEeEEecCCc
Q 008041          189 H----KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNGG  259 (579)
Q Consensus       189 ~----~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  259 (579)
                      +    -++....+|.+.|.+++++..+. +|++++ .|+++++|++...+.......+    ....|+..+.++.++   
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia---  472 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA---  472 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEec---
Confidence            3    23556689999999999987665 566665 8999999999884332222222    344677788899998   


Q ss_pred             ccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC
Q 008041          260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK  339 (579)
Q Consensus       260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~  339 (579)
                        |+.+.+++||+|.+.+||+++.+..+..+.+++..+.+.. |++..+    .+++++.|+.+++        |.-..+
T Consensus       473 --~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-Fs~~dq----~laT~SgD~TvKI--------W~is~f  537 (775)
T KOG0319|consen  473 --PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-FSKNDQ----LLATCSGDKTVKI--------WSISTF  537 (775)
T ss_pred             --CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-eccccc----eeEeccCCceEEE--------EEeccc
Confidence              9999999999999999999999999999999998888877 787777    8999999886665        335578


Q ss_pred             ceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccCCccccchhhhhhccccCCCC
Q 008041          340 PSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSD  417 (579)
Q Consensus       340 ~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (579)
                      .|.+++.||+..|..+.|-.+|.+| +|++.||.+|+|++.+.  ..+++.  .+|+.|+....- ..            
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD~--H~DrvWaL~~~~-~~------------  601 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLDA--HNDRVWALSVSP-LL------------  601 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhhh--ccceeEEEeecC-cc------------
Confidence            8999999999999999999999999 99999999999999754  455553  235555433321 00            


Q ss_pred             ccccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCCCCCCCCCCCCchhhhhhccce---e----ecccCC
Q 008041          418 LDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----FETNIP  490 (579)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l---~----l~~~~~  490 (579)
                         .+...-+.+..+.-|++.++++..++.+.++.-.+|-++|+.....+++..|.-|+..|..+.   .    +.+.++
T Consensus       602 ---~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~  678 (775)
T KOG0319|consen  602 ---DMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERD  678 (775)
T ss_pred             ---ceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCC
Confidence               011111344556677777666555554444444445555544334555556656666666555   2    334456


Q ss_pred             hhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-hcccccCCCChhHHHHHHHHHHHH---hh---
Q 008041          491 VKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN-HGHHLLSQESLTPMLSSLYKVRKK---KL---  563 (579)
Q Consensus       491 ~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~-h~~~l~~~~~l~~~l~~l~~~~~~---r~---  563 (579)
                      ++.+..+|.+|...+...||+++. .|++|++++...++.|+.+|+. -...|+..|....+++.|.--.++   |+   
T Consensus       679 ~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~  757 (775)
T KOG0319|consen  679 PEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRL  757 (775)
T ss_pred             cHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHH
Confidence            889999999999999999999999 8999999999999999999984 566788999888888888766663   33   


Q ss_pred             -hhhhhhhce
Q 008041          564 -FASAFTCFI  572 (579)
Q Consensus       564 -~~~~~~~~~  572 (579)
                       +.+++..|.
T Consensus       758 ~~~~~lLdf~  767 (775)
T KOG0319|consen  758 VQDSALLDFT  767 (775)
T ss_pred             hhhhHHHHHh
Confidence             555666554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-47  Score=342.25  Aligned_cols=323  Identities=17%  Similarity=0.222  Sum_probs=276.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  +|++|+|+|.+||+|+.|.++|+||+.+.....+.++|...+.++.++|+                       
T Consensus       114 H~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD-----------------------  168 (480)
T KOG0271|consen  114 HGEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD-----------------------  168 (480)
T ss_pred             CCCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-----------------------
Confidence            35788  99999999999999999999999999999999999988877776666555                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                          +..|++|+.+|.|++||+.+|+.+.+.+.+|...|++++|.|     ..+++++++.||.|+|||+..+.++..+.
T Consensus       169 ----gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls  244 (480)
T KOG0271|consen  169 ----GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS  244 (480)
T ss_pred             ----cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence                788999999999999999999999898999999999999976     56789999999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----------cCCCE----------
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGKY----------  213 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-----------~~~~~----------  213 (579)
                      +|..+|+|+.|--+| ++++|+  ++|++|+...|+++++++||...|+.++.+           |.+++          
T Consensus       245 gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  245 GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            999999999998554 888888  899999999999999999999999999876           33433          


Q ss_pred             ---------------EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041          214 ---------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       214 ---------------l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  278 (579)
                                     +++++ +|.++.+|+....++.    +..+..+...+..+.|+     ||+++||+++.|..|++
T Consensus       324 Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkp----i~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkL  393 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKP----ITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKL  393 (480)
T ss_pred             HHHHHHHhhccCcceeEEec-CCceEEEecccccccc----hhhhhchhhheeeEEEC-----CCccEEEEeecccceee
Confidence                           88887 7999999998776532    34455666677778888     99999999999999999


Q ss_pred             EEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041          279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ||..+|+.+..+.++...+-... ++.|.+    .+++++.|..++.++        ...+.....+.||..+|.++.|+
T Consensus       394 W~g~tGk~lasfRGHv~~VYqva-wsaDsR----LlVS~SkDsTLKvw~--------V~tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  394 WDGRTGKFLASFRGHVAAVYQVA-WSADSR----LLVSGSKDSTLKVWD--------VRTKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             eeCCCcchhhhhhhccceeEEEE-eccCcc----EEEEcCCCceEEEEE--------eeeeeecccCCCCCceEEEEEec
Confidence            99999999988887765544433 566766    889999987655543        22333444677899999999999


Q ss_pred             CCcceeeccccceeccccee
Q 008041          359 QDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~  378 (579)
                      |||..+ +||+.|+.+++|.
T Consensus       461 pDG~rV-~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 PDGQRV-ASGGKDKVLRLWR  479 (480)
T ss_pred             CCCcee-ecCCCceEEEeec
Confidence            999999 9999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-44  Score=333.21  Aligned_cols=282  Identities=18%  Similarity=0.218  Sum_probs=254.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+.||  ..|.||+|++.|||||.+|.++||+..++..++.|.+|...+..+.|+|.                  +    
T Consensus       174 d~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~------------------~----  229 (459)
T KOG0272|consen  174 DTRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPV------------------D----  229 (459)
T ss_pred             CCCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccC------------------C----
Confidence            35788  77799999999999999999999999999999999988876665555554                  2    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         .+..+++|+.||.+++|++.+...+..+ .+|...|..++|+|+|++|.|++.|.+=++||+.++..+....+|..+
T Consensus       230 ---~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~  305 (459)
T KOG0272|consen  230 ---SDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG  305 (459)
T ss_pred             ---CccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence               0556999999999999999998887666 689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      |.+++|+|||.++++|+  ..-+|||+++|+++..+.+|..+|.++.|+|+|-.+++|| .|++++|||++..+.     
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~-----  379 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE-----  379 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc-----
Confidence            99999999999999999  6779999999999999999999999999999999999987 799999999999763     


Q ss_pred             eeeeecCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcc
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK  318 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  318 (579)
                      .++++.+...++-+.|+     | .|.+|++++.|+++++|...++..++                              
T Consensus       380 ly~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k------------------------------  424 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK------------------------------  424 (459)
T ss_pred             ceecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch------------------------------
Confidence            57888888888889998     6 78999999999999999876655432                              


Q ss_pred             ccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                               .+.||++.|.++..++||+++ +|+|.|+++|+|.
T Consensus       425 -------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 -------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR  458 (459)
T ss_pred             -------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence                                     345899999999999999999 9999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-43  Score=344.86  Aligned_cols=437  Identities=18%  Similarity=0.237  Sum_probs=319.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.||.+  +||.|...+++|+ .+.|+||+..+.++++++...                    ..-|..+.|.      
T Consensus       373 R~dVRsl--~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg------  423 (888)
T KOG0306|consen  373 RSDVRSL--CVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG------  423 (888)
T ss_pred             hhheeEE--EeecCceeeeecC-CCcEEEEEccCcceeEEeccc--------------------cEEEEEecCC------
Confidence            4568666  9999998888887 468999999999999988632                    2223344443      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----Cceee--Ee
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLG--KF  155 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~--~~  155 (579)
                         +.++++|..+|.+.+||+.....+.++ ++|.+.|++++.+||+..+++||.|.+|++||+.-     |...+  .+
T Consensus       424 ---d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl  499 (888)
T KOG0306|consen  424 ---DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL  499 (888)
T ss_pred             ---CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence               778999999999999999999887555 68999999999999999999999999999999641     21111  11


Q ss_pred             e-----cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          156 R-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       156 ~-----~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      +     .-...|.|+.+||||++++++-  ++++||-+++-+....+.||.-||.|+..+||++.+++|+ .|++|++|-
T Consensus       500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWG  578 (888)
T KOG0306|consen  500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWG  578 (888)
T ss_pred             ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEec
Confidence            1     1346899999999999999998  8999999999999999999999999999999999999988 799999999


Q ss_pred             cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccc
Q 008041          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (579)
                      ++-+.+     ...+-.|...+.++.|-     |..+.+++++.||.|+-||.+..+.+                     
T Consensus       579 LdFGDC-----HKS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i---------------------  627 (888)
T KOG0306|consen  579 LDFGDC-----HKSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI---------------------  627 (888)
T ss_pred             cccchh-----hhhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh---------------------
Confidence            999874     35555666666677777     89999999999999999997554433                     


Q ss_pred             ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeecc
Q 008041          309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDR  388 (579)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~  388 (579)
                                                        +++.+|...|++++.+|+|.++ +|+|+|.++++|+..+..-.+++
T Consensus       628 ----------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~lEe  672 (888)
T KOG0306|consen  628 ----------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILILEE  672 (888)
T ss_pred             ----------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceeeeh
Confidence                                              2455788899999999999999 99999999999998654444432


Q ss_pred             CCccccccCCccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCCCC----
Q 008041          389 ANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS----  464 (579)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~~~----  464 (579)
                      ..+.+..       ..-+..  .    .+.+...++...++..        +...-..-+....-+..++++....    
T Consensus       673 ekE~ErE-------e~yE~l--~----~~~e~~~~~~~~~g~~--------~~~skkTieSvk~aE~i~ea~di~~~e~~  731 (888)
T KOG0306|consen  673 EKEGERE-------EEYETL--L----ASEEVVAGDGSADGDA--------GVASKKTIESVKSAERILEALDIGREELT  731 (888)
T ss_pred             hhhhhhH-------HHHHHh--h----hhcccccCCCcccccc--------cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1110000       000000  0    0000000000000000        0000000000011122334444221    


Q ss_pred             CCCCC-CCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 008041          465 NKDDL-LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFI  534 (579)
Q Consensus       465 ~~~~~-~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~l  534 (579)
                      ...+. ++ .+. .++++|+         +.+..++...++.++.-||++|++.+|+++.+ +..++.+.+++++.+.+|
T Consensus       732 ~~ee~~~g-~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~-~~q~~~~veLv~rv~~fL  808 (888)
T KOG0306|consen  732 QLEEYSPG-HPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE-CIQRKSKVELVCRVLFFL  808 (888)
T ss_pred             hHHhhcCC-CCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH-HHcCCCcceeEeeeeeeh
Confidence            11111 11 122 4666666         34556788899999999999999999999985 445556799999999999


Q ss_pred             HHHhcccccCCCChhHHHHHHHHHHHHhh
Q 008041          535 LVNHGHHLLSQESLTPMLSSLYKVRKKKL  563 (579)
Q Consensus       535 l~~h~~~l~~~~~l~~~l~~l~~~~~~r~  563 (579)
                      ++.|.+++.+.++++|.|..+...++..+
T Consensus       809 ~rih~~~it~~~~~kp~l~~i~s~l~~~v  837 (888)
T KOG0306|consen  809 LRIHHKQITAHKNMKPLLEKIKSKLREIV  837 (888)
T ss_pred             hhhhhhhhccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=277.67  Aligned_cols=280  Identities=16%  Similarity=0.205  Sum_probs=246.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.|  .++.|++|+++++++|.||.+.|||..+...++.+.-....+-..+|+|.                         
T Consensus        56 ~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS-------------------------  108 (343)
T KOG0286|consen   56 NKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS-------------------------  108 (343)
T ss_pred             cce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-------------------------
Confidence            456  67799999999999999999999999999888888777777777777776                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCC--e---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~--~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                        +++++.|+-|+...||++.+.  +   .+.+.+.+|++-+.|+.|-+| .+|++++.|.+..+||+++|+.+..|.+|
T Consensus       109 --g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH  185 (343)
T KOG0286|consen  109 --GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGH  185 (343)
T ss_pred             --CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCC
Confidence              899999999999999999855  2   344556899999999999885 47889999999999999999999999999


Q ss_pred             CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .+.|.+++++| +++.+++|+  +..++||++.+.++++|.+|.+.|+++.|.|+|.-|++++ +|++.++||++..+..
T Consensus       186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQEL  264 (343)
T ss_pred             cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEE
Confidence            99999999999 999999998  8999999999999999999999999999999999999987 7999999999998755


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                         .++........+..+.|+     ..|++|++|..|.++.+||.-.++..                            
T Consensus       265 ---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~v----------------------------  308 (343)
T KOG0286|consen  265 ---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGERV----------------------------  308 (343)
T ss_pred             ---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccceE----------------------------
Confidence               555555555667788888     89999999999999999995333221                            


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                 ..+.+|++.|.++..+|||.-+ +|||.|.++|+|.
T Consensus       309 ---------------------------g~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~  343 (343)
T KOG0286|consen  309 ---------------------------GVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA  343 (343)
T ss_pred             ---------------------------EEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence                                       1345899999999999999999 9999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-39  Score=295.32  Aligned_cols=275  Identities=20%  Similarity=0.263  Sum_probs=219.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~  164 (579)
                      +..+++|+.|.++++||+.+....... ++|...|.|++|+|||+.|++|+.||+|++||..+|+++. .+.+|...|++
T Consensus       127 g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~  205 (480)
T KOG0271|consen  127 GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA  205 (480)
T ss_pred             CceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence            788999999999999999998887655 7899999999999999999999999999999999997765 59999999999


Q ss_pred             EEEcc-----CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          165 MAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       165 l~~~p-----~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ++|.|     .++++++++  |.|+|||+..++++..+.+|+.+|+|+.|--+| ++++++ .|++|++|+...+...  
T Consensus       206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS-~DrtIkvw~a~dG~~~--  281 (480)
T KOG0271|consen  206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS-QDRTIKVWRALDGKLC--  281 (480)
T ss_pred             EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC-CCceEEEEEccchhHH--
Confidence            99976     677899988  999999999999999999999999999997665 777776 8999999999887532  


Q ss_pred             eeeeeeecCceeEEeEEec------CCcccCCC-------------------------cEEEEEEcCCeEEEEEcCCce-
Q 008041          238 SCVLAMEHPAVFMDCRCID------NGGVDDAG-------------------------LYVLAISETGVCYIWYGQNIE-  285 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------------------------~~l~~~~~dg~i~iwd~~~~~-  285 (579)
                         ..+..+...+..+..+      .+.|+|.+                         ..+++|+.|+++.+|+....+ 
T Consensus       282 ---r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  282 ---RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             ---HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence               2333333333332222      11122333                         459999999999999865443 


Q ss_pred             eecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008041          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                      .+....++...+... .|+|+++    +|++++||..++++++        .....+..+.||-..|.+++||.|.++| 
T Consensus       359 pi~rmtgHq~lVn~V-~fSPd~r----~IASaSFDkSVkLW~g--------~tGk~lasfRGHv~~VYqvawsaDsRLl-  424 (480)
T KOG0271|consen  359 PITRMTGHQALVNHV-SFSPDGR----YIASASFDKSVKLWDG--------RTGKFLASFRGHVAAVYQVAWSADSRLL-  424 (480)
T ss_pred             chhhhhchhhheeeE-EECCCcc----EEEEeecccceeeeeC--------CCcchhhhhhhccceeEEEEeccCccEE-
Confidence            333222332222222 3899999    9999999987777553        2334455788999999999999999999 


Q ss_pred             ccccceecccceeeeec
Q 008041          366 MSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~~~  382 (579)
                      +|||.|.++|+|++..+
T Consensus       425 VS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             EEcCCCceEEEEEeeee
Confidence            99999999999999543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=285.39  Aligned_cols=473  Identities=31%  Similarity=0.405  Sum_probs=326.5

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec-----------cccccc
Q 008041           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-----------DRKKKR   82 (579)
Q Consensus        14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----------~~~~~~   82 (579)
                      +|.+.|+|....||.++|||+..++..++|..               ..+++..+++..|.-.           ....+.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p---------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~   66 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP---------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA   66 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc---------------chhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence            45678999999999999999999999998862               3555666777777521           111222


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      +.+...++.|+..|.|.+|+...|+..+++. ..|.++|.++.++.+-..|++++.|+.+..|+....+.++.+++....
T Consensus        67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL  146 (541)
T ss_pred             cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence            3357889999999999999999999988876 679999999999998889999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecC-----CCEEEEEecCCCeEEEEEcCC-Cccc
Q 008041          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ  235 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s~~~~d~~i~vwd~~~-~~~~  235 (579)
                      +.+++++|||+++++++++|++||+++++.+.+|+||.++|+++.|..+     |.+++++...++.+.+|-... .+..
T Consensus       147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk  226 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK  226 (541)
T ss_pred             cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence            9999999999999999999999999999999999999999999999877     788888776778899998876 4444


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCc--EEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      ...+.+..++.........-      .++.  +.++.+..+.+..|...+...+...++.++.....+  +.+      -
T Consensus       227 s~~~sl~~~dipv~~ds~~~------ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~--~s~------g  292 (541)
T KOG4547|consen  227 SLSCSLTVPDIPVTSDSGLL------EDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD--SSK------G  292 (541)
T ss_pred             hhheeeccCCCCeEeccccc------cccccceEEeeeccCceeeeccccHHHHhcCccccccceeee--ccc------c
Confidence            45677777676665554433      2333  555555545555555555544444444443332221  111      2


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe-ecCCcceeeccccceecccceeeeeceeeeccCCcc
Q 008041          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN-CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAE  392 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~-~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~  392 (579)
                      ++++.+...    ..+.++.||....+.++.+......-..+. ....|...         ++.....+...+..     
T Consensus       293 ~~a~~~~~~----~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~---------~~~~~~k~~~rqv~-----  354 (541)
T KOG4547|consen  293 FLAALFGID----KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK---------LKLVTSKEGKRQVV-----  354 (541)
T ss_pred             hhhhhcccc----hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc---------cceeeeecccceee-----
Confidence            444444321    135667788777766666554332222221 11111111         01111110000000     


Q ss_pred             ccccCCccccchhhhhhccccCCCCccccccccccchhhhhhhh--ccCcccccccCCcCCCHHHHHHhcCCCCCCC---
Q 008041          393 DAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFME--IKDDKVEVEADSQTVCMEDRLRSLGILSNKD---  467 (579)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---  467 (579)
                                 ..+.++...                +..+...+  .++....+...+.|..++.|+.++.......   
T Consensus       355 -----------~n~~~k~~~----------------~~~~q~~~p~~~~l~v~~~~g~iEv~~earl~~l~i~~~~~~~k  407 (541)
T KOG4547|consen  355 -----------LNSVAKLGE----------------AEVIQEEPPLTEDLPVLTKGGDIEVSTEARLSALDINLTSNADK  407 (541)
T ss_pred             -----------cchhhhhcc----------------hhhhcccCcchhcchhhhcCCcceeeehhhhhhcccccccccch
Confidence                       000000000                00000000  0011111234556778888988886654332   


Q ss_pred             CCCCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHh
Q 008041          468 DLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH  538 (579)
Q Consensus       468 ~~~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h  538 (579)
                      ...........+.|+|         .++..++++.|+.|+.|+|+.++.+||+.++++|++++++++.+++|+++++..|
T Consensus       408 ~~~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h  487 (541)
T KOG4547|consen  408 SDESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSH  487 (541)
T ss_pred             hhhhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcc
Confidence            2223345566788888         4778889999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCChhHHHHHHHHHHHHhh
Q 008041          539 GHHLLSQESLTPMLSSLYKVRKKKL  563 (579)
Q Consensus       539 ~~~l~~~~~l~~~l~~l~~~~~~r~  563 (579)
                      ..||+++|+   .++.|+..+++++
T Consensus       488 ~~yl~sv~~---~~~~l~~~~~~~~  509 (541)
T KOG4547|consen  488 NSYLSSVPD---QLETLSGKMQKDL  509 (541)
T ss_pred             cceeecCcc---hhhHHHHHHHHHH
Confidence            999999999   5555555555554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.6e-34  Score=268.40  Aligned_cols=358  Identities=16%  Similarity=0.167  Sum_probs=260.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccc----ccc-ccccceEEeee
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----EHL-SVDYTCMKWLS   75 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~w~~   75 (579)
                      +.++  ....|||.|-|+|+|...|+|||||+....  +..+|+...+++..+.|..+-.+    |.- ..-.....|.+
T Consensus        59 ~~~v--tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS  136 (603)
T KOG0318|consen   59 AHQV--TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS  136 (603)
T ss_pred             ccee--EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence            3456  444999999999999999999999987533  45677778888888888765111    000 11223344543


Q ss_pred             cc------ccc-------ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 008041           76 VD------RKK-------KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC  142 (579)
Q Consensus        76 ~~------~~~-------~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~  142 (579)
                      .+      .+.       .+...+-.+++|+.|+.|.+|+-..-+..... ..|..-|.|+.|+|||..|++++.||++.
T Consensus       137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEE
Confidence            22      000       11123567999999999999997776665444 67999999999999999999999999999


Q ss_pred             EEeCCCCceeeEee---cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE------------------------
Q 008041          143 EIDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------  193 (579)
Q Consensus       143 iwd~~~~~~~~~~~---~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~------------------------  193 (579)
                      +||=.+|+.+..+.   +|++.|.+++|+||++.+++++  .+++|||+.+.+++.                        
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt  295 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT  295 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence            99999999999988   8999999999999999999998  799999997764432                        


Q ss_pred             -------------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc------ee---------
Q 008041          194 -------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------SC---------  239 (579)
Q Consensus       194 -------------------~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~------~~---------  239 (579)
                                         .+.||...|+++..+|++++|++++ .||.|.-|+..++...+.      ..         
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES  374 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCC
Confidence                               4568999999999999999999987 799999999876532100      00         


Q ss_pred             --ee------------------------eeecC-----------------------------------ceeEEeEEecCC
Q 008041          240 --VL------------------------AMEHP-----------------------------------AVFMDCRCIDNG  258 (579)
Q Consensus       240 --~~------------------------~~~~~-----------------------------------~~~~~~~~~~~~  258 (579)
                        ++                        .+.+.                                   .....+++    
T Consensus       375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA----  450 (603)
T KOG0318|consen  375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA----  450 (603)
T ss_pred             CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE----
Confidence              00                        00000                                   00111222    


Q ss_pred             cccCCCcEEEEEEcCCeEEEEEcCCceeecc--cCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCC
Q 008041          259 GVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL  336 (579)
Q Consensus       259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~  336 (579)
                       ++|++..+++|++||.|++|.+..+.....  ...++-.+.... ++|+++    +++++...+.+-++       .-.
T Consensus       451 -v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~----yla~~Da~rkvv~y-------d~~  517 (603)
T KOG0318|consen  451 -VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGA----YLAAGDASRKVVLY-------DVA  517 (603)
T ss_pred             -EcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCc----EEEEeccCCcEEEE-------Ecc
Confidence             349999999999999999999876553221  122222222222 788888    88888875533332       212


Q ss_pred             CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008041          337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                      ..+........|...|.+++|||+..++ +|||-|..+.+|++.+.
T Consensus       518 s~~~~~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  518 SREVKTNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             cCceecceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccCh
Confidence            2223344566799999999999999999 99999999999999754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=249.40  Aligned_cols=274  Identities=14%  Similarity=0.194  Sum_probs=221.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      .-+|+++|.|.+||+|...+|.|..+++...+-++.+...++                           .. .+++....
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~-~LAaa~~q   61 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KK-DLAAAGNQ   61 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cc-hhhhccCC
Confidence            358999999999999999999999999877766666666554                           33 34455567


Q ss_pred             eEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEE
Q 008041           97 DVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA  175 (579)
Q Consensus        97 ~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~  175 (579)
                      .|++||+.+++. ....+.+|+..|+++.|..+|+.+++||.||+++|||++...+-+.+. |..+|+++..+|+...|+
T Consensus        62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence            899999998875 334447899999999999999999999999999999999877666666 668999999999999999


Q ss_pred             EEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-ceeeeeee-cCceeE
Q 008041          176 TAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFM  250 (579)
Q Consensus       176 ~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~  250 (579)
                      +|+  |.|++||+.+..+...+ +....+|.++...|||++++.+. ..|..++|++-..+..+ ...+..+. |....+
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEE
Confidence            998  99999999988766655 34457899999999999998876 68999999997754321 12233333 445555


Q ss_pred             EeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEE
Q 008041          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT  330 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  330 (579)
                      .|. ++     ||+++|++++.|.+++||+.++. ...                                          
T Consensus       220 ~C~-lS-----Pd~k~lat~ssdktv~iwn~~~~-~kl------------------------------------------  250 (311)
T KOG0315|consen  220 RCL-LS-----PDVKYLATCSSDKTVKIWNTDDF-FKL------------------------------------------  250 (311)
T ss_pred             EEE-EC-----CCCcEEEeecCCceEEEEecCCc-eee------------------------------------------
Confidence            555 44     99999999999999999987655 100                                          


Q ss_pred             EEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                 -..+.+|...++.++||.||.|| +++|.|+..++|++.+
T Consensus       251 -----------e~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  251 -----------ELVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLSA  289 (311)
T ss_pred             -----------EEEeecCCceEEeeeeccCccEE-EecCCCCceeeccccc
Confidence                       01445788899999999999999 9999999999999853

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.5e-36  Score=277.09  Aligned_cols=237  Identities=17%  Similarity=0.213  Sum_probs=214.9

Q ss_pred             CCcccceEEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++.|  .++.|+|.  +.-+|+|+.||++++|++.+...+..+.+|...+..+.|+|.                      
T Consensus       217 ~~~v--~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs----------------------  272 (459)
T KOG0272|consen  217 TSRV--GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS----------------------  272 (459)
T ss_pred             ccce--eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC----------------------
Confidence            4556  55599997  569999999999999999999999999999888888888877                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +.+|.+++-|.+-++||+.++..+ ....||..+|.+++|+|||..++||+.|..-++||+++|+++..+.+|..
T Consensus       273 -----G~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k  346 (459)
T KOG0272|consen  273 -----GKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK  346 (459)
T ss_pred             -----Cceeeecccccchhhcccccchhh-HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence                 899999999999999999999876 34489999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      +|.+++|+|+|-.+|+|+  ++++|||++..+.+.++++|.+-|+.+.|+| .|.+|++++ .|+++++|...+..+   
T Consensus       347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~---  422 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSP---  422 (459)
T ss_pred             ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCccc---
Confidence            999999999999999999  8999999999999999999999999999999 677788877 799999999998763   


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                        +..+..+...+-++.++     +|++++++++.|.++++|.
T Consensus       423 --~ksLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  423 --LKSLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --chhhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence              45666666666677777     9999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=251.05  Aligned_cols=287  Identities=18%  Similarity=0.245  Sum_probs=235.5

Q ss_pred             CCcccceEEEEccC-CCEEEEEeCCCcEEEEECC-----CCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041            3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         3 ~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.-|..+  +..+. .+.+.+++.|.++.+|++.     .|..++.+++|...+.....+++                  
T Consensus        15 ~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d------------------   74 (315)
T KOG0279|consen   15 TDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD------------------   74 (315)
T ss_pred             CceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC------------------
Confidence            4556445  55565 4688999999999999764     56778899999888887777776                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                               +++.++++.|+.+++||+.+++...++ .+|...|.+++|++|++.+++|+.|.+|++||.. |.+..++.
T Consensus        75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~  143 (315)
T KOG0279|consen   75 ---------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH  143 (315)
T ss_pred             ---------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence                     889999999999999999999877666 6899999999999999999999999999999975 66666666


Q ss_pred             cC--CCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          157 AS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       157 ~~--~~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      .+  .+.|+|+.|+|+  ..+|++++  +++++||+++.+....+.+|.+.++.+.+||||...++++ .||.+.+||++
T Consensus       144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~  222 (315)
T KOG0279|consen  144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLN  222 (315)
T ss_pred             cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEcc
Confidence            55  679999999998  67888888  8999999999999999999999999999999999999987 89999999999


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccccc
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      .++     +.+.+++.. .+..++|+     |+...|+.+... .|+|||+++...+..+++.....        ..   
T Consensus       223 ~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~--------s~---  279 (315)
T KOG0279|consen  223 EGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGP--------SS---  279 (315)
T ss_pred             CCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccCC-ceEEEeccchhhhhhcccccccc--------cc---
Confidence            987     446666555 45667777     887777776654 59999999888776554221110        00   


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                         ....-...+++||+||..| ++|-.|+.+++|.+.
T Consensus       280 -----------------------------------~~~~~~clslaws~dG~tL-f~g~td~~irv~qv~  313 (315)
T KOG0279|consen  280 -----------------------------------KAGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVA  313 (315)
T ss_pred             -----------------------------------ccCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEee
Confidence                                               0111246889999999999 999999999999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-35  Score=265.24  Aligned_cols=280  Identities=15%  Similarity=0.246  Sum_probs=247.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|..  +-|+|+-..+++++.|++|++||..+|++...+++|...+.++.|...                         
T Consensus       109 ~~vt~--v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~-------------------------  161 (406)
T KOG0295|consen  109 SSVTR--VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS-------------------------  161 (406)
T ss_pred             cceee--eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-------------------------
Confidence            46633  489999999999999999999999999999999998888777777765                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        +.++++++.|-.+++||..+.....+...+|.-.|.+++|-|.|.++++++.|.+|++|++.+|-++.+|.+|...|.
T Consensus       162 --Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr  239 (406)
T KOG0295|consen  162 --GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR  239 (406)
T ss_pred             --ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence              788999999999999999874322244468999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC---------------CCEEEEEecCCCeEEE
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYIAL  226 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~---------------~~~l~s~~~~d~~i~v  226 (579)
                      .++.+.||.++++++  .++++|-+.++++...+..|..+|.+++|.|.               ++++++++ .|++|++
T Consensus       240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk~  318 (406)
T KOG0295|consen  240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIKI  318 (406)
T ss_pred             EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEEE
Confidence            999999999999999  79999999999999999999999999999763               24777776 8999999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccc
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS  306 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (579)
                      ||+.++.     |++++..+...++.+.|+     |.|+||+++..|+++++||+++++.+....               
T Consensus       319 wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---------------  373 (406)
T KOG0295|consen  319 WDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMKTLE---------------  373 (406)
T ss_pred             EeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeeeccC---------------
Confidence            9999986     779999999999999998     999999999999999999998887654332               


Q ss_pred             ccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                              .|...|.++.|..+..++ +|||-|.++++|+-
T Consensus       374 ----------------------------------------ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  374 ----------------------------------------AHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC  405 (406)
T ss_pred             ----------------------------------------CCcceeEEEecCCCCceE-Eeccccceeeeeec
Confidence                                                    456678888888888888 99999999999963

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=245.50  Aligned_cols=242  Identities=17%  Similarity=0.213  Sum_probs=201.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.-|.++  ..++||++.++++.|+++++||+.+|+..+.|.+|...+.++.|+++                        
T Consensus        63 sH~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------------------------  116 (315)
T KOG0279|consen   63 SHFVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------------------------  116 (315)
T ss_pred             ceEecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------------------------
Confidence            3446555  89999999999999999999999999999999999998888888887                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         +..|++|+.|.+|++||+..+.........|.+-|+|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+
T Consensus       117 ---n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~  193 (315)
T KOG0279|consen  117 ---NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG  193 (315)
T ss_pred             ---CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence               8889999999999999998776654443445889999999998  67899999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .++.++++|||.++++|+  |.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+  .+..|+|||+.+......-
T Consensus       194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhc
Confidence            999999999999999999  899999999999987775 88999999999986555544  4677999999987643100


Q ss_pred             eeee----ee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          239 CVLA----ME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       239 ~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ....    .. .....+. .+|+     +||..|++|-.||.|++|.+.
T Consensus       271 ~~d~~g~s~~~~~~~cls-laws-----~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLS-LAWS-----ADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccccccccccCCcEEEE-EEEc-----CCCcEEEeeecCCcEEEEEee
Confidence            0000    01 1223333 4454     899999999999999999753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.7e-35  Score=269.08  Aligned_cols=281  Identities=14%  Similarity=0.179  Sum_probs=231.6

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|..+  .|.|+|+.|++|+..|.+.+|+..+......++.|..+                  ++++.|.+.       
T Consensus        97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~------------------Vr~m~ws~~-------  149 (464)
T KOG0284|consen   97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP------------------VRTMKWSHN-------  149 (464)
T ss_pred             cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc------------------ceeEEEccC-------
Confidence            467555  99999999999999999999997544443334445444                  445555543       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        +..+++|+.+|.|++|++..+... .+...|...|++++|+|+...|++|+.||+|+|||....+..+.+.+|...|.
T Consensus       150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence              889999999999999999877664 23344558999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      |++|+|.-.++++++  +.|++||.+++.++.++.+|+..|..+.|+|++++|+++| .|..++++|+++.+..     +
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl-----~  300 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKEL-----F  300 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHH-----H
Confidence            999999999999999  8999999999999999999999999999999999999998 8999999999965533     4


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      ....+...+..+.|.+    -....+.+|+.||.|..|.+...+.+...                               
T Consensus       301 ~~r~Hkkdv~~~~WhP----~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-------------------------------  345 (464)
T KOG0284|consen  301 TYRGHKKDVTSLTWHP----LNESLFTSGGSDGSVVHWVVGLEEPLGEI-------------------------------  345 (464)
T ss_pred             Hhhcchhhheeecccc----ccccceeeccCCCceEEEeccccccccCC-------------------------------
Confidence            4555555556666652    24578888999999999987622221111                               


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                             -.+|...|++++|.|=|..| ++||.|+++++|..
T Consensus       346 -----------------------~~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  346 -----------------------PPAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR  379 (464)
T ss_pred             -----------------------CcccccceeeeeccccceeE-eecCCCcceeeecc
Confidence                                   11688899999999999999 99999999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-33  Score=277.00  Aligned_cols=343  Identities=17%  Similarity=0.211  Sum_probs=281.1

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +|  .|++-+||.-+||.|..||.|+||+..++....+|.+|...++.+.|...                          
T Consensus        67 ev--t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~--------------------------  118 (888)
T KOG0306|consen   67 EV--TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI--------------------------  118 (888)
T ss_pred             eE--EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence            55  44477788889999999999999999999999999999888887777766                          


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--------
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--------  156 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------  156 (579)
                       +..+++|+.|+.|.+||+-......++ .||.+.|+..-|..+.+++++++.|+.|++||+.+..++.+.-        
T Consensus       119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~  196 (888)
T KOG0306|consen  119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA  196 (888)
T ss_pred             -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence             889999999999999999988777777 7899999999999888899999999999999998765543321        


Q ss_pred             --------------------------------------------------------------------------------
Q 008041          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~  276 (888)
T KOG0306|consen  197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK  276 (888)
T ss_pred             EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 008041          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~  356 (888)
T KOG0306|consen  277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK  356 (888)
T ss_pred             HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence                                                                                            


Q ss_pred             --------------cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe--------------------------
Q 008041          157 --------------ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF--------------------------  195 (579)
Q Consensus       157 --------------~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~--------------------------  195 (579)
                                    +|...|.+++++.+...+++|+ +.|++|+..+.++++++                          
T Consensus       357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel  436 (888)
T KOG0306|consen  357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGEL  436 (888)
T ss_pred             CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCce
Confidence                          4666788889998888888887 89999999887766532                          


Q ss_pred             --------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc--ccceeeeeeecC-----ceeEEeEE
Q 008041          196 --------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK--QSASCVLAMEHP-----AVFMDCRC  254 (579)
Q Consensus       196 --------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~-----~~~~~~~~  254 (579)
                                    +.|.+.|.+++.+||++.++++| .|++|++||..-...  .....+..+.|.     ...+.|+.
T Consensus       437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             EEEEeehhhhhhhhhccccceeeeeecCCCCceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence                          35889999999999999999998 799999999743221  001111222221     23345677


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEe
Q 008041          255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY  334 (579)
Q Consensus       255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  334 (579)
                      ++     |||++|+++-.|++++||-+++.+...++.+++..+.|++ .+++++    .|++|+.|..++.        |
T Consensus       516 ~S-----pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD-IS~DSk----livTgSADKnVKi--------W  577 (888)
T KOG0306|consen  516 VS-----PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD-ISPDSK----LIVTGSADKNVKI--------W  577 (888)
T ss_pred             Ec-----CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe-ccCCcC----eEEeccCCCceEE--------e
Confidence            77     9999999999999999999999999999999999999988 688888    9999999987766        7


Q ss_pred             CCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccC
Q 008041          335 GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLP  397 (579)
Q Consensus       335 g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~  397 (579)
                      |.....|.+.+-+|...|+++.|-|+..+. .|+|.|+.+|.|+..+-  +..++....+-..+.
T Consensus       578 GLdFGDCHKS~fAHdDSvm~V~F~P~~~~F-Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa  641 (888)
T KOG0306|consen  578 GLDFGDCHKSFFAHDDSVMSVQFLPKTHLF-FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA  641 (888)
T ss_pred             ccccchhhhhhhcccCceeEEEEcccceeE-EEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence            777888888899999999999999988888 99999999999987543  666765555444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.8e-34  Score=255.46  Aligned_cols=284  Identities=14%  Similarity=0.210  Sum_probs=242.3

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      =||++  ++.|-.++|++|+.|++++|||+.+|++..++.+|-..+..+.+++.                          
T Consensus       153 WVr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r--------------------------  204 (460)
T KOG0285|consen  153 WVRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR--------------------------  204 (460)
T ss_pred             eEEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc--------------------------
Confidence            36555  99999999999999999999999999999999999888887777765                          


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                       ..++++++.|+.|+.||+..++.+..+ .||-+.|.|++.+|.-..+++|+.|.++++||+++...+..+.+|..+|.+
T Consensus       205 -HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~  282 (460)
T KOG0285|consen  205 -HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS  282 (460)
T ss_pred             -CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence             788999999999999999999999776 689999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +.+.|-...+++|+  ++|++||++.|+...++..|...|.+++.+|....|++++ .| .|+-|++..+...     ..
T Consensus       283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~n  355 (460)
T KOG0285|consen  283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----QN  355 (460)
T ss_pred             EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----hc
Confidence            99999888999998  8999999999999999999999999999999988888876 44 5999999988643     34


Q ss_pred             eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccce
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      +..+..++..+...      +..++++|+.+|.+.+||.+++-..+....                    .+.-|+.+  
T Consensus       356 lsgh~~iintl~~n------sD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------~vqpGSl~--  407 (460)
T KOG0285|consen  356 LSGHNAIINTLSVN------SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------IVQPGSLE--  407 (460)
T ss_pred             cccccceeeeeeec------cCceEEEcCCceEEEEEecCcCcccccccc--------------------cccCCccc--
Confidence            55666777777764      456788999999999999988755432211                    11112221  


Q ss_pred             ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                               .+..|.+.+|...|..| ++|..|++|++|.-
T Consensus       408 -------------------------sEagI~as~fDktg~rl-it~eadKtIk~~ke  438 (460)
T KOG0285|consen  408 -------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKE  438 (460)
T ss_pred             -------------------------cccceeEEeecccCceE-EeccCCcceEEEec
Confidence                                     12357777888889999 99999999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8e-34  Score=281.60  Aligned_cols=238  Identities=14%  Similarity=0.216  Sum_probs=207.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-------------------------------EEEeccCccccccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-------------------------------QTEFADIASTETTSLYGN   57 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   57 (579)
                      .|+.||+|+..||.|-.|..|++|.+...++                               ..++.+|.++|....|+|
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            6779999999999999999999999874321                               112334444444444444


Q ss_pred             cccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC
Q 008041           58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA  137 (579)
Q Consensus        58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  137 (579)
                      +                           .++|++++.|++|++|.+.+..++..+ .||..||+++.|+|.|.||+|+|.
T Consensus       462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             c---------------------------ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence            3                           789999999999999999999988666 699999999999999999999999


Q ss_pred             CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       138 d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      |++-++|.....++.+.|.+|-+.|.|+.|+|++.++++|+  .++++||+.+|..++.|.||.++|.+++|+|+|++|+
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence            99999999999999999999999999999999999999999  8999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      +++ .|+.|++||+.++...     ..+..+...+..+.|+     .+|..||+|+.|++|++||+....
T Consensus       594 Sg~-ed~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  594 SGD-EDGLIKIWDLANGSLV-----KQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ecc-cCCcEEEEEcCCCcch-----hhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence            987 7999999999998744     2333446777888888     999999999999999999976543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.3e-33  Score=245.54  Aligned_cols=283  Identities=14%  Similarity=0.191  Sum_probs=232.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+.|  .++.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+++..+.|..+                       
T Consensus        47 ~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-----------------------  101 (338)
T KOG0265|consen   47 KGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-----------------------  101 (338)
T ss_pred             cceE--EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence            4677  666999999999999999999999954 34445667788887777766666                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          ++.+++++.|.+|+.||+++|+.+.+. ++|.+-|+++.-+.-|.. +.+++.|+++++||+++...++++. .+.
T Consensus       102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky  175 (338)
T KOG0265|consen  102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY  175 (338)
T ss_pred             ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence                888999999999999999999999777 689999999986555554 6788899999999999999888876 356


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      +++++.|..++..+.+|+  +.|++||++.+....++.||..+|+.+..+|+|.++.+-+ .|.++++||++.-... .+
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R  253 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR  253 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence            899999999999999999  8999999999999999999999999999999999999987 7999999999875433 22


Q ss_pred             eeeeee--cCceeEEe--EEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          239 CVLAME--HPAVFMDC--RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       239 ~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      ++..+.  .+......  ..|+     |++..+.+|+.|..+++||..+...+.                          
T Consensus       254 ~v~if~g~~hnfeknlL~csws-----p~~~~i~ags~dr~vyvwd~~~r~~ly--------------------------  302 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWS-----PNGTKITAGSADRFVYVWDTTSRRILY--------------------------  302 (338)
T ss_pred             eEEEeecchhhhhhhcceeecc-----CCCCccccccccceEEEeecccccEEE--------------------------
Confidence            333222  22222222  2333     999999999999999999864433221                          


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                   ++.||...|.++.|.|...+| .+++.|+++++-++
T Consensus       303 -----------------------------klpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei  337 (338)
T KOG0265|consen  303 -----------------------------KLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI  337 (338)
T ss_pred             -----------------------------EcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence                                         455888899999999999999 99999999887654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-32  Score=267.17  Aligned_cols=322  Identities=16%  Similarity=0.182  Sum_probs=265.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      .++.||.|.++|++|+.|-+++||++...+-  ...+.+|...+....|..+                           .
T Consensus       149 ~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---------------------------~  201 (893)
T KOG0291|consen  149 TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---------------------------S  201 (893)
T ss_pred             eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC---------------------------c
Confidence            5669999999999999999999999886654  5667777777776666655                           5


Q ss_pred             cEEEEEECCCeEEEEEccC-----------------------CeE-----E-----EEecCCCCCCEEEEEEccCCCEEE
Q 008041           87 SLLVLGTGGGDVLALAVSA-----------------------GQL-----K-----WRLSDCHPGGVSAISFATHGSCIY  133 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~-----------------------~~~-----~-----~~~~~~h~~~V~~l~~~~~~~~l~  133 (579)
                      .-+++.+.||.+.+|....                       ++.     .     ..++......|++.+||+..+.++
T Consensus       202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv  281 (893)
T KOG0291|consen  202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV  281 (893)
T ss_pred             ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence            5689999999999998871                       111     1     112233347899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecC
Q 008041          134 SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN  210 (579)
Q Consensus       134 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~  210 (579)
                      +|-..|...+|++....+++.+.-...+|..++|+..|..+|.|+   |++.||+.++..-+.+.++|...+++++++||
T Consensus       282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD  361 (893)
T KOG0291|consen  282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD  361 (893)
T ss_pred             EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence            999999999999999999999888888999999999999999998   79999999999889999999999999999999


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      |+++++|+ +||.|+|||..++-     |..++..|...+..+.|.     ..|+.+++.+.||+|+.||+...+..+++
T Consensus       362 gq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  362 GQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             CcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeecccceeeee
Confidence            99999998 79999999999876     778888888888889998     89999999999999999999998888876


Q ss_pred             CCeeEE-eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008041          291 KATKIL-SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (579)
Q Consensus       291 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s  369 (579)
                      ..+.+. .+|.. ..|.+.    .+.+|+.|.    ++..+|   ........+.+.||+++|.+++|+|+|..| +|+|
T Consensus       431 t~P~p~Qfscva-vD~sGe----lV~AG~~d~----F~IfvW---S~qTGqllDiLsGHEgPVs~l~f~~~~~~L-aS~S  497 (893)
T KOG0291|consen  431 TSPEPIQFSCVA-VDPSGE----LVCAGAQDS----FEIFVW---SVQTGQLLDILSGHEGPVSGLSFSPDGSLL-ASGS  497 (893)
T ss_pred             cCCCceeeeEEE-EcCCCC----EEEeeccce----EEEEEE---EeecCeeeehhcCCCCcceeeEEccccCeE-Eecc
Confidence            644433 22222 223333    666666653    232233   234566778899999999999999999999 9999


Q ss_pred             ceecccceeeee
Q 008041          370 LLKSKRGRYVQN  381 (579)
Q Consensus       370 ~d~~~~~w~~~~  381 (579)
                      .|+++|+|++-.
T Consensus       498 WDkTVRiW~if~  509 (893)
T KOG0291|consen  498 WDKTVRIWDIFS  509 (893)
T ss_pred             ccceEEEEEeec
Confidence            999999999853

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=240.87  Aligned_cols=232  Identities=17%  Similarity=0.280  Sum_probs=205.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCC------eEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.|+|+|.|+++|+|+-|+...||++.+.      +..+++.+|.+.+.+..|..                         
T Consensus       101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-------------------------  155 (343)
T KOG0286|consen  101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-------------------------  155 (343)
T ss_pred             EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-------------------------
Confidence            78999999999999999999999999855      34556666665555444433                         


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         ...|++++.|.+.-+||+.+++.+..+ .+|.+.|.++.++| +++.|++|+-|+..++||++.+.++++|.+|+..
T Consensus       156 ---D~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD  231 (343)
T KOG0286|consen  156 ---DNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD  231 (343)
T ss_pred             ---CCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence               456999999999999999999998766 79999999999999 9999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      |++++|.|+|.-+++|+  ++.++||++..+.+..+...  ..+|++++|+..|++|+++. .|.++.+||.-.++.   
T Consensus       232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~---  307 (343)
T KOG0286|consen  232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGER---  307 (343)
T ss_pred             cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccce---
Confidence            99999999999999999  89999999999998888632  36899999999999999886 799999999887763   


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                        +-.+..|+..++++..+     |||..+++|+.|.+++||.
T Consensus       308 --vg~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  308 --VGVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             --EEEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence              35666888889999998     9999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.3e-32  Score=278.02  Aligned_cols=280  Identities=23%  Similarity=0.332  Sum_probs=230.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..|  .++.|||+|+++++++.|+.+++|+..+++  ...++.+|...+..+.|+++                       
T Consensus       160 ~sv--~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-----------------------  214 (456)
T KOG0266|consen  160 PSV--TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-----------------------  214 (456)
T ss_pred             Cce--EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-----------------------
Confidence            456  556999999999999999999999998877  66666677766666666665                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          +.++++++.|++|++||+.. +..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|..
T Consensus       215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             ----CcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence                77899999999999999944 4566555 69999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      +|++++|+++|+++++++  +.|++||+.++.  ++..+.++..+  ++++.|+|++.++++++ .|+.+++||+.....
T Consensus       290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~  368 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKS  368 (456)
T ss_pred             ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcc
Confidence            999999999999999998  999999999998  56778777665  99999999999999987 799999999998764


Q ss_pred             ccceeeeeeecCce--eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041          235 QSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      .   ..+ ..|...  .+.....     .+++.++++|+.|+.|++||..++..+..                       
T Consensus       369 ~---~~~-~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~~-----------------------  416 (456)
T KOG0266|consen  369 V---GTY-TGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQR-----------------------  416 (456)
T ss_pred             e---eee-cccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhhh-----------------------
Confidence            3   111 123322  2222222     38999999999999999999877554322                       


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecccc--ceecccceee
Q 008041          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~  379 (579)
                                                      +.+| ...+..++++|...++ ++++  .|+.+++|..
T Consensus       417 --------------------------------l~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  417 --------------------------------LEGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY  453 (456)
T ss_pred             --------------------------------hcCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence                                            2345 5567788888888888 7776  6888888864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.9e-32  Score=250.97  Aligned_cols=339  Identities=17%  Similarity=0.204  Sum_probs=257.6

Q ss_pred             CCCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  ++++|+|-.. .+|+|+.|-..++|++....-..+.    ..+....+............+|++.|+..    
T Consensus       177 ~~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~----  246 (524)
T KOG0273|consen  177 HESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----QLVLRHCIREGGKSVPSNKDVTSLDWNND----  246 (524)
T ss_pred             CCCce--EEEecCchhhhhhhccCCccceeeeeehhhccccch----hhhhhhhhhhhcccCCccCCcceEEecCC----
Confidence            35778  8999999776 8999999999999998751111000    00000111101011233568999999875    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +++|++|+.+|.+++|+...+..  ..+..|.+||.++.|+..|.||++++.|+++.+||..+|...+.|.-|..
T Consensus       247 -----G~~LatG~~~G~~riw~~~G~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~  319 (524)
T KOG0273|consen  247 -----GTLLATGSEDGEARIWNKDGNLI--STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA  319 (524)
T ss_pred             -----CCeEEEeecCcEEEEEecCchhh--hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence                 88999999999999999875544  33467999999999999999999999999999999999999999998888


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      +-..+.|-.+. -+++++  +.|+|+.+....++.++.+|.++|.++.|.|.|..|++++ .|+++++|+......    
T Consensus       320 ~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~----  393 (524)
T KOG0273|consen  320 PALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNS----  393 (524)
T ss_pred             CccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcc----
Confidence            87788998655 455555  8999999999999999999999999999999999999987 799999999776542    


Q ss_pred             eeeeeecCceeEEeEEecCCc-c--c-CCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          239 CVLAMEHPAVFMDCRCIDNGG-V--D-DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                       ...+..+...+..+.|++.. .  . -++..+++++.|++|++||+..+.++..+..+...+.+.. |+|+++    ++
T Consensus       394 -~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~----yl  467 (524)
T KOG0273|consen  394 -VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR----YL  467 (524)
T ss_pred             -hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc----EE
Confidence             23344455445555555321 1  1 2356899999999999999999999988766666666655 789988    99


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      ++|++++.+.++.        ...+..++...+.. .|..++|+.+|.+|.++. .|+.+.+-++
T Consensus       468 AsGs~dg~V~iws--------~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~-sd~~vcvldl  522 (524)
T KOG0273|consen  468 ASGSLDGCVHIWS--------TKTGKLVKSYQGTG-GIFELCWNAAGDKLGACA-SDGSVCVLDL  522 (524)
T ss_pred             EecCCCCeeEecc--------ccchheeEeecCCC-eEEEEEEcCCCCEEEEEe-cCCCceEEEe
Confidence            9999988766533        34445555555444 589999999999994444 4888877654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-32  Score=272.72  Aligned_cols=201  Identities=19%  Similarity=0.329  Sum_probs=190.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++||  ..+.|+|+.++|++||.|+++|+|.+.+..+...+++|..++..+.|+|.                       
T Consensus       450 H~GPV--yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-----------------------  504 (707)
T KOG0263|consen  450 HSGPV--YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-----------------------  504 (707)
T ss_pred             CCCce--eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------------------
Confidence            57999  66699999999999999999999999999999999999999999989876                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +-++++++.|++-++|........ +++.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.|.+|.++
T Consensus       505 ----GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  505 ----GYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP  579 (707)
T ss_pred             ----ceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence                788999999999999999987776 445789999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      |.+++|+|+|++|++|+  |.|.+||+.+++.+..+.+|++.|.++.|+.+|..|+++| .|++|++||+....
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI  652 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence            99999999999999999  9999999999999999999999999999999999999998 79999999987654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-31  Score=230.18  Aligned_cols=251  Identities=18%  Similarity=0.292  Sum_probs=208.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.|+.+  ..+||+++||+++. ..||+||+.++.  .+.+|.+|...+..+.|..+                      
T Consensus        40 dsqVNrL--eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----------------------   94 (311)
T KOG0315|consen   40 DSQVNRL--EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----------------------   94 (311)
T ss_pred             ccceeeE--EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence            4678777  99999999999985 579999999876  58889988888877777766                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-AST  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~  159 (579)
                           +...++|+.||.++|||++.-.+...+  .|.++|+++..+|+...|++|..+|.|++||+.+..+...+- ...
T Consensus        95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence                 889999999999999999996665443  488999999999999999999999999999999887666543 344


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCC------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ..|.++.+.|||++++.+.  |..++|++-+.      +++.+++.|.+-+..+.+|||+++|++++ .|.+++||+.+.
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~  246 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDD  246 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCC
Confidence            5999999999999999998  99999998764      45677899999999999999999999998 699999999988


Q ss_pred             CccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041          232 VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      .-+    ....+..+ .....| .|+     .||.||++++.|+.+++|++..++.++...++...
T Consensus       247 ~~k----le~~l~gh~rWvWdc-~FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  247 FFK----LELVLTGHQRWVWDC-AFS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             cee----eEEEeecCCceEEee-eec-----cCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence            721    12333344 444444 455     79999999999999999999999988776665443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-32  Score=260.15  Aligned_cols=248  Identities=15%  Similarity=0.253  Sum_probs=219.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|+++  .|+|...+++++-..|.|.|||.++...+..|.-..-++....|-..                        
T Consensus        13 SdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR------------------------   66 (794)
T KOG0276|consen   13 SDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR------------------------   66 (794)
T ss_pred             CCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec------------------------
Confidence            4557555  99999999999999999999999999999988766655555444333                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         .+.+++|+.|..|++|+..+++.+..+ .+|.+-|.+++.||...+++++|.|-+|++||.+.. .+.++|.+|...
T Consensus        67 ---knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy  142 (794)
T KOG0276|consen   67 ---KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY  142 (794)
T ss_pred             ---cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence               678999999999999999999998776 789999999999999999999999999999998754 788999999999


Q ss_pred             eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC--CEEEEEecCCCeEEEEEcCCCcccc
Q 008041          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       162 v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      |.+++|+| |.+.+++++  ++|++|.+.+..+..++.+|...|+++.|-+.|  .||++++ +|.+|+|||.++..   
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~---  218 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS---  218 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH---
Confidence            99999999 667899998  999999999999999999999999999998754  6999987 79999999999865   


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                        |+.++..+...++.++|.     |.=..+++|++||+++||+..|.++...+.
T Consensus       219 --CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  219 --CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             --HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhhhh
Confidence              778888888888999997     888999999999999999988887655443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.3e-30  Score=252.47  Aligned_cols=280  Identities=23%  Similarity=0.310  Sum_probs=231.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++|++++.||.|++|+..+++....+..+...+.                  .+.|.+.     
T Consensus         8 h~~~i--~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~-----   62 (289)
T cd00200           8 HTGGV--TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------------------DVAASAD-----   62 (289)
T ss_pred             cCCCE--EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee------------------EEEECCC-----
Confidence            45788  5559999999999999999999999998887776665544333                  3444432     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++++.+|.|++||+.+++.+..+ ..|...|.++.|+|+++++++++.|+.|++||+.+++....+..|...
T Consensus        63 ----~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 ----GTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             ----CCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence                567999999999999999987766555 578889999999999888888888999999999989999999989999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      +.+++|+|++.++++++  +.|++||+++++.+..+..|...+.++.|+|+++.+++++ .|+.|++||+...+..    
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~----  212 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL----  212 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee----
Confidence            99999999999999886  8999999999999999999999999999999999898887 5999999999876533    


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                       .....+...+..+.++     |++.++++++.||.+++||..+++.+.                               
T Consensus       213 -~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~-------------------------------  255 (289)
T cd00200         213 -GTLRGHENGVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ-------------------------------  255 (289)
T ss_pred             -cchhhcCCceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence             3332334456667776     888888888889999999986543221                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                              .+..|...+.+++|+|+|.++ ++++.|+.+++|+
T Consensus       256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~  289 (289)
T cd00200         256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD  289 (289)
T ss_pred             ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence                                    112455678999999999999 9999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.2e-30  Score=286.72  Aligned_cols=304  Identities=16%  Similarity=0.177  Sum_probs=228.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++.|  .+++|+|+|++||+|+.|+.|+|||..+.....  .....++.  .     ..+  ...+.++.|.+..     
T Consensus       483 ~~~V--~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~~~--~-----~~~--~~~v~~l~~~~~~-----  544 (793)
T PLN00181        483 SNLV--CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYPVV--E-----LAS--RSKLSGICWNSYI-----  544 (793)
T ss_pred             CCcE--EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccceE--E-----ecc--cCceeeEEeccCC-----
Confidence            4567  556999999999999999999999975421000  00000000  0     001  2356678887764     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         +.++++++.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..
T Consensus       545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence               567999999999999999999887665 68999999999997 7889999999999999999999988888754 67


Q ss_pred             eeEEEEc-cCCCEEEEEC--CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-c
Q 008041          162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S  236 (579)
Q Consensus       162 v~~l~~~-p~g~~l~~~~--~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-~  236 (579)
                      +.++.|+ ++|.++++|+  |.|++||+++++ .+..+.+|...|.++.|. ++.++++++ .|++|++||+...... .
T Consensus       620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence            8999995 5799999998  899999998865 567788999999999997 677888887 7999999999754211 1


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      ...+..+..+...+.++.++     |++.+|++|+.||.|++|+......+....           +.....     +  
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~--  754 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V--  754 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence            12345555666667778887     899999999999999999975543221110           000000     0  


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                       .+.       ....|...|.+++|+|+|..+ ++|+.|+.+++|++
T Consensus       755 -----------------~~~-------~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~  792 (793)
T PLN00181        755 -----------------SGL-------EVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM  792 (793)
T ss_pred             -----------------ccc-------ccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence                             000       112355679999999999999 99999999999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-31  Score=230.31  Aligned_cols=247  Identities=14%  Similarity=0.125  Sum_probs=189.1

Q ss_pred             ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008041          112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (579)
Q Consensus       112 ~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~  187 (579)
                      +..+|...|.+++|+|.|++|+++|.|.++.||.-..  .+++.++.+|+..|.|++|+++|++||+++  .+|.+|.+.
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            3367999999999999999999999999999998553  378889999999999999999999999999  799999987


Q ss_pred             CC---eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC
Q 008041          188 DH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       188 ~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .+   +++..+++|...|..+.|+|....|++++ .|++|++|.-..+.  ...++.++..+...+-++.|.     +.|
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G  207 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIG  207 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCC
Confidence            54   56788899999999999999999999988 79999999877422  245778888777777788887     899


Q ss_pred             cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE
Q 008041          265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK  344 (579)
Q Consensus       265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (579)
                      ..|++++.|++++||-..+.-... +......+.    +.   +   ..|++++.|+.++++... ....+.......+.
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~~~~~~-~sr~~Y~v~----W~---~---~~IaS~ggD~~i~lf~~s-~~~d~p~~~l~~~~  275 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYTDLSGM-HSRALYDVP----WD---N---GVIASGGGDDAIRLFKES-DSPDEPSWNLLAKK  275 (312)
T ss_pred             ceEEEecCCcceEeeeeccCcchh-cccceEeee----ec---c---cceEeccCCCEEEEEEec-CCCCCchHHHHHhh
Confidence            999999999999999754321111 111111111    11   1   278888887765554322 00011111122234


Q ss_pred             EecCCCCcEEEeecCC-cceeeccccceecccceee
Q 008041          345 ILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       345 ~~~h~~~v~~~~~s~d-g~~l~~s~s~d~~~~~w~~  379 (579)
                      -..|...|.++.|.|. ...| +|||.||.+++|++
T Consensus       276 ~~aHe~dVNsV~w~p~~~~~L-~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  276 EGAHEVDVNSVQWNPKVSNRL-ASGGDDGIVNFWEL  310 (312)
T ss_pred             hcccccccceEEEcCCCCCce-eecCCCceEEEEEe
Confidence            4569999999999996 4566 99999999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.6e-31  Score=239.91  Aligned_cols=324  Identities=14%  Similarity=0.112  Sum_probs=259.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.+|  .+++.+|+.+++|||+.|..-.||+..+|....++.+|...+.+..|+.+                       
T Consensus        63 H~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-----------------------  117 (399)
T KOG0296|consen   63 HTDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-----------------------  117 (399)
T ss_pred             cCCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-----------------------
Confidence            45678  77799999999999999999999999999999999999988888888777                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+|++|..+|.|+||...++...+.+. +....+.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.+|..+
T Consensus       118 ----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  118 ----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ----ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence                8999999999999999999999988875 34567888999999999999999999999999998888999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc-
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA-  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~-  237 (579)
                      +++=.|.|+|+.++++.  |+|++||..+++++.++.+. .....++.++..+..++.+. .++.+++-+..+++.... 
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEec
Confidence            99999999999999998  99999999999998888633 34567788888887777766 688888887777653310 


Q ss_pred             -----eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee--cccCCeeEEeeeccCCccccccc
Q 008041          238 -----SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       238 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                           .......+....+..+.++     ..=...|+|+.||+|-|||....+..  ..++.......    |-+ .+  
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~----w~~-t~--  339 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK----WLN-TD--  339 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE----EcC-cc--
Confidence                 0000112223333444444     44467888999999999998766433  22322222221    233 33  


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                        ++++++.+|.++.+|        .....+.-.+.||...|.+++.+||++++ +|+|.|++.++.++
T Consensus       340 --~l~t~c~~g~v~~wD--------aRtG~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  340 --YLLTACANGKVRQWD--------ARTGQLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV  397 (399)
T ss_pred             --hheeeccCceEEeee--------ccccceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence              899999999888755        45566667889999999999999999999 99999999998876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-32  Score=248.41  Aligned_cols=284  Identities=17%  Similarity=0.194  Sum_probs=222.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +..|  +.+.||++|+|||+++.|.+..||++..-.   ...++.+|..++.-                  +.|.|.   
T Consensus       224 tdEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~y------------------i~wSPD---  280 (519)
T KOG0293|consen  224 TDEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSY------------------IMWSPD---  280 (519)
T ss_pred             CCcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEE------------------EEECCC---
Confidence            4567  778999999999999999999999875433   35666666655554                  444443   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                            .+++++|+.+..+.+||+.+|++...+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++-.
T Consensus       281 ------dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr  353 (519)
T KOG0293|consen  281 ------DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVR  353 (519)
T ss_pred             ------CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccc
Confidence                  67899999999999999999999877766777899999999999999999999999999974 66666666544


Q ss_pred             C-CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          160 K-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       160 ~-~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      . .|.+++.++||+++++.+  ..|++|+..+........ ...+|+++..|.|++++++.- .+..+++||+...+...
T Consensus       354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~  431 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVR  431 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHH
Confidence            3 699999999999988877  899999988765544333 457899999999999988865 79999999999665331


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                         -+.-......+--.||..    .+..++++||+|+.|+||+..+++.+.                            
T Consensus       432 ---kY~Ghkq~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgkll~----------------------------  476 (519)
T KOG0293|consen  432 ---KYFGHKQGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGKLLA----------------------------  476 (519)
T ss_pred             ---HhhcccccceEEEeccCC----CCcceEEecCCCceEEEEEccCCceeE----------------------------
Confidence               011111122222334431    466899999999999999987776542                            


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                 .+.||...|.+++|+|......+|+|+|+++|+|...
T Consensus       477 ---------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  477 ---------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ---------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence                                       3457888999999999887655999999999999653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.3e-30  Score=222.63  Aligned_cols=246  Identities=17%  Similarity=0.331  Sum_probs=207.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|+.+  .|+-||+|.++|+.|.+|++|+...|.++.++.+|...+.....+.+                       
T Consensus        16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-----------------------   70 (307)
T KOG0316|consen   16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-----------------------   70 (307)
T ss_pred             cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence            35889555  99999999999999999999999999999999999988877666555                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~  159 (579)
                          +..+++|+.|..|.+||+.+|+...++ .+|.+.|+.+.|+.+...+++|+-|.++++||.++.  ++++.+....
T Consensus        71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence                677999999999999999999999777 789999999999999999999999999999999865  6888888888


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ..|.++.++  +..+++|+  |+++.||++.|+.....-+  .||+++.|++|++..++++ -|+++++.|-.+++... 
T Consensus       146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~-  219 (307)
T KOG0316|consen  146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLK-  219 (307)
T ss_pred             CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccceeeecccchhHHHH-
Confidence            899999986  56778887  9999999999987766554  4799999999999998887 69999999999987541 


Q ss_pred             eeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041          238 SCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       238 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                        .+ ..|.  +..+.|. +.     ....++++|++||.+++||+....++..+.-
T Consensus       220 --sY-kGhkn~eykldc~-l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  220 --SY-KGHKNMEYKLDCC-LN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             --Hh-cccccceeeeeee-ec-----ccceeEEeccCCceEEEEEeccceeeeeecc
Confidence              11 1222  2333333 33     5668899999999999999998887765543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=2.6e-32  Score=245.27  Aligned_cols=277  Identities=16%  Similarity=0.227  Sum_probs=226.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|  .|+.|  |...+++|..|++|+|||..+-.+...+.+|.+.+.++.|.                          
T Consensus       197 skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------------------------  246 (499)
T KOG0281|consen  197 SKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------------------------  246 (499)
T ss_pred             CCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--------------------------
Confidence            4556  55566  55689999999999999999999999999988887766664                          


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST  159 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~  159 (579)
                         ...|++|+.|.+|++||+++|+.+..+ -+|...|..+.|+  +.++++++.|.++.+||+....   +.+.+.+|.
T Consensus       247 ---~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             ---ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence               457899999999999999999998766 4799999999995  4589999999999999998654   334578899


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ..|+.+.|+  .+++++++  .+|++|++.+++.++++.+|...|.|+.+.  ++++++|+ .|.+|++||+..+..   
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~c---  392 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC---  392 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccHH---
Confidence            999999997  56999888  799999999999999999999999988874  77888877 699999999999874   


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhc
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                        ...++.++..+.++-|       |.+.+++|..||+|++||+.++..-+..               .+.         
T Consensus       393 --LRvLeGHEeLvRciRF-------d~krIVSGaYDGkikvWdl~aaldpra~---------------~~~---------  439 (499)
T KOG0281|consen  393 --LRVLEGHEELVRCIRF-------DNKRIVSGAYDGKIKVWDLQAALDPRAP---------------AST---------  439 (499)
T ss_pred             --HHHHhchHHhhhheee-------cCceeeeccccceEEEEecccccCCccc---------------ccc---------
Confidence              4567788889999988       4588999999999999998776432111               000         


Q ss_pred             cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                            -++..+..|.+.|..+.|  |...+ +++++|.+|-+|+.-|
T Consensus       440 ----------------------~Cl~~lv~hsgRVFrLQF--D~fqI-vsssHddtILiWdFl~  478 (499)
T KOG0281|consen  440 ----------------------LCLRTLVEHSGRVFRLQF--DEFQI-ISSSHDDTILIWDFLN  478 (499)
T ss_pred             ----------------------hHHHhhhhccceeEEEee--cceEE-EeccCCCeEEEEEcCC
Confidence                                  111133457778888777  55667 9999999999999854

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=8.8e-32  Score=239.74  Aligned_cols=284  Identities=20%  Similarity=0.292  Sum_probs=224.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -|..|||||+||++|+.||-|.|||..+|+....++-.....    |      -....++.|+.|...         ..+
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~----f------MMmd~aVlci~FSRD---------sEM  277 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN----F------MMMDDAVLCISFSRD---------SEM  277 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc----e------eecccceEEEeeccc---------HHH
Confidence            455999999999999999999999999998765443110000    0      000223444444332         778


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++|+.||.|++|.+.+|.++.++..+|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..|++|...|+...|+
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      +||..+++++  |+|++|+..+.+++.+|+  +...+|+++..-|.+ ..++.+. ..++|++.++...-..+    +..
T Consensus       358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVrs----fsS  432 (508)
T KOG0275|consen  358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVRS----FSS  432 (508)
T ss_pred             CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEee----ecc
Confidence            9999999998  999999999999999885  345678888777754 4666665 68899999987653221    111


Q ss_pred             e--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041          244 E--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       244 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      +  ..+..+. .+.+     |.|.++.+.++|+.++.|...+|+.-+                                 
T Consensus       433 GkREgGdFi~-~~lS-----pkGewiYcigED~vlYCF~~~sG~LE~---------------------------------  473 (508)
T KOG0275|consen  433 GKREGGDFIN-AILS-----PKGEWIYCIGEDGVLYCFSVLSGKLER---------------------------------  473 (508)
T ss_pred             CCccCCceEE-EEec-----CCCcEEEEEccCcEEEEEEeecCceee---------------------------------
Confidence            1  2233443 3344     999999999999999999876665421                                 


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                            ++..|...++.++-.|..++| +|-|+|+.+++|.
T Consensus       474 ----------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk  507 (508)
T KOG0275|consen  474 ----------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK  507 (508)
T ss_pred             ----------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence                                  334566677888888888888 9999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=7.5e-29  Score=234.73  Aligned_cols=321  Identities=14%  Similarity=0.138  Sum_probs=242.2

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCccccccccccccccccccccccceEEeeecccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      =|+++  .|||||.+||+++.||++.+||-.+|+.+.++.   .|.+.+.                  .+.|.|.     
T Consensus       192 FV~~V--RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf------------------alsWsPD-----  246 (603)
T KOG0318|consen  192 FVNCV--RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF------------------ALSWSPD-----  246 (603)
T ss_pred             ceeeE--EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE------------------EEEECCC-----
Confidence            36444  999999999999999999999999999999987   4544444                  4555544     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                          +..+++++.|.+++|||+.+++++.++..+..  +.-.++-|-  +..|++.+.+|++..++....+....+.+|.
T Consensus       247 ----s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn  320 (603)
T KOG0318|consen  247 ----STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN  320 (603)
T ss_pred             ----CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence                67799999999999999999999887764443  444555664  6689999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-------------------------------E------------
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-------------------------------K------------  194 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~-------------------------------~------------  194 (579)
                      ..|+++..+|++++|++|+  |.|.-|+..++..-+                               .            
T Consensus       321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~  400 (603)
T KOG0318|consen  321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE  400 (603)
T ss_pred             cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence            9999999999999999999  999999986542110                               0            


Q ss_pred             ------------------------------eecCC--------CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          195 ------------------------------FSGHP--------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       195 ------------------------------~~~h~--------~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                                                    +..+.        ....+++++|++.+++.++ .|+.|++|.+...... 
T Consensus       401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~-  478 (603)
T KOG0318|consen  401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELK-  478 (603)
T ss_pred             eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCccc-
Confidence                                          00010        1235678899999999988 7999999999887643 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC-eeEEeeeccCCcccccccchhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                        .......+...++++.++     ||+.+|+++...+.+.+||..+.+.....-. +.-.+.+.. ++|+.+    .++
T Consensus       479 --ee~~~~~h~a~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~----~vA  546 (603)
T KOG0318|consen  479 --EEAKLLEHRAAITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNK----LVA  546 (603)
T ss_pred             --ceeeeecccCCceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCce----EEE
Confidence              112233455567788888     9999999999999999999998876322111 233344444 788877    899


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +|+.|..+..|+-       ............|...|..+.|-.+...  +|.+.|..+|+|++
T Consensus       547 TGSlDt~Viiysv-------~kP~~~i~iknAH~~gVn~v~wlde~tv--vSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  547 TGSLDTNVIIYSV-------KKPAKHIIIKNAHLGGVNSVAWLDESTV--VSSGQDANIKVWNV  601 (603)
T ss_pred             eccccceEEEEEc-------cChhhheEeccccccCceeEEEecCceE--EeccCcceeEEecc
Confidence            9999875544321       1111112233358888999999877665  56777999999987

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=5e-31  Score=247.31  Aligned_cols=284  Identities=11%  Similarity=0.127  Sum_probs=231.4

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +..|.++  .|.| .+.+|++|+.|+.|+||++.. +.++++|.+|..++..+.|+..                      
T Consensus       214 ~kgvsai--~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~----------------------  269 (503)
T KOG0282|consen  214 TKGVSAI--QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC----------------------  269 (503)
T ss_pred             ccccchh--hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc----------------------
Confidence            3456444  8999 888999999999999999987 8999999999999999988887                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                           +..+++++-|+.|++||+.+|+++.++..  ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-
T Consensus       270 -----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL  342 (503)
T KOG0282|consen  270 -----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL  342 (503)
T ss_pred             -----CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence                 88899999999999999999999888743  3568999999998 779999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      +.|..+.|-++|+.+++++  +++++|+.+.+..+.... .+.....++..+|++++++.-+ .|+.|.++.+...-...
T Consensus       343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccC
Confidence            9999999999999999998  899999999876654432 2334566889999999999887 79999999976543332


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      ....+.-..-...-.-+.|+     |||.+|++|+.||.+.+||.++.+.+.                            
T Consensus       422 kkK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~----------------------------  468 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS----------------------------  468 (503)
T ss_pred             HhhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh----------------------------
Confidence            22223222122222334565     999999999999999999987765543                            


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                 ++..|...++.+.|.|--.--+++|+.||.|++|+
T Consensus       469 ---------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 ---------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ---------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                                       23356677888888887765449999999999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-29  Score=238.96  Aligned_cols=434  Identities=15%  Similarity=0.197  Sum_probs=288.4

Q ss_pred             CcccceEEEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~-lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++|.++  +|||...| +|+.+ .-++.||+..+......+..-...+.+..|..+                        
T Consensus        27 ~~vssl--~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D------------------------   79 (487)
T KOG0310|consen   27 NSVSSL--CFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD------------------------   79 (487)
T ss_pred             CcceeE--ecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecC------------------------
Confidence            567444  99996653 44444 357999999887776655544444444444443                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         +.+++.|...|.|++||..+...+ +.+.+|+.+|....|+|+++. +++|++|+.+++||+.+......+.+|++.
T Consensus        80 ---G~LlaaGD~sG~V~vfD~k~r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   80 ---GRLLAAGDESGHVKVFDMKSRVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             ---CeEEEccCCcCcEEEeccccHHHH-HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence               899999999999999996664444 445789999999999996654 788889999999999888765579999999


Q ss_pred             eeEEEEccCCC-EEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          162 ISCMAVSSDGK-MLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      |.|.+|+|... ++++|+  |.|++||+++. ..+.++. |..+|..+.+-|.|..++++|  ...|++||+.++.+.  
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql--  230 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL--  230 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee--
Confidence            99999999655 677777  99999999986 6677775 999999999999999999886  468999999976543  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhc
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                        +.....+...++|+.+.     .++..|++++-||.+++||..+.+.+...                           
T Consensus       231 --l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~---------------------------  276 (487)
T KOG0310|consen  231 --LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSW---------------------------  276 (487)
T ss_pred             --hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEee---------------------------
Confidence              22333456667788887     78899999999999999996555443211                           


Q ss_pred             cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeeccCCccccccC
Q 008041          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLP  397 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~  397 (579)
                                                   .-.++|.+++.|||++.+ +.|-.++.+-+-...  ++.-   .......+
T Consensus       277 -----------------------------~~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~--~k~k---~s~~~~~r  321 (487)
T KOG0310|consen  277 -----------------------------KYPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRRE--VKKK---PSKEPKRR  321 (487)
T ss_pred             -----------------------------ecccceeeEEecCCCceE-EEecccceeeeehhh--cccC---CCcccccc
Confidence                                         113488999999999998 777778877555331  1110   00000000


Q ss_pred             CccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcccccccCCcCCCHHH-HHHhcCCCCCCCCCCCCchhh
Q 008041          398 LPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMED-RLRSLGILSNKDDLLSNSALE  476 (579)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~  476 (579)
                      ..+. .......++.                   ....+.+ +.-..+.+....+.-| .|...             ..+
T Consensus       322 ~~r~-~~~~v~~r~~-------------------~~~~~~d-div~n~~~r~~L~~~Dk~Lk~F-------------~~k  367 (487)
T KOG0310|consen  322 ADRS-DGFFVKVRGQ-------------------NYKGQKD-DIVVNEVKRLKLTYFDKRLKQF-------------KHK  367 (487)
T ss_pred             cccc-ccceEeeecc-------------------ccccccc-eeEeccccccCCchHHHHHhhh-------------hHH
Confidence            0000 0000000100                   0000000 0000000000111111 11111             111


Q ss_pred             hhhcccee----------ecccC-ChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCC
Q 008041          477 ATLFNGID----------FETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQ  545 (579)
Q Consensus       477 ~~l~~~l~----------l~~~~-~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~  545 (579)
                      .+|...+.          +++.+ -.-.+...+....-..+.+||.||.+ .-+.+.-...++.|+..+|-..+.-+-..
T Consensus       368 kALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~-~l~~~rf~~~L~~~~~~iLd~Y~~~i~~s  446 (487)
T KOG0310|consen  368 KALDHVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVK-NLTVVRFASILMEVVSVILDLYARDIEGS  446 (487)
T ss_pred             HHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHhhhccC
Confidence            11211110          01111 12366677777888888999999995 44777778899999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhh--hhhhhhhceeeeEe
Q 008041          546 ESLTPMLSSLYKVRKKKL--FASAFTCFILLYLF  577 (579)
Q Consensus       546 ~~l~~~l~~l~~~~~~r~--~~~~~~~~~~~~~~  577 (579)
                      |.+...+..|...+++-+  +..++...+-|.||
T Consensus       447 ~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL  480 (487)
T KOG0310|consen  447 PMLAKLIQALRGKVEQEVRVQKELLRLIGMLDML  480 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877  55555444444433

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-30  Score=235.37  Aligned_cols=238  Identities=20%  Similarity=0.333  Sum_probs=209.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +..|.++  +|+..|+++|+++.|-.+++||.++ .++.....+|...+.+..|-|.                       
T Consensus       150 t~sv~di--~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~-----------------------  204 (406)
T KOG0295|consen  150 TDSVFDI--SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL-----------------------  204 (406)
T ss_pred             ccceeEE--EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec-----------------------
Confidence            3457444  9999999999999998899999876 4555556666655555555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+|++++.|.+|+.|++.+|.++.++ .+|..-|.-+..+.||..+++|+.|.+|++|-+.++++...++.|+.+
T Consensus       205 ----gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  205 ----GDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP  279 (406)
T ss_pred             ----CCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence                788999999999999999999999777 789999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccC---------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          162 ISCMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       162 v~~l~~~p~---------------g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                      |.|++|-|.               +.++.+++  ++|++||+.++.++.++.+|.+.|..++|+|.|+||++++ +|+++
T Consensus       280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktl  358 (406)
T KOG0295|consen  280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTL  358 (406)
T ss_pred             eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcE
Confidence            999999873               24777887  8999999999999999999999999999999999999998 79999


Q ss_pred             EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      ++||+...+     |+.++..+..++.+..|.     .+..++++|+.|.++++|..
T Consensus       359 rvwdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  359 RVWDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence            999999987     667778888889999997     66679999999999999964

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.7e-29  Score=236.03  Aligned_cols=247  Identities=13%  Similarity=0.277  Sum_probs=212.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|+++  +|+.+|.+||+|+.||.++||+. +|.+..++..|.+++..+-|+..                         
T Consensus       236 kdVT~L--~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~-------------------------  287 (524)
T KOG0273|consen  236 KDVTSL--DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK-------------------------  287 (524)
T ss_pred             CCcceE--EecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC-------------------------
Confidence            457444  99999999999999999999996 57777777666665554444433                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        +++|++++.||++.+||..+++....+ .-|..+-.++.|-.+ ..|++++.|+.|+++-+....++.+|.+|.+.|.
T Consensus       288 --G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~  363 (524)
T KOG0273|consen  288 --GTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN  363 (524)
T ss_pred             --CCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence              899999999999999999999988666 568888788888654 4689999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---------CEEEEEecCCCeEEEEEcCCC
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~---------~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ++.|+|.|.+|++++  ++++||+.........+.+|...|..+.|+|+|         ..+++++ .|++|++||+..+
T Consensus       364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~g  442 (524)
T KOG0273|consen  364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESG  442 (524)
T ss_pred             EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCC
Confidence            999999999999999  999999999888999999999999999999974         3577777 6999999999998


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      .     ++..+..+...+..+.|+     |+|+++++|+.||.|++|+.++++.++.....
T Consensus       443 v-----~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  443 V-----PIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             c-----eeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence            7     446675666667778887     99999999999999999999999988766544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=224.41  Aligned_cols=279  Identities=14%  Similarity=0.137  Sum_probs=233.9

Q ss_pred             CCCcccceEEEEcc---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            2 GSSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         2 ~~~~V~~l~~~fsp---dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      ++.||  +.++|||   +|-+|++++.||.-.+-+-++|.-+-+|.+|.+.+.+.....+                    
T Consensus        13 htrpv--vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n--------------------   70 (334)
T KOG0278|consen   13 HTRPV--VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN--------------------   70 (334)
T ss_pred             CCcce--eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch--------------------
Confidence            46788  6679986   8889999999999999999999999999999988876666554                    


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeec
Q 008041           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA  157 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~  157 (579)
                             ....++++.|-+-++||.-+|..+..+  .|.--|.+++|+.|.++|++|+.+..+++||++..+ +...+.+
T Consensus        71 -------a~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   71 -------ATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             -------hhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence                   445688889999999999999988666  477789999999999999999999999999997654 5567899


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |.+.|..+.|....+.++++.  ++|++||.++++.+.++. ...+|+++.++++|+++.++  ..+.|..||..+-...
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL  218 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce
Confidence            999999999999888888866  999999999999999887 67889999999999987665  4688999999886643


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                           .....+. .+......     |+...+++|++|+.++.||..+++.+..+                         
T Consensus       219 -----Ks~k~P~-nV~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~~-------------------------  262 (334)
T KOG0278|consen  219 -----KSYKMPC-NVESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------------------------  262 (334)
T ss_pred             -----eeccCcc-cccccccc-----CCCceEEecCcceEEEEEeccCCceeeec-------------------------
Confidence                 2222222 23334444     89999999999999999999998765321                         


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                   .++|.++|.|+.|||||..- +|||+|+++++|...
T Consensus       263 -----------------------------nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  263 -----------------------------NKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT  297 (334)
T ss_pred             -----------------------------ccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence                                         13788999999999999999 999999999999763

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.9e-30  Score=238.25  Aligned_cols=239  Identities=15%  Similarity=0.179  Sum_probs=199.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++||.+  .||++|.++++|+.+|.|++|+..-. .+..++.|. ..+.+++|++.                      
T Consensus       137 HDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpn----------------------  191 (464)
T KOG0284|consen  137 HDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPN----------------------  191 (464)
T ss_pred             hcccceeE--EEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCC----------------------
Confidence            57899666  99999999999999999999997533 333344332 45555555544                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           ...+++++.||.|+|||....+....+ .+|.-.|.++.|+|....++++|.|..|++||.++|+++.++.+|+.
T Consensus       192 -----DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn  265 (464)
T KOG0284|consen  192 -----DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN  265 (464)
T ss_pred             -----CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence                 566999999999999999987765444 79999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|..+.|+|++++|++++  ..+++||+++.+.+.++.+|...|+++.|+|-..-|++.+..||.|..|.+...+..   
T Consensus       266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---  342 (464)
T KOG0284|consen  266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---  342 (464)
T ss_pred             eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---
Confidence            999999999999999999  799999999999999999999999999999977655555558999999999854432   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      .... ..+...+..+.+.     |-|..|++|+.|.++++|.
T Consensus       343 ~~i~-~AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  343 GEIP-PAHDGEIWSLAYH-----PLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cCCC-cccccceeeeecc-----ccceeEeecCCCcceeeec
Confidence            1112 2444555566666     9999999999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.5e-29  Score=251.03  Aligned_cols=258  Identities=16%  Similarity=0.202  Sum_probs=223.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++.|+.+  +|+|...++.++--.|.|++||.+=+.++..|..|.+++..+.|++.                        
T Consensus         9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------   62 (1202)
T KOG0292|consen    9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------   62 (1202)
T ss_pred             cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence            4567677  99999999999999999999999999999999999999999999987                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         ..++++|+.|..|++|+..+.+++.++ .||-+-|..+.|++.-.+++|+|.|.+|+||+..+++++..+++|...|
T Consensus        63 ---qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV  138 (1202)
T KOG0292|consen   63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV  138 (1202)
T ss_pred             ---CCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence               788999999999999999999999877 5899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCe-----------------------------eeEEeecCCCCEEEEEEecCC
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------------------------KMQKFSGHPGAVRFMTFSDNG  211 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~s~~~  211 (579)
                      .|..|+|....+++++  .+|+|||+..-+                             ....+.||...|+.++|+|.-
T Consensus       139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            9999999999999999  899999984210                             123457999999999999999


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..+++|+ +|+.|++|.+...+.-   .+-+...+-..++++.|.     |....|++.++|+.|+|||+...+.+..++
T Consensus       219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence            9999987 7999999998876532   222333444555666676     888999999999999999999888777765


Q ss_pred             CeeEEeee
Q 008041          292 ATKILSSS  299 (579)
Q Consensus       292 ~~~~~~~~  299 (579)
                      ....+...
T Consensus       290 rendRFW~  297 (1202)
T KOG0292|consen  290 RENDRFWI  297 (1202)
T ss_pred             ccCCeEEE
Confidence            54444443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.6e-27  Score=211.83  Aligned_cols=250  Identities=16%  Similarity=0.191  Sum_probs=199.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.|  .++.|+++|.+|++++.|.+++|||..+|+++.++..+...+....|..+                        
T Consensus        14 ~~~i--~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------   67 (311)
T KOG1446|consen   14 NGKI--NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------   67 (311)
T ss_pred             CCce--eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC------------------------
Confidence            3567  45599999999999999999999999999999988766655555555443                        


Q ss_pred             ccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           83 KLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         ...++.++.  |.+|+..++.+++.+ +++.||...|++++.+|-+..|++++.|++|++||++..++...+.....
T Consensus        68 ---~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~  143 (311)
T KOG1446|consen   68 ---SNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR  143 (311)
T ss_pred             ---CceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence               344555555  677999999999998 55689999999999999999999999999999999998887777664444


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +  .++|+|+|-++|++.  +.|++||++.-  .+..+|.   +.....+.+.|+|||++++.+. ..+.+++.|.-.+.
T Consensus       144 p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~  220 (311)
T KOG1446|consen  144 P--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT  220 (311)
T ss_pred             c--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc
Confidence            4  489999999999998  48999999964  3444443   3356789999999999999887 68999999998887


Q ss_pred             cccceeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          234 KQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      ..   ..+.... .....-..+|.     ||++++++|+.||+|++|+++++..+....+.
T Consensus       221 ~~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  221 VK---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             Ee---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            44   2222222 22222455666     99999999999999999999999988766654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-28  Score=247.57  Aligned_cols=259  Identities=15%  Similarity=0.186  Sum_probs=190.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------ec--------cC
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---------------------------FA--------DI   46 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~---------------------------~~--------~~   46 (579)
                      +.++|  +++.||+||+|||+||.||.|+||.+........                           ..        +.
T Consensus       266 h~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  266 HKGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cCCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            46789  9999999999999999999999999876211000                           00        00


Q ss_pred             c-----cccccccccccc---cccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC
Q 008041           47 A-----STETTSLYGNRL---EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG  118 (579)
Q Consensus        47 ~-----~~~~~~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~  118 (579)
                      .     .+.....|++..   ..||. .++-.+.|..          +++|++++.|.+|++|++...+++..+  .|.+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hnd  410 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHND  410 (712)
T ss_pred             CCccccCCCccccccccchhhhhccc-hhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCC
Confidence            0     000111122111   12443 3555677765          789999999999999999999999777  5999


Q ss_pred             CEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008041          119 GVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       119 ~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~  195 (579)
                      -|+|++|+| |.+||++|+.||.|++|++...+.+.-.. -..-|++++|.|||+..++|+  |.+++|+....+....+
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            999999999 88899999999999999997666554443 457899999999999999999  99999999887766544


Q ss_pred             ec--C------CCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcE
Q 008041          196 SG--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY  266 (579)
Q Consensus       196 ~~--h------~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      .-  |      ...|+.+.|.|... .+++++ .|..|+|||.+.....   +.+.-.+.......+.|+     .||++
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~  560 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKH  560 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCE
Confidence            21  1      12799999987544 344444 6999999999776543   223323333333445565     89999


Q ss_pred             EEEEEcCCeEEEEEcCCce
Q 008041          267 VLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       267 l~~~~~dg~i~iwd~~~~~  285 (579)
                      |+++++|..|++|+.+...
T Consensus       561 IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  561 IVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             EEEeecCceEEEEeCCCCc
Confidence            9999999999999975543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.9e-28  Score=239.66  Aligned_cols=270  Identities=17%  Similarity=0.259  Sum_probs=222.8

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        13 fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      +.|+.++||.+++.+.+|+|+..+..+. .+.+|...+.++.                 .|..          +.+|++|
T Consensus       332 lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~-----------------~~~~----------g~llat~  383 (775)
T KOG0319|consen  332 LGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD-----------------VWSS----------GDLLATG  383 (775)
T ss_pred             cCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee-----------------eccc----------CcEEEEe
Confidence            4567799999999999999999888876 5666665544332                 2222          6789999


Q ss_pred             ECCCeEEEEEccCCeEE---EEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-----e----eeEeecCC
Q 008041           93 TGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-----L----LGKFRAST  159 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~---~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~-----~----~~~~~~~~  159 (579)
                      +.|.++++|.+..+...   .....+|+..|.+++++..+ .+|+++|.|+++++|++...+     .    ..+...|.
T Consensus       384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd  463 (775)
T KOG0319|consen  384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD  463 (775)
T ss_pred             cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence            99999999988544331   12236899999999998755 458999999999999987521     1    11345799


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ..|+|++++|+.+++++|+  .+.++|+++..+...++.||...|.++.|+|..+.+++++ .|++|+||.+.+..    
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fS----  538 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFS----  538 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccce----
Confidence            9999999999999999999  8999999999999999999999999999999999999987 79999999999865    


Q ss_pred             eeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          238 SCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                       |+.++. |...+..+.+.      .+|..|++++.||-|++|++++.+.+.+                           
T Consensus       539 -ClkT~eGH~~aVlra~F~------~~~~qliS~~adGliKlWnikt~eC~~t---------------------------  584 (775)
T KOG0319|consen  539 -CLKTFEGHTSAVLRASFI------RNGKQLISAGADGLIKLWNIKTNECEMT---------------------------  584 (775)
T ss_pred             -eeeeecCccceeEeeeee------eCCcEEEeccCCCcEEEEeccchhhhhh---------------------------
Confidence             677887 55666666666      5899999999999999999887765432                           


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                  +..|.+.|+.++.+|++.++ +||+.|+.+-+|.
T Consensus       585 ----------------------------lD~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  585 ----------------------------LDAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK  617 (775)
T ss_pred             ----------------------------hhhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence                                        33788899999999999998 9999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=6.3e-30  Score=229.97  Aligned_cols=238  Identities=14%  Similarity=0.251  Sum_probs=196.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++.|  +|+.|  |.+.+++|+.|.+|+|||+++|+++.++-+|...+.-+.|+                         
T Consensus       236 HtGSV--LCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-------------------------  286 (499)
T KOG0281|consen  236 HTGSV--LCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-------------------------  286 (499)
T ss_pred             CCCcE--Eeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-------------------------
Confidence            46778  87777  56799999999999999999999999888777766655554                         


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                          ++++++++.|..|.+||+.....  ..+.+.||...|+.+.|  +.+++++++.|.+|++|++.+++.++++.+|.
T Consensus       287 ----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHk  360 (499)
T KOG0281|consen  287 ----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK  360 (499)
T ss_pred             ----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhccc
Confidence                66799999999999999986543  33456799999999999  56799999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-  236 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~-  236 (579)
                      .+|.|+.+.  |+++++|+  ++|++||+..|++++.++||+.-|.++.|.  .+.+++|+ .||+|++||+..+.... 
T Consensus       361 RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  361 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCcc
Confidence            999998875  88999998  899999999999999999999999999995  56789988 79999999998875431 


Q ss_pred             ---ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                         ..|+..+..+..-+--+.|       |...+++++.|.+|.|||..++-.
T Consensus       436 ~~~~~Cl~~lv~hsgRVFrLQF-------D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  436 PASTLCLRTLVEHSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cccchHHHhhhhccceeEEEee-------cceEEEeccCCCeEEEEEcCCCCc
Confidence               1233333333322223444       557899999999999999877643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=4.4e-28  Score=210.99  Aligned_cols=276  Identities=13%  Similarity=0.119  Sum_probs=215.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +.+|++++.|....+|-...|+.+.++ .+|++.|+|+....+.+++++|+.|.++++||+.+|+++.+++ ...+|..+
T Consensus        22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~   99 (327)
T KOG0643|consen   22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV   99 (327)
T ss_pred             CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence            999999999999999999999998777 7999999999999999999999999999999999999999988 45689999


Q ss_pred             EEccCCCEEEEEC-------CeEEEEECC-------CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       166 ~~~p~g~~l~~~~-------~~i~vwd~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .|+++|++++...       +.|.++|++       +.+++..+..+.+.++.+.|.|-+++|+++. .||.|.+||.++
T Consensus       100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~  178 (327)
T KOG0643|consen  100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART  178 (327)
T ss_pred             eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence            9999999988765       589999998       4456888888999999999999999999986 899999999999


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccc
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      ++..    +.....+...+..+.++     +|..++++++.|.+.++||..+.+.+++.....+..+. . ++|....  
T Consensus       179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a-a-isP~~d~--  245 (327)
T KOG0643|consen  179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA-A-ISPLLDH--  245 (327)
T ss_pred             Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeecccccce-e-cccccce--
Confidence            8643    23333444466666776     99999999999999999999999888776544333222 2 2333321  


Q ss_pred             hhhhhccccce-ecCCceEEE--E--EeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          312 AAIFAAKLQDI-VKPASVHTF--V--AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       312 ~~i~~~~~~~~-~~~~~~~~~--~--~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                       .|+.|..+-. +..-....-  .  .+.......+..+++|.+++.+++|+|||+.- +||++|+.+|+--.
T Consensus       246 -VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  246 -VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHF  316 (327)
T ss_pred             -EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEe
Confidence             4444443321 000000000  0  00011124456788999999999999999999 99999999998765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.4e-28  Score=245.33  Aligned_cols=237  Identities=24%  Similarity=0.389  Sum_probs=202.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..|+++  +|+|||+++++|+.|++|+|||+ ..+..+.++.+|...+.++.|++.                        
T Consensus       204 ~~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------------------------  257 (456)
T KOG0266|consen  204 RGVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------------------------  257 (456)
T ss_pred             cceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------------------------
Confidence            456445  99999999999999999999999 666899999999888888888776                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~  160 (579)
                         ++++++|+.|++|++||+.+++++..+ .+|.++|++++|+++++++++++.|+.|++||+.++.  +...+..+..
T Consensus       258 ---g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  333 (456)
T KOG0266|consen  258 ---GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN  333 (456)
T ss_pred             ---CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence               788999999999999999999998666 7899999999999999999999999999999999998  5677776665


Q ss_pred             C--eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE---EEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          161 G--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR---FMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~--v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~---~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .  ++++.|+|++++++++.  +.+++||+..++.+..+.+|...+.   +..+++.++++++++ .|+.|.+|++.+..
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGG  412 (456)
T ss_pred             CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccc
Confidence            5  99999999999999998  6999999999999999999987543   334567899999987 89999999999865


Q ss_pred             cccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEc
Q 008041          234 KQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYG  281 (579)
Q Consensus       234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~  281 (579)
                      ..     ..+..+ ...+....++     |...++++++  .|+.+++|..
T Consensus       413 ~~-----~~l~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  413 IL-----QRLEGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             hh-----hhhcCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecC
Confidence            33     233333 4444555555     8889999998  6899999964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-28  Score=208.44  Aligned_cols=245  Identities=17%  Similarity=0.195  Sum_probs=201.3

Q ss_pred             EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008041          111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (579)
Q Consensus       111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~  188 (579)
                      .++..|.++|.++.|+-+|+|.++|+.|.+|++|+...|.+++++.+|...|..++.+.|+..+++++  ..+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            34477999999999999999999999999999999999999999999999999999999999999988  6999999999


Q ss_pred             CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                      |+.++.|.+|.+.|+.++|+.+...+++++ -|..+++||.++....   ++..+......+..+..       .+..|+
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-fD~s~r~wDCRS~s~e---PiQildea~D~V~Si~v-------~~heIv  159 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-FDSSVRLWDCRSRSFE---PIQILDEAKDGVSSIDV-------AEHEIV  159 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEecc-ccceeEEEEcccCCCC---ccchhhhhcCceeEEEe-------cccEEE
Confidence            999999999999999999999998888887 6999999999988644   45555544444444444       468899


Q ss_pred             EEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC
Q 008041          269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN  348 (579)
Q Consensus       269 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h  348 (579)
                      +|+.||+++.||++.|+.....-+..+...+   |+++++    ..++++.++++++.|        ......++.+++|
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs---~s~d~n----c~La~~l~stlrLlD--------k~tGklL~sYkGh  224 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVS---FSKDGN----CSLASSLDSTLRLLD--------KETGKLLKSYKGH  224 (307)
T ss_pred             eeccCCcEEEEEeecceeehhhcCCcceeEE---ecCCCC----EEEEeeccceeeecc--------cchhHHHHHhccc
Confidence            9999999999999999876544333333222   677877    778888877766644        3344555567788


Q ss_pred             CCC--cEEEeecCCcceeeccccceecccceeeeec
Q 008041          349 SGE--DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       349 ~~~--v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                      .+.  ...++++..-.++ ++||+|+.+++|++.+.
T Consensus       225 kn~eykldc~l~qsdthV-~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  225 KNMEYKLDCCLNQSDTHV-FSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             ccceeeeeeeecccceeE-EeccCCceEEEEEeccc
Confidence            765  4556677777888 99999999999999654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=3e-28  Score=220.15  Aligned_cols=225  Identities=18%  Similarity=0.254  Sum_probs=196.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +..+++|+.|++|+|||+.+|++...+ .||-..|..+++++...|+++++.|+.|++||++..+.++.+.+|-..|.|+
T Consensus       163 n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L  241 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL  241 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence            788999999999999999999998666 7899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      +.+|.-..|++|+  .++++||+++...+..+.||..+|.++.+.|....+++++ .|++|++||++.++.     ..++
T Consensus       242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt-----~~tl  315 (460)
T KOG0285|consen  242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKT-----MITL  315 (460)
T ss_pred             eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCce-----eEee
Confidence            9999999999999  7999999999999999999999999999999888899987 799999999999873     3567


Q ss_pred             ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccccee
Q 008041          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  323 (579)
                      .++...+.+++..     |....+++++.| .|+-|++..+..+.+                                  
T Consensus       316 t~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~n----------------------------------  355 (460)
T KOG0285|consen  316 THHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQN----------------------------------  355 (460)
T ss_pred             ecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhhc----------------------------------
Confidence            7888888888887     888888888876 578888766654432                                  


Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                           +.+|..-+.+++...||.+  ++|++.+++.+|+-.
T Consensus       356 ---------------------lsgh~~iintl~~nsD~v~--~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  356 ---------------------LSGHNAIINTLSVNSDGVL--VSGGDNGSIMFWDWK  389 (460)
T ss_pred             ---------------------cccccceeeeeeeccCceE--EEcCCceEEEEEecC
Confidence                                 2355656677777777765  478888888888874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=9.3e-28  Score=217.85  Aligned_cols=272  Identities=14%  Similarity=0.198  Sum_probs=214.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .++.||.||.|||||+.+|.|+||+..+|.....+..                     .+..+.|....|.    
T Consensus       107 DSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---------------------e~~dieWl~WHp~----  159 (399)
T KOG0296|consen  107 DSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---------------------EVEDIEWLKWHPR----  159 (399)
T ss_pred             Cce--EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---------------------ccCceEEEEeccc----
Confidence            456  7779999999999999999999999999998877631                     2223444444433    


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-Ce
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GI  162 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v  162 (579)
                        ...++.|+.||.+.+|.+..+... +++.||+.++++-.|.|+|+.++++..||+|++||+.+++++.++....+ ..
T Consensus       160 --a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~  236 (399)
T KOG0296|consen  160 --AHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL  236 (399)
T ss_pred             --ccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence              788999999999999999987444 55589999999999999999999999999999999999999988875433 67


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEecCC---CEEEEEecCCCeEEEEEc
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRT  229 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~  229 (579)
                      .++.++..+..++.|.  +.+++-+..+|+.+....        .+...+.++.+.|..   +..++++ -||+|.|||+
T Consensus       237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~  315 (399)
T KOG0296|consen  237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDL  315 (399)
T ss_pred             CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEec
Confidence            8899999999988888  788888888888776655        455556666665543   4455554 7999999999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccc
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (579)
                      ...+.+     ....|...++.+.+.      + ..+|++++.+|.|+.||.++|+.+....++...+-... .+++.+ 
T Consensus       316 a~~~~R-----~~c~he~~V~~l~w~------~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~-  381 (399)
T KOG0296|consen  316 AASTLR-----HICEHEDGVTKLKWL------N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKR-  381 (399)
T ss_pred             ccchhh-----eeccCCCceEEEEEc------C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCc-
Confidence            987755     345566666666654      4 68999999999999999999999988887776665544 455555 


Q ss_pred             cchhhhhcccccee
Q 008041          310 ATAAIFAAKLQDIV  323 (579)
Q Consensus       310 ~~~~i~~~~~~~~~  323 (579)
                         .+++++.|+..
T Consensus       382 ---~vvT~s~D~~a  392 (399)
T KOG0296|consen  382 ---LVVTVSDDNTA  392 (399)
T ss_pred             ---EEEEecCCCeE
Confidence               78888876543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.3e-28  Score=218.45  Aligned_cols=303  Identities=17%  Similarity=0.170  Sum_probs=212.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+|+|+-  +|||||.++|+|+.|..|+|.|+...--.....                                     
T Consensus       111 HK~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks~~~-------------------------------------  151 (430)
T KOG0640|consen  111 HKSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKSKPK-------------------------------------  151 (430)
T ss_pred             cccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhcchh-------------------------------------
Confidence            35677666  999999999999999999999986321100000                                     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--C
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--S  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~  158 (579)
                            -+..+.         .+.+ -++ +.+..|.++|+++.|+|....|++++.|++|++||+..-...+.|+.  .
T Consensus       152 ------em~~~~---------~qa~hPvI-RTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd  215 (430)
T KOG0640|consen  152 ------EMISGD---------TQARHPVI-RTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD  215 (430)
T ss_pred             ------hhccCC---------cccCCceE-eehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence                  000000         0111 223 34457999999999999999999999999999999875443333332  3


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ..+|.++.|+|.|.++++|.  ..+++||+.+.++...-   .+|.+.|+++.+++.++..++++ .||.|++||--+++
T Consensus       216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~r  294 (430)
T KOG0640|consen  216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNR  294 (430)
T ss_pred             cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHH
Confidence            45899999999999999998  79999999998886543   47899999999999999888887 89999999977766


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe----eEEeeeccCCcccccc
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT----KILSSSEDVNSKSQKS  309 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  309 (579)
                      ..   ..+.-.|....+....|.     .+|+++++.+.|..+++|.+.+++.+....+.    +.......+|..... 
T Consensus       295 Cv---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-  365 (430)
T KOG0640|consen  295 CV---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED-  365 (430)
T ss_pred             HH---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc-
Confidence            33   123334777778888887     89999999999999999999999887654432    111111111111111 


Q ss_pred             cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       310 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                         +++.-...      .+.+..++.........--.+|.+.+..+.-||.+.-+ ++||.|...|+|.-
T Consensus       366 ---yVl~pDEa------s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr  425 (430)
T KOG0640|consen  366 ---YVLFPDEA------SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR  425 (430)
T ss_pred             ---eEEccccc------cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence               21111110      11222222221112222335799999999999999999 99999999999965

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=5.1e-26  Score=226.74  Aligned_cols=311  Identities=14%  Similarity=0.183  Sum_probs=245.1

Q ss_pred             EccCC--CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           13 FSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        13 fspdg--~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++|+.  +.++.|+.+|.+.+|++++++.+.+|+++...++++.-+|.                           -..++
T Consensus       166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVVa  218 (910)
T KOG1539|consen  166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVVA  218 (910)
T ss_pred             ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEEE
Confidence            67765  56788999999999999999999999987777766655554                           56799


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee------------
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR------------  156 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~------------  156 (579)
                      +|..+|+|.++|++.++.+..+.  | .++|++++|..||+. +++|+..|.+.+||++..+.+...+            
T Consensus       219 iG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f  296 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF  296 (910)
T ss_pred             EeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence            99999999999999999998884  4 489999999999987 5666677999999997543221111            


Q ss_pred             --------------------------------------------------------------------------------
Q 008041          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------cCC------CCeeEEEE
Q 008041          157 ---------------------------------------------------------------AST------KGISCMAV  167 (579)
Q Consensus       157 ---------------------------------------------------------------~~~------~~v~~l~~  167 (579)
                                                                                     .+.      ..+++++.
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v  456 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV  456 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence                                                                           111      35778888


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      ++.|++.+.|.  |.|-+|++++|-....|   +.|..+|+.++...-++.+++++ .+|.++.||.......   ....
T Consensus       457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l~  532 (910)
T KOG1539|consen  457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSLR  532 (910)
T ss_pred             eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eeec
Confidence            99999988887  99999999999888888   58999999999999899999998 6999999999887533   1122


Q ss_pred             eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccce
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      +.+.  . .+....     .....++.+..|=.|.++|..+.+..+.+.++...+.... ||++++    .+++++.|+.
T Consensus       533 l~~~--~-~~iv~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~t  599 (910)
T KOG1539|consen  533 LGSS--I-TGIVYH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDST  599 (910)
T ss_pred             cCCC--c-ceeeee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCCc
Confidence            2222  2 222222     4557788888999999999999999999988888877776 899999    8999999998


Q ss_pred             ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce-ecccceee
Q 008041          323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRYV  379 (579)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d-~~~~~w~~  379 (579)
                      ++.||        .....+...+ .-..++.++.|||+|.+| ++...| .-+++|.-
T Consensus       600 Ir~wD--------lpt~~lID~~-~vd~~~~sls~SPngD~L-AT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  600 IRTWD--------LPTGTLIDGL-LVDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEEEe--------ccCcceeeeE-ecCCcceeeEECCCCCEE-EEEEecCceEEEEEc
Confidence            88866        2222222222 344589999999999999 888777 66899953

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.5e-27  Score=224.98  Aligned_cols=237  Identities=14%  Similarity=0.166  Sum_probs=197.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..-|||+-  .|=+--+++++|+.|..|+||+..+++.+..|..|...+.++..+|.                       
T Consensus        54 ~~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt-----------------------  108 (794)
T KOG0276|consen   54 SEVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT-----------------------  108 (794)
T ss_pred             cccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC-----------------------
Confidence            34678665  88888899999999999999999999999999999887777766665                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          ..++++++.|-.|++||...+=...+.+.||+--|.+++|+| |.+.|++++.|++|++|.+.+..+..++++|..
T Consensus       109 ----~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek  184 (794)
T KOG0276|consen  109 ----LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK  184 (794)
T ss_pred             ----CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence                567899999999999999987655566789999999999999 567799999999999999999999999999999


Q ss_pred             CeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          161 GISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       161 ~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      +|+|+++-|.|  .++++|+  .+|+|||.++..|+.++.||...|+.+.|+|.=..+++|+ +||++++|+..+-+.. 
T Consensus       185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE-  262 (794)
T KOG0276|consen  185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE-  262 (794)
T ss_pred             CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh-
Confidence            99999999855  6899988  7999999999999999999999999999999999999987 8999999998876543 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  278 (579)
                          .++...-..+-++...     +.+..++.|...|.|.+
T Consensus       263 ----~tLn~gleRvW~I~~~-----k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  263 ----KTLNYGLERVWCIAAH-----KGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ----hhhhcCCceEEEEeec-----CCCCeEEEeccCCcEEE
Confidence                1222222223333333     45566666666665543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.2e-27  Score=202.83  Aligned_cols=248  Identities=15%  Similarity=0.257  Sum_probs=202.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|.++  +|+.+|..||+|+.|++++||++...+......               .+||. ..+..++|.+..    
T Consensus        19 ~~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---------------~~gh~-~svdql~w~~~~----   76 (313)
T KOG1407|consen   19 HVQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---------------YRGHT-DSVDQLCWDPKH----   76 (313)
T ss_pred             hhhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhc---------------ccCCC-cchhhheeCCCC----
Confidence            34677555  999999999999999999999998775543332               12332 233345666655    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++++.|.+|++||++.++++.++.  ..+.=.-+.|+|+|.+++.++.|..|...|.++.+.....+ ....
T Consensus        77 ----~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e  149 (313)
T KOG1407|consen   77 ----PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFE  149 (313)
T ss_pred             ----CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccce
Confidence                6789999999999999999999987763  33444567899999999999999999999999888776655 3446


Q ss_pred             eeEEEEccCCCEEEE-EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLAT-AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~-~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      +..++|+-++.+++. .+ |.|.|.....-+++.+++.|.....||.|+|+|+||++|+ .|-.+.+||++..-     |
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi-----C  223 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI-----C  223 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh-----h
Confidence            778888877666554 44 9999999999999999999999999999999999999998 69999999998754     5


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                      ...+...+..++.+.|+     .||++||++++|..|-|=+.++|..+..
T Consensus       224 ~R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  224 ERCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             heeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEEE
Confidence            56777788889999998     9999999999999999988888876643

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4.1e-26  Score=232.08  Aligned_cols=255  Identities=15%  Similarity=0.156  Sum_probs=195.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .+++|+..+++++.+.....|+...+..+..+.......    -.+++..+| ...+.++.|.|.+        +.+|++
T Consensus        27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~----~~~~~l~GH-~~~V~~v~fsP~d--------~~~LaS   93 (493)
T PTZ00421         27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA----SNPPILLGQ-EGPIIDVAFNPFD--------PQKLFT   93 (493)
T ss_pred             cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC----CCCceEeCC-CCCEEEEEEcCCC--------CCEEEE
Confidence            677887778888888888899987665443322111100    011223355 3467888898754        668999


Q ss_pred             EECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           92 GTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      |+.||.|++||+.++.       .+. .+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+.+|...|.
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~-~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIV-HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceE-EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence            9999999999998653       232 347899999999999975 6899999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccc
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~---~d~~i~vwd~~~~~~~~~  237 (579)
                      +++|+|+|++|++++  +.|++||+++++.+.++.+|.+. +..+.|.+++..+++++.   .|+.|++||++...... 
T Consensus       173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-  251 (493)
T PTZ00421        173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-  251 (493)
T ss_pred             EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-
Confidence            999999999999998  89999999999999999999865 456788998888887652   47899999998764320 


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeec
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR  288 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~  288 (579)
                       ..... +....+....|+     +++.+|++++ .||.|++||+.+++.+.
T Consensus       252 -~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        252 -STVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             -eEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence             11111 223334455666     8999998887 49999999998877554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.2e-28  Score=240.29  Aligned_cols=236  Identities=14%  Similarity=0.164  Sum_probs=201.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ...|+++-.+|.|.+||.+.+.++.++ .+|.++|.+++|+|++..|+||+.|-.|++|+..+.+++.++.+|-+.|..+
T Consensus        21 rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~   99 (1202)
T KOG0292|consen   21 RPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV   99 (1202)
T ss_pred             CCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence            667999999999999999999999777 6799999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc------
Q 008041          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------  237 (579)
Q Consensus       166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~------  237 (579)
                      .|++.-.++++++  .+|+||+..+++++..+.||...|.|..|+|....+++++ -|.+|+|||+..-++...      
T Consensus       100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e  178 (1202)
T KOG0292|consen  100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS-LDQTVRVWDISGLRKKNKAPGSLE  178 (1202)
T ss_pred             eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec-ccceEEEEeecchhccCCCCCCch
Confidence            9999999999999  8999999999999999999999999999999988999987 699999999865432210      


Q ss_pred             ------------------eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041          238 ------------------SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       238 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                                        ..-+.++.+..-+..++|.     |.-..|++|+.|..|++|.....+.             
T Consensus       179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmnetKa-------------  240 (1202)
T KOG0292|consen  179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMNETKA-------------  240 (1202)
T ss_pred             hhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEeccccc-------------
Confidence                              1112344555556666665     7778888888888899886432111             


Q ss_pred             ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                     |.         ..++.+|.+.|.++-|.|...++ +|.|+|+++++|++
T Consensus       241 -------------------------------WE---------vDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm  279 (1202)
T KOG0292|consen  241 -------------------------------WE---------VDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDM  279 (1202)
T ss_pred             -------------------------------ee---------ehhhhcccCCcceEEecCcccee-EecCCCccEEEEec
Confidence                                           00         12566899999999999999999 99999999999999


Q ss_pred             eec
Q 008041          380 QNR  382 (579)
Q Consensus       380 ~~~  382 (579)
                      ..+
T Consensus       280 ~kR  282 (1202)
T KOG0292|consen  280 TKR  282 (1202)
T ss_pred             ccc
Confidence            754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=4.9e-26  Score=220.28  Aligned_cols=233  Identities=21%  Similarity=0.299  Sum_probs=196.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+.|+|+++++++++.||.|++||..+++....+..+...                  +.++.|.+.         +.+
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~---------~~~  107 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------------------VSSVAFSPD---------GRI  107 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc------------------EEEEEEcCC---------CCE
Confidence            36699999999999999999999999988777777654433                  345555442         466


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++++.+|.|.+||+.+++....+ ..|...|.++.|+|++.++++++.|+.|++||+.+++.+..+..|...+.++.|+
T Consensus       108 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  186 (289)
T cd00200         108 LSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS  186 (289)
T ss_pred             EEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence            777777999999999988877666 4788999999999998888888889999999999999999999898899999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+++.+++++  +.|++||+++++.+..+..|...+.++.|+|++.++++++ .|+.|++|++...+..     ..+..+
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~  260 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGH  260 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEcccc
Confidence            9998888877  8999999999999988888999999999999987777765 6999999999876533     333344


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      ...+..+.|+     |++.+|++++.||.+++|+
T Consensus       261 ~~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         261 TNSVTSLAWS-----PDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence            5566777777     8999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=4.9e-28  Score=227.29  Aligned_cols=241  Identities=21%  Similarity=0.270  Sum_probs=194.0

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd  145 (579)
                      .++++.|+|..        +.++++++.|+.|+||++.. +.++.+ +.+|..+|.+++|+++|..|++++.|+.+++||
T Consensus       216 gvsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  216 GVSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRT-FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             ccchhhhccce--------eeEEEecCCCceEEEEEEecCcceehh-hhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            45566666644        77899999999999999988 666644 479999999999999999999999999999999


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041          146 PLTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                      +++|+++..|.. ...++|+.|+|++ +.+++|+  +.|+.||+++++.+.++..|-+.|..+.|-++|+++++++ +|+
T Consensus       287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk  364 (503)
T KOG0282|consen  287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK  364 (503)
T ss_pred             cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc
Confidence            999999999874 4578999999999 7777777  8999999999999999999999999999999999999987 799


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      +++||+.+..-...    +..........++...     |++.++++-+.|+.|.+|.....-.+.              
T Consensus       365 s~riWe~~~~v~ik----~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~n--------------  421 (503)
T KOG0282|consen  365 SVRIWENRIPVPIK----NIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLN--------------  421 (503)
T ss_pred             cEEEEEcCCCccch----hhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccC--------------
Confidence            99999998875431    1112222223344444     999999999999999999743221110              


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC--CCcEEEeecCCcceeeccccceecccceeee
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS--GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                          .+                                  +.+.+|.  +.-..+.|||||.+| +||+.||.+.+|+-.
T Consensus       422 ----kk----------------------------------K~feGh~vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  422 ----KK----------------------------------KRFEGHSVAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK  462 (503)
T ss_pred             ----Hh----------------------------------hhhcceeccCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence                00                                  0122332  235788999999999 999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=2.9e-26  Score=203.06  Aligned_cols=238  Identities=14%  Similarity=0.206  Sum_probs=203.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  +-+.|++|++.+++++.|.+|+.||+++|++...+++|..-++.+.  +.                       
T Consensus        89 HsgAV--M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~-----------------------  141 (338)
T KOG0265|consen   89 HSGAV--MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS-----------------------  141 (338)
T ss_pred             cccee--EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence            46889  4459999999999999999999999999999999998876555433  11                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                       +.+..++.+++.||++++||+++.+.+..+  ....+++++.|..++..+.+|+-|+.|++||++.+....++.+|.+.
T Consensus       142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt  218 (338)
T KOG0265|consen  142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT  218 (338)
T ss_pred             -ccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence             113678899999999999999998887555  24568999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCC----CeeeEEeecCCC----CEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSD----HKKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~----~~~~~~~~~h~~----~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      |+.+..+|+|.++.+-+  .++++||++.    .+++..+.+|..    .....+|+|+++++-+++ .|+.+++||...
T Consensus       219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~  297 (338)
T KOG0265|consen  219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS  297 (338)
T ss_pred             eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence            99999999999999988  8999999985    345778877653    345679999999887776 699999999887


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      ..     .++.++.+...+.++.|.     |....|.+++.|.+|++=.
T Consensus       298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEeec
Confidence            55     568888888888899887     9999999999999998743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=4.4e-26  Score=207.93  Aligned_cols=271  Identities=14%  Similarity=0.176  Sum_probs=211.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      ++++++|++||.++|||. .|++...+.+|.+++.                  .+.|...++.      ...+++++.|.
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik------------------~v~~v~~n~~------~~~fvsas~Dq  169 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIK------------------SVAWVIKNSS------SCLFVSASMDQ  169 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecCCccee------------------eeEEEecCCc------cceEEEecCCc
Confidence            689999999999999997 5888888887765544                  4455544433      45799999999


Q ss_pred             eEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-------------------------C
Q 008041           97 DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------------------------T  148 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-------------------------~  148 (579)
                      ++++|....++.....   ..||...|-++...++|..+++|+.|.++.+|+..                         +
T Consensus       170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence            9999999887653222   25899999999999999999999999999999932                         1


Q ss_pred             CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      +.++.++.+|..+|.++.|++ ...+.+++  .+|+.||+.+++.+.++.+ ....+++..+|..+.|++++ .|+.+++
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl  326 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL  326 (423)
T ss_pred             cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence            235667889999999999998 56777887  8999999999999888874 56789999999999888887 6999999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce-eecccCCeeEEeeeccCCcc
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ||++++...  ...+++..|...+..+.+++    .+..+|++++.||++++||+++.+ .+..+..+...+.+.+    
T Consensus       327 ~DPR~~~gs--~v~~s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd----  396 (423)
T KOG0313|consen  327 WDPRTGDGS--VVSQSLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD----  396 (423)
T ss_pred             cCCCCCCCc--eeEEeeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe----
Confidence            999998533  23445555666777777772    244678999999999999999887 7777766666655444    


Q ss_pred             cccccchhhhhccccceecCCc
Q 008041          306 SQKSATAAIFAAKLQDIVKPAS  327 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~  327 (579)
                       ..... .|++|+.|+.++++.
T Consensus       397 -W~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  397 -WNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             -ccCCc-eEEeccCcceEEEec
Confidence             22222 788888887666543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3e-26  Score=224.32  Aligned_cols=271  Identities=16%  Similarity=0.232  Sum_probs=218.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|+ ..+.||.|. ...|.+|+..++.........                  ...++++.|.+.         +.+|++
T Consensus       184 dWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~Lav  234 (484)
T KOG0305|consen  184 DWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLAV  234 (484)
T ss_pred             hcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEEE
Confidence            677 455777776 447999999999866544321                  345667777765         889999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEEccC
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSD  170 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~  170 (579)
                      |..+|.|.|||..+.+.+..+...|...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus       235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence            99999999999999888866644499999999996  66799999999999999998766555 8899999999999999


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEe-cCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++++|+|+  +.+.|||....+++.++..|.+.|..++|+|-. ..|++|| ..|+.|++||..++...     .... .
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vd-t  386 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVD-T  386 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----cccc-c
Confidence            99999999  899999998888999999999999999999954 4566643 47899999999988643     3333 3


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceec
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK  324 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  324 (579)
                      ...+..+.|+     +..+-|+++.  .++.|.||+..+.+.+                                     
T Consensus       387 gsQVcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~~-------------------------------------  424 (484)
T KOG0305|consen  387 GSQVCSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKLV-------------------------------------  424 (484)
T ss_pred             CCceeeEEEc-----CCCCEEEEecCCCCCcEEEEecccccee-------------------------------------
Confidence            3445566666     6766666653  3779999987663321                                     


Q ss_pred             CCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                        ..+.+|...|..+++||||..+ ++|+.|.++++|++-
T Consensus       425 ------------------~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  425 ------------------AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLF  461 (484)
T ss_pred             ------------------eeecCCcceeEEEEECCCCCEE-EEecccCcEEecccc
Confidence                              1456899999999999999999 999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=5e-26  Score=210.84  Aligned_cols=275  Identities=19%  Similarity=0.260  Sum_probs=222.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      ...|....+++|+.|..+.++|..+++.+..|+||.-.+....|++.                           ...+++
T Consensus       226 d~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~v~~  278 (506)
T KOG0289|consen  226 DIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDTVIT  278 (506)
T ss_pred             eecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhheee
Confidence            45555578999999999999999999999999999887777777766                           667899


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--CCCeeEEEEcc
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMAVSS  169 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~l~~~p  169 (579)
                      ++.|-.|+||........ .....|..+|+.+..+|.|.||++++.|++..+.|+++|.++......  .-.+++.+|+|
T Consensus       279 aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             cCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            999999999999877755 334679999999999999999999999999999999999988776542  23699999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc
Q 008041          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      ||.+|.+|.  +.+++||+.++..+..|++|.++|..++|+.+|-||++++ +|+.|++||++..+..   ..+.+... 
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~~~-  432 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLDEK-  432 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeecccc-
Confidence            999999998  9999999999999999999999999999999999999988 7999999999987643   22333222 


Q ss_pred             eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCc
Q 008041          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  327 (579)
                      ..+..+.|+     +.|.+|+.++.|=+|++++-.+.                     .+.                   
T Consensus       433 ~~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k---------------------~W~-------------------  467 (506)
T KOG0289|consen  433 KEVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK---------------------SWT-------------------  467 (506)
T ss_pred             ccceeEEEc-----CCCCeEEeecceeEEEEEecccc---------------------cce-------------------
Confidence            245667777     89999999987766666642111                     000                   


Q ss_pred             eEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                   ....+..|.+....+.|..+.+++ +++|.|...++..
T Consensus       468 -------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a  504 (506)
T KOG0289|consen  468 -------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA  504 (506)
T ss_pred             -------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence                         011222455567778888888899 9999998876653

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.5e-25  Score=226.14  Aligned_cols=238  Identities=13%  Similarity=0.175  Sum_probs=177.8

Q ss_pred             ccCCCEEEE------EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           14 SPALDYFAI------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        14 spdg~~las------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..++.++|.      |+.++.|++|+......+..+.+|...+.                  ++.|.|.+        +.
T Consensus        35 a~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~------------------~lafsP~~--------~~   88 (568)
T PTZ00420         35 ACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSIL------------------DLQFNPCF--------SE   88 (568)
T ss_pred             eeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEE------------------EEEEcCCC--------CC
Confidence            334555554      45678899998877777777776655554                  55555432        57


Q ss_pred             EEEEEECCCeEEEEEccCCeE-E------EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           88 LLVLGTGGGDVLALAVSAGQL-K------WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~-~------~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +|++|+.||.|++||+.++.. .      ...+.+|...|.+++|+|++.. +++++.|++|++||+++++....+. +.
T Consensus        89 lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~  167 (568)
T PTZ00420         89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP  167 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC
Confidence            899999999999999986421 1      1234689999999999999876 5789999999999999998877776 56


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEE-----EEecCCCEEEEEecCC---CeEEEEEc
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRT  229 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l-----~~s~~~~~l~s~~~~d---~~i~vwd~  229 (579)
                      ..|.+++|+|+|++|++++  +.|++||+++++.+.++.+|.+.+...     .|++++.+++++|..+   +.|++||+
T Consensus       168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl  247 (568)
T PTZ00420        168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL  247 (568)
T ss_pred             CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence            7899999999999999887  899999999999999999998875443     3458889999987432   47999999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      +.....  .....+......+...+..     ++|.++++|+.|+.|++|++..+.
T Consensus       248 r~~~~p--l~~~~ld~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        248 KNTTSA--LVTMSIDNASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCCCCc--eEEEEecCCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCCc
Confidence            964322  1222333333333223333     678999999999999999987663

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=6.2e-26  Score=230.90  Aligned_cols=236  Identities=18%  Similarity=0.307  Sum_probs=202.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ++..|.  +.++++++.|++|++||..++..+.. +.+|.+.+..+.|...                           +.
T Consensus       212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~  262 (537)
T KOG0274|consen  212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD  262 (537)
T ss_pred             hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence            444565  56899999999999999999998888 9999888877666543                           67


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      .+++|+.|.++++||..+|++...+ .+|.+.|.++...  +..+++|+.|.+|++|++.++..+.++.+|.++|.++..
T Consensus       263 ~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~  339 (537)
T KOG0274|consen  263 KLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL  339 (537)
T ss_pred             EEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence            8999999999999999999999776 6899999999874  457888999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      +  +.++++|+  +.|++||+.+++++.++.+|...|.++.+.+. ..+++++ .|++|++||+++..    .|+.++.+
T Consensus       340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~  411 (537)
T KOG0274|consen  340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG  411 (537)
T ss_pred             c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence            8  77888888  99999999999999999999999999988765 7888887 79999999999983    25567777


Q ss_pred             CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      +...+....       ..+++|++++.||+|++||..+++.++...
T Consensus       412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             Ccccccccc-------cccceeEeccccccEEEeecccCceeeeec
Confidence            766654333       467999999999999999998887766543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.4e-25  Score=194.55  Aligned_cols=240  Identities=14%  Similarity=0.193  Sum_probs=192.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++..||++  +|+|.|+|||+||.|.++.||.-..+  +++..+.+|...+.+++|+..                     
T Consensus        60 hkrsVRsv--Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---------------------  116 (312)
T KOG0645|consen   60 HKRSVRSV--AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---------------------  116 (312)
T ss_pred             chheeeee--eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---------------------
Confidence            34678777  99999999999999999999976543  678888888887777777666                     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeE
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGK  154 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~~~~~~~  154 (579)
                            +++|++++.|..|.||.+..+..  ....+++|+..|..+.|+|....|+++|.|.+|++|+-.   ...+.++
T Consensus       117 ------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t  190 (312)
T KOG0645|consen  117 ------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT  190 (312)
T ss_pred             ------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence                  89999999999999999986543  234558899999999999999999999999999999865   3468999


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      +.+|.+.|.+++|+|.|..|++++  ++++||-..+.-    -.-|..++..+.|. ++ .|++++ .|+.|++|.-...
T Consensus       191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~g-gD~~i~lf~~s~~  263 (312)
T KOG0645|consen  191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG-VIASGG-GDDAIRLFKESDS  263 (312)
T ss_pred             ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc-ceEecc-CCCEEEEEEecCC
Confidence            999999999999999999999998  899999865321    12477889999998 44 688887 7999999986643


Q ss_pred             ccc-cceeee-eeecCceeEEeEEecCCcccCC-CcEEEEEEcCCeEEEEEcC
Q 008041          233 KKQ-SASCVL-AMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       233 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~  282 (579)
                      -.. ....+. ....+...+.++.+.     |. +.+|++++.||.|++|.+.
T Consensus       264 ~d~p~~~l~~~~~~aHe~dVNsV~w~-----p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  264 PDEPSWNLLAKKEGAHEVDVNSVQWN-----PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCchHHHHHhhhcccccccceEEEc-----CCCCCceeecCCCceEEEEEec
Confidence            111 111111 223445577888887     74 6889999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.8e-26  Score=196.96  Aligned_cols=282  Identities=14%  Similarity=0.163  Sum_probs=214.4

Q ss_pred             eEEEEccC-CCEEEEEe-------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            9 ILTSFSPA-LDYFAICS-------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         9 l~~~fspd-g~~lasg~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++.|||= .++||.+.       ..|++.|.+...++-+.++..-.                .....-.++|.+..   
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d----------------~~D~LfdV~Wse~~---   72 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD----------------TEDGLFDVAWSENH---   72 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee----------------cccceeEeeecCCC---
Confidence            45699992 23444332       36899999986555444443111                01233356676654   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                           .+.+++++.||.+++||...........++|...|.++.|++ +++.++++|.|++|++|+...++.+++|++|.
T Consensus        73 -----e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~  147 (311)
T KOG0277|consen   73 -----ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN  147 (311)
T ss_pred             -----cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence                 678999999999999997665544455688999999999998 45568888999999999999999999999999


Q ss_pred             CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       160 ~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      ..|....|+| .++++++++  +.+++||++.......+..|...|.++.|+.-...++..|+.|+.|+.||++.-+.  
T Consensus       148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--  225 (311)
T KOG0277|consen  148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--  225 (311)
T ss_pred             cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--
Confidence            9999999999 567888877  89999999975444458999999999999976655554455899999999998763  


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCC-CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                        .++.+..+...++-+.|+     |. ...|++++.|=+++|||.......                            
T Consensus       226 --pl~eL~gh~~AVRkvk~S-----ph~~~lLaSasYDmT~riw~~~~~ds~----------------------------  270 (311)
T KOG0277|consen  226 --PLFELNGHGLAVRKVKFS-----PHHASLLASASYDMTVRIWDPERQDSA----------------------------  270 (311)
T ss_pred             --cceeecCCceEEEEEecC-----cchhhHhhhccccceEEecccccchhh----------------------------
Confidence              356777888888888888     54 457889999999999986432211                            


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceeccccee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~  378 (579)
                                                .+++.-|+..+..+.||+ ++.++ ++++.|.++++|+
T Consensus       271 --------------------------~e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~  307 (311)
T KOG0277|consen  271 --------------------------IETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN  307 (311)
T ss_pred             --------------------------hhhhhccceEEeccccccccCcee-eecccccceeeec
Confidence                                      112335777788888886 55567 9999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=4.2e-25  Score=242.94  Aligned_cols=241  Identities=18%  Similarity=0.251  Sum_probs=194.4

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++|  .+++|+| ++.+||+++.||+|+|||+.+++.+..+.+|...+.++.|+                  +.+     
T Consensus       533 ~~v--~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~------------------p~~-----  587 (793)
T PLN00181        533 SKL--SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS------------------SAD-----  587 (793)
T ss_pred             Cce--eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEc------------------CCC-----
Confidence            345  3458887 47899999999999999999999988888776655554444                  322     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~  160 (579)
                         +.+|++|+.||.|++||+.++..+..+.  +...|.++.|+ ++|.++++|+.||.|++||+++++ ....+.+|..
T Consensus       588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence               6789999999999999999998876663  33689999995 578999999999999999998765 5677889999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .|.++.|. ++..+++++  ++|++||++.      .+.+.++.+|...+..+.|+|++.+|++++ .|+.|++|+....
T Consensus       663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~  740 (793)
T PLN00181        663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP  740 (793)
T ss_pred             CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence            99999997 677888887  8999999974      356788999999999999999999999988 7999999998655


Q ss_pred             ccccc------ee--eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          233 KKQSA------SC--VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       233 ~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .....      ..  -....++...+..++|+     |++..|++++.||.|++|++
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence            32200      00  00112344567888887     99999999999999999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.4e-26  Score=214.63  Aligned_cols=231  Identities=14%  Similarity=0.177  Sum_probs=194.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++.|-.||++||+|+..|.|+|||..+...+..+..|..++....|++.                          ++..
T Consensus        72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--------------------------d~t~  125 (487)
T KOG0310|consen   72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--------------------------DNTM  125 (487)
T ss_pred             eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc--------------------------CCeE
Confidence            44589999999999999999999997776667778888888877777665                          2778


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~  166 (579)
                      +++|+.|+.+++||+.+.... ..+.+|++.|.|.+|+|... .++|||.||.|++||++.. ..+..+. |..+|..+.
T Consensus       126 l~s~sDd~v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl  203 (487)
T KOG0310|consen  126 LVSGSDDKVVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL  203 (487)
T ss_pred             EEecCCCceEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence            899999999999999999874 34478999999999999554 6899999999999999877 5555665 888999999


Q ss_pred             EccCCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          167 VSSDGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       167 ~~p~g~~l~~~~-~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +-|.|..+++++ +.+++||+.+| +.+..+..|...|+|+.+..++..|+++| -|+.+++||+.+-+     .+....
T Consensus       204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~  277 (487)
T KOG0310|consen  204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWK  277 (487)
T ss_pred             EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeee
Confidence            999999999999 79999999965 44555555999999999999999999998 69999999977655     456666


Q ss_pred             cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  279 (579)
                      .++.++++..+      |+++.++.|..||.+.+-
T Consensus       278 ~~~pvLsiavs------~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  278 YPGPVLSIAVS------PDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             cccceeeEEec------CCCceEEEecccceeeee
Confidence            77777665544      899999999999988765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=8.9e-27  Score=214.59  Aligned_cols=277  Identities=17%  Similarity=0.158  Sum_probs=218.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.|.++  .|-++...|++|+.|..|++|++..++  ...++.+..+.+....|.++                      
T Consensus       175 ~gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~----------------------  230 (459)
T KOG0288|consen  175 EGEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD----------------------  230 (459)
T ss_pred             cccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC----------------------
Confidence            4567556  999998999999999999999998776  45555555555555555444                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +..++.++.|+.+++|++...+...++ .+|++.|+++.|......+++|+.|.+|+.||+....+.+++-. ..
T Consensus       231 -----~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S  303 (459)
T KOG0288|consen  231 -----NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GS  303 (459)
T ss_pred             -----CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cc
Confidence                 778999999999999999999887665 68999999999988776799999999999999999888877542 34


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .+..|..+  +..+++|.  +.|+.||.++..+....+.+. .|+++..++++..+++++ .|.++.+.|+++....   
T Consensus       304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~---  376 (459)
T KOG0288|consen  304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR---  376 (459)
T ss_pred             cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE---
Confidence            55666665  45666776  899999999999999888765 999999999999999987 7999999999987643   


Q ss_pred             eeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          239 CVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      ..+.-.  .....++-+.|+     |++.|+++|+.||.|+||+..+++.-.....                        
T Consensus       377 ~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~------------------------  427 (459)
T KOG0288|consen  377 QTFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLSL------------------------  427 (459)
T ss_pred             EEeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEecc------------------------
Confidence            111111  011124445566     9999999999999999999988876432210                        


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCC-CcEEEeecCCcceeeccccceecccce
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                                                    .+.. .|++++|+|-|..+ ++++.++.+.+|
T Consensus       428 ------------------------------s~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW  458 (459)
T KOG0288|consen  428 ------------------------------STSNAAITSLSWNPSGSGL-LSADKQKAVTLW  458 (459)
T ss_pred             ------------------------------CCCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence                                          0111 68999999999999 999999999998

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-25  Score=219.06  Aligned_cols=240  Identities=19%  Similarity=0.254  Sum_probs=201.5

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .++.|+++|.+||.|..+|.|.|||..+.+.+..+.+                 +....+.|++|.         
T Consensus       218 ~~v--tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~---------  269 (484)
T KOG0305|consen  218 ELV--TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN---------  269 (484)
T ss_pred             Cce--EEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence            346  4459999999999999999999999998888877764                 224467788886         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        ...+.+|+.+|.|..+|++..+.......+|...|..+.|++|+.++++|+.|+.+.|||.....+...+..|...|.
T Consensus       270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence              456899999999999999988766555688999999999999999999999999999999988889999999999999


Q ss_pred             EEEEcc-CCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE-EecCCCeEEEEEcCCCccccc
Q 008041          164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p-~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      +++|+| ...+||+|+    +.|++||+.+++.+.... ..+.|.+|.|++..+.|++ .|..++.|.||+..+.+..  
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~--  424 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV--  424 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence            999999 566888887    699999999999988775 4578999999998865555 4555678999999886533  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                         ..+..|...+-.+.++     |||..+++|+.|.++++|++-+.
T Consensus       425 ---~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  425 ---AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence               3444455556666676     99999999999999999997654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.5e-26  Score=195.77  Aligned_cols=237  Identities=16%  Similarity=0.228  Sum_probs=189.5

Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg-~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++||++. +.+++++.||++++||... ...++.++.|..++.                  .+.|.+..        ..
T Consensus        65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~------------------Svdwn~~~--------r~  118 (311)
T KOG0277|consen   65 DVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY------------------SVDWNTVR--------RR  118 (311)
T ss_pred             EeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE------------------Eecccccc--------ce
Confidence            34899865 5778888899999999642 335666776665554                  34444433        56


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      .+++++-||+|++|+...++.+.++ .+|...|....|+| ..+.|+++|.|+++++||++.......+..|...+.|+.
T Consensus       119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd  197 (311)
T KOG0277|consen  119 IFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD  197 (311)
T ss_pred             eEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence            7888899999999999999988776 78999999999999 667899999999999999986555555999999999999


Q ss_pred             Ecc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041          167 VSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       167 ~~p-~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      |+. +.+++++|+  +.|+.||+++- .++..+.+|.-.|+.++|||...-++++++.|-++++||...+..    ++.+
T Consensus       198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds----~~e~  273 (311)
T KOG0277|consen  198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS----AIET  273 (311)
T ss_pred             ccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh----hhhh
Confidence            997 556777777  89999999975 458888999999999999997654444444899999999986542    3455


Q ss_pred             eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      ..++...+..+.|+.    -++.++|+++.|+.++||+.
T Consensus       274 ~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  274 VDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhccceEEecccccc----ccCceeeecccccceeeecc
Confidence            668888888887872    36789999999999999983

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=207.10  Aligned_cols=238  Identities=17%  Similarity=0.208  Sum_probs=199.1

Q ss_pred             CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCccccccccccccccccccccccceEEeeecccc
Q 008041            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         1 ~~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      |...+|  +|++||.|...||+|+.||.|+||.+.+|.|++.|. .|...+.++.|+.+                     
T Consensus       261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD---------------------  317 (508)
T KOG0275|consen  261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD---------------------  317 (508)
T ss_pred             ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---------------------
Confidence            567899  888999999999999999999999999999999987 66666776666666                     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                            +..+++++.|.++++.-+.+|+++..+ .+|++-|+...|.+||.++++++.||+|++|+..+.+++.+|+...
T Consensus       318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence                  778999999999999999999998777 7999999999999999999999999999999999999999988644


Q ss_pred             C--CeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 K--GISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~--~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .  +|+++-.-|.+ ..++++.  +++++-++ .|+.++.|...   .+...+...+|.|.++++.+ +|+.++.|...+
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s  468 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS  468 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence            3  78888888754 5677776  89999987 57788888532   35566778899999999988 899999999999


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      ++..     .++.-+...+-.+...     |..+.|++=++||.+++|.
T Consensus       469 G~LE-----~tl~VhEkdvIGl~HH-----PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  469 GKLE-----RTLPVHEKDVIGLTHH-----PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             Ccee-----eeeecccccccccccC-----cccchhhhhcccchhhhcC
Confidence            8755     2333333333334444     8889999999999999994

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=212.16  Aligned_cols=284  Identities=14%  Similarity=0.172  Sum_probs=197.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +..|  .++++.|.|..|++||.|..|++||...... ...|+...              -.....+..+.|.+.     
T Consensus       167 tk~V--sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--------------P~E~h~i~sl~ys~T-----  225 (641)
T KOG0772|consen  167 TKIV--SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--------------PCETHQINSLQYSVT-----  225 (641)
T ss_pred             ceEE--EEeeecCCCceeeeccccceEEEEecccccccchhhhccC--------------cccccccceeeecCC-----
Confidence            3456  5569999999999999999999999875432 11122111              001223344444443     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEE-----------ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-----------~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~  149 (579)
                          +..|++.+.....+|+|-..-+....           ..+||...++|.+|+|+.+ .|++++.||++++||+...
T Consensus       226 ----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~  301 (641)
T KOG0772|consen  226 ----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT  301 (641)
T ss_pred             ----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence                78899999999999999765443211           1368999999999999665 5999999999999998754


Q ss_pred             c-eeeEeec-----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee---eEEeecCCC--CEEEEEEecCCCEEEE
Q 008041          150 S-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVLS  216 (579)
Q Consensus       150 ~-~~~~~~~-----~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~--~v~~l~~s~~~~~l~s  216 (579)
                      + ..+.|+.     ..-+++.++|+|||+.||+|.  |+|.+|+..+...   ...-..|..  .|++|.||+||++|++
T Consensus       302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence            3 3333432     223789999999999999988  9999999865322   223357776  8999999999999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc------CCeEEEEEcCCceeeccc
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~  290 (579)
                      -| .|+++++||++..+..-  .++.--.......-++|+     |+.+.|++|+.      .|.+.+||..+.+.+..+
T Consensus       382 Rg-~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  382 RG-FDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             cc-CCCceeeeeccccccch--hhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence            98 79999999999876431  111111122223445566     99999999964      568999999888877665


Q ss_pred             CCeeEEeeeccCCcccccccchhhhhccccceec
Q 008041          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK  324 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  324 (579)
                      .-....+.... +.|.    ++.|.+++.+|.++
T Consensus       454 ~i~~aSvv~~~-Whpk----LNQi~~gsgdG~~~  482 (641)
T KOG0772|consen  454 DISTASVVRCL-WHPK----LNQIFAGSGDGTAH  482 (641)
T ss_pred             cCCCceEEEEe-ecch----hhheeeecCCCceE
Confidence            54433332221 3333    45888888866433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=5.2e-25  Score=226.61  Aligned_cols=285  Identities=16%  Similarity=0.131  Sum_probs=216.1

Q ss_pred             eEEEEccCCCEEEEEe--CCCcEEEEECCCCe------------EEEEeccCccccccccccccccccccccccceEEee
Q 008041            9 ILTSFSPALDYFAICS--GDARIKIWDTLKGQ------------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         9 l~~~fspdg~~lasg~--~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      .++..+|||..+|+|+  .||.++||+.+.--            .+.....|.+                  .++|+.|.
T Consensus        17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~------------------sv~CVR~S   78 (942)
T KOG0973|consen   17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG------------------SVNCVRFS   78 (942)
T ss_pred             EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC------------------ceeEEEEC
Confidence            6679999999999999  89999999875311            1222223333                  45556665


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccC----------C--------eEEEEecCCCCCCEEEEEEccCCCEEEEEe
Q 008041           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------G--------QLKWRLSDCHPGGVSAISFATHGSCIYSAG  136 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----------~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~  136 (579)
                      +.         +.++|+|+.|+.|.||....          |        +++ ..+.+|...|.+++|+|++.++++++
T Consensus        79 ~d---------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   79 PD---------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             CC---------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEec
Confidence            53         88999999999999999883          0        122 33478999999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC------CCEEEEEEe
Q 008041          137 ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS  208 (579)
Q Consensus       137 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~------~~v~~l~~s  208 (579)
                      .|++|.+||..+.+.+.++++|.+.|..+.|+|-|++||+-+  ++|++|.+.+....+.+.++.      .....+.|+
T Consensus       149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            999999999999999999999999999999999999999987  899999988766666665443      346789999


Q ss_pred             cCCCEEEEEecCCC---eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc------------EEEEEEcC
Q 008041          209 DNGKYVLSSAVGER---YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISET  273 (579)
Q Consensus       209 ~~~~~l~s~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~d  273 (579)
                      |||++|++.-.-.+   ++.|.+-.+.+     .-..+-.|...+.++.|++..+.....            .+|+|+.|
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk-----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWK-----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCce-----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            99999998643333   56666654443     223444555578888888654432222            67888999


Q ss_pred             CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008041          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (579)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (579)
                      ++|.||.....+++.                           .+..                           .....|.
T Consensus       304 rSlSVW~T~~~RPl~---------------------------vi~~---------------------------lf~~SI~  329 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLF---------------------------VIHN---------------------------LFNKSIV  329 (942)
T ss_pred             ccEEEEecCCCCchh---------------------------hhhh---------------------------hhcCcee
Confidence            999999864433321                           1111                           1223789


Q ss_pred             EEeecCCcceeeccccceecccceeeee
Q 008041          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      .++|+|||..| +.+|.|+++.+-.+++
T Consensus       330 DmsWspdG~~L-facS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  330 DMSWSPDGFSL-FACSLDGTVALIHFEE  356 (942)
T ss_pred             eeeEcCCCCeE-EEEecCCeEEEEEcch
Confidence            99999999999 9999999999988753

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=4.9e-24  Score=216.97  Aligned_cols=204  Identities=14%  Similarity=0.195  Sum_probs=162.7

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCe-------EEEEeccCccccccccccccccccccccccceEEe
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      ++++|  .+++|+| ++++||+|+.||+|+|||+.++.       .+..+.+|..                  .+.++.|
T Consensus        74 H~~~V--~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~------------------~V~~l~f  133 (493)
T PTZ00421         74 QEGPI--IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK------------------KVGIVSF  133 (493)
T ss_pred             CCCCE--EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC------------------cEEEEEe
Confidence            35678  5559999 88999999999999999997653       2344444443                  3455666


Q ss_pred             eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008041           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  153 (579)
                      .|..        ..+|++|+.|+.|++||+.+++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+.
T Consensus       134 ~P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~  204 (493)
T PTZ00421        134 HPSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS  204 (493)
T ss_pred             CcCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence            5542        468999999999999999999877555 6799999999999999999999999999999999999999


Q ss_pred             EeecCCCC-eeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          154 KFRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       154 ~~~~~~~~-v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~-~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                      .+.+|.+. +..+.|.|++..+++++      +.|++||+++.. .+.....+ ...+....|+++++++++++..|+.|
T Consensus       205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            99888764 45778999888777653      689999998754 34333333 34566678899999998887569999


Q ss_pred             EEEEcCCCcc
Q 008041          225 ALWRTDGVKK  234 (579)
Q Consensus       225 ~vwd~~~~~~  234 (579)
                      ++||+..++.
T Consensus       285 riwdl~~~~~  294 (493)
T PTZ00421        285 RCFELMNERL  294 (493)
T ss_pred             EEEEeeCCce
Confidence            9999998763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=216.16  Aligned_cols=232  Identities=17%  Similarity=0.242  Sum_probs=189.7

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        15 pdg~~lasg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      |+++||.+||.||.|++|+...-.      +...++.|...++.++....                           +..
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t   87 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT   87 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence            467899999999999999875322      35556666666665554433                           667


Q ss_pred             EEEEECCCeEEEEEccCCe-EEEEecCCCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEeCCCC--ceeeE--------ee
Q 008041           89 LVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------FR  156 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~-~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~--------~~  156 (579)
                      +++++.|-+|++|+...+. .....+..|.+-|.|+++ .++...+++||.|+.|.+||+.++  +.+..        +.
T Consensus        88 lIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~  167 (735)
T KOG0308|consen   88 LISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG  167 (735)
T ss_pred             eEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence            9999999999999998874 222444789999999999 888889999999999999999977  22222        22


Q ss_pred             -cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          157 -ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       157 -~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                       ++..+|++++.++.|..+++|+  +.+++||.++++.+..+.||...|..+..++||+.+++++ .||+|++||+....
T Consensus       168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQR  246 (735)
T ss_pred             CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccccc
Confidence             6778999999999999999998  8999999999999999999999999999999999999998 59999999999876


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                           |+.+...+...+-....+     |+=.++.+|+.||.|+.=|+.+.
T Consensus       247 -----Cl~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  247 -----CLATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             -----eeeeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCc
Confidence                 445555555445555555     77789999999999999888773

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=194.26  Aligned_cols=241  Identities=19%  Similarity=0.268  Sum_probs=192.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|+++  |.  +|.|+|+||.|.+|+|||+........+..|.+.++++.|.+++.                     
T Consensus        42 H~~sitav--AV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S---------------------   96 (362)
T KOG0294|consen   42 HAGSITAL--AV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS---------------------   96 (362)
T ss_pred             cccceeEE--Ee--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------------
Confidence            45778444  54  689999999999999999999998888888888888777776621                     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          .+.|++|+.||.|.+|+....+++..+ ++|.+.|+.++.+|.|+..++.+.|+.++.||+-+|+.-...+- ...
T Consensus        97 ----~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~  170 (362)
T KOG0294|consen   97 ----KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK  170 (362)
T ss_pred             ----hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence                236899999999999999999887655 78999999999999999999999999999999999876555442 233


Q ss_pred             eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+.+.|+|.|.+++.+. +.|-+|.+.+......+. ....+.++.|-. +.++++|+ +|+.|.+||.......    .
T Consensus       171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~  243 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----T  243 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEec-CCceEEEeccCCCccc----e
Confidence            45599999999888888 899999998877665554 234567777754 45778887 6999999999885432    2


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      ....|...+-.+..+.    .|++.+|++++.||.|++||++..
T Consensus       244 ~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  244 EFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEcccc
Confidence            3345666666666565    378899999999999999998654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=1e-24  Score=222.11  Aligned_cols=239  Identities=20%  Similarity=0.278  Sum_probs=199.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+.|  .+++|..-+.+|++|+.|.+++|||..+|.+...+.+|...+.++...                         
T Consensus       248 H~g~V--~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-------------------------  300 (537)
T KOG0274|consen  248 HFGGV--WGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-------------------------  300 (537)
T ss_pred             CCCCc--eeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence            56778  455887778899999999999999999999999999887766543332                         


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          ...+++|+.|.+|++|++.++.++..+ .+|.++|.++..+  +.++++|+.|++|++||..+++++.++.+|...
T Consensus       301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR  373 (537)
T ss_pred             ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence                345677899999999999999998555 6699999999996  789999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      |+++.+.+. +.+++|+  ++|++||+++. +++.++.+|...+..+.+.  +++|++++ .|++|++||...++..   
T Consensus       374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~~---  446 (537)
T KOG0274|consen  374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGECL---  446 (537)
T ss_pred             EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCcee---
Confidence            999988765 7888888  89999999999 9999999999999776654  66888887 7999999999988743   


Q ss_pred             eeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        ..+.. +...+..+.+       ....+++++.||.+++||+++++..+..
T Consensus       447 --~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  447 --RTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             --eeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence              44444 2233333332       2377899999999999999999887644

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.3e-24  Score=191.31  Aligned_cols=287  Identities=17%  Similarity=0.190  Sum_probs=195.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+.|  .+++||.||++||+++.|+.|+||+++.....    .|..--.      .++.+    ..+.+.|.|.-    
T Consensus        85 H~~~v--t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~~R~------nve~d----hpT~V~FapDc----  144 (420)
T KOG2096|consen   85 HKKEV--TDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRCIRQ------NVEYD----HPTRVVFAPDC----  144 (420)
T ss_pred             cCCce--eeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhHhhc------cccCC----CceEEEECCCc----
Confidence            35678  45599999999999999999999999864321    1110000      00001    11222332221    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe---EE--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~---~~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~  150 (579)
                          ...++.+-....+++|.....+   ..        ..+.+.|...|..+-...++.+|++++.|..|.+|+++ |+
T Consensus       145 ----~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  145 ----KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             ----ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence                3344445555568888875322   11        11334577788888888899999999999999999998 99


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---C-----eeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---H-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      .+..+......-+..+++|+|+++++++  -.+++|.+--   |     ..+..++||.+.|..++|+|+++.+++.+ .
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-k  298 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-K  298 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-c
Confidence            9999887777778899999999999998  7899997632   2     34667899999999999999999999998 7


Q ss_pred             CCeEEEEEcCCCccc--cceeee----ee-ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          221 ERYIALWRTDGVKKQ--SASCVL----AM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       221 d~~i~vwd~~~~~~~--~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      ||++++||.+-.-..  ......    .+ ......+ -+..+     |+|+.|+... ...+++|..++++.....   
T Consensus       299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~-gs~l~~~~se~g~~~~~~---  368 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSF-GSDLKVFASEDGKDYPEL---  368 (420)
T ss_pred             CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeec-CCceEEEEcccCccchhH---
Confidence            999999998643110  000000    01 1112222 23344     8888776654 356888876665443211   


Q ss_pred             eEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008041          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~  373 (579)
                                                                       +  ..|...|.+++|++||+++ +|++ |+.
T Consensus       369 -------------------------------------------------e--~~h~~~Is~is~~~~g~~~-atcG-dr~  395 (420)
T KOG2096|consen  369 -------------------------------------------------E--DIHSTTISSISYSSDGKYI-ATCG-DRY  395 (420)
T ss_pred             -------------------------------------------------H--HhhcCceeeEEecCCCcEE-eeec-cee
Confidence                                                             1  1578889999999999999 9998 666


Q ss_pred             ccce
Q 008041          374 KRGR  377 (579)
Q Consensus       374 ~~~w  377 (579)
                      +++.
T Consensus       396 vrv~  399 (420)
T KOG2096|consen  396 VRVI  399 (420)
T ss_pred             eeee
Confidence            5554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2e-24  Score=222.42  Aligned_cols=244  Identities=18%  Similarity=0.199  Sum_probs=192.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC------------------eEEEEeccCccccccccccccccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------------------QVQTEFADIASTETTSLYGNRLEREH   63 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (579)
                      +.++|  -|+.|||||+|||+||.|+.|.||+....                  ++...+.+|..               
T Consensus        68 h~~sv--~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~---------------  130 (942)
T KOG0973|consen   68 HDGSV--NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS---------------  130 (942)
T ss_pred             ccCce--eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC---------------
Confidence            45778  55599999999999999999999997731                  13334444444               


Q ss_pred             cccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008041           64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE  143 (579)
Q Consensus        64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~i  143 (579)
                         .+..+.|.|.         +.++++++.|+.|.+||..+.+.+..+ .+|.+.|.++.|.|-|+||++-+.|++|++
T Consensus       131 ---DV~Dv~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikv  197 (942)
T KOG0973|consen  131 ---DVLDVNWSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKV  197 (942)
T ss_pred             ---ccceeccCCC---------ccEEEEecccceEEEEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEE
Confidence               4455556553         789999999999999999999777555 799999999999999999999999999999


Q ss_pred             EeCCCCceeeEeecCC------CCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC-
Q 008041          144 IDPLTGSLLGKFRAST------KGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-  210 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~------~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-  210 (579)
                      |++.+....+.+..+.      ..+..+.|+|||++|++..      .++.|.+-.+.+.-..|-||.+++.++.|+|. 
T Consensus       198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence            9988777777666543      3678999999999999976      48999998888888889999999999999972 


Q ss_pred             -------C-------CE-EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041          211 -------G-------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       211 -------~-------~~-l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  275 (579)
                             |       .| +++.|+.|++|.||.....++.    .....-....+.-+.|+     |||..|+++|.||+
T Consensus       278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl----~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DGt  348 (942)
T KOG0973|consen  278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL----FVIHNLFNKSIVDMSWS-----PDGFSLFACSLDGT  348 (942)
T ss_pred             hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch----hhhhhhhcCceeeeeEc-----CCCCeEEEEecCCe
Confidence                   1       11 4555568999999998665432    11112223344556666     99999999999999


Q ss_pred             EEEEEcCCc
Q 008041          276 CYIWYGQNI  284 (579)
Q Consensus       276 i~iwd~~~~  284 (579)
                      |.++.++..
T Consensus       349 V~~i~Fee~  357 (942)
T KOG0973|consen  349 VALIHFEEK  357 (942)
T ss_pred             EEEEEcchH
Confidence            999987654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.9e-25  Score=202.96  Aligned_cols=240  Identities=16%  Similarity=0.291  Sum_probs=193.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..||  ..+.||||.+||++|+.|..+++||+.+|.+...+..                + ++...++++|.|.      
T Consensus       269 ~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD------  323 (519)
T KOG0293|consen  269 SQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD------  323 (519)
T ss_pred             cCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC------
Confidence            4577  6679999999999999999999999999998876641                2 3556778999986      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++|+.|+.+..||...+..- ....-....|.+++..+||+++++.+.|..+++++.++......+. ...+|
T Consensus       324 ---g~~~V~Gs~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~i  398 (519)
T KOG0293|consen  324 ---GFRFVTGSPDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPI  398 (519)
T ss_pred             ---CceeEecCCCCcEEEecCCcchhh-cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCce
Confidence               666999999999999999866532 2212233569999999999999999999999999987665554444 45689


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE--EEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ++.+++.||+++++.-  ..|++||++..+.++++.||...-  ..-+|-- +..++++|+ +|+.|+||+..+++.   
T Consensus       399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkl---  474 (519)
T KOG0293|consen  399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKL---  474 (519)
T ss_pred             eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCce---
Confidence            9999999999988876  899999999999999999998542  2224543 446777765 899999999999874   


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                        +..+..+...+.|+.|++    .+..++|+++.||+|+||...
T Consensus       475 --l~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  475 --LAVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             --eEeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCC
Confidence              467778888899999983    256789999999999999754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=8.5e-26  Score=194.84  Aligned_cols=242  Identities=15%  Similarity=0.240  Sum_probs=204.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  +.++.+.+...-|+++.|-+-+|||.-+|..+..|. |..-+....|+.+                        
T Consensus        59 kgav--w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------  111 (334)
T KOG0278|consen   59 KGAV--WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------  111 (334)
T ss_pred             Ccce--eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence            4677  767888888888999999999999999999988875 4445555555554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         ...|++|+.+.-++|||++..+....-..+|++.|..+-|....+.|++++.|++|++||.+++..++++. ...+|
T Consensus       112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V  187 (334)
T KOG0278|consen  112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV  187 (334)
T ss_pred             ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence               67799999999999999998776544457899999999999988999999999999999999999999887 46789


Q ss_pred             eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++.++++|+++.++. +.|..||..+...++.+. -...|.+...+|+...+++++ +|..++.||..++....   .+
T Consensus       188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~---~~  262 (334)
T KOG0278|consen  188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIG---SY  262 (334)
T ss_pred             cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCceee---ec
Confidence            9999999999999998 899999999988888775 456789999999998888777 89999999999997551   12


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      . ..+...+.|+.|+     |+|...++||+||+|++|....++.
T Consensus       263 n-kgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 N-KGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             c-cCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence            2 3445567888898     9999999999999999998665544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.8e-25  Score=202.70  Aligned_cols=261  Identities=16%  Similarity=0.166  Sum_probs=208.0

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      ..+++|+.||.|++||+...++...+ ++|.+.|.++++..  ..+++++.|.+|+.|-+. +.+..++.+ ...+..+.
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~~gId  154 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVYLGID  154 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeec-cccccccc
Confidence            56899999999999999999988666 78999999999976  578899999999999975 457777765 45677888


Q ss_pred             EccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       167 ~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      -+..+..+++++..|.|||.+-..++..+......|.++.|+|....++.++..|+.|.+||++...... ..+..+   
T Consensus       155 h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~m---  230 (433)
T KOG0268|consen  155 HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTM---  230 (433)
T ss_pred             cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeec---
Confidence            8888889999999999999998889999998889999999999877665555579999999999987552 122222   


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce-eecccCCeeEEeeeccCCcccccccchhhhhccccceecC
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                        -...++|+     |.+-.++++++|..++.||....+ .+..+..+...+...+ |+|.|+    .+++|+.|..+++
T Consensus       231 --RTN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~----EfvsgsyDksIRI  298 (433)
T KOG0268|consen  231 --RTNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQ----EFVSGSYDKSIRI  298 (433)
T ss_pred             --cccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cCCCcc----hhccccccceEEE
Confidence              22446676     888889999999999999987763 4556666666666666 899999    8999999987776


Q ss_pred             CceEEEEEeCCCCCceeEEEecCC---CCcEEEeecCCcceeeccccceecccceee
Q 008041          326 ASVHTFVAYGLLLKPSFQKILVNS---GEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +..     ......     -..|.   ..|.++.||.|.+|+ +|||+|+.+++|..
T Consensus       299 f~~-----~~~~SR-----diYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  299 FPV-----NHGHSR-----DIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA  344 (433)
T ss_pred             eec-----CCCcch-----hhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeec
Confidence            431     100000     01222   358999999999999 99999999999976

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=3.4e-23  Score=211.58  Aligned_cols=182  Identities=10%  Similarity=0.105  Sum_probs=142.5

Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCc--------eeeEeecCCCCe
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI  162 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v  162 (579)
                      |+..|.|++|+......+..+ .+|.++|.+++|+|+ +++|++|+.|++|++||+.++.        ++..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            455678999998876665444 789999999999996 7899999999999999997642        344678899999


Q ss_pred             eEEEEccCCCEE-EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       163 ~~l~~~p~g~~l-~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+++|+|++..+ ++++  +.|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||+++++..    
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i----  202 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA----  202 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE----
Confidence            999999998765 5665  899999999998877776 667899999999999998887 7999999999987633    


Q ss_pred             eeeeecCceeE--EeEEecCCcccCCCcEEEEEEcCC----eEEEEEcCC
Q 008041          240 VLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~  283 (579)
                       ..+..+....  ..++.  ..+++++.+|++++.|+    +|++||+++
T Consensus       203 -~tl~gH~g~~~s~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        203 -SSFHIHDGGKNTKNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             -EEEecccCCceeEEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence             3333332221  11111  11227889999988774    799999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=212.87  Aligned_cols=335  Identities=13%  Similarity=0.095  Sum_probs=234.1

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE---EeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +++|.|++...+|.+...|..|+|||++.-..+.   .+--|...+..+.--+-  .-| ...-             .-.
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~--nv~-~~~~-------------acl  390 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC--NVH-SPTA-------------ACL  390 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc--ccc-Cccc-------------ccC
Confidence            4788999999999999999999999998643321   12222222221111000  000 0000             001


Q ss_pred             CCcEEEEEECCCeEEEEEccCCe---EEEE-ec--------------------------------CCCCCCEEEEEEccC
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQ---LKWR-LS--------------------------------DCHPGGVSAISFATH  128 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~---~~~~-~~--------------------------------~~h~~~V~~l~~~~~  128 (579)
                      ....+.+++.||+|++||+..+.   ...+ ++                                -+-...+.+++.+|+
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence            25568999999999999998621   1100 00                                012246899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCE
Q 008041          129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAV  202 (579)
Q Consensus       129 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v  202 (579)
                      |++|++|..-|.+++||+.+-+....+.+|+..|.|+.|+-   ..++||+++  .-|+|||+.. -.++.++.+|...|
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99999999999999999999888889999999999999985   357888888  6899999874 45678899999999


Q ss_pred             EEEEEecCC--CEEEEEecCCCeEEEEEcCCCccccceeeeeeecC---ceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041          203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       203 ~~l~~s~~~--~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  277 (579)
                      +++.|.-.|  ..++++| .|+.|..-..+.....   .++...++   ...+.-+..     +|..++++++++|..|+
T Consensus       551 TsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g---~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSG---RLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             eEEEEeecCCceEEEecc-CchhhheehhccccCc---eeccccccccccceEEEeee-----CCCcceEEEEecccceE
Confidence            999998776  6778887 6887654332221111   11111111   112222333     38999999999999999


Q ss_pred             EEEcCCceeecccCCeeEEeeec--cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008041          278 IWYGQNIEELRNTKATKILSSSE--DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL  355 (579)
Q Consensus       278 iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~  355 (579)
                      |||++++++.+.+++....-...  ....|.+.    ++++.+.|..+-.+|        -....+..++.||...|+.+
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~~D--------f~sgEcvA~m~GHsE~VTG~  689 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCFVD--------FVSGECVAQMTGHSEAVTGV  689 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEEEE--------eccchhhhhhcCcchheeee
Confidence            99999999998877654331111  11244544    788888876433322        33456777888999999999


Q ss_pred             eecCCcceeeccccceecccceeee
Q 008041          356 NCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       356 ~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .|++|-++| +|.|.|+.|.+|.+-
T Consensus       690 kF~nDCkHl-ISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  690 KFLNDCKHL-ISVSGDGCIFVWKLP  713 (1080)
T ss_pred             eecccchhh-eeecCCceEEEEECc
Confidence            999999999 999999999999873

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=180.26  Aligned_cols=243  Identities=15%  Similarity=0.172  Sum_probs=189.2

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-----eeEeecCCCCeeEEEEcc----CCCEEEEEC-C--eE
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRASTKGISCMAVSS----DGKMLATAA-G--QL  181 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~p----~g~~l~~~~-~--~i  181 (579)
                      +.|.+.|.|.+|+|+|+.+++|+.|++|++.-+....+     -..|.-|.+.|..++|..    .|.++++++ |  .|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            56899999999999999999999999999976653322     234777899999999964    356788887 4  67


Q ss_pred             EEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-------cCceeEEeEE
Q 008041          182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-------HPAVFMDCRC  254 (579)
Q Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~  254 (579)
                      ++-|...|+.+..+.+|.+.|.++- +=+|-.+++++ .|.+|+.||++-...     +.++.       -....+..++
T Consensus       166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgs-qdktirfwdlrv~~~-----v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGS-QDKTIRFWDLRVNSC-----VNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccC-CCceEEEEeeeccce-----eeeccCcccCCCcccceeEEEE
Confidence            7778889999999999999998762 33466777766 899999999988653     33332       1124456666


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEe
Q 008041          255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY  334 (579)
Q Consensus       255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  334 (579)
                      ..     |.|+.|++|-.|....+||++.++.++.+.|+...+.+.. |+|...    ++++++.|..++..|     ..
T Consensus       239 vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-fsp~a~----yllt~syd~~ikltd-----lq  303 (350)
T KOG0641|consen  239 VD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-FSPGAH----YLLTCSYDMKIKLTD-----LQ  303 (350)
T ss_pred             EC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-eCCCce----EEEEecccceEEEee-----cc
Confidence            66     9999999999999999999999999999888887777665 777766    899999886555533     23


Q ss_pred             CCCCCceeE-EEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          335 GLLLKPSFQ-KILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       335 g~~~~~~~~-~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      |.......- .+..|...++.+.|.|..--+ +|.|.|++..+|-.
T Consensus       304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~  348 (350)
T KOG0641|consen  304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL  348 (350)
T ss_pred             cchhhcCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence            443333222 334599999999999998877 89999999999964

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=3.8e-24  Score=195.38  Aligned_cols=239  Identities=16%  Similarity=0.225  Sum_probs=187.7

Q ss_pred             CCCcccceEEEEc-cC--CCEEEEEeCCCcEEEEECCCCeEEEE----eccCccccccccccccccccccccccceEEee
Q 008041            2 GSSNIRDILTSFS-PA--LDYFAICSGDARIKIWDTLKGQVQTE----FADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         2 ~~~~V~~l~~~fs-pd--g~~lasg~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      +++||+++  ++- ++  ...|++++.|.++++|.++.+.....    -+||...+.++....+                
T Consensus       143 ht~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----------------  204 (423)
T KOG0313|consen  143 HTGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----------------  204 (423)
T ss_pred             CCcceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----------------
Confidence            35677544  332 22  23699999999999999987764322    2255555544443333                


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCC------------------------eEEEEecCCCCCCEEEEEEccCCC
Q 008041           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG------------------------QLKWRLSDCHPGGVSAISFATHGS  130 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~~~~~  130 (579)
                                 +..+++|+.|..|.+|+..+.                        +....++.+|+.+|.++.|++ ..
T Consensus       205 -----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~  272 (423)
T KOG0313|consen  205 -----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT  272 (423)
T ss_pred             -----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence                       888999999999999993210                        001233579999999999988 66


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCCEEEE
Q 008041          131 CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRFM  205 (579)
Q Consensus       131 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~---~~~~~~~h~~~v~~l  205 (579)
                      .+++++.|.+|+.||+.++..+.++.+ ...++|+..+|..++|++|+  ..|++||.+++.   ...+|.+|.+.|.++
T Consensus       273 v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv  351 (423)
T KOG0313|consen  273 VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV  351 (423)
T ss_pred             ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence            899999999999999999999988875 45899999999999999998  899999999763   356789999999999


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .|+|...+.+.+++.|+++++||+++.+.    .++.+..+...+-++.|.      ++..|++|+.|++|++|..
T Consensus       352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~----plydI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA----PLYDIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ecCCCCceEEEEEecCCeEEEEEeccCCC----cceeeccCCceEEEEecc------CCceEEeccCcceEEEecc
Confidence            99998887666666899999999999763    346666667777777784      7889999999999999964

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=3.2e-24  Score=187.03  Aligned_cols=276  Identities=13%  Similarity=0.126  Sum_probs=213.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +..|++.+  .|+.+|.+|.+|+.|.++.||-..+|+.+-++.+|.+.+.++....+                       
T Consensus         9 HERplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-----------------------   63 (327)
T KOG0643|consen    9 HERPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-----------------------   63 (327)
T ss_pred             CccccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-----------------------
Confidence            35688666  99999999999999999999999999999999998887775544433                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCC-------CC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPL-------TG  149 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----d~~v~iwd~~-------~~  149 (579)
                          ...+++|+.|.++++||+.+|+++..+.  ...+|..+.|+++|++++.+..     .+.|.++|++       ..
T Consensus        64 ----s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   64 ----SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             ----cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence                6779999999999999999999987773  5678999999999998777643     4679999988       44


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      ++..++..+...++.+-|.|-++.|++|.  |.|..||.++|+. +..-..|...|+.+.++||..++++++ .|.+-++
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl  216 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKL  216 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCcccee
Confidence            56788888889999999999999999998  9999999999854 555578999999999999999999987 7999999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCC-------------eEEEEEcCCceeecccCC
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETG-------------VCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg-------------~i~iwd~~~~~~~~~~~~  292 (579)
                      ||..+-+..     .+. .....+.+++++     |--.+++.|+ ++.             ..++|++-..+.+...++
T Consensus       217 ~D~~tl~v~-----Kty-~te~PvN~aais-----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG  285 (327)
T KOG0643|consen  217 VDVRTLEVL-----KTY-TTERPVNTAAIS-----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG  285 (327)
T ss_pred             eeccceeeE-----EEe-eecccccceecc-----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc
Confidence            999987643     222 233345556665     6555555443 322             122333333344444555


Q ss_pred             eeEEeeeccCCcccccccchhhhhccccceecC
Q 008041          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      +-..+.+.+ +.|+++    .-.+|..||.++.
T Consensus       286 HFGPINsvA-fhPdGk----sYsSGGEDG~VR~  313 (327)
T KOG0643|consen  286 HFGPINSVA-FHPDGK----SYSSGGEDGYVRL  313 (327)
T ss_pred             cccCcceeE-ECCCCc----ccccCCCCceEEE
Confidence            544444444 788888    7788888775543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.6e-24  Score=217.62  Aligned_cols=239  Identities=15%  Similarity=0.210  Sum_probs=178.5

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---------------------------------------------
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---------------------------------------------  148 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~---------------------------------------------  148 (579)
                      .+|.+.|+++.|++||+|||+||.|+.|+||.+..                                             
T Consensus       264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            38999999999999999999999999999998654                                             


Q ss_pred             ---------------CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-C
Q 008041          149 ---------------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-N  210 (579)
Q Consensus       149 ---------------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~  210 (579)
                                     .++++.|.+|.+.|..+.|+.+ .+|++++  .+|++|++...++++.|. |...|+|++|+| |
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD  421 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence                           0123455689999999999965 5777777  899999999999999997 999999999999 6


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      .+||++|+ -|+.++||++...+..      ....-...++.++|.     |||++.++|+.+|.+++|+....+.....
T Consensus       422 DryFiSGS-LD~KvRiWsI~d~~Vv------~W~Dl~~lITAvcy~-----PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  422 DRYFISGS-LDGKVRLWSISDKKVV------DWNDLRDLITAVCYS-----PDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             CCcEeecc-cccceEEeecCcCeeE------eehhhhhhheeEEec-----cCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            67899887 7999999999887532      222334678889998     99999999999999999998766543211


Q ss_pred             C-----C---eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC--CcEEEeecCC
Q 008041          291 K-----A---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQD  360 (579)
Q Consensus       291 ~-----~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~d  360 (579)
                      .     .   ....+.....+..+..    .++..+.|..|+++|+        .......+++|+.+  ..+...|+.|
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~----~vLVTSnDSrIRI~d~--------~~~~lv~KfKG~~n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPD----EVLVTSNDSRIRIYDG--------RDKDLVHKFKGFRNTSSQISASFSSD  557 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCC----eEEEecCCCceEEEec--------cchhhhhhhcccccCCcceeeeEccC
Confidence            0     0   0012222221222211    4556666665655443        11223335555333  3577789999


Q ss_pred             cceeeccccceecccceee
Q 008041          361 GVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       361 g~~l~~s~s~d~~~~~w~~  379 (579)
                      |++| +++|+|..+++|+.
T Consensus       558 gk~I-Vs~seDs~VYiW~~  575 (712)
T KOG0283|consen  558 GKHI-VSASEDSWVYIWKN  575 (712)
T ss_pred             CCEE-EEeecCceEEEEeC
Confidence            9999 99999999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6e-23  Score=174.67  Aligned_cols=246  Identities=20%  Similarity=0.282  Sum_probs=192.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccCccccccccccccccccccccccceEEeeecc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      .+.|  .|.+|||+|+++|+|+.|.+|++.-.....+     -.+|.-|.+.+..+.|..+                  .
T Consensus        89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~  148 (350)
T KOG0641|consen   89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P  148 (350)
T ss_pred             CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence            4667  6779999999999999999999975543222     2344555555555555433                  1


Q ss_pred             cccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                      ..     ++.++++++ .|.+|++-|..+|+....+ .+|++.|.++- +-+|-.|++|+.|.+|++||++-..++.++.
T Consensus       149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~  221 (350)
T KOG0641|consen  149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD  221 (350)
T ss_pred             Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence            11     144455443 4556888899999887555 78999999874 3368899999999999999999888887754


Q ss_pred             c--C-----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          157 A--S-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       157 ~--~-----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .  |     ...|.++++.|.|+++++|.  ....+||++.++.+..|..|...|.++.|+|...|+++++ .|..|++-
T Consensus       222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt  300 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT  300 (350)
T ss_pred             CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence            2  1     24799999999999999998  7899999999999999999999999999999999999987 79999999


Q ss_pred             EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      |++..-......+...+|....+.+.+.      |..-.+++.+.|.++.+|-+.
T Consensus       301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEeccC
Confidence            9987643323345556788888887766      677778899999999999653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.7e-23  Score=195.82  Aligned_cols=256  Identities=17%  Similarity=0.199  Sum_probs=195.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccc-cc-ccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LE-REHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      -+|  ++|+++||+.+.++++.||+|.=|++.+|+...-+-... .+....+.+. .. .+|.. .+.+++-.+      
T Consensus       143 ~s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r~~h~k-eil~~avS~------  212 (479)
T KOG0299|consen  143 LSV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESRKGHVK-EILTLAVSS------  212 (479)
T ss_pred             Ccc--eEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCcccccccc-eeEEEEEcC------
Confidence            356  788999999999999999999999999998652221111 1111111111 00 12222 222333333      


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         ++.+|++|..|..|.||+..+.+.+..+ .+|.+.|.+++|-.....+++++.|++|++|++.....+.++.+|.+.
T Consensus       213 ---Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  213 ---DGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             ---CCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence               2889999999999999999999988665 789999999999988888999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      |..|....-++.+.+|+  +++++|++... ....+.+|.+.+-|++|-.+. +|++|+ .||.|.+|++...+..   +
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~-HfvsGS-dnG~IaLWs~~KKkpl---f  362 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE-HFVSGS-DNGSIALWSLLKKKPL---F  362 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc-ceeecc-CCceEEEeeecccCce---e
Confidence            99999998888877776  89999999543 344678899999999998765 678887 7999999999887654   3


Q ss_pred             eeeeecCc----------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          240 VLAMEHPA----------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       240 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      +....|+.          ..++.++..     |...++++|+.+|.|++|-+.++
T Consensus       363 ~~~~AHgv~~~~~~~~~~~Witsla~i-----~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  363 TSRLAHGVIPELDPVNGNFWITSLAVI-----PGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EeeccccccCCccccccccceeeeEec-----ccCceEEecCCCCceEEEEecCC
Confidence            33333321          144445554     88999999999999999987655

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9.3e-24  Score=188.21  Aligned_cols=278  Identities=12%  Similarity=0.185  Sum_probs=215.8

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++-......+.+++.|.+.+||.+++|.|+..+.+|.+.++++.|++.                           +.+++
T Consensus       154 Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~l  206 (481)
T KOG0300|consen  154 VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLL  206 (481)
T ss_pred             ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEE
Confidence            344455568889999999999999999999999999999998888876                           77888


Q ss_pred             EEECCCeEEEEEc------cCC------------------------------e----EEEEecCCCCCCEEEEEEccCCC
Q 008041           91 LGTGGGDVLALAV------SAG------------------------------Q----LKWRLSDCHPGGVSAISFATHGS  130 (579)
Q Consensus        91 ~~~~~g~i~iwd~------~~~------------------------------~----~~~~~~~~h~~~V~~l~~~~~~~  130 (579)
                      +++.|++-+||..      ...                              .    .+.. +.+|.+.|.+..|...|+
T Consensus       207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQ  285 (481)
T ss_pred             EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcc
Confidence            8999998888872      110                              0    0111 357999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEE
Q 008041          131 CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       131 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~  207 (579)
                      .+++++.|.+-.+||+++|..+..+.+|....+.++-+|..+++++++  .+.++||.+.. ..+..|+||...|++..|
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence            999999999999999999999999999999999999999999999998  69999999854 457889999999999999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       208 s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      ..+.+ +++++ +|++|++||+++....    +.++..... +.-+..+     ..+..|+.--.+..|++||+...+.-
T Consensus       366 ~~dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS~-~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~Rla  433 (481)
T KOG0300|consen  366 NTDDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDSP-ANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLA  433 (481)
T ss_pred             ecCCc-eeecC-CCceEEEeeeccccCc----ceeeecCCc-cceeEee-----cCCceEEeccCCceEEEEecCCCccc
Confidence            98764 67776 7999999999987533    233322222 2233343     44456666666779999998544321


Q ss_pred             cccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc--ceee
Q 008041          288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLP  365 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~  365 (579)
                      + .+.             .                                     .-.+|..-|.|++|..+-  +-| 
T Consensus       434 R-lPr-------------t-------------------------------------sRqgHrRMV~c~AW~eehp~cnL-  461 (481)
T KOG0300|consen  434 R-LPR-------------T-------------------------------------SRQGHRRMVTCCAWLEEHPACNL-  461 (481)
T ss_pred             c-CCc-------------c-------------------------------------cccccceeeeeeeccccCccccc-
Confidence            1 100             0                                     112677778888888654  456 


Q ss_pred             ccccceecccceeee
Q 008041          366 MSQSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~  380 (579)
                      ++++.|..+.-|++.
T Consensus       462 ftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  462 FTCGFDRMVAGWKIN  476 (481)
T ss_pred             ccccccceeeeeEec
Confidence            899999999999883

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.9e-23  Score=193.83  Aligned_cols=280  Identities=17%  Similarity=0.158  Sum_probs=208.8

Q ss_pred             EEeCC-CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC-eEE
Q 008041           22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG-DVL   99 (579)
Q Consensus        22 sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-~i~   99 (579)
                      +++.| ..+.+||+++|....++++.....           +|..                ....+.+++++.... .+.
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~sl----------------~~l~~~yllsaq~~rp~l~   64 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AASL----------------TALNNEYLLSAQLKRPLLH   64 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCccccc-----------chhh----------------hhhchhheeeecccCcccc
Confidence            33445 459999999999998887531100           0000                000134556655544 499


Q ss_pred             EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-
Q 008041          100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-  178 (579)
Q Consensus       100 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-  178 (579)
                      +|.+......... .--.++|.+++-+|+|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+-||.+|++|+ 
T Consensus        65 vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   65 VWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             ccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence            9998876544322 12457899999999999998888999999999999999999999999999999999999999999 


Q ss_pred             -CeEEEEECC---------CCeeeEEeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       179 -~~i~vwd~~---------~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                       |.|.+|++.         +-+++..|..|.-+|+.+...+.  ..++++++ .|+++++||+..+...     .++. .
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~-f  216 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTIT-F  216 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEe-c
Confidence             999999763         34668889999999999988765  35788887 8999999999998643     3332 3


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      +..+.++..+     |.++.+++|+.+|.|.+.++.......      ..+.        .+                  
T Consensus       217 p~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~------~~v~--------~k------------------  259 (476)
T KOG0646|consen  217 PSSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQS------AGVN--------QK------------------  259 (476)
T ss_pred             CCcceeEEEc-----ccccEEEecCCcceEEeeehhcCCccc------cccc--------cc------------------
Confidence            3445667776     999999999999999998864332100      0000        00                  


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCC--CcEEEeecCCcceeeccccceecccceeeee
Q 008041          327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                             .+..-...+..+.||.+  .|+|++.+-||.+| +||++|+.+.+|++..
T Consensus       260 -------~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  260 -------GRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYS  308 (476)
T ss_pred             -------ccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecch
Confidence                   01112233456778888  89999999999999 9999999999999964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=2e-22  Score=190.41  Aligned_cols=345  Identities=12%  Similarity=0.091  Sum_probs=242.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc---ccccceEEeeeccccccc---
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL---SVDYTCMKWLSVDRKKKR---   82 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~---   82 (579)
                      +|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.+++...+   |.+   ..+...+.|...-.+...   
T Consensus       250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki~~Wd~~y~k~r~~el  325 (626)
T KOG2106|consen  250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKIILWDDNYRKLRETEL  325 (626)
T ss_pred             EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceEEeccccccccccccC
Confidence            8889999996 568999999999999888877777788888887766544   221   234455667632211100   


Q ss_pred             ----------ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041           83 ----------KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        83 ----------~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  152 (579)
                                ..+..-|++|+..+.|.-=++..+-.+  ...+|....+.++.+|+.+.+++++.|+.+++|+  ..+.+
T Consensus       326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~--~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~  401 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL--TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE  401 (626)
T ss_pred             chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE--EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence                      001222778888777777777666543  2257999999999999999999999999999999  55555


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      .+.. -..++.|+.|+|.| .++.|.  |...+.|.++...+..-. ...+++.++|+|+|.+|+.++ .|+.|++|-+.
T Consensus       402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs  477 (626)
T KOG2106|consen  402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVS  477 (626)
T ss_pred             EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEec-CCCeEEEEEEC
Confidence            5543 35688999999999 888887  999999999865554434 489999999999999999987 79999999998


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeecc----CC-cc
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED----VN-SK  305 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~-~~  305 (579)
                      .....   ....-.++...+..+.|+     +|++++.+.+.|-.|..|.....+++...+..+.......    .+ ..
T Consensus       478 ~~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s  549 (626)
T KOG2106|consen  478 ANGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGS  549 (626)
T ss_pred             CCCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEeccc
Confidence            76533   222223444778888888     9999999999999999996554454444333222111000    00 11


Q ss_pred             ccc--------ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041          306 SQK--------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       306 ~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                      ++.        .....+++|...|.++++...     .......+..+.+|...+.+++|+.+-..+ ++.+.|.++..|
T Consensus       550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP-----c~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~qW  623 (626)
T KOG2106|consen  550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYP-----CSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQW  623 (626)
T ss_pred             CCchHHHhhhhhhhhhhhccccCceEEEEccc-----cCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEEE
Confidence            111        011244444444444433221     133445677888999999999999888777 555599999999


Q ss_pred             ee
Q 008041          378 YV  379 (579)
Q Consensus       378 ~~  379 (579)
                      .+
T Consensus       624 ~l  625 (626)
T KOG2106|consen  624 RL  625 (626)
T ss_pred             Ee
Confidence            76

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=6.1e-24  Score=196.03  Aligned_cols=233  Identities=16%  Similarity=0.217  Sum_probs=196.6

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ++|+++  .|.+++.++++.+.|+.+++|++.+.+...++.+|...+...-|...                         
T Consensus       220 g~it~~--d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~-------------------------  272 (459)
T KOG0288|consen  220 GNITSI--DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS-------------------------  272 (459)
T ss_pred             CCccee--eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-------------------------
Confidence            568444  99999999999999999999999999999999999888776666543                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        ...+++|+.|.+|++||+....+...++.+  +.+.++..+  ...+++|..|+.|++||.++..+......+. .|+
T Consensus       273 --~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vt  345 (459)
T KOG0288|consen  273 --HSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVT  345 (459)
T ss_pred             --ccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-cee
Confidence              344899999999999999999888777543  456677665  5568899999999999999999999988765 999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ++..+++|..+.+++  .++.+.|+++.+....+...    ....+.+.|||++.|+++|+ .||.|+||++.+++..  
T Consensus       346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE--  422 (459)
T KOG0288|consen  346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE--  422 (459)
T ss_pred             eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE--
Confidence            999999999999998  89999999999887777432    24478899999999999988 6999999999999855  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  279 (579)
                       .+....+....+.++.|+     |.|..+++++.++.+.+|
T Consensus       423 -~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  423 -KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence             344444555467888888     999999999999999998

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=2.7e-23  Score=196.68  Aligned_cols=280  Identities=13%  Similarity=0.159  Sum_probs=202.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-------  154 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------  154 (579)
                      +..+++|+.|.+|++||++.-..    ...+....+..|.++.|++.|..|++.+.....+++|- .|..+..       
T Consensus       179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQY  257 (641)
T KOG0772|consen  179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQY  257 (641)
T ss_pred             CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchh
Confidence            78899999999999999985432    33444455667999999999999999999999999994 4543332       


Q ss_pred             ------eecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee-eEEee-----cCCCCEEEEEEecCCCEEEEEec
Q 008041          155 ------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       155 ------~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~-~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                            -++|...++|.+|+|+.+ .+++++  |++++||+...+. +..+.     +..-+++.++|+|||+.+++++ 
T Consensus       258 I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-  336 (641)
T KOG0772|consen  258 IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-  336 (641)
T ss_pred             hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-
Confidence                  246888999999999764 566666  9999999986543 23332     3345789999999999988887 


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee-cccCCee-EEe
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL-RNTKATK-ILS  297 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~-~~~  297 (579)
                      .||.|.+|+..........++.........++++.|+     +||++|++-+.|+++++||++..+.- ....+.- .--
T Consensus       337 ~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             cCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            7999999998766544333333333444588999998     99999999999999999999877542 2111111 111


Q ss_pred             eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                      .....|+|+.+    .|++|..--.-.. .| .+..+....+....++......|..+.|+|.=+.| +.|+.||+++++
T Consensus       412 ~tdc~FSPd~k----li~TGtS~~~~~~-~g-~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi-~~gsgdG~~~vy  484 (641)
T KOG0772|consen  412 GTDCCFSPDDK----LILTGTSAPNGMT-AG-TLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI-FAGSGDGTAHVY  484 (641)
T ss_pred             CCccccCCCce----EEEecccccCCCC-Cc-eEEEEeccceeeEEEecCCCceEEEEeecchhhhe-eeecCCCceEEE
Confidence            22334889888    8888876421111 23 33444455566666777777889999999998888 677779998887


Q ss_pred             ee
Q 008041          378 YV  379 (579)
Q Consensus       378 ~~  379 (579)
                      --
T Consensus       485 Yd  486 (641)
T KOG0772|consen  485 YD  486 (641)
T ss_pred             EC
Confidence            43

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.4e-22  Score=180.02  Aligned_cols=242  Identities=14%  Similarity=0.170  Sum_probs=173.2

Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEE-EeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041            9 ILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQT-EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         9 l~~~fsp-dg~~lasg~~dg~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      -+++||| ...+++.||.||+||+|+++. |...- ....|.                  .++-+++|...         
T Consensus        31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~------------------~PvL~v~Wsdd---------   83 (347)
T KOG0647|consen   31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD------------------GPVLDVCWSDD---------   83 (347)
T ss_pred             heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC------------------CCeEEEEEccC---------
Confidence            3449999 556777899999999999986 34332 112222                  34556666654         


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      ++.+++|+.|+.+++||+.+++.. .+ ..|.++|.++.|-+...  .|++||.|++|+.||++...++.++.- ...++
T Consensus        84 gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvY  160 (347)
T KOG0647|consen   84 GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVY  160 (347)
T ss_pred             CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceee
Confidence            677999999999999999999764 33 57999999999987665  699999999999999999988888763 45677


Q ss_pred             EEEEccCCCEEEEECCeEEEEECCCCeeeEE-e-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc---cce
Q 008041          164 CMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-F-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---SAS  238 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~-~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~---~~~  238 (579)
                      ++..-..--.++++.+.|.+|+++++..... . ..-.-.+++++..+|....+.|+ -+|.+.+..+..+...   ..+
T Consensus       161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCceeEE
Confidence            7776543333334448999999987643211 1 12234588999999888778887 6999999988875321   122


Q ss_pred             eeeeee---cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          239 CVLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       239 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      |.....   ..-+.+..++|.     |....|++++.||+..+||-+....
T Consensus       240 CHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~k  285 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTK  285 (347)
T ss_pred             EeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhh
Confidence            322211   113345556665     9889999999999999999654433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=181.33  Aligned_cols=248  Identities=15%  Similarity=0.169  Sum_probs=179.4

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..||.||+.|.+||+|..||.|.|||..+...-+.+.+|-.                  ++++++|.+.         +.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~------------------pi~sl~WS~d---------gr   78 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR------------------PITSLCWSRD---------GR   78 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc------------------ceeEEEecCC---------CC
Confidence            57889999999999999999999999999887666665544                  4556666554         77


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCC----Ce
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK----GI  162 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----~v  162 (579)
                      .|++++.|..|.+||+..|.+..++.  ..++|+.+.|+|..+. ++.+-.+..-.+-++..+.....-....+    ..
T Consensus        79 ~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   79 KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA  156 (405)
T ss_pred             EeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence            89999999999999999999887773  6789999999995443 44443444455556544322111111111    23


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc----
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ----  235 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~----  235 (579)
                      .+..|++.|+++++|.  |.+.+||..+.+++..+.-.. ..|.++.|+..|++|+.-+ .|+.|+.|+++.-...    
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccC
Confidence            3446899999999998  999999999999998887655 7899999999999999987 6999999998732111    


Q ss_pred             cceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeeccc
Q 008041          236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~  290 (579)
                      .......+.  -........+|+     .+|.|+++++. -..++||.-..|..++.+
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceeeee
Confidence            000111111  112233455565     89999999886 447999987777766544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.1e-21  Score=176.02  Aligned_cols=268  Identities=11%  Similarity=0.092  Sum_probs=204.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +.++++++.|..+++||..+++.+..+ ..+.-.|..++|......++.++.  |.+|+..++.+.+.++.|.+|...|+
T Consensus        26 G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~  104 (311)
T KOG1446|consen   26 GLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN  104 (311)
T ss_pred             CCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence            788999999999999999999998777 345567888899777777777765  88999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++.+|-+..+++++  ++|++||++..++..-+.-...  ..++|.|.|-+++++. ....|++||++.-...+. ..+
T Consensus       105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~-~~~~IkLyD~Rs~dkgPF-~tf  180 (311)
T KOG1446|consen  105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALAN-GSELIKLYDLRSFDKGPF-TTF  180 (311)
T ss_pred             EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEec-CCCeEEEEEecccCCCCc-eeE
Confidence            999999999999999  8999999998777655543333  3478999999888876 455999999998754422 222


Q ss_pred             eee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe--eEEeeeccCCcccccccchhhhhcc
Q 008041          242 AME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT--KILSSSEDVNSKSQKSATAAIFAAK  318 (579)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~  318 (579)
                      .+. .....+..+.|+     |||++|+.++..+.+++.|.-+|..+.+....  .........|+|+++    +|+.|+
T Consensus       181 ~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~----Fvl~gs  251 (311)
T KOG1446|consen  181 SITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK----FVLSGS  251 (311)
T ss_pred             ccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc----EEEEec
Confidence            332 334455667776     99999999999999999999999866544322  222223445789998    999999


Q ss_pred             ccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceeccccee
Q 008041          319 LQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      .||.+..|+        ......+..+.+ +..++.++.|.|.-..+ +|++  ..+.+|-
T Consensus       252 ~dg~i~vw~--------~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf-~sa~--s~l~fw~  301 (311)
T KOG1446|consen  252 DDGTIHVWN--------LETGKKVAVLRGPNGGPVSCVRFNPRYAMF-VSAS--SNLVFWL  301 (311)
T ss_pred             CCCcEEEEE--------cCCCcEeeEecCCCCCCccccccCCceeee-eecC--ceEEEEe
Confidence            877544422        233334445555 67889999999988877 5554  5666773

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=1.4e-22  Score=189.84  Aligned_cols=256  Identities=15%  Similarity=0.239  Sum_probs=186.4

Q ss_pred             CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccc-cccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.|+.+  .+-|.. ..+|+++..+.|.|||...-.-.....+        .+.|++ ..||... ...+.|.+..   
T Consensus       124 ~gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~e-g~glsWn~~~---  189 (422)
T KOG0264|consen  124 DGEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEKE-GYGLSWNRQQ---  189 (422)
T ss_pred             Cccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeeccc-cccccccccc---
Confidence            3556555  777765 4677788899999999864332221110        111221 2355442 4457887765   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC--CCce
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSL  151 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~--~~~~  151 (579)
                           ...+++++.++.|.+||+.....      ....+.+|.+.|..++|++ +...|.+++.|+.+.+||++  +.++
T Consensus       190 -----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  190 -----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             -----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence                 67799999999999999985432      2345588999999999999 44568999999999999999  5566


Q ss_pred             eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          152 LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       152 ~~~~~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .....+|.+.|.|++|+| ++.+||+|+  ++|.+||+++- +++.++.+|...|.++.|+|....++++++.|+.+.||
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW  344 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence            667889999999999999 556777777  89999999974 56889999999999999999876544444489999999


Q ss_pred             EcCCCccc---------cceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcC
Q 008041          228 RTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQ  282 (579)
Q Consensus       228 d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~  282 (579)
                      |+..-...         +...++....+...+.-..|+     |+.. .|++++.|+.++||...
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence            99754322         123345544444445545555     6655 56777899999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.2e-23  Score=205.35  Aligned_cols=236  Identities=14%  Similarity=0.245  Sum_probs=180.2

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +..++-..++.++.. .++||......    +...+.+               +......+..+.|....        .+
T Consensus        46 s~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~---------------kqn~~~S~~DVkW~~~~--------~N  101 (839)
T KOG0269|consen   46 SVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT---------------KQNKFYSAADVKWGQLY--------SN  101 (839)
T ss_pred             eecCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc---------------ccceeeehhhcccccch--------hh
Confidence            667777777777753 67777665332    1111111               01122344567777544        78


Q ss_pred             EEEEEECCCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           88 LLVLGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +|++++.+|.|.+||+..   ++.+ ..+..|.-.|+++.|++- ..+|++||.||+|++||++..+...++.+....|.
T Consensus       102 lIAT~s~nG~i~vWdlnk~~rnk~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  102 LIATCSTNGVISVWDLNKSIRNKLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             hheeecCCCcEEEEecCccccchhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence            999999999999999987   3443 344789999999999984 45689999999999999999999999998888999


Q ss_pred             EEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          164 CMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       164 ~l~~~p-~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+.|+| .+..|+++.  |.+++||++.. ++..++..|.++|.++.|+|++.+|++|| .|+.|+||+..+.....   
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~---  256 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP---  256 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc---
Confidence            999999 567788887  99999999975 55778899999999999999999999998 79999999999876542   


Q ss_pred             eeeeecCceeEEeEEecCCcccCCC-cEEEEEEc--CCeEEEEEcC
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ  282 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~--dg~i~iwd~~  282 (579)
                      ..++ +....+..+.|-     |.. .+|++++.  |-.|+|||+.
T Consensus       257 ~~tI-nTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  257 KHTI-NTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             eeEE-eecceeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence            2232 334456667776     554 45666654  7799999974

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=2.2e-22  Score=186.84  Aligned_cols=237  Identities=17%  Similarity=0.196  Sum_probs=197.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+.|+|+...+++++.|..|+||......+......|..++.....++.                           +.+
T Consensus       265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t---------------------------geY  317 (506)
T KOG0289|consen  265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT---------------------------GEY  317 (506)
T ss_pred             EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC---------------------------CcE
Confidence            55699999999999999999999999887777777777777776655555                           899


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      ++.++.+|...+.|++++..+...... ..-.+++.+|||||..|.+|..|+.|++||+.++..+..|.+|.++|..++|
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence            999999999999999999987555332 2245899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +.+|-+++++.  +.|++||++..+...++.-.. .++.++.|.+.|++|+++| .|=+|++++-.+..   +.++..+.
T Consensus       398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~~~~~~~  473 (506)
T KOG0289|consen  398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WTEIKELA  473 (506)
T ss_pred             ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ceeeehhh
Confidence            99999999998  789999999988888775332 4799999999999999986 56555555543332   33555555


Q ss_pred             cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .+.....++.|.     .+.+++++++.|..++++.+
T Consensus       474 ~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  474 DHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hcccccceeeec-----ccceEEeeccchhheEEeec
Confidence            555667788887     78899999999999888753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.3e-22  Score=198.76  Aligned_cols=269  Identities=19%  Similarity=0.266  Sum_probs=201.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++.||.+  ++.+ +..++++|.||++++|+-..++.+.  .+.++.+-+..                 .+++...    
T Consensus        14 ~~DVr~v--~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~-----------------~i~y~e~----   69 (745)
T KOG0301|consen   14 KSDVRAV--AVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIAN-----------------SICYAES----   69 (745)
T ss_pred             ccchhee--EecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeec-----------------cceeccc----
Confidence            4556555  5554 4488999999999999986665432  33333322221                 1222221    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          +...+++|+.|+.|.+|.....+....+ .+|...|.++....++. +++||.|.++++|-.  +++...+.+|..
T Consensus        70 ----~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   70 ----DKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             ----cCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcch
Confidence                1566999999999999999999887555 78999999999877776 999999999999985  777788999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|.++..-|++ .+++|+  .+|++|.-  ++.+++|.+|..-|+.+++-+++. |++++ +||.|+.|++...      
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge------  210 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE------  210 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc------
Confidence            99999999998 667776  89999975  788999999999999999998864 56777 8999999999554      


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcc
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK  318 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  318 (579)
                      ++.....+...+-++...     +++..++++++|++++||+.....+.-.++......++.  ...      .-|++|+
T Consensus       211 ~l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~--L~N------gDIvvg~  277 (745)
T KOG0301|consen  211 VLLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV--LLN------GDIVVGG  277 (745)
T ss_pred             eeeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE--eeC------CCEEEec
Confidence            445555555555555544     788999999999999999988655555554433222211  111      2688889


Q ss_pred             ccceecCCc
Q 008041          319 LQDIVKPAS  327 (579)
Q Consensus       319 ~~~~~~~~~  327 (579)
                      +||.+|.+.
T Consensus       278 SDG~VrVfT  286 (745)
T KOG0301|consen  278 SDGRVRVFT  286 (745)
T ss_pred             cCceEEEEE
Confidence            988877654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.3e-22  Score=177.83  Aligned_cols=223  Identities=14%  Similarity=0.171  Sum_probs=178.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +.++++|+.|-+|+|||+++......+. .|.+.|+++.|.++-.  .|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence            6789999999999999999988876664 5999999999998765  799999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      .++++|.|++.++.+  +.++.||+-+|+.-..+. -...-+.+.|+|.|.+++.++  .+.|-+|.+......     .
T Consensus       132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~  203 (362)
T KOG0294|consen  132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R  203 (362)
T ss_pred             eeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence            999999999988876  899999999987654443 122234499999999888876  456999999887532     2


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      .+..+ ..+.++.|      -++..|++|..|+.|.+||.++...+.                                 
T Consensus       204 ~i~~~-~r~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~---------------------------------  243 (362)
T KOG0294|consen  204 EIENP-KRILCATF------LDGSELLVGGDNEWISLKDTDSDTPLT---------------------------------  243 (362)
T ss_pred             hhhcc-ccceeeee------cCCceEEEecCCceEEEeccCCCccce---------------------------------
Confidence            22222 33455556      478999999999999999965532211                                 


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe--ecCCcceeeccccceecccceeee
Q 008041          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~--~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                            .+.+|...|-.+.  -.|++.+| +|.|.||.|++|++.
T Consensus       244 ----------------------~~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  244 ----------------------EFLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID  281 (362)
T ss_pred             ----------------------eeecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence                                  2346777776665  34678899 999999999999985

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=8.2e-22  Score=171.59  Aligned_cols=234  Identities=15%  Similarity=0.252  Sum_probs=191.9

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.|..+  +|+| +...|++++.|.+|++||.+++++........                   ..-.+.|.|.      
T Consensus        65 ~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-------------------eni~i~wsp~------  117 (313)
T KOG1407|consen   65 DSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-------------------ENINITWSPD------  117 (313)
T ss_pred             cchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------------cceEEEEcCC------
Confidence            456455  7777 45799999999999999999999988765322                   1224556654      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.+++++..+..|...|.++.+.....  .....+..+.|+-++.+|+.....|+|.|.....-+++..+++|....
T Consensus       118 ---g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC  192 (313)
T KOG1407|consen  118 ---GEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC  192 (313)
T ss_pred             ---CCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence               788999999999999999998876544  345678899999888888877788999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .||.|+|+|+++|+|+  -.+.+||++.--+++.+..+.-+|+.+.|+.||++|++++ +|..|-|=+++++...     
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~-----  266 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRV-----  266 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeE-----
Confidence            9999999999999999  7899999999999999999999999999999999999987 8999999999998743     


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcC---------CeEEEEEc
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---------GVCYIWYG  281 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~  281 (579)
                      ..+++.....+ ++|.     |...+||-++.|         |++++|-+
T Consensus       267 ~eI~~~~~t~t-VAWH-----Pk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  267 WEIPCEGPTFT-VAWH-----PKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             EEeeccCCcee-EEec-----CCCceeeEEecCCCCccccccceeEEecC
Confidence            45555554444 4554     888888777653         46666644

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=1.4e-21  Score=172.87  Aligned_cols=217  Identities=12%  Similarity=0.221  Sum_probs=164.8

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.+.|+.+  ...+ .|+|+++|+.||.|.|||+++...... .+.-....+. ...+-..+| ...++...|.|.+   
T Consensus        42 HgGsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~k~~c~-v~~~h~~~H-ky~iss~~WyP~D---  113 (397)
T KOG4283|consen   42 HGGSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIAKHKCI-VAKQHENGH-KYAISSAIWYPID---  113 (397)
T ss_pred             CCCcccee--eeccccceEEeecCCCccEEEEEeccccchhh-ccceeheeee-ccccCCccc-eeeeeeeEEeeec---
Confidence            34677777  6666 589999999999999999986541100 0000000000 111112244 4678889999987   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                           ..++.+++-|..+++||..+-+....+.  ..+.|.+-+++|-.   -.+++|..|-.|++.|+.+|..-.++.+
T Consensus       114 -----tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  114 -----TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             -----CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence                 7889999999999999999988766663  45778988998833   3578888899999999999999999999


Q ss_pred             CCCCeeEEEEccCCCEEEE-EC--CeEEEEECCCC-eeeEE--------------eecCCCCEEEEEEecCCCEEEEEec
Q 008041          158 STKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDH-KKMQK--------------FSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~-~~--~~i~vwd~~~~-~~~~~--------------~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      |.+.|.++.|+|...+++. |+  |.|++||++.. .+...              -..|.+.|..++|+.++.++++++ 
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-  265 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-  265 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-
Confidence            9999999999998887654 44  99999999753 22222              245778899999999999999998 


Q ss_pred             CCCeEEEEEcCCCcc
Q 008041          220 GERYIALWRTDGVKK  234 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~  234 (579)
                      .|..+++|+..++..
T Consensus       266 td~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  266 TDDRIRVWNMESGRN  280 (397)
T ss_pred             CccceEEeecccCcc
Confidence            688999999988763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.3e-22  Score=174.87  Aligned_cols=235  Identities=15%  Similarity=0.209  Sum_probs=181.6

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           13 FSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        13 fspdg~~lasg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+--|+.||||+.|++|+||.++++   +++.++.+|.+++..+.|..+   .                      -+.+|
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP---k----------------------~G~iL   73 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP---K----------------------FGTIL   73 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc---c----------------------cCcEe
Confidence            3445899999999999999998754   467889999998888887765   0                      18899


Q ss_pred             EEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCCee
Q 008041           90 VLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGIS  163 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~  163 (579)
                      ++++.||.|.||.-..++-... ....|...|++++|.|.+  -.|++++.||.|.+.+.+..   ...+...+|.-.|+
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN  153 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence            9999999999999988854221 125699999999999954  45899999999999987644   23344678999999


Q ss_pred             EEEEccC---C-----------CEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCC----CEEEEEecCC
Q 008041          164 CMAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KYVLSSAVGE  221 (579)
Q Consensus       164 ~l~~~p~---g-----------~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~----~~l~s~~~~d  221 (579)
                      +++|.|.   |           +.|++|+  +.|+||+..+++  .-+++.+|...|+.++|.|.-    .++++++ .|
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-qD  232 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-QD  232 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-CC
Confidence            9999996   5           5688888  899999998763  345589999999999999964    4788877 89


Q ss_pred             CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      |++.||..+..... ..... +..-...+-.+.|+     ..|..|++++.|+.+.+|.
T Consensus       233 g~viIwt~~~e~e~-wk~tl-l~~f~~~~w~vSWS-----~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  233 GTVIIWTKDEEYEP-WKKTL-LEEFPDVVWRVSWS-----LSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             CcEEEEEecCccCc-ccccc-cccCCcceEEEEEe-----ccccEEEEecCCcEEEEEE
Confidence            99999988743221 11111 11123333445566     8999999999999999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2e-22  Score=188.63  Aligned_cols=228  Identities=16%  Similarity=0.214  Sum_probs=186.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.|  ++++.||||+|||+|+.|..|.||+.++.+.++.|++|...+.++.|...                         
T Consensus       203 kei--l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-------------------------  255 (479)
T KOG0299|consen  203 KEI--LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-------------------------  255 (479)
T ss_pred             cee--EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-------------------------
Confidence            456  88899999999999999999999999999999999999999998888765                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        ...+++++.|..|++|++.....+..+ .+|.+.|.++....-++.+-+|+.|+++++|++. .+....|.++.+.+-
T Consensus       256 --t~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sid  331 (479)
T KOG0299|consen  256 --TSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSID  331 (479)
T ss_pred             --ccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCee
Confidence              667899999999999999988777555 6899999999988878777777799999999994 334446888888999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cC-----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h-----------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      |++|-.+ ..+++|+  |.|.+|++...+++.+.. .|           +..|++++..|....+++++ ++|.|++|.+
T Consensus       332 cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i  409 (479)
T KOG0299|consen  332 CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKI  409 (479)
T ss_pred             eEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEe
Confidence            9999854 5777887  999999999988877652 22           22789999999998888876 8999999999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      ..+-.. ...++.+. -..++..++|+     ++|++|++|.
T Consensus       410 ~~g~r~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagi  444 (479)
T KOG0299|consen  410 EDGLRA-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGI  444 (479)
T ss_pred             cCCccc-cceeeecc-cccEEEEEEEc-----cCCCEEEEec
Confidence            887321 12344444 45566777777     8999777773

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.7e-22  Score=201.69  Aligned_cols=235  Identities=14%  Similarity=0.227  Sum_probs=187.7

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|.|+|+++++|+.||.|++|+..+-. .-..+..+                  +   ..+.|....        .+.
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~------------------g---~~v~~ia~~--------s~~   68 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS------------------G---ELVSSIACY--------SNH   68 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc------------------C---ceeEEEeec--------ccc
Confidence            34999999999999999999999876542 11111100                  1   112222221        567


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++|+.+++|.+|....++.-..+ ...+-++++++|+.+|++++.||.|-.|++.++.+......+++|+++|.++.|+
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~  147 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD  147 (933)
T ss_pred             eEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence            999999999999999988753222 3356789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecC--------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      |++++||+.+  |.|++||++++.+..++.+-        ...+..++|+|+|..++..+ -|+.|++|+..+....   
T Consensus       148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~---  223 (933)
T KOG1274|consen  148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ---  223 (933)
T ss_pred             CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence            9999999988  99999999999877666432        34567789999977777776 5999999999988754   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      ..+...+....+.++.|+     |.|+|||+++.||.|.|||.++
T Consensus       224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence            333444555557888888     9999999999999999999986

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=194.73  Aligned_cols=328  Identities=15%  Similarity=0.196  Sum_probs=225.8

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           15 PALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        15 pdg~~lasg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      |=|.+++++..++.+.||+..+++..    ..+......                 .++.+.- | +..      -+.++
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~-----------------~Ital~H-P-~TY------LNKIv  176 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGD-----------------FITALLH-P-STY------LNKIV  176 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeeccCC-----------------ceeeEec-c-hhh------eeeEE
Confidence            34778888888999999998775111    011100000                 0111111 1 000      34589


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +|+..|.+.+||+++++.+.++ +++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.+|+...++|++++|.-|
T Consensus       177 vGs~~G~lql~Nvrt~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD  255 (910)
T KOG1539|consen  177 VGSSQGRLQLWNVRTGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD  255 (910)
T ss_pred             EeecCCcEEEEEeccCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence            9999999999999999999888 678899999999998888999999999999999999999999966799999999999


Q ss_pred             CCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-----------
Q 008041          171 GKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-----------  235 (579)
Q Consensus       171 g~~l~~~~---~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-----------  235 (579)
                      |+.+.+.+   |.+.+||++..+.+.... .|.+.|....|.|....+++++ .|+.+++|=.+++...           
T Consensus       256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs  334 (910)
T KOG1539|consen  256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHS  334 (910)
T ss_pred             CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCC
Confidence            98665554   899999999988876665 8989999999999988888887 6998888855421100           


Q ss_pred             -cceee----------------------------------------------------------ee--------------
Q 008041          236 -SASCV----------------------------------------------------------LA--------------  242 (579)
Q Consensus       236 -~~~~~----------------------------------------------------------~~--------------  242 (579)
                       +..|+                                                          ..              
T Consensus       335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv  414 (910)
T KOG1539|consen  335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV  414 (910)
T ss_pred             CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence             00000                                                          00              


Q ss_pred             ------------------------eec-----CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC--
Q 008041          243 ------------------------MEH-----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--  291 (579)
Q Consensus       243 ------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  291 (579)
                                              +.+     ......+++.+     +-|++.+.|...|.|.+||+++|-....+.  
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-----~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~  489 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-----FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS  489 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-----ccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence                                    000     00112223333     678899999999999999999997765542  


Q ss_pred             -CeeEEeeeccCCcccccccchhhhhccccceecCCceEEEE---------------------------------EeCCC
Q 008041          292 -ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLL  337 (579)
Q Consensus       292 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------~~g~~  337 (579)
                       .+...+....   -|+.  ...+++++.+|+...++-.-..                                 .+...
T Consensus       490 ~ah~~~V~gla---~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~  564 (910)
T KOG1539|consen  490 PAHKGEVTGLA---VDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV  564 (910)
T ss_pred             ccccCceeEEE---ecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence             1221111111   0111  1156666666655444321110                                 01111


Q ss_pred             CCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .....+.+.+|.+.++.++|||||++| ++++.|++||+||+-
T Consensus       565 t~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlp  606 (910)
T KOG1539|consen  565 TRKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLP  606 (910)
T ss_pred             hhhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEecc
Confidence            223445667899999999999999999 999999999999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=8.6e-23  Score=192.59  Aligned_cols=272  Identities=14%  Similarity=0.198  Sum_probs=208.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++..|...+++.||+ .|.|+|||+...       +...++..+-.-.      ...-+..+...+         +++.
T Consensus       423 cAvtIS~~trhVyTgG-kgcVKVWdis~p-------g~k~PvsqLdcl~------rdnyiRSckL~p---------dgrt  479 (705)
T KOG0639|consen  423 CAVTISNPTRHVYTGG-KGCVKVWDISQP-------GNKSPVSQLDCLN------RDNYIRSCKLLP---------DGRT  479 (705)
T ss_pred             EEEEecCCcceeEecC-CCeEEEeeccCC-------CCCCccccccccC------cccceeeeEecC---------CCce
Confidence            4557888899999999 578999998643       1111111111100      011112222222         2778


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      |++|+.-.++.|||+.......+. +..-.-.+.+++.+||.+..++|+.||.|.|||+.+...++.|++|.+.+.||.+
T Consensus       480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence            999999999999999876542111 1222345788999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      ++||..|.+|+  ++|+.||+++++.+.... ..+.|.++.++|++.+++.+= .++.+.+-.....++      +.+..
T Consensus       560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yqlhl  631 (705)
T KOG0639|consen  560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQLHL  631 (705)
T ss_pred             cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------eeecc
Confidence            99999999999  999999999987765432 467899999999999999874 788787777665542      35566


Q ss_pred             CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccce
Q 008041          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      ++.++-.+.|.     +-|+++++.+.|+-+..|...-|..+...+......+|+.  +.+.+    +|++|+.+..
T Consensus       632 heScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI--S~ddk----yIVTGSGdkk  697 (705)
T KOG0639|consen  632 HESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI--SFDDK----YIVTGSGDKK  697 (705)
T ss_pred             cccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeeccccCcceeeee--ccCce----EEEecCCCcc
Confidence            67777778887     8999999999999999999999988888887777777765  55666    8999998753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=9.6e-21  Score=185.40  Aligned_cols=269  Identities=17%  Similarity=0.158  Sum_probs=188.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-EEEECC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG   95 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~   95 (579)
                      ++.+++++.|+.|++||..+++....+..+.. +.                  .+.|.+.         +..+ +++..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~------------------~l~~~~d---------g~~l~~~~~~~   52 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PR------------------GITLSKD---------GKLLYVCASDS   52 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CC------------------ceEECCC---------CCEEEEEECCC
Confidence            35788999999999999999988887764322 22                  3444332         4444 566778


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l  174 (579)
                      +.|++||..+++....+. .+. .+..++|+|+++.++++ +.|+.+++||+.+++.+..+.. ...+.+++|+|+|+++
T Consensus        53 ~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLP-SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CeEEEEECCCCcEEEecc-CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence            999999999988775553 333 35778999999987654 5689999999998887777763 3356889999999999


Q ss_pred             EEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC-----
Q 008041          175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-----  246 (579)
Q Consensus       175 ~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----  246 (579)
                      +++.   ..+.+||..+++....... ...+.++.|+|+++++++++..++.|++||+.+++...   .......     
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~  205 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK---KITFEIPGVHPE  205 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee---eeeecccccccc
Confidence            9887   3578889998877665542 33457899999999887665468999999999875331   1111110     


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecC
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      ......+.++     |++++++++ +.++.+.+||.++++.....                                   
T Consensus       206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----------------------------------  245 (300)
T TIGR03866       206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL-----------------------------------  245 (300)
T ss_pred             cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence            0111234455     899986554 45778999998765432100                                   


Q ss_pred             CceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                           .+...+.+++|+|||.+|.++++.++.+++|++..
T Consensus       246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence                                 01124667889999999933446689999999853

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.1e-22  Score=191.80  Aligned_cols=230  Identities=16%  Similarity=0.256  Sum_probs=183.3

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +|...|||+.|++|+.-.++.|||+..-....  ++.........+..+++                           .+
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak  522 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK  522 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence            45899999999999999999999998655432  22221111222222222                           67


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      +.+++..||.|.|||+.....+.++ ++|++.+.|+..++||..|.+|+.|.+|+.||+++++.+.... ....|.++.+
T Consensus       523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~  600 (705)
T KOG0639|consen  523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY  600 (705)
T ss_pred             eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence            7899999999999999998888766 7999999999999999999999999999999999998776543 3568999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      +|.+.++++|.  +.+.|...... ....+.-|.+-|.++.|.+-|+++++.| .|+.+..|...-+..     ++....
T Consensus       601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGas-----iFqskE  673 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS-----IFQSKE  673 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCccccc-----eeeccc
Confidence            99999999998  67777765443 3445677999999999999999999998 799999999888763     355555


Q ss_pred             CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      ...+++|- ++     .|.++|++|+.|....+|.+
T Consensus       674 ~SsVlsCD-IS-----~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 SSSVLSCD-IS-----FDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCcceeee-ec-----cCceEEEecCCCcceEEEEE
Confidence            55555443 33     68899999999999888864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.9e-21  Score=173.53  Aligned_cols=245  Identities=18%  Similarity=0.252  Sum_probs=181.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -.+.|+|.++.|+.++.||.+++||+........++ |..++.+..|..                            ...
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d----------------------------~~~   67 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD----------------------------EST   67 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC----------------------------Cce
Confidence            445999999999999999999999998876655554 344444433332                            345


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++|+.||.|+.+|+.+++..  ....|..+|.|+.+++....+++||.|++|++||.+....+..+.. ...|.|+...
T Consensus        68 ~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~  144 (323)
T KOG1036|consen   68 IVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS  144 (323)
T ss_pred             EEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc
Confidence            899999999999999998874  3357999999999999888899999999999999987666666654 3488888876


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-----ccee
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-----SASC  239 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-----~~~~  239 (579)
                        |+.|++|.  ..+.+||+++.....+.  ..-+-.++++++-|++.-+++++ -||.|.+=.++..+..     ...|
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhceeEEe
Confidence              55666655  79999999986553322  23456789999999877667766 6999988766655211     1222


Q ss_pred             eeeeecC---ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          240 VLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       240 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      .......   ...+..+.|+     |-...+++|+.||.|.+||+.+.+.+..+.+-
T Consensus       222 Hr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             eecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            2222211   2345556665     88889999999999999999999888776544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=6.2e-22  Score=194.11  Aligned_cols=222  Identities=16%  Similarity=0.264  Sum_probs=183.3

Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +|-+ ++-.+++|+.|++|.+|...+......+.+|...+.++.....                           +. ++
T Consensus        65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~---------------------------~~-~i  116 (745)
T KOG0301|consen   65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED---------------------------GT-LI  116 (745)
T ss_pred             eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc---------------------------Cc-eE
Confidence            5554 4456899999999999999999999999988887765544333                           33 89


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +|+.|.++++|-...  +... .++|+..|+++.+-|++ .++|||.|.+|++|.  .++.+++|.+|.+-|..+++-|+
T Consensus       117 SgSWD~TakvW~~~~--l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  117 SGSWDSTAKVWRIGE--LVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             ecccccceEEecchh--hhcc-cCCcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecC
Confidence            999999999997654  3323 47999999999999988 788999999999998  48899999999999999999988


Q ss_pred             CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCcee
Q 008041          171 GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       171 g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      +.++-++. |.|++|++ +|+++.++.+|++-|.++...+++..++++| +|+++++|+...       |...+.++...
T Consensus       191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e-------~~q~I~lPtts  261 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDE-------CVQVITLPTTS  261 (745)
T ss_pred             CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCc-------eEEEEecCccc
Confidence            76555554 99999999 8889999999999999999878888899988 899999999772       56677788754


Q ss_pred             EEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      +-++.+-     ++|. |++|+.||.|+||...
T Consensus       262 iWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  262 IWSAKVL-----LNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence            4444433     4555 7889999999999765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=2.2e-22  Score=197.22  Aligned_cols=241  Identities=17%  Similarity=0.213  Sum_probs=202.3

Q ss_pred             ccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041            6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         6 V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      +|++  +.||+|++||+|..-|+|+||++.+-+....+..|...+.++.|+.+..                        .
T Consensus       462 ~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~------------------------~  515 (1080)
T KOG1408|consen  462 FRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL------------------------T  515 (1080)
T ss_pred             eEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh------------------------h
Confidence            5555  9999999999999999999999999999888999999888888876611                        1


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec-----C
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA-----S  158 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~  158 (579)
                      ..+|++++.|.-|+|||+..+-.+...+.+|.+.|+++.|..+|  ..+++++.|+.|.+--.+.......|..     .
T Consensus       516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~  595 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS  595 (1080)
T ss_pred             hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence            67799999999999999998877667778999999999999877  6699999999886543321111122222     2


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ...++.+++.|..+++++++  ..|+|||+++++..+.|+   +|.+....+...|.|.|+++++ .|+++.++|+.+++
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGE  674 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEeccch
Confidence            34789999999999999998  899999999999999996   4667788889999999999988 69999999999987


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                           |+..+..+...+..+.|.     +|-++|++.+.||+|.||.+..
T Consensus       675 -----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  675 -----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             -----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECch
Confidence                 556777888888888888     8999999999999999999764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=6.7e-21  Score=180.19  Aligned_cols=315  Identities=14%  Similarity=0.132  Sum_probs=226.1

Q ss_pred             CcccceEEEEcc--CCCEEEEEe--CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            4 SNIRDILTSFSP--ALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~l~~~fsp--dg~~lasg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ..|  -|++||+  .|.+|+...  .+..+.|||++.+......+..+..+.                  ...|.|.+  
T Consensus       155 ~GV--~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~------------------~a~FHPtd--  212 (626)
T KOG2106|consen  155 RGV--TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVF------------------LATFHPTD--  212 (626)
T ss_pred             ccc--eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEE------------------EEEeccCC--
Confidence            346  4569998  356776654  466789999998877665554444333                  34455544  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                             ..+++....|.+.+|+++++.+..+.  +++ ...-|.|++|.++|. +++|.++|.|.||+..+.+..+...
T Consensus       213 -------~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~  284 (626)
T KOG2106|consen  213 -------PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH  284 (626)
T ss_pred             -------CcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee
Confidence                   33666777899999999988765432  222 236799999999986 6799999999999998888777777


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-----------e-----------------------------EE
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-----------M-----------------------------QK  194 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-----------~-----------------------------~~  194 (579)
                      +|.+.|.+++...+|.++- |+  ..|..||-.-.+.           +                             .+
T Consensus       285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence            9999999999999998776 66  7899998321100           0                             12


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                      ..+|......++.+|+...+++++ .|+.+++|+  ..+.     .++.. ......++.|.     |.| .++.|+..|
T Consensus       364 v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~-----~wt~~-~~d~~~~~~fh-----psg-~va~Gt~~G  428 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKL-----EWTKI-IEDPAECADFH-----PSG-VVAVGTATG  428 (626)
T ss_pred             EEecccceeeEEcCCChhheeecc-CcceEEEcc--CCce-----eEEEE-ecCceeEeecc-----Ccc-eEEEeeccc
Confidence            246777788899999999999988 799999999  3221     22221 22334566776     898 999999999


Q ss_pred             eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEE
Q 008041          275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDIN  354 (579)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~  354 (579)
                      ...+.|.++...+..+.. ....+... +++++.    +++.|+.|+.+|++.    +..+...+....+..+  .+++.
T Consensus       429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~-ysp~G~----~lAvgs~d~~iyiy~----Vs~~g~~y~r~~k~~g--s~ith  496 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTD-NEQLSVVR-YSPDGA----FLAVGSHDNHIYIYR----VSANGRKYSRVGKCSG--SPITH  496 (626)
T ss_pred             eEEEEecccceeEEEEec-CCceEEEE-EcCCCC----EEEEecCCCeEEEEE----ECCCCcEEEEeeeecC--ceeEE
Confidence            999999999666554443 33333333 788988    999999998877642    1111222223333333  78999


Q ss_pred             EeecCCcceeeccccceecccce
Q 008041          355 LNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       355 ~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                      +.||+|++++ .+.|-|--+-+|
T Consensus       497 LDwS~Ds~~~-~~~S~d~eiLyW  518 (626)
T KOG2106|consen  497 LDWSSDSQFL-VSNSGDYEILYW  518 (626)
T ss_pred             eeecCCCceE-EeccCceEEEEE
Confidence            9999999999 999999999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.89  E-value=3.7e-22  Score=177.61  Aligned_cols=242  Identities=16%  Similarity=0.281  Sum_probs=190.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|+++  .|+|-...|++|+.|++|++||...-...+.++...                ...++.++.+.|.      
T Consensus       172 ~devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q----------------d~~~vrsiSfHPs------  227 (430)
T KOG0640|consen  172 VDEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ----------------DTEPVRSISFHPS------  227 (430)
T ss_pred             cCcccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh----------------ccceeeeEeecCC------
Confidence            3578666  999999999999999999999986543332222111                1223445555543      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-AST  159 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~  159 (579)
                         +.++++|+....+++||+.+-++....  ..+|++.|+++.+++.|+..++++.||.|++||--+++++.++. +|.
T Consensus       228 ---GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~  304 (430)
T KOG0640|consen  228 ---GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG  304 (430)
T ss_pred             ---CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC
Confidence               899999999999999999998875433  36799999999999999999999999999999998999999875 455


Q ss_pred             C-CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 K-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~-~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      + .|.+..|..+|+++++.+  ..+++|.+.+++.+.++.|-.     .--+...|+....|++.--...+.+.-||.++
T Consensus       305 gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt  384 (430)
T KOG0640|consen  305 GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART  384 (430)
T ss_pred             CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence            4 899999999999999998  799999999999999887541     12245678888888887654556789999998


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      ....   ....+.|.+ ..+++..+     |.+.-+++++.|-.+++|-
T Consensus       385 adr~---~l~slgHn~-a~R~i~HS-----P~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  385 ADRV---ALLSLGHNG-AVRWIVHS-----PVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhh---hhcccCCCC-CceEEEeC-----CCCCceeeecccceeeeee
Confidence            8754   345555554 45666666     8999999999999999995

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=9.2e-22  Score=189.62  Aligned_cols=290  Identities=13%  Similarity=0.167  Sum_probs=213.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++.||++  +.+|.|.+||+|+.||+|+||.+.+|+|+.+++-                   ...+.|++|.|...   
T Consensus       399 Htg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------------d~~I~~vaw~P~~~---  454 (733)
T KOG0650|consen  399 HTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------------DSEIRSVAWNPLSD---  454 (733)
T ss_pred             cCCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------------cceeEEEEecCCCC---
Confidence            45778666  8888999999999999999999999999988752                   22455666655431   


Q ss_pred             cccCCcEEEEEEC--------------------------------CCeEEEEEccCCe----EEEEecCCCCCCEEEEEE
Q 008041           82 RKLGSSLLVLGTG--------------------------------GGDVLALAVSAGQ----LKWRLSDCHPGGVSAISF  125 (579)
Q Consensus        82 ~~~~~~~l~~~~~--------------------------------~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~  125 (579)
                          ..+|+++..                                ++.+..|.-...+    .++.. -.|...|..+.|
T Consensus       455 ----~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtW  529 (733)
T KOG0650|consen  455 ----LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTW  529 (733)
T ss_pred             ----ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE-EecCCccceeee
Confidence                122222222                                2334455544211    11122 248889999999


Q ss_pred             ccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCC
Q 008041          126 ATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA  201 (579)
Q Consensus       126 ~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~  201 (579)
                      |..|.||++...   ...|.|.++...+...-|.-..+.|.++.|+|...+|++++ ..|++||+..++.++++......
T Consensus       530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw  609 (733)
T KOG0650|consen  530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW  609 (733)
T ss_pred             ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee
Confidence            999999998765   35799999987766556766778999999999999999998 99999999998888888767788


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       202 v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      |.+++.+|.|..|+.++ .|+.+..+|+.-..+.    ..++.++...++.+.|.     +.-.++++|+.||++.||..
T Consensus       610 iS~msihp~GDnli~gs-~d~k~~WfDldlsskP----yk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSKP----YKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeecCCCCeEEEec-CCCeeEEEEcccCcch----hHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence            99999999999999887 7999999999876432    34566777788888886     66788999999999999953


Q ss_pred             CCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCC----cEEEee
Q 008041          282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNC  357 (579)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~~~~  357 (579)
                      .-...+.                   +                           +....-++.+.+|...    |..+.|
T Consensus       680 ~VY~Dl~-------------------q---------------------------npliVPlK~L~gH~~~~~~gVLd~~w  713 (733)
T KOG0650|consen  680 MVYNDLL-------------------Q---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIW  713 (733)
T ss_pred             eeehhhh-------------------c---------------------------CCceEeeeeccCceeecccceEeecc
Confidence            2111110                   0                           0011112344555544    888999


Q ss_pred             cCCcceeeccccceecccce
Q 008041          358 SQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       358 s~dg~~l~~s~s~d~~~~~w  377 (579)
                      +|...+| +|++.|+++++|
T Consensus       714 HP~qpWL-fsAGAd~tirlf  732 (733)
T KOG0650|consen  714 HPRQPWL-FSAGADGTIRLF  732 (733)
T ss_pred             cCCCceE-EecCCCceEEee
Confidence            9999999 999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.3e-23  Score=204.81  Aligned_cols=231  Identities=15%  Similarity=0.254  Sum_probs=198.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|.++  ..-..++.+++|+.|..+-+|.+..-..+..+.+|..++.++.|...                        
T Consensus        28 saav~~l--k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~------------------------   81 (825)
T KOG0267|consen   28 SAAVGCL--KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS------------------------   81 (825)
T ss_pred             hhhhcee--eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc------------------------
Confidence            4455444  44556789999999999999998877777778899988888888776                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         ..+|+.|+.+|.|++||+..++.+..+ .+|...+..+.|+|-+.++++|+.|+.+++||.+...+...+.+|...+
T Consensus        82 ---E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   82 ---ERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV  157 (825)
T ss_pred             ---hhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence               778999999999999999999988655 7899999999999999999999999999999999888999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .++.|+|+|++++.++  ..+++||...|+.+.+|.+|.+.+..+.|+|..-.+..+| .|+++++||+++-+.     +
T Consensus       158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~-----I  231 (825)
T KOG0267|consen  158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEV-----I  231 (825)
T ss_pred             EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEE-----e
Confidence            9999999999999998  8999999999999999999999999999999876666666 799999999997542     2


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                      -........+.+..|+     |++..+++|.++.
T Consensus       232 ~s~~~~~~~v~~~~fn-----~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  232 SSGKPETDGVRSLAFN-----PDGKIVLSGEQIS  260 (825)
T ss_pred             eccCCccCCceeeeec-----CCceeeecCchhh
Confidence            3333344556778887     9999988887654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=8.3e-22  Score=184.67  Aligned_cols=245  Identities=12%  Similarity=0.118  Sum_probs=185.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEE---------ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc-----
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-----  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~---------~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~-----  150 (579)
                      ..++++++.++.|+|||..+......         .+.+|.+.-++++|++... ++++++.|++|++||+....     
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~  216 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV  216 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence            67888899999999999876432211         3468988888999998554 59999999999999987542     


Q ss_pred             --eeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECC--CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041          151 --LLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       151 --~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~  223 (579)
                        ....+.+|...|..++|+|- ..+|++++  +.+.|||++  +.+......+|.++|++++|+|-+.+++++++.|++
T Consensus       217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence              34568899999999999994 45666666  899999999  556667778999999999999977766665557999


Q ss_pred             EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC-CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      |.+||++....    +..++..+...+-.+.|+     |+ ...|++++.|+++.+||+..-...+.             
T Consensus       297 V~LwDlRnL~~----~lh~~e~H~dev~~V~WS-----Ph~etvLASSg~D~rl~vWDls~ig~eq~-------------  354 (422)
T KOG0264|consen  297 VALWDLRNLNK----PLHTFEGHEDEVFQVEWS-----PHNETVLASSGTDRRLNVWDLSRIGEEQS-------------  354 (422)
T ss_pred             EEEeechhccc----CceeccCCCcceEEEEeC-----CCCCceeEecccCCcEEEEeccccccccC-------------
Confidence            99999999764    356677777777778887     65 45678888899999999753322110             


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                        +...          .++     -..++.           .-.||...|..+.|.|+-.+..+|.++|+.+.+|...
T Consensus       355 --~eda----------~dg-----ppEllF-----------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  355 --PEDA----------EDG-----PPELLF-----------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             --hhhh----------ccC-----CcceeE-----------EecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence              0000          000     001111           2338999999999999999887999999999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.5e-21  Score=180.34  Aligned_cols=288  Identities=12%  Similarity=0.144  Sum_probs=214.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|+++  .|+|....|.+|+.||+++||.+...  ..++.+.-...++.+..|++.                      
T Consensus       213 ~~~I~sv--~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~----------------------  268 (514)
T KOG2055|consen  213 HGGITSV--QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN----------------------  268 (514)
T ss_pred             cCCceEE--EecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC----------------------
Confidence            4678555  99999999999999999999987532  334443333344444444443                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~-~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                          +...+++++...-.+.||+.+.+...- ...++. ..+..+..+|++++|+..+..|.|.+....+++.+..++ -
T Consensus       269 ----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-i  343 (514)
T KOG2055|consen  269 ----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-I  343 (514)
T ss_pred             ----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-e
Confidence                133788888888899999999876421 123333 357788899999999999999999999999999999888 4


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .+.|..++|+.||+.|++++  |.|++||+++..++..+... +.|  ++++.++++.||++|+ +.|.|.|||..+-..
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFA  421 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEecc-CcceEEEeccchhhc
Confidence            67899999999999887775  99999999999999888643 333  4677789999999987 799999999654321


Q ss_pred             -ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc--CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccc
Q 008041          235 -QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                       ....++.++..-...++.+.|+     +|++.|+.+|.  +..+++-.+.+.....+.++.                  
T Consensus       422 s~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~------------------  478 (514)
T KOG2055|consen  422 STNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS------------------  478 (514)
T ss_pred             cCCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCCC------------------
Confidence             1122455666666777888888     99999888876  556776655544333222100                  


Q ss_pred             hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                        ...-+.|+|++|||.|-++ +-|..++.+.+|.+
T Consensus       479 ----------------------------------n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL  511 (514)
T KOG2055|consen  479 ----------------------------------NTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKL  511 (514)
T ss_pred             ----------------------------------CCcccceEEEEecCCCceE-EeecCCCceeeEee
Confidence                                              0122368999999999999 99999999999986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.2e-22  Score=199.55  Aligned_cols=236  Identities=15%  Similarity=0.236  Sum_probs=184.1

Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fsp-dg~~lasg~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .|+. +.++||+++..|.|.+||+..   .+.+..|..|...+.                  ++.|.+..        ..
T Consensus        94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~------------------~ldfh~te--------p~  147 (839)
T KOG0269|consen   94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN------------------KLDFHSTE--------PN  147 (839)
T ss_pred             ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcccee------------------eeeeccCC--------cc
Confidence            4553 467999999999999999976   455556666655444                  55555554        67


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l  165 (579)
                      +|++|+.||.|++||++..+....+ .+....|.++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             EEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence            8999999999999999998877555 45788999999999 5667999999999999999865 5677899999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCcccccee
Q 008041          166 AVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .|+|++.+||+|+  +.|+|||..+++.  +.++. ...+|..++|-|..++.++.++  .|-.|+|||++..-..    
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----  301 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----  301 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----
Confidence            9999999999999  8999999987654  33333 4578999999998876444332  5778999999886433    


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      ...+..+...+..++|.    +.|...+.+++.||++..-.+++
T Consensus       302 ~~t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ceeeeccCccccceecc----CCCceeeEeecCccHHHHhhhhc
Confidence            34555666777778886    24567899999999886554443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=2.1e-21  Score=188.59  Aligned_cols=291  Identities=18%  Similarity=0.215  Sum_probs=200.7

Q ss_pred             cccceEEEEccCC---CEEEEEeCCCcEEEEECCCCeEE------EEeccCccccccccccccccccccccccceEEeee
Q 008041            5 NIRDILTSFSPAL---DYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         5 ~V~~l~~~fspdg---~~lasg~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      |+..+.+.|++..   ..||.+..||.|.++|.......      ..+..|..                  .+-.+.|.+
T Consensus        49 p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n------------------AifDl~wap  110 (720)
T KOG0321|consen   49 PVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN------------------AIFDLKWAP  110 (720)
T ss_pred             CCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc------------------eeEeeccCC
Confidence            3444556787743   47888999999999998754432      22222332                  344566666


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc---
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS---  150 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~---  150 (579)
                      .         ...|+++++|.++++||+.+++++.. +..||...|.+++|.|.+. .|++|+.||.|.+||++-..   
T Consensus       111 g---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~  181 (720)
T KOG0321|consen  111 G---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA  181 (720)
T ss_pred             C---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence            2         66799999999999999999988654 3468999999999999665 48999999999999986321   


Q ss_pred             ------------------------eeeEeecCCCCeeE---EEEccCCCEEEEEC---CeEEEEECCCCeeeE-------
Q 008041          151 ------------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------  193 (579)
Q Consensus       151 ------------------------~~~~~~~~~~~v~~---l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~-------  193 (579)
                                              .+...+++...|.+   +.+..|...||+++   +.|+|||++......       
T Consensus       182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~  261 (720)
T KOG0321|consen  182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS  261 (720)
T ss_pred             HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence                                    11222334445555   55666888999987   799999998764322       


Q ss_pred             -EeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE
Q 008041          194 -KFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       194 -~~~~h---~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (579)
                       .+..|   .-.+.++.....|.+|++.+ .|+.|++|++......   .+..+.+.   ....++...+.+||+.++++
T Consensus       262 ~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~s---P~~~~sg~---~~~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  262 DKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSIS---PVAEFSGK---LNSSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             cCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcC---chhhccCc---ccceeeeeeecCCCCceEec
Confidence             22333   23466777777789998887 6999999999887643   12221111   11122222333599999999


Q ss_pred             EEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC
Q 008041          270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS  349 (579)
Q Consensus       270 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~  349 (579)
                      |+.|...++|.+.+.+.-                 +       .                              .+.+|.
T Consensus       335 gSsd~~ayiw~vs~~e~~-----------------~-------~------------------------------~l~Ght  360 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPEAP-----------------P-------A------------------------------LLLGHT  360 (720)
T ss_pred             cCCCcceeeeeecCccCC-----------------h-------h------------------------------hhhCcc
Confidence            999999999987554320                 0       0                              233677


Q ss_pred             CCcEEEeecCCcceeeccccceecccceeeeece
Q 008041          350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRV  383 (579)
Q Consensus       350 ~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~  383 (579)
                      ..|.+++|.|....=.+++|+|..+++|++.+.+
T Consensus       361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            7888888887554322788999999999985443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=2.2e-22  Score=182.82  Aligned_cols=269  Identities=10%  Similarity=0.041  Sum_probs=201.2

Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      |++=+|.. ..+|+|+.||.|+|||+.+..+...|+.|.+.+..+.+..                             ..
T Consensus        71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----------------------------~~  121 (433)
T KOG0268|consen   71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----------------------------TS  121 (433)
T ss_pred             hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----------------------------cc
Confidence            34777766 6789999999999999999999999999888777655542                             34


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++++.|.+|+.|.+... ....+.  ..+.+.++.-+..+..++|||.+  |.|||.....+++.+.-....|.++.|+
T Consensus       122 ~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  122 FFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             eEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecC
Confidence            789999999999998763 333332  34567788877778889998765  8999999889999988777899999999


Q ss_pred             cCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041          169 SDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       169 p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      |-.. +|++++  +.|.+||++++.++.++. -...-+.|+|+|.+ +.++++.+|..++.||++..+..    +.....
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p----~~v~~d  270 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP----LNVHKD  270 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccc-cceeeccccccceehhhhhhccc----chhhcc
Confidence            9665 455553  899999999998887764 23445789999955 44444558999999999886533    222334


Q ss_pred             CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecC
Q 008041          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      +...+..+.|+     |.|+-+++||.|.+|+||....+..-......+.+-.....++.|.+    +|++|+.|+.+++
T Consensus       271 hvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk----yi~SGSdd~nvRl  341 (433)
T KOG0268|consen  271 HVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK----YIISGSDDGNVRL  341 (433)
T ss_pred             cceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc----EEEecCCCcceee
Confidence            44555567777     99999999999999999998877543322222222111122677777    9999999887766


Q ss_pred             Cc
Q 008041          326 AS  327 (579)
Q Consensus       326 ~~  327 (579)
                      |.
T Consensus       342 Wk  343 (433)
T KOG0268|consen  342 WK  343 (433)
T ss_pred             ee
Confidence            43

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5e-23  Score=202.48  Aligned_cols=210  Identities=15%  Similarity=0.185  Sum_probs=180.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ...++.|+.+..+.+|.+..-..+.. +.+|..+|-++.|+++...+++|+.+|+|++||+..++.++++.+|...+.++
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S-~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv  118 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPNAITS-LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV  118 (825)
T ss_pred             ceeeccCCCceeeccccccCCchhhe-eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence            56688888888899999887766544 37899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      .|+|-|.+++.|+  +.+++||.+...+...+.+|...|..+.|+|+|+++++++ +|..++|||+..++..     ..+
T Consensus       119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef  192 (825)
T KOG0267|consen  119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF  192 (825)
T ss_pred             eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence            9999999998888  8999999998889999999999999999999999999988 6999999999988743     344


Q ss_pred             ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccc
Q 008041          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (579)
                      ..+...+..+-|.     |..-.++.|+.|+++++||+++.+.+...++....+.+.. |.++++
T Consensus       193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~  251 (825)
T KOG0267|consen  193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK  251 (825)
T ss_pred             ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence            4444444445565     8888899999999999999999999888777665555544 666665

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=8.7e-21  Score=173.36  Aligned_cols=216  Identities=15%  Similarity=0.232  Sum_probs=154.7

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccc-cccccccccceEEeeecccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .|+.+....-++..+.|+-+..|.|.||++...  ++.+......+....+.+-+ ..+|. ...-.+.|.|..      
T Consensus       153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~------  223 (440)
T KOG0302|consen  153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIK------  223 (440)
T ss_pred             ccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEecccC-ccceeeeccccc------
Confidence            344442222234557777788999999998532  11122111111111111111 11443 334467888743      


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCC---ceeeEeec
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTG---SLLGKFRA  157 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~---~~~~~~~~  157 (579)
                        ...+++|...+.|++|.+.+|.-.  ..-+.+|+..|-+++|+|.. ..|++||-||+|+|||++.+   .++. .++
T Consensus       224 --~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kA  300 (440)
T KOG0302|consen  224 --TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKA  300 (440)
T ss_pred             --ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eec
Confidence              455888888999999999987643  22345799999999999954 46999999999999999988   3333 488


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---CeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCC
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~  231 (579)
                      |.+.|+.|.|+.+-.+||+|+  |+++|||+++   ++++.+|+.|..+|++|.|+|... .|+++| .|.+|.+||+..
T Consensus       301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDlsv  379 (440)
T KOG0302|consen  301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLSV  379 (440)
T ss_pred             cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEeec
Confidence            999999999999988999998  9999999985   567899999999999999999655 444444 799999999865


Q ss_pred             Cc
Q 008041          232 VK  233 (579)
Q Consensus       232 ~~  233 (579)
                      ..
T Consensus       380 E~  381 (440)
T KOG0302|consen  380 EA  381 (440)
T ss_pred             cC
Confidence            43

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.8e-21  Score=178.88  Aligned_cols=198  Identities=21%  Similarity=0.250  Sum_probs=165.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---------CCceeeEee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---------~~~~~~~~~  156 (579)
                      +.+++.|+-.|+|++|.+.+|.++..+ .+|-..|+|+.|+.||.+|++||.||.|.+|++.         +-++++.|.
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~  171 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS  171 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence            778888889999999999999998655 7899999999999999999999999999999863         236788899


Q ss_pred             cCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          157 ASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .|.-+|+.+...+.|  ..+++++  .++++||+..+..+.++. ....+.+++.+|.++.+++|+ .+|.|.+.++...
T Consensus       172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL  249 (476)
T ss_pred             cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence            999999999988753  5777877  899999999999988876 567899999999999999887 7999999887654


Q ss_pred             cccc-----------ceeeeeeecCc--eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          233 KKQS-----------ASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       233 ~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ...+           ...+..+..+.  ..++|+..+     -||..|++|+.||++.|||+.+.+.++...
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            3111           11122233333  488999998     899999999999999999999998887665

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=169.06  Aligned_cols=265  Identities=17%  Similarity=0.214  Sum_probs=181.5

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +.|||||..|.+-+.|..+++|++-..-....-   .... .....+. .+-.....+-..+|-+....  -....++++
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~---~~~~-~~~~~~~-~r~~eg~tvydy~wYs~M~s--~qP~t~l~a  127 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DGPL-NFSKHLS-YRYQEGETVYDYCWYSRMKS--DQPSTNLFA  127 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCC---CCcc-cccccee-EEeccCCEEEEEEeeecccc--CCCccceee
Confidence            489999999999999999999997422111000   0000 0000000 00111223445566542110  011277888


Q ss_pred             EEECCCeEEEEEccCCeEEEEec-CCCCC---CEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceee--Eee-----cC
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLS-DCHPG---GVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLG--KFR-----AS  158 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~-~~h~~---~V~~l~~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~--~~~-----~~  158 (579)
                      +.+.+.-|++||.-+|+....+. -.|.+   ...+++|+|||.+|++| ....|++||+ +.|+...  ...     +.
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            89999999999999998865442 12433   35689999999999876 6788999998 5554222  111     12


Q ss_pred             CCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .+-+.|++|+|... .++.|+  .++-||.-..+.++..+.+|.+.|+.+.|.++|+.|++++..|..|-.||++.....
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            45789999999554 788887  688888888888999999999999999999999999999988999999999986543


Q ss_pred             cceeeeeeecCce-eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC-ceeeccc
Q 008041          236 SASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNT  290 (579)
Q Consensus       236 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~  290 (579)
                          ++.+..+.. ...-+.|.   ..|++++|++|+.||.|++||+++ ++.....
T Consensus       287 ----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  287 ----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             ----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence                233332222 23334444   238999999999999999999987 5534333

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=3.2e-20  Score=182.06  Aligned_cols=341  Identities=13%  Similarity=0.116  Sum_probs=223.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      .++.|+|.+..|.+++.|.++.||.-.+..  -+....  -+           ..++.....-...|++.         +
T Consensus       271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR--lG-----------e~gg~a~GF~g~lw~~n---------~  328 (764)
T KOG1063|consen  271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR--LG-----------EVGGSAGGFWGGLWSPN---------S  328 (764)
T ss_pred             EEEEEccchhhheecccCcceEEEecCCccceEEEEEE--ee-----------cccccccceeeEEEcCC---------C
Confidence            345999999999999999999999766542  222111  00           00111223334556553         6


Q ss_pred             cEEEEEECCCeEEEEEccCCe-E-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------
Q 008041           87 SLLVLGTGGGDVLALAVSAGQ-L-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG---------------  149 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~-~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~---------------  149 (579)
                      +.++.-+..|..++|...... . ......||.+.|++++|+|.|.++++.|.|.+-|+|---..               
T Consensus       329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy  408 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY  408 (764)
T ss_pred             CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence            778888899999999933221 1 22334799999999999999999999999988887642200               


Q ss_pred             --------------------ceeeEee-----------------------------------------------------
Q 008041          150 --------------------SLLGKFR-----------------------------------------------------  156 (579)
Q Consensus       150 --------------------~~~~~~~-----------------------------------------------------  156 (579)
                                          +.++.|.                                                     
T Consensus       409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~  488 (764)
T KOG1063|consen  409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC  488 (764)
T ss_pred             cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence                                0111111                                                     


Q ss_pred             ----------------------------------cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEe
Q 008041          157 ----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       157 ----------------------------------~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~  195 (579)
                                                        +|...|++++.+|+|+++|++.       ..|++|+..+...+..+
T Consensus       489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L  568 (764)
T KOG1063|consen  489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL  568 (764)
T ss_pred             eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence                                              6778899999999999999987       37999999998888899


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041          196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       196 ~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  275 (579)
                      .+|.-.|+.++|||||++|++.+ .|+++.+|........... ......|..++-...|+     |++++++++|.|.+
T Consensus       569 ~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWS-----PDEKYFATASRDKK  641 (764)
T ss_pred             cccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhh-hccccccceEEEEcccC-----cccceeEEecCCce
Confidence            99999999999999999999998 7999999998655432111 11134455555555566     99999999999999


Q ss_pred             EEEEEcCCc--eeecccC--CeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCC----CceeEEEec
Q 008041          276 CYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL----KPSFQKILV  347 (579)
Q Consensus       276 i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~  347 (579)
                      |++|.....  +.+....  +....+........+.......++.|-..|.+.++.-......+...    ........+
T Consensus       642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~  721 (764)
T KOG1063|consen  642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG  721 (764)
T ss_pred             EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence            999998776  3332211  11122222221122222222244555554544332211000000000    011223345


Q ss_pred             CCCCcEEEeecCC----------cceeeccccceecccceee
Q 008041          348 NSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       348 h~~~v~~~~~s~d----------g~~l~~s~s~d~~~~~w~~  379 (579)
                      |...|..+.|+|.          ...+ ++|+.|.++|+.++
T Consensus       722 ~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv  762 (764)
T KOG1063|consen  722 PDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV  762 (764)
T ss_pred             hHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence            8888999999965          3456 88888999998876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=3e-19  Score=174.78  Aligned_cols=239  Identities=10%  Similarity=0.082  Sum_probs=171.4

Q ss_pred             EEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+|+++ ++++.++.|++||..+++....+..+..                   ...+.|.+.         +..
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~---------g~~   86 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-------------------PELFALHPN---------GKI   86 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-------------------ccEEEECCC---------CCE
Confidence            35999999976 5667789999999999887766543211                   123344432         444


Q ss_pred             EEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           89 LVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +++ +..++.|++||+.+++.+..+.  +...+.+++|+|+|+.+++++.++ .+..||..+++....... ...+.+++
T Consensus        87 l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~  163 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE  163 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence            544 4567899999999988765553  234578899999999999888765 567789988877665442 33567899


Q ss_pred             EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCC-----C--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP-----G--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       167 ~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~-----~--~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      |+|+|+.+++++   +.|++||+++++.+..+..+.     .  ....+.|+|++++++.+...++.+.+||+.+.+.. 
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-
Confidence            999999886543   899999999998877664321     1  23468899999986655435778999999876533 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeeccc
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  290 (579)
                          ....+. ..+..+.|+     |+|++|++++ .+|.|.+||..+++.+..+
T Consensus       243 ----~~~~~~-~~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       243 ----DYLLVG-QRVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ----EEEEeC-CCcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence                122222 234566777     9999998874 5899999999998876544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1e-19  Score=178.42  Aligned_cols=240  Identities=13%  Similarity=0.131  Sum_probs=186.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.|..+  +|++.| .|.+.+.+|.|.-||+.+++....+....+++.+.+.++.                         
T Consensus        70 rsIE~L--~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~-------------------------  121 (691)
T KOG2048|consen   70 RSIESL--AWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE-------------------------  121 (691)
T ss_pred             CceeeE--EEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-------------------------
Confidence            456445  888554 6667777999999999999999998877777766666554                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----c
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----A  157 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~  157 (579)
                        +..+++|+.||.++.++...++.... .+.-..+.|.++.|+|++..+++|+.||.|++||...+..+....     .
T Consensus       122 --~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l  199 (691)
T KOG2048|consen  122 --NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL  199 (691)
T ss_pred             --cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence              77899999999888888888887543 334456899999999999999999999999999999988766221     1


Q ss_pred             ---CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          158 ---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       158 ---~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                         ...-|.++.|-.++ .+++|+  |+|.+||...+..+..+..|...|.+++..+++.+++++| .|+.|..|...+.
T Consensus       200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~  277 (691)
T KOG2048|consen  200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN  277 (691)
T ss_pred             ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence               12246677777554 677777  9999999999999999999999999999999999999998 6999999988777


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      +.. ........++...+++++..     +  ..+++|+.|+.+.+-....
T Consensus       278 ~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  278 KSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence            542 22222334555555555553     3  3899999999988865443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=3.2e-20  Score=182.13  Aligned_cols=334  Identities=13%  Similarity=0.116  Sum_probs=240.2

Q ss_pred             ceEEEEccC-CC-EEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            8 DILTSFSPA-LD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         8 ~l~~~fspd-g~-~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|+++.|+ +. .+|.|+.+..|.++.-.+.  +...++.+|...+.++.|+..   ++                    
T Consensus       148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~--------------------  204 (764)
T KOG1063|consen  148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG--------------------  204 (764)
T ss_pred             hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence            356677773 44 4556677888888865433  567788899998888888765   11                    


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCe------------------------EEE------EecCCCCCCEEEEEEccCCCEEE
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY  133 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~------------------------~~~------~~~~~h~~~V~~l~~~~~~~~l~  133 (579)
                       +.-++++++.|..|+||.+.-+.                        .+.      .++.||.+-|.++.|+|.+..|+
T Consensus       205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL  283 (764)
T KOG1063|consen  205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL  283 (764)
T ss_pred             -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence             15678889999999999986433                        011      22459999999999999998999


Q ss_pred             EEeCCCcEEEEeCCCCcee-------eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---eeeEEeecCCCC
Q 008041          134 SAGADGMVCEIDPLTGSLL-------GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA  201 (579)
Q Consensus       134 s~~~d~~v~iwd~~~~~~~-------~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~---~~~~~~~~h~~~  201 (579)
                      +++.|.++.+|...+..-+       ....+........-|+|+++.+++-+  |-.++|.....   .....+.||...
T Consensus       284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~  363 (764)
T KOG1063|consen  284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG  363 (764)
T ss_pred             ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence            9999999999986544211       11223344788999999999888877  89999983332   233445799999


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--------------------c-------------------------
Q 008041          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--------------------S-------------------------  236 (579)
Q Consensus       202 v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~--------------------~-------------------------  236 (579)
                      |..++|+|.|.||++.| .|.+-+++-.-..+..                    .                         
T Consensus       364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~  442 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK  442 (764)
T ss_pred             ceeeeecCCCCEEEEec-cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence            99999999999999998 6988888654311100                    0                         


Q ss_pred             ----------------------------ceeee--------------------------------------------eee
Q 008041          237 ----------------------------ASCVL--------------------------------------------AME  244 (579)
Q Consensus       237 ----------------------------~~~~~--------------------------------------------~~~  244 (579)
                                                  ...++                                            .+-
T Consensus       443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY  522 (764)
T KOG1063|consen  443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY  522 (764)
T ss_pred             HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence                                        00000                                            001


Q ss_pred             cCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041          245 HPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      .|...+.+++.+     |+|+++|+++..     ..|++|+..+..+...+..+...+.... |+|+++    ++++++.
T Consensus       523 GHGyEv~~l~~s-----~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~-FSpdg~----~LLsvsR  592 (764)
T KOG1063|consen  523 GHGYEVYALAIS-----PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA-FSPDGR----YLLSVSR  592 (764)
T ss_pred             cCceeEEEEEec-----CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE-ECCCCc----EEEEeec
Confidence            223344455554     899999999763     3799999999888887777777776655 899999    9999999


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      |....++..    ..+......|...+.|+--|+.+.|+||+.++ +|+|.|+++++|...+
T Consensus       593 DRt~sl~~~----~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  593 DRTVSLYEV----QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPD  649 (764)
T ss_pred             CceEEeeee----ecccchhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccC
Confidence            876555432    11222222355677899889999999999998 9999999999998854

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.3e-21  Score=186.23  Aligned_cols=237  Identities=16%  Similarity=0.218  Sum_probs=191.2

Q ss_pred             ccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccc-cccccccccccccceEEeeeccccccc
Q 008041            6 IRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLY-GNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         6 V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      |+++  +...+|+-|+++|.|-+|++|+...+  -+..++..|...+.++++ .+.                        
T Consensus        76 VNDi--iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~------------------------  129 (735)
T KOG0308|consen   76 VNDI--ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN------------------------  129 (735)
T ss_pred             HhhH--HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC------------------------
Confidence            4444  55668889999999999999999877  567777777776666655 332                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeE--E--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~--~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  152 (579)
                         ..++++|+-|+.|.+||+.++..  +        ..+..++..+|++++.++.|..|++|+..+.+++||.++++.+
T Consensus       130 ---~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki  206 (735)
T KOG0308|consen  130 ---NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI  206 (735)
T ss_pred             ---ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce
Confidence               77899999999999999997722  1        1222378889999999999999999999999999999999999


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      ..+++|...|.++..++||+.+++++  |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|++
T Consensus       207 mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~  285 (735)
T KOG0308|consen  207 MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLR  285 (735)
T ss_pred             eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccC
Confidence            99999999999999999999999998  9999999999999999999999999999999999999988 79999999998


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      +....  ..++...++...+.  ..      .+..-+-+++.|+.|+-|..+
T Consensus       286 n~~~~--tlick~daPv~~l~--~~------~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  286 NPAKS--TLICKEDAPVLKLH--LH------EHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             Cchhh--eEeecCCCchhhhh--hc------cccCCceeeeccccceecCCc
Confidence            86322  23334333332221  11      222334677889999999754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.5e-19  Score=174.68  Aligned_cols=241  Identities=12%  Similarity=0.172  Sum_probs=190.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  +++|||.+.+.||.+-.||.|.||++..+-+...+                ..|+.+..+..++|.+       
T Consensus        25 Ps~I--~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e-------   79 (691)
T KOG2048|consen   25 PSEI--VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE-------   79 (691)
T ss_pred             ccce--EEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc-------
Confidence            4678  67799999999999999999999999887654432                2255567778889983       


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~~  160 (579)
                         +..|++.+.+|.|.-||+.+++..... ....+.|++++.+|.+..++.|+.||.++.++...++....  +.-.++
T Consensus        80 ---~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   80 ---GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             ---CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence               677999999999999999999988766 55778999999999999999999999888888877765443  444567


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      .|.+++|+|++..+++|+  |.|++||+.++..+....        +...-|.++.|-.++ .++++- .-|+|.+||..
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD-S~G~V~FWd~~  233 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD-SAGTVTFWDSI  233 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-CCceEEEEccc
Confidence            999999999999999998  889999999987765221        123347788888776 466664 58999999999


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .+...     .....+...+-++..+     +++.++++++.|+.|.-|...+.
T Consensus       234 ~gTLi-----qS~~~h~adVl~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  234 FGTLI-----QSHSCHDADVLALAVA-----DNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             Ccchh-----hhhhhhhcceeEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence            88754     2333344445556665     78899999999999988876655

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.2e-20  Score=172.54  Aligned_cols=252  Identities=17%  Similarity=0.187  Sum_probs=171.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE---EEeccCcccccc-ccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      |+|+|.|..|..|.|||+.--..+   ..+-...+.... .........+|. ..+-.+.|+..-        .+.|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~--------~nVLaSg  262 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT-DAVLALSWNRNF--------RNVLASG  262 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch-HHHHHHHhcccc--------ceeEEec
Confidence            689999999999999998632211   111100000000 000000011222 122344454332        6789999


Q ss_pred             ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCcee-eEeecCCCCeeEEEEccC
Q 008041           93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLL-GKFRASTKGISCMAVSSD  170 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~l~~~p~  170 (579)
                      +.|.+|++||+.++++...+ ..|.+.|.++.|+|. ..++++|+.|++|.+.|++.-... ..++ ..+.|-.++|+|.
T Consensus       263 saD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~  340 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPH  340 (463)
T ss_pred             CCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCC
Confidence            99999999999999998666 569999999999995 456999999999999999843222 2233 3568999999997


Q ss_pred             CCEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          171 GKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       171 g~~l~~~~---~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ....+.++   |+++-+|.++. +++.+++.|.++|.+|.+++.-..+++.++.|+.|++|++......   .+......
T Consensus       341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~~~~~  417 (463)
T KOG0270|consen  341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKEHSFK  417 (463)
T ss_pred             CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccccccc
Confidence            66544444   99999999975 8999999999999999999877766665668999999999876543   11111111


Q ss_pred             ceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceee
Q 008041          247 AVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      -....|..+.     |+- .+++.|+..+.+++||+.+...+
T Consensus       418 ~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  418 LGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccceeecccC-----CCcceEEEecCccceEEEeecccChhH
Confidence            1123444444     443 56777888889999998776544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.3e-20  Score=161.04  Aligned_cols=235  Identities=17%  Similarity=0.160  Sum_probs=174.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +..|++++.|+.|+|+....+..  ....+.+|.+||+.++|..  .|..|++|+.||.|.+|.-.+|+  ....+..|.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            77899999999999999987542  2233489999999999976  88999999999999999977663  344577899


Q ss_pred             CCeeEEEEccCC--CEEEEEC--CeEEEEECCCC-e--eeEEeecCCCCEEEEEEecC---C-----------CEEEEEe
Q 008041          160 KGISCMAVSSDG--KMLATAA--GQLKTFNCSDH-K--KMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA  218 (579)
Q Consensus       160 ~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~-~--~~~~~~~h~~~v~~l~~s~~---~-----------~~l~s~~  218 (579)
                      ..|++++|.|.+  -.|++++  |.|.|.+.++. .  .-+....|.-.|+++.|.|.   |           +.|+++|
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            999999999964  5677766  99999887754 1  23345789999999999986   4           5689988


Q ss_pred             cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee
Q 008041          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (579)
                       .|+.|+||+...+.-.   .-.++..+...++-+++.+..- --..+|+++++||++.||-.. .+ ..          
T Consensus       183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~-~e-~e----------  245 (299)
T KOG1332|consen  183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKD-EE-YE----------  245 (299)
T ss_pred             -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEec-Cc-cC----------
Confidence             6999999999987422   2234667777777777772210 013679999999999999643 10 00          


Q ss_pred             eccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                             ..+                              ...   +......+..+.||+.|.+|+++++ |+.+++|.
T Consensus       246 -------~wk------------------------------~tl---l~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwk  284 (299)
T KOG1332|consen  246 -------PWK------------------------------KTL---LEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWK  284 (299)
T ss_pred             -------ccc------------------------------ccc---cccCCcceEEEEEeccccEEEEecC-CcEEEEEE
Confidence                   000                              000   0012336899999999999966665 89999995

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.1e-21  Score=169.95  Aligned_cols=256  Identities=14%  Similarity=0.136  Sum_probs=183.3

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041          120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       120 V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~  197 (579)
                      ..|+.|++.|.++++|+.||.|.+||+.+...-+.+.+|..+|++++||+||+.|++++  ..|.+||+..|.++..+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            78999999999999999999999999999998889999999999999999999999999  899999999999888876 


Q ss_pred             CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC---ceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       198 h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                      ..++|....|+|..+..+.++-.+..-.+-++..++..    .......   +..-++..|.     +.|+++++|+..|
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~fd-----r~g~yIitGtsKG  175 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVFD-----RRGKYIITGTSKG  175 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccccccccccccc-----CCCCEEEEecCcc
Confidence            78899999999965433333334555556665553321    1111111   1122223454     8999999999999


Q ss_pred             eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC----ceeEEEecCCC
Q 008041          275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKILVNSG  350 (579)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~h~~  350 (579)
                      .+.++|..+.+.+..++...........++..+.    .++.-+.|..++.++..-+...|..-.    ..++.+ ..+-
T Consensus       176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~  250 (405)
T KOG1273|consen  176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKL  250 (405)
T ss_pred             eEEEEecchheeeeeeeechheeeeEEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhh
Confidence            9999999999888766654411111112344444    777777888888877663433332211    111111 1333


Q ss_pred             CcEEEeecCCcceeeccccceecccceee--eeceeeeccCC
Q 008041          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV--QNRVTALDRAN  390 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~--~~~~~~~~~~~  390 (579)
                      ...+++||.||.|+.++.+.-..+++|+-  ++.++.+.+..
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence            56788999999999777777899999985  33366665544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=9.9e-20  Score=161.95  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=177.9

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd  145 (579)
                      .+++++|.|..        ..+++.++.||+|++|+++. |..+.+....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus        29 sIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   29 SISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             chheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            44555555522        67788999999999999987 5666566678999999999999999999999999999999


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCCC--EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041          146 PLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~--~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                      +.++ .+..+..|.++|.++.|-+...  .|++|+  .+|+.||.+...++.++. -...+.++..-  ...++.+. .+
T Consensus       101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVat-a~  175 (347)
T KOG0647|consen  101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVAT-AE  175 (347)
T ss_pred             ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEe-cC
Confidence            9999 5567788999999999988665  889999  899999999999888876 44566666553  23555555 69


Q ss_pred             CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeecc
Q 008041          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED  301 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  301 (579)
                      +.|.+|+++.+........-.   -...+++++.-     +|....+.|+-+|++-|..++.+.+...+           
T Consensus       176 r~i~vynL~n~~te~k~~~Sp---Lk~Q~R~va~f-----~d~~~~alGsiEGrv~iq~id~~~~~~nF-----------  236 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESP---LKWQTRCVACF-----QDKDGFALGSIEGRVAIQYIDDPNPKDNF-----------  236 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCc---ccceeeEEEEE-----ecCCceEeeeecceEEEEecCCCCccCce-----------
Confidence            999999998765331111111   12223343332     56666699999999999988765431111           


Q ss_pred             CCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                  .+-+..+.             +. .       ...-..|.+++|.|.-..| ++.+.||+..+|+-+
T Consensus       237 ------------tFkCHR~~-------------~~-~-------~~~VYaVNsi~FhP~hgtl-vTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  237 ------------TFKCHRST-------------NS-V-------NDDVYAVNSIAFHPVHGTL-VTAGSDGTFSFWDKD  281 (347)
T ss_pred             ------------eEEEeccC-------------CC-C-------CCceEEecceEeecccceE-EEecCCceEEEecch
Confidence                        00000000             00 0       0011268899999987788 787779999999964

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.5e-19  Score=159.75  Aligned_cols=242  Identities=13%  Similarity=0.206  Sum_probs=172.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      -++.|++-|+.+|+|+.|++|+|||...    ..+....+.|.+.+..+.+.++                  .       
T Consensus        17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP------------------E-------   71 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP------------------E-------   71 (361)
T ss_pred             eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc------------------c-------
Confidence            3459999999999999999999999643    3466677777777776666555                  1       


Q ss_pred             CCcEEEEEECCCeEEEEEccCCe-------E-EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCC-----
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQ-------L-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG-----  149 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~-------~-~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~-----  149 (579)
                      -+..+++++.|+++.||.-....       - ....+....+.|+++.|.|  -|-.+++++.||.++||+...-     
T Consensus        72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            17889999999999999863211       1 1223345678899999999  4556999999999999986532     


Q ss_pred             -ceeeEee-------cCCCCeeEEEEccC---CCEEEEEC-------CeEEEEECCCC----eeeEEeecCCCCEEEEEE
Q 008041          150 -SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       150 -~~~~~~~-------~~~~~v~~l~~~p~---g~~l~~~~-------~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~  207 (579)
                       .....+.       .+..+..|+.|+|.   ..+||.|+       +.++||....+    ..+.++.+|..+|+.|+|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence             2222222       24457889999984   46788887       47889876543    346678899999999999


Q ss_pred             ecCC----CEEEEEecCCCeEEEEEcCCCc---------------cccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041          208 SDNG----KYVLSSAVGERYIALWRTDGVK---------------KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       208 s~~~----~~l~s~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                      .|+-    ..|++++ .|| |+||.+....               ......+..+..|...+--+.|+     -.|..|.
T Consensus       232 APn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-----mtGtiLs  304 (361)
T KOG2445|consen  232 APNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN-----MTGTILS  304 (361)
T ss_pred             ccccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe-----eeeeEEe
Confidence            9962    2566665 799 9999987421               00111223334444333345555     6789999


Q ss_pred             EEEcCCeEEEEEcC
Q 008041          269 AISETGVCYIWYGQ  282 (579)
Q Consensus       269 ~~~~dg~i~iwd~~  282 (579)
                      +.+.||+|++|...
T Consensus       305 StGdDG~VRLWkan  318 (361)
T KOG2445|consen  305 STGDDGCVRLWKAN  318 (361)
T ss_pred             ecCCCceeeehhhh
Confidence            99999999999754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.2e-20  Score=164.45  Aligned_cols=188  Identities=14%  Similarity=0.208  Sum_probs=158.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC------CC-----------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT-----------  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~------~~-----------  148 (579)
                      ...+.+++.|.+-+||.+.+|.++.++ .||.+.|+++.|++.+.++++++.|++-.||..      ..           
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe  238 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE  238 (481)
T ss_pred             CcceeecccccceeEEeeccccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence            446888999999999999999999777 789999999999999999999999999999962      11           


Q ss_pred             -------------------C----ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE
Q 008041          149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR  203 (579)
Q Consensus       149 -------------------~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~  203 (579)
                                         +    -++..+++|.+.|.+..|-..|+.+++++  .+..+||+++++.+..+.||....+
T Consensus       239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence                               0    13456788999999999999999999999  8999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      .+.-+|..+.+++++ .|.+.++||++..-.    .+..+..+...+..+.|.      -+..+++|+.|.+|++||+++
T Consensus       319 HcstHptQrLVvTsS-rDtTFRLWDFReaI~----sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAIQ----SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             ccccCCcceEEEEec-cCceeEeccchhhcc----eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence            999999988888776 899999999995321    233445555566666674      557789999999999999987


Q ss_pred             ce
Q 008041          284 IE  285 (579)
Q Consensus       284 ~~  285 (579)
                      .+
T Consensus       388 MR  389 (481)
T KOG0300|consen  388 MR  389 (481)
T ss_pred             cc
Confidence            64

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=1.3e-19  Score=169.79  Aligned_cols=205  Identities=14%  Similarity=0.196  Sum_probs=160.1

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCc
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATH-GSCIYSAGADGM  140 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~  140 (579)
                      ...++++.|.|..+       ..++++|...|+|-+||+.+.+.   -..+...|..+|.++.|+|. ...+++.|.||+
T Consensus       186 ~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  186 DRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             ccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            45788999999874       37899999999999999953321   11233679999999999994 456999999999


Q ss_pred             EEEEeCCCCce--eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEE
Q 008041          141 VCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       141 v~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      |+.-|++.+..  +.........+..+.|+.+...++.++  |...+||.+++.. ...+.-|...|.+++++|...+++
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99999986633  333333445788899998888888777  9999999998655 666677888999999999887655


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ++++.|++.+|||++.-..... .....-.+...+..++|+     |.+..|++.+.|..|+|||..
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeecc
Confidence            5555899999999998765422 233334556677888888     888889999999999999973

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=5.9e-19  Score=165.45  Aligned_cols=281  Identities=14%  Similarity=0.116  Sum_probs=201.4

Q ss_pred             CCCcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCe----EEEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg--~~lasg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      .+++|  .+++|+|.-  +.+|+|+.-|+|-+||+.+.+    -+..|..|..++.                  ++.|+|
T Consensus       185 ~~~Ri--t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs------------------~l~F~P  244 (498)
T KOG4328|consen  185 TDRRI--TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVS------------------GLKFSP  244 (498)
T ss_pred             cccce--EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcccc------------------ceEecC
Confidence            35677  666999965  488889999999999995322    2334444554444                  555555


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-e
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-L  152 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~  152 (579)
                      .+        ...+++.+.||+|++-|+.++...  ... ..-.....++.|+.+...++.+..=|...+||++++.. .
T Consensus       245 ~n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  245 AN--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             CC--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence            44        667999999999999999876532  222 12345677889998888888888888999999997654 5


Q ss_pred             eEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      ..+.-|+..|++++++|... ++++++  ++.+|||++.-..    +.....|...|.+..|||++-.|++.+ .|..|+
T Consensus       316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IR  394 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIR  394 (498)
T ss_pred             hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceE
Confidence            56777888999999999665 566777  8999999986322    233356999999999999988899887 799999


Q ss_pred             EEEcCC--CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc-cCCeeEEeeeccC
Q 008041          226 LWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSEDV  302 (579)
Q Consensus       226 vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~  302 (579)
                      |||..-  ....   ....+.|....-+...--+..|.|+..++++|..-..|-|||...++.+.. +.|....+.+...
T Consensus       395 v~dss~~sa~~~---p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~  471 (498)
T KOG4328|consen  395 VFDSSCISAKDE---PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNE  471 (498)
T ss_pred             EeecccccccCC---ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccccccccee
Confidence            999841  1111   223445554443333222344569999999999999999999998886665 5565556666665


Q ss_pred             Ccccccccchhhhhccc
Q 008041          303 NSKSQKSATAAIFAAKL  319 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~  319 (579)
                      +.|.+.    .+++|+.
T Consensus       472 ~HP~~~----~~~aG~~  484 (498)
T KOG4328|consen  472 FHPMRD----TLAAGGN  484 (498)
T ss_pred             eccccc----ceeccCC
Confidence            666655    4555554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=175.60  Aligned_cols=263  Identities=15%  Similarity=0.091  Sum_probs=192.5

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~  146 (579)
                      .+.++|.+.         +.+|++++.+|.|++|+.... +.. .+..-+...|.+++.  ++.+|++|+.+++|..|.+
T Consensus        16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence            455666554         779999999999999998876 333 232337778888876  4568999999999999999


Q ss_pred             CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                      .+++.-..+....-++.+++|+.+|+++|.|+  -.|++.++........+.+|.++|.++.|+|.+.+|++++ .||.|
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v  162 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV  162 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence            88876545555567899999999999999999  6899999999888999999999999999999999999987 69999


Q ss_pred             EEEEcCCCccccc-eeee-eeecC-ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe-eec
Q 008041          225 ALWRTDGVKKQSA-SCVL-AMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSE  300 (579)
Q Consensus       225 ~vwd~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~  300 (579)
                      ++|++..+..... ..+. ..+.. ..+..-..|+     |+|..+++.+.|+.|++|+..+++....+.+..... .+.
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence            9999998764310 0000 01111 3344556666     999999999999999999999888776554332221 223


Q ss_pred             cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCccee
Q 008041          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL  364 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (579)
                      ..|+|.|+    +|+++..++.       +.++.-..    .+. ......|.+++|-|++.-+
T Consensus       238 ~~wsPnG~----YiAAs~~~g~-------I~vWnv~t----~~~-~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  238 LQWSPNGK----YIAASTLDGQ-------ILVWNVDT----HER-HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             EEEcCCCc----EEeeeccCCc-------EEEEeccc----chh-ccccceeEEEecCCCCCee
Confidence            33778888    8888887553       33332111    111 1233458888888888776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.2e-18  Score=154.07  Aligned_cols=225  Identities=12%  Similarity=0.125  Sum_probs=169.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+|+  ++|+|.++ ..+++|+-||.|+.+|+.++.... +..|..++.                  |+...+.     
T Consensus        53 ~~~pl--L~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~------------------ci~~~~~-----  105 (323)
T KOG1036|consen   53 HGAPL--LDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIR------------------CIEYSYE-----  105 (323)
T ss_pred             cCCce--eeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCCCceE------------------EEEeecc-----
Confidence            46899  99999885 477899999999999999887654 334444444                  4444432     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--ST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~  159 (579)
                          .+.+++|+.|+.|++||++.......+.  ....|.++..  .|+.|+.|+.|..|.+||+++.......+.  -+
T Consensus       106 ----~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk  177 (323)
T KOG1036|consen  106 ----VGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK  177 (323)
T ss_pred             ----CCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence                5679999999999999999755543442  3458988887  567899999999999999987654433222  23


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCC----eeeEEeecCC---------CCEEEEEEecCCCEEEEEecCCCeE
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~----~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                      -.+.|+++-|++.-+++++  |.|.+=.++..    +....|+.|.         .||++|+|+|-...|+++| .||.|
T Consensus       178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V  256 (323)
T KOG1036|consen  178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIV  256 (323)
T ss_pred             eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceE
Confidence            4789999999888888887  88877655544    3344566664         4799999999988999998 69999


Q ss_pred             EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      .+||+...+..     ..+......+..+.|+     .+|..||+++.
T Consensus       257 ~~Wd~~~rKrl-----~q~~~~~~SI~slsfs-----~dG~~LAia~s  294 (323)
T KOG1036|consen  257 NIWDLFNRKRL-----KQLAKYETSISSLSFS-----MDGSLLAIASS  294 (323)
T ss_pred             EEccCcchhhh-----hhccCCCCceEEEEec-----cCCCeEEEEec
Confidence            99999987744     3344445567788887     89999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1.2e-18  Score=156.77  Aligned_cols=296  Identities=18%  Similarity=0.222  Sum_probs=197.9

Q ss_pred             CcccceEEEEcc-----CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         4 ~~V~~l~~~fsp-----dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .+|  ..++|++     .-+.+|+++. .++.+|+....--++.++.-..+            .+ ....-.++|.-...
T Consensus        39 ~~I--~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~------------d~-~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   39 KPI--FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE------------DH-DESFYTCSWSYDSN  102 (385)
T ss_pred             Ccc--ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC------------CC-CcceEEEEEEecCC
Confidence            566  4448875     2346777774 47889887543222222211100            11 22333456665433


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEee-
Q 008041           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR-  156 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~-  156 (579)
                      .     ++.++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. ++++++|.|..|++||+++..++..|- 
T Consensus       103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence            2     2678899999999999999999998666 6899999999999965 679999999999999999999998865 


Q ss_pred             --cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee------e----------------E------EeecCCCCEEE
Q 008041          157 --ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------M----------------Q------KFSGHPGAVRF  204 (579)
Q Consensus       157 --~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~------~----------------~------~~~~h~~~v~~  204 (579)
                        +|.+.|.++.|+++|.++++++  .+|++|++...+.      .                .      +-.-|...|.|
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence              5888999999999999999999  8999999974321      0                0      11125555666


Q ss_pred             EEEecCCCEEEEEecCCCeEEEEEcCCC-cc-----ccce---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041          205 MTFSDNGKYVLSSAVGERYIALWRTDGV-KK-----QSAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       205 l~~s~~~~~l~s~~~~d~~i~vwd~~~~-~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  275 (579)
                      +.|-  |.++++-+ -++.|..|....- +.     .+..   ....+.-+...+-.+.|   .++|-++.||.|.+.|.
T Consensus       257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf---~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF---AFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE---eecHHHHHHhhccCCCc
Confidence            6664  57888877 5889999988321 11     1111   11222222222222222   24488899999999999


Q ss_pred             EEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008041          276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL  355 (579)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~  355 (579)
                      +++||+++.+....   ++.  .         +                                     ......|.+.
T Consensus       331 v~vwdL~~~ep~~~---ttl--~---------~-------------------------------------s~~~~tVRQ~  359 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKC---TTL--T---------H-------------------------------------SKSGSTVRQT  359 (385)
T ss_pred             EEEEECCCCCCccC---ceE--E---------e-------------------------------------ccccceeeee
Confidence            99999876543200   000  0         0                                     0012257888


Q ss_pred             eecCCcceeeccccceecccceee
Q 008041          356 NCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       356 ~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +||.||.+| +-..+|+++.-|+.
T Consensus       360 sfS~dgs~l-v~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  360 SFSRDGSIL-VLVCDDGTVWRWDR  382 (385)
T ss_pred             eecccCcEE-EEEeCCCcEEEEEe
Confidence            999999999 55556999888875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.1e-18  Score=161.86  Aligned_cols=245  Identities=15%  Similarity=0.185  Sum_probs=184.9

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..||  -+++|.|+|. .+++++.-..+..||+.+.+....-. .              .|+.   -..+.-+..++   
T Consensus       257 ~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~-~--------------~g~e---~~~~e~FeVSh---  313 (514)
T KOG2055|consen  257 KFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP-P--------------YGVE---EKSMERFEVSH---  313 (514)
T ss_pred             cCcc--ceeeecCCCceEEEecccceEEEEeeccccccccccC-C--------------CCcc---cchhheeEecC---
Confidence            3678  4559999998 88889988899999998887653211 0              1111   00111111111   


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-  160 (579)
                         .+++|++.+..|.|++....+++.+..+.  -.+.|.+++|+.+++.|++++.+|.|++||++...+++.|....+ 
T Consensus       314 ---d~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v  388 (514)
T KOG2055|consen  314 ---DSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV  388 (514)
T ss_pred             ---CCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence               17799999999999999999999886663  467899999999999999999999999999999999999885433 


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCC
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG  231 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~  231 (579)
                      .=++++.+++|.++|+|+  |.|.|||.++      .+++.++..-...|+++.|+||++.|+.++. .+..+++-.+.+
T Consensus       389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            346788889999999999  9999999653      3566666666788999999999998877653 345788877766


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      -..-+  .--+...+-..++|+.|+     |.|.+++.|..+|++.+|.+.
T Consensus       469 ~TVFs--NfP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 CTVFS--NFPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeec--cCCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence            43211  000112334557889998     999999999999999999763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=1.8e-18  Score=155.65  Aligned_cols=237  Identities=12%  Similarity=0.173  Sum_probs=178.9

Q ss_pred             EEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041           10 LTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        10 ~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .|+|+-|    ..++|.|+.-|.|+|.|+.++++...+.+|..+++.+-+.|.                          .
T Consensus        94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~--------------------------~  147 (385)
T KOG1034|consen   94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD--------------------------R  147 (385)
T ss_pred             EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------C
Confidence            4455543    348999999999999999999999999999999988877776                          2


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee----------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----------  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~----------  153 (579)
                      .+++++++.|..|++||+++..++..+  ..+|.+.|.++.|+++|.+|++|+.|.++++|++...+...          
T Consensus       148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            788999999999999999999987655  37899999999999999999999999999999997321100          


Q ss_pred             ------------------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCe-------------eeEEeecCC
Q 008041          154 ------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHK-------------KMQKFSGHP  199 (579)
Q Consensus       154 ------------------~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-~~~-------------~~~~~~~h~  199 (579)
                                        +-..|...|-|+.|-  |+++++-+  +.|..|..- -.+             .+.++.-..
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~  305 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM  305 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence                              112355566666665  57888766  899999761 111             123333334


Q ss_pred             CCEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041          200 GAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       200 ~~v~~l~~--s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  277 (579)
                      ..|.-+.|  .|-++.|+.+. ..|.|.+||++...... .....-......++-.+|+     .||..|+..+.|++|.
T Consensus       306 c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  306 CDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTVW  378 (385)
T ss_pred             cceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCcc-CceEEeccccceeeeeeec-----ccCcEEEEEeCCCcEE
Confidence            55666655  56677888876 79999999999876531 1122222334556667777     8999999999999999


Q ss_pred             EEEc
Q 008041          278 IWYG  281 (579)
Q Consensus       278 iwd~  281 (579)
                      -||.
T Consensus       379 rwdr  382 (385)
T KOG1034|consen  379 RWDR  382 (385)
T ss_pred             EEEe
Confidence            9984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.3e-17  Score=148.83  Aligned_cols=254  Identities=11%  Similarity=0.088  Sum_probs=173.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC---------Cce
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT---------GSL  151 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~---------~~~  151 (579)
                      ++.+++|+.|++|+|||.......+.   --+.|.+.|..+.|.+  -|+.+++|+.|+++.||.=..         ...
T Consensus        25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~  104 (361)
T KOG2445|consen   25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR  104 (361)
T ss_pred             CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence            78899999999999999765433222   1267999999999965  588899999999999997421         123


Q ss_pred             eeEeecCCCCeeEEEEcc--CCCEEEEEC--CeEEEEECCCC------eeeEEee-------cCCCCEEEEEEecC---C
Q 008041          152 LGKFRASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDH------KKMQKFS-------GHPGAVRFMTFSDN---G  211 (579)
Q Consensus       152 ~~~~~~~~~~v~~l~~~p--~g~~l~~~~--~~i~vwd~~~~------~~~~~~~-------~h~~~v~~l~~s~~---~  211 (579)
                      ..++......|+.+.|.|  -|-.+|+++  |.++||+.-..      ....++.       .+..+..|+.|+|.   .
T Consensus       105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~  184 (361)
T KOG2445|consen  105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE  184 (361)
T ss_pred             EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence            345666677999999999  466788877  99999976543      2222222       46678889999874   3


Q ss_pred             CEEEEEecCC-----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          212 KYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       212 ~~l~s~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      .+|+.++ .+     +.++||........ ...+..+..+...+..++|.+..- ..-+.||+++.|| |+||++.....
T Consensus       185 p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r~y~~lAvA~kDg-v~I~~v~~~~s  260 (361)
T KOG2445|consen  185 PLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-RSYHLLAVATKDG-VRIFKVKVARS  260 (361)
T ss_pred             ceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-CceeeEEEeecCc-EEEEEEeeccc
Confidence            5777776 33     37888887665422 224455667777788888873221 1236799999999 99998754321


Q ss_pred             ecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeec
Q 008041          287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM  366 (579)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~  366 (579)
                      -.         .......++.-            +     +         ........+..|..+|+++.|.--|..| .
T Consensus       261 ~i---------~~ee~~~~~~~------------~-----~---------l~v~~vs~~~~H~~~VWrv~wNmtGtiL-s  304 (361)
T KOG2445|consen  261 AI---------EEEEVLAPDLM------------T-----D---------LPVEKVSELDDHNGEVWRVRWNMTGTIL-S  304 (361)
T ss_pred             hh---------hhhcccCCCCc------------c-----c---------cceEEeeeccCCCCceEEEEEeeeeeEE-e
Confidence            10         00000011100            0     1         0111222455799999999999999999 8


Q ss_pred             cccceecccceee
Q 008041          367 SQSLLKSKRGRYV  379 (579)
Q Consensus       367 s~s~d~~~~~w~~  379 (579)
                      |.+.||.+|+|..
T Consensus       305 StGdDG~VRLWka  317 (361)
T KOG2445|consen  305 STGDDGCVRLWKA  317 (361)
T ss_pred             ecCCCceeeehhh
Confidence            9999999999976

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.80  E-value=2.6e-18  Score=152.32  Aligned_cols=277  Identities=12%  Similarity=0.087  Sum_probs=194.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCe------EE----E----EecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQ------LK----W----RLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~------~~----~----~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~  150 (579)
                      +.++++|..||.|.+||++...      .+    .    .-..+|.-.|.++.|-| |...|.+++-|.++++||..+-+
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ  135 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ  135 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence            8899999999999999998532      11    1    11246778899999999 55678889999999999999998


Q ss_pred             eeeEeecCCCCeeEEEEccCCC---EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          151 LLGKFRASTKGISCMAVSSDGK---MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~---~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      ....|+ .++.|++-+++|-..   ++|+|.  -.|++.|+.+|..-.++.||.+.|.++.|+|...+++..++.||.|+
T Consensus       136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence            888887 467888889998443   455555  58999999999999999999999999999999998877777899999


Q ss_pred             EEEcCCCccc----------cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041          226 LWRTDGVKKQ----------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       226 vwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      +||++....-          ......+-..+...+..++|.     .++.++++.+.|.++++|+..+|+......+...
T Consensus       215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~  289 (397)
T KOG4283|consen  215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVWNMESGRNTLREFGPII  289 (397)
T ss_pred             EEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEeecccCccccccccccc
Confidence            9999865210          000111122333445566666     8999999999999999999988864321111100


Q ss_pred             EeeeccCCcccccccch-hhhhccccce-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008041          296 LSSSEDVNSKSQKSATA-AIFAAKLQDI-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~  373 (579)
                      .         ..+.... .+-++..+-. ...+++.+.+ .....+.....+..|...+.+.++.||=+.. .+|+.|+.
T Consensus       290 ~---------n~~~~~~~~~~~~~s~vfv~~p~~~~lal-l~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~-~tg~~d~n  358 (397)
T KOG4283|consen  290 H---------NQTTSFAVHIQSMDSDVFVLFPNDGSLAL-LNLLEGSFVRRLSTHLKRINCAAYRPDFEQC-FTGDMNGN  358 (397)
T ss_pred             c---------cccccceEEEeecccceEEEEecCCeEEE-EEccCceEEEeeecccceeeEEeecCchhhh-hccccCCc
Confidence            0         0000000 1112222111 1111222221 1122345566777898789999999999888 99999999


Q ss_pred             ccceee
Q 008041          374 KRGRYV  379 (579)
Q Consensus       374 ~~~w~~  379 (579)
                      +..|..
T Consensus       359 i~~w~p  364 (397)
T KOG4283|consen  359 IYMWSP  364 (397)
T ss_pred             cccccc
Confidence            999965

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3.2e-18  Score=160.04  Aligned_cols=205  Identities=14%  Similarity=0.148  Sum_probs=158.0

Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE--------------------EEecCCCCCCEEEEEEccC
Q 008041           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--------------------WRLSDCHPGGVSAISFATH  128 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--------------------~~~~~~h~~~V~~l~~~~~  128 (579)
                      -|+.|.....  +....++++|+|+.+..|.|||+.--..+                    .....+|++.|.++.|+.+
T Consensus       177 LC~ewld~~~--~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  177 LCIEWLDHGS--KSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             hhhhhhhcCC--CCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            5777876511  11112889999999999999998632110                    0012369999999999875


Q ss_pred             CC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE
Q 008041          129 GS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (579)
Q Consensus       129 ~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~  204 (579)
                      -+ .|++||.|.+|++||+.+|++..++..|.+.|.++.|+|. ..++++|+  +++.+.|++........-...+.|-.
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence            54 5899999999999999999999999999999999999995 56777787  99999999953322222224578999


Q ss_pred             EEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       205 l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      ++|.|.....+.++..||+|+-+|++...    .+++++..|...+++++++.    ....++++++.|+.+++|++..
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEeecC
Confidence            99999776555555589999999999875    25788888888899988872    3457899999999999998653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=2.5e-18  Score=166.92  Aligned_cols=122  Identities=21%  Similarity=0.397  Sum_probs=94.2

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++..|.++  .||| +..+||+|+.|..|+||.+-.|-.. .+..           +.+.-++....+.|+.+.+..   
T Consensus        78 H~d~VtDl--~FspF~D~LLAT~S~D~~VKiW~lp~g~~q-~LSa-----------pe~~~g~~~~~vE~l~fHpTa---  140 (1012)
T KOG1445|consen   78 HGDQVTDL--GFSPFADELLATCSRDEPVKIWKLPRGHSQ-KLSA-----------PEIDVGGGNVIVECLRFHPTA---  140 (1012)
T ss_pred             ccceeecc--CccccchhhhhcccCCCeeEEEecCCCccc-ccCC-----------cceeecCCceEEEEeecccCc---
Confidence            34567666  8999 4568999999999999998744322 1111           111224556667777777763   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                            .-|+..+..|.++|||+.+++....+ .+|.+.|.+..|+.||..+++++.|+.|+|||.+
T Consensus       141 ------Dgil~s~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  141 ------DGILASGAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             ------CceEEeccCceEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence                  34777788899999999999988666 6899999999999999999999999999999976

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.2e-19  Score=184.22  Aligned_cols=241  Identities=15%  Similarity=0.129  Sum_probs=181.5

Q ss_pred             EEEEccCCCE----EEEEeCCCcEEEEECCCC------eEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041           10 LTSFSPALDY----FAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus        10 ~~~fspdg~~----lasg~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|.+.|..    +|.|..||.|.+||...-      ..+.++..|.+.|..+-|++.                  .  
T Consensus        69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------------q--  128 (1049)
T KOG0307|consen   69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------------Q--  128 (1049)
T ss_pred             eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------------C--
Confidence            3488887765    888889999999998652      133444555555554444443                  2  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                            ++++++|..+|+|.|||+..-+..... ...-.+.|.+++|+..-.+ |++++.+|++.|||++..+.+-.+..
T Consensus       129 ------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~  202 (1049)
T KOG0307|consen  129 ------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD  202 (1049)
T ss_pred             ------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence                  779999999999999999876554333 2234578999999885544 88899999999999998888877776


Q ss_pred             CCC--CeeEEEEccCCC-EEEEEC-----CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEE
Q 008041          158 STK--GISCMAVSSDGK-MLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW  227 (579)
Q Consensus       158 ~~~--~v~~l~~~p~g~-~l~~~~-----~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vw  227 (579)
                      +.+  .+..++|+|++. .+++++     -.|.+||++.. ..++++.+|...|.++.|++.+ +++++++ .|+.|.+|
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w  281 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW  281 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence            655  578999999763 455554     38999999853 4677889999999999999876 6777777 79999999


Q ss_pred             EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      +..+++..     ..+........-+.|++    .+...+++++.||.|.||.+.++..
T Consensus       282 N~~tgEvl-----~~~p~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  282 NPNTGEVL-----GELPAQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             cCCCceEe-----eecCCCCcceeeeeecC----CCcchhhhheeccceeeeeeecCCc
Confidence            99998733     45555555555555651    3456888889999999999876653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=7.2e-18  Score=152.73  Aligned_cols=278  Identities=12%  Similarity=0.135  Sum_probs=184.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceee--EeecCC-C
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLG--KFRAST-K  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~-~  160 (579)
                      .+.++++..+|.|++||..+++.+..+ +++...++.+.|..  ....+++|+.||+|++||++......  .+..+. .
T Consensus        40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            467999999999999999999887666 67888899999977  45669999999999999999765443  345555 4


Q ss_pred             CeeEEEEccCCCEEEEEC------CeEEEEECCCCee-eEEe-ecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCC
Q 008041          161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~-~~~~-~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~  231 (579)
                      +..|++..-.++++++|.      -.+.+||++..+. +..+ ..|...|+++.|+|... .|++|+ -||.|.+||+..
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vDGLvnlfD~~~  197 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VDGLVNLFDTKK  197 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-ccceEEeeecCC
Confidence            778888877888888887      3799999998766 5544 67999999999999765 556655 799999999987


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee-------e---cc
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-------S---ED  301 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~---~~  301 (579)
                      .....  .....-.....+..+.|.    .+.-+.|.+-+..++..+|+++.+..............       +   .+
T Consensus       198 d~EeD--aL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~  271 (376)
T KOG1188|consen  198 DNEED--ALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN  271 (376)
T ss_pred             Ccchh--hHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence            64321  112222333445555554    13335699999999999999988875433322211000       0   00


Q ss_pred             CCcccccccchhhhhccccceecCCceEEEEE-e---CCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceecccc
Q 008041          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVA-Y---GLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (579)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~  376 (579)
                      ..++..+ .. ..+++...+     .+.++.. +   ++. ......+.+ |..-|..+.|...+.++ .||++|+.+.+
T Consensus       272 ~~~~~~~-~~-~~l~g~~~n-----~~~~~~~~~~~s~~~-~~~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~  342 (376)
T KOG1188|consen  272 EHSPGDK-DT-CALAGTDSN-----KGTIFPLVDTSSGSL-LTEPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQA  342 (376)
T ss_pred             cccCCCc-ce-EEEeccccC-----ceeEEEeeecccccc-cCccccccCCcHHHHHHHhhhccccee-eccCCCceEEE
Confidence            0111111 01 111111111     2222211 1   111 112223344 55567888888888999 99999999999


Q ss_pred             eeee
Q 008041          377 RYVQ  380 (579)
Q Consensus       377 w~~~  380 (579)
                      |.++
T Consensus       343 Wk~~  346 (376)
T KOG1188|consen  343 WKVE  346 (376)
T ss_pred             EecC
Confidence            9863

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=9.3e-18  Score=154.57  Aligned_cols=208  Identities=17%  Similarity=0.267  Sum_probs=162.9

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +++||  +.++|+| +...+|+||.|.+|.||++-.+.+...+.   .++..       ..|| ...+..+.|.|..   
T Consensus        80 Ht~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---epvv~-------L~gH-~rrVg~V~wHPtA---  143 (472)
T KOG0303|consen   80 HTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---EPVVE-------LYGH-QRRVGLVQWHPTA---  143 (472)
T ss_pred             ccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcc---cceEE-------Eeec-ceeEEEEeecccc---
Confidence            56888  6679999 45689999999999999987665443322   11110       1233 3355567787765   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           .+.|++++.|..|.+||+.+|+...++.  |.+.|+++.|+.||.++++++.|+.|++||.++++.+..-.+|.+
T Consensus       144 -----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  144 -----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             -----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence                 6789999999999999999999876763  999999999999999999999999999999999999998878877


Q ss_pred             -CeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          161 -GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       161 -~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                       ....+.|-.+|.++.+|-     .++-+||..+-+.   ..++. ..+.|.---|.+|.+.++.+|-+|+.|+.|.+..
T Consensus       217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence             556677888999555554     5899998776432   33443 4566777788899999988888999999999887


Q ss_pred             Cc
Q 008041          232 VK  233 (579)
Q Consensus       232 ~~  233 (579)
                      ..
T Consensus       296 d~  297 (472)
T KOG0303|consen  296 EP  297 (472)
T ss_pred             CC
Confidence            65

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=4.3e-17  Score=144.27  Aligned_cols=259  Identities=14%  Similarity=0.113  Sum_probs=180.2

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCe---------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008041           86 SSLLVLGTGG-------GDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~  149 (579)
                      ..+++++..+       ..+.||.+....         ++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus        76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es  154 (370)
T KOG1007|consen   76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES  154 (370)
T ss_pred             CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence            5556666553       127899987532         23334345667999999999999888774 888999999887


Q ss_pred             ce-eeEeec-----CCCCeeEEEEcc--CCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEec
Q 008041          150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       150 ~~-~~~~~~-----~~~~v~~l~~~p--~g~~l~~~~-~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      .. +..+..     +....++-+|+|  +|+.+++.+ +++..||+++.++...+ ..|...|..+.|+|+.+++++++.
T Consensus       155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g  234 (370)
T KOG1007|consen  155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG  234 (370)
T ss_pred             cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence            65 333322     345678889998  899999888 89999999998776555 578889999999999886555555


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      +||.|++||.+..+.    .+..+..+...+-++.|++    ...++|++|+.|..|.+|...+...-..+........ 
T Consensus       235 DdgyvriWD~R~tk~----pv~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese-  305 (370)
T KOG1007|consen  235 DDGYVRIWDTRKTKF----PVQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE-  305 (370)
T ss_pred             CCccEEEEeccCCCc----cccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccccccccccc-
Confidence            899999999998764    3566666776777777761    3467899999999999998654321111100000000 


Q ss_pred             ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                          .++..         +... .+      .     .....++++..|...|.+++||.-..++.+|-|.||.+-+-++
T Consensus       306 ----~e~~d---------seer-~k------p-----L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  306 ----SEDED---------SEER-VK------P-----LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ----Ccchh---------hHHh-cc------c-----ccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence                00000         0000 00      0     1112445777899999999999999999899999999877766

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.5e-18  Score=180.20  Aligned_cols=245  Identities=16%  Similarity=0.164  Sum_probs=175.9

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC---CeE--EEEecCCCCCCEEEEEEccCCC-EEEEEeCC
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGAD  138 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~---~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d  138 (579)
                      ...+..+.|.+...+.     ..+|+.|..||.|.+||...   +..  +......|.+.|.++.|++... .+++|+.|
T Consensus        64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~  138 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD  138 (1049)
T ss_pred             cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence            4577889998875432     36799999999999999876   221  1122367999999999999655 89999999


Q ss_pred             CcEEEEeCCCCceeeEee--cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCC
Q 008041          139 GMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNG  211 (579)
Q Consensus       139 ~~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~s~~~  211 (579)
                      |.|.|||+..-+.-.+..  .....|.+++|+..- .+|++++  |.+.|||++..+.+-.+..|.+  .+..+.|+|++
T Consensus       139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH  218 (1049)
T ss_pred             CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence            999999998755444432  134589999999754 4566666  7999999999988888876654  47789999987


Q ss_pred             C-EEEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          212 K-YVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       212 ~-~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      . .+++++.+|+  .|.+||++.....    ...+.+|..-+-.+.|+    ..|.+++++++.|++|.+||.++++.+.
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP----~k~~~~H~~GilslsWc----~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSP----LKILEGHQRGILSLSWC----PQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCc----hhhhcccccceeeeccC----CCCchhhhcccCCCCeeEecCCCceEee
Confidence            4 4555553343  6999999886532    23344555545555565    1455999999999999999999999998


Q ss_pred             ccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      .+.. ...++....|++..-.   .+++++++|.+.++
T Consensus       291 ~~p~-~~nW~fdv~w~pr~P~---~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  291 ELPA-QGNWCFDVQWCPRNPS---VMAAASFDGKISIY  324 (1049)
T ss_pred             ecCC-CCcceeeeeecCCCcc---hhhhheeccceeee
Confidence            7765 2233333334444332   78888998865443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.9e-17  Score=148.45  Aligned_cols=189  Identities=21%  Similarity=0.308  Sum_probs=149.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +.+-...++.|+++++.|..|.+|+++ |+.+..+............+|+                           +.+
T Consensus       191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF  242 (420)
T KOG2096|consen  191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF  242 (420)
T ss_pred             EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence            444666778999999999999999998 8888777654444443444444                           889


Q ss_pred             EEEEECCCeEEEEEccC---CeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC----C---ceee
Q 008041           89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----G---SLLG  153 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~---~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~----~---~~~~  153 (579)
                      ++++.-.-+|++|.+--   |..     +.. ++||.+.|..++|+++...+++.+.||+.++||..-    +   +.++
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk  321 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK  321 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence            99999999999999853   221     122 379999999999999999999999999999999752    1   2222


Q ss_pred             Ee----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       154 ~~----~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      ++    ....+....++.+|+|+.|+.+. ..+++|..++|+...++ ..|...|.+|+|+++|++++++|  |+.+++.
T Consensus       322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~  399 (420)
T KOG2096|consen  322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI  399 (420)
T ss_pred             cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence            22    11233445899999999999998 68999999999877766 46899999999999999999985  8999988


Q ss_pred             E
Q 008041          228 R  228 (579)
Q Consensus       228 d  228 (579)
                      .
T Consensus       400 ~  400 (420)
T KOG2096|consen  400 R  400 (420)
T ss_pred             c
Confidence            6

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=7.4e-18  Score=159.38  Aligned_cols=214  Identities=14%  Similarity=0.166  Sum_probs=169.6

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      |++......|+++|+..+.|+|||++...+.+.+++|...+..+.|...                           ..+|
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------------------Deyi  136 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------------------DEYI  136 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------------------ccee
Confidence            3344455589999999999999999977777778888777776666655                           7889


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      ++++..|+|.|..+.++.....+..+....|.-+.|+|..+. |.+++.+|.|.+||+....++.. ...|..+...|+|
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF  216 (673)
T ss_pred             EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence            999999999999999988765554444556779999997776 67789999999999987766665 4568889999999


Q ss_pred             ccCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          168 SSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +|... +|++.+  ..|.+||.+..+....+. ...|.+.++|+++|.+|++|. ..|.|..||++..+..    +....
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P----v~v~s  290 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP----VAVRS  290 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC----ceEee
Confidence            99665 455555  799999999887776665 457889999999999999887 5899999999987643    33444


Q ss_pred             cCceeEEeEEec
Q 008041          245 HPAVFMDCRCID  256 (579)
Q Consensus       245 ~~~~~~~~~~~~  256 (579)
                      .+...+.+++|.
T Consensus       291 ah~~sVt~vafq  302 (673)
T KOG4378|consen  291 AHDASVTRVAFQ  302 (673)
T ss_pred             ecccceeEEEee
Confidence            555557777775

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=4.1e-17  Score=154.43  Aligned_cols=287  Identities=13%  Similarity=0.155  Sum_probs=196.1

Q ss_pred             CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe--EEEEEcc
Q 008041           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVS  104 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~  104 (579)
                      ..+++||.........+..+..                ...+..+.|..          .+.+++++..|.  |++|.-.
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~   65 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKD   65 (673)
T ss_pred             CceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEeccc
Confidence            3699999876655444432222                11245566765          344666666655  7777644


Q ss_pred             CC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--Ce
Q 008041          105 AG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQ  180 (579)
Q Consensus       105 ~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~  180 (579)
                      ..  ++. .+.....+.-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++-...+||+++  |.
T Consensus        66 g~~~~Vp-~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd  144 (673)
T KOG4378|consen   66 GKTPEVP-RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD  144 (673)
T ss_pred             CCCCccc-eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc
Confidence            32  221 11111122344555555568999999999999999997777888999999999999999999999998  89


Q ss_pred             EEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCc
Q 008041          181 LKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG  259 (579)
Q Consensus       181 i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                      |.|..+.++..-.+|... ...|+-+.|+|..+++++..+++|.|.+||+....+.   .. ....|......++|++  
T Consensus       145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~-~~~~HsAP~~gicfsp--  218 (673)
T KOG4378|consen  145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FH-ASEAHSAPCRGICFSP--  218 (673)
T ss_pred             EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cc-hhhhccCCcCcceecC--
Confidence            999999999888788644 3456689999999988777778999999999887643   21 2234455556777772  


Q ss_pred             ccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC
Q 008041          260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK  339 (579)
Q Consensus       260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~  339 (579)
                        .+...|++.+.|..|.+||....+....+.-.. ..... .|++++.    ++++|+..|.++.||       =....
T Consensus       219 --sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstv-af~~~G~----~L~aG~s~G~~i~YD-------~R~~k  283 (673)
T KOG4378|consen  219 --SNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTV-AFSECGT----YLCAGNSKGELIAYD-------MRSTK  283 (673)
T ss_pred             --CccceEEEecccceEEEeecccccccceeeecC-Cccee-eecCCce----EEEeecCCceEEEEe-------cccCC
Confidence              245678888999999999987554332211110 01111 2566766    788888866444332       13344


Q ss_pred             ceeEEEecCCCCcEEEeecCCc
Q 008041          340 PSFQKILVNSGEDINLNCSQDG  361 (579)
Q Consensus       340 ~~~~~~~~h~~~v~~~~~s~dg  361 (579)
                      ........|...|.+++|-|--
T Consensus       284 ~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  284 APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CCceEeeecccceeEEEeeecc
Confidence            5556777899999999998875

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.76  E-value=1.8e-17  Score=151.85  Aligned_cols=205  Identities=13%  Similarity=0.081  Sum_probs=154.4

Q ss_pred             CCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCC----------------CceeeEeecCCCCeeEEEEccCCC-EEE
Q 008041          115 CHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLT----------------GSLLGKFRASTKGISCMAVSSDGK-MLA  175 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~g~-~l~  175 (579)
                      +|.+.++-+...+-+  .+.++-+..|.|++||+..                .+++.++.+|...=+.++|||--. .++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            466777777776654  4466667899999999852                357788899998889999999322 466


Q ss_pred             EEC--CeEEEEECCCCeee---EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeE
Q 008041          176 TAA--GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM  250 (579)
Q Consensus       176 ~~~--~~i~vwd~~~~~~~---~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  250 (579)
                      +|.  +.|++|...++.-.   ..|.+|+..|-.++|||..+-++++|+-|++|+|||++.+.+..  ++... .+...+
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~k-Ah~sDV  305 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTK-AHNSDV  305 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEee-ccCCce
Confidence            776  89999999887542   34678999999999999876544444479999999999986543  55553 444477


Q ss_pred             EeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEE
Q 008041          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT  330 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  330 (579)
                      .++.|+     .+-.+|++|+.||+++|||+++.+.-                    +    +                 
T Consensus       306 NVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~~--------------------~----p-----------------  339 (440)
T KOG0302|consen  306 NVISWN-----RREPLLASGGDDGTLSIWDLRQFKSG--------------------Q----P-----------------  339 (440)
T ss_pred             eeEEcc-----CCcceeeecCCCceEEEEEhhhccCC--------------------C----c-----------------
Confidence            888887     55569999999999999998644310                    0    0                 


Q ss_pred             EEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                 ...++.|..+|+++.|+|...-..+.++.|..+.+|++
T Consensus       340 -----------VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  340 -----------VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             -----------ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence                       11466899999999999865544366777999999998

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.76  E-value=3e-17  Score=160.05  Aligned_cols=194  Identities=14%  Similarity=0.231  Sum_probs=141.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE-----EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLK-----WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAS  158 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~  158 (579)
                      ..+|+++..+|.|.++|.......     ......|...|.++.|.|....|++++.|.++++||+.+++++..  +.+|
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH  143 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH  143 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence            678999999999999998764332     122357999999999999556699999999999999999988887  8999


Q ss_pred             CCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee---------------------------eEEeecCCCCEEE---E
Q 008041          159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK---------------------------MQKFSGHPGAVRF---M  205 (579)
Q Consensus       159 ~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~---l  205 (579)
                      .+.|.+++|.|... .|++|+  |.|.|||++....                           +.....|...|.+   +
T Consensus       144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV  223 (720)
T ss_pred             ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence            99999999999765 566666  8999999974320                           1112233444555   5


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCCcccc---ceeeeeee-cCc--eeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQS---ASCVLAME-HPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~---~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  279 (579)
                      .+..|...|+++|..|+.|+|||++.....-   ........ +..  .-+.++..+     ..|.+|++.+.|+.|+.|
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD-----ssGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD-----SSGTYLFASCTDNSIYFY  298 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec-----CCCCeEEEEecCCcEEEE
Confidence            5567888999998679999999999865320   00111111 111  222333333     567899888889999999


Q ss_pred             EcCCc
Q 008041          280 YGQNI  284 (579)
Q Consensus       280 d~~~~  284 (579)
                      |+.+.
T Consensus       299 nm~s~  303 (720)
T KOG0321|consen  299 NMRSL  303 (720)
T ss_pred             ecccc
Confidence            97654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.7e-16  Score=146.01  Aligned_cols=311  Identities=12%  Similarity=0.080  Sum_probs=203.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+-|+++  .||.++++||+|+.|..++||++...-...+-+    ++       .+...|....+-|+.|...      
T Consensus        56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K----PI-------~~~~~~H~SNIF~L~F~~~------  116 (609)
T KOG4227|consen   56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK----PI-------GVMEHPHRSNIFSLEFDLE------  116 (609)
T ss_pred             cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCC----Cc-------eeccCccccceEEEEEccC------
Confidence            4667666  999999999999999999999986432111100    00       0011111234556666553      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeE--eecC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGK--FRAS  158 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~--~~~~  158 (579)
                         +..+++|..+|+|...|+.+.+.+..+.. ...+.|+.+..+|-.+.|++.+.++.|.+||.+... ....  ....
T Consensus       117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence               67799999999999999999988765531 123489999999999999999999999999998654 2222  2223


Q ss_pred             CCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCee-eEE------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          159 TKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKK-MQK------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~-l~~~~--~~i~vwd~~~~~~-~~~------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ......+-|+|.... |++.+  +-+-+||.+..+. +..      ++.......+..|+|+|..|++-- ....-.+||
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D  272 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFD  272 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEee
Confidence            457888999997664 44555  7899999886532 211      121122336789999999888764 344556678


Q ss_pred             cCCCccccceeeeeeecCc------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041          229 TDGVKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      +.+...    .++...|..      ..+...+|      .+...+++|+.+=.|++|.+.....-..+.           
T Consensus       273 ~~S~R~----~V~k~D~N~~GY~N~~T~KS~~F------~~D~~v~tGSD~~~i~~WklP~~~ds~G~~-----------  331 (609)
T KOG4227|consen  273 FISQRC----FVLKSDHNPNGYCNIKTIKSMTF------IDDYTVATGSDHWGIHIWKLPRANDSYGFT-----------  331 (609)
T ss_pred             eecccc----eeEeccCCCCcceeeeeeeeeee------ecceeeeccCcccceEEEecCCCccccCcc-----------
Confidence            777543    245555433      12334455      355669999999999999865432211110           


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                  ..|....    ....-+     .+...+-.+.||..-+.++.|+|-..+| +|.+-.+.+|+|.-
T Consensus       332 ------------~IG~~~~----~~~~~~-----~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  332 ------------QIGHDEE----EMPSEI-----FIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKLWSD  386 (609)
T ss_pred             ------------ccCcchh----hCchhh-----eecceeEEEecccccccceeecCCcceE-eccchhhheecccc
Confidence                        0000000    000000     0112334677999999999999999999 88888999999964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=1.1e-16  Score=148.39  Aligned_cols=255  Identities=14%  Similarity=0.128  Sum_probs=162.5

Q ss_pred             cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--------C--------CceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041          113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------T--------GSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus       113 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      +..|...|+++.|+|+|..+++|+.+|.|.+|-..        +        ....+.+.+|...|..++|+|++.++++
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s  140 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS  140 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence            35799999999999999999999999999999755        2        2234456788899999999999999999


Q ss_pred             EC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---------------e
Q 008041          177 AA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---------------C  239 (579)
Q Consensus       177 ~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~---------------~  239 (579)
                      ++  +.+++||+..|+.+..+.+|...+..++|.|-++++++-+ .|+..+.+++...+.....               .
T Consensus       141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~  219 (434)
T KOG1009|consen  141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK  219 (434)
T ss_pred             eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence            98  8999999999999999999999999999999999999987 5887777766554322100               0


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEc----CC-----eEEEEEcCCcee-e---cccCCeeEEeeeccCC---
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TG-----VCYIWYGQNIEE-L---RNTKATKILSSSEDVN---  303 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg-----~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~---  303 (579)
                      ...+-|.....  .+|....++|+|..+++...    .|     ..++|+-...+. .   ...+.....+.+.-++   
T Consensus       220 s~rLfhDeTlk--sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el  297 (434)
T KOG1009|consen  220 STRLFHDETLK--SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL  297 (434)
T ss_pred             eeeeeecCchh--hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence            01111111111  12223345599999988743    33     335565332211 1   1111111111111000   


Q ss_pred             cccccc------cch-hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccc
Q 008041          304 SKSQKS------ATA-AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (579)
Q Consensus       304 ~~~~~~------~~~-~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~  376 (579)
                      .+....      +-. ..+.++.        ..+.+.++....+.+-....|...++.++|++||..| +-.|.|+-..+
T Consensus       298 rp~~~~~~~~~lpyrlvfaiAt~--------~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l-~vSS~DGyCS~  368 (434)
T KOG1009|consen  298 RPLSSEKFLFVLPYRLVFAIATK--------NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVL-LVSSTDGFCSL  368 (434)
T ss_pred             ccccccccccccccceEEEEeec--------ceEEEeccccccceEEEeeeeeeeecceeecCCCcEE-EEeccCCceEE
Confidence            000000      000 1111111        1223333344445555555799999999999999999 66667876644


Q ss_pred             eee
Q 008041          377 RYV  379 (579)
Q Consensus       377 w~~  379 (579)
                      -.+
T Consensus       369 vtf  371 (434)
T KOG1009|consen  369 VTF  371 (434)
T ss_pred             EEE
Confidence            433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=9e-15  Score=150.00  Aligned_cols=323  Identities=20%  Similarity=0.287  Sum_probs=216.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ...|  .++.|.+++..++.++.|+.+.+|+...+. ....+.....                 .....+.+...+    
T Consensus        65 ~~~i--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----  121 (466)
T COG2319          65 EDSI--TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALSSPD----  121 (466)
T ss_pred             cceE--EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEECCC----
Confidence            3456  555999999999999999999999998886 5555543221                 111112221000    


Q ss_pred             cccCCc-EEEEEEC-CCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec
Q 008041           82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        82 ~~~~~~-~l~~~~~-~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~  157 (579)
                          .. .++..+. ++.+.+|+... ......+ ..|...|.++.|+|++..+++++. |+.+++|++..+..+..+.+
T Consensus       122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence                22 3444344 88999999998 5554444 679999999999999998888885 99999999998889999999


Q ss_pred             CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      |...+.+++|+|++. .+++++  +.|++||...+..+. .+.+|.... ...|+|++.++++++ .|+.+++|+.....
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~  274 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS  274 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence            999999999999998 555534  899999999888887 688888775 448999998887666 79999999998776


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC--CeeEEeeeccCCcccccccc
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  311 (579)
                      ..    ......+...+....+.     |++..+++++.|+.+.+|+..+........  .....+.... +.++..   
T Consensus       275 ~~----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---  341 (466)
T COG2319         275 SL----LRTLSGHSSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS---  341 (466)
T ss_pred             cE----EEEEecCCccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence            41    11222335555666776     888888889889999999988776554332  1111111111 111101   


Q ss_pred             hhhhhc-cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecc-ccceecccceeee
Q 008041          312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQ  380 (579)
Q Consensus       312 ~~i~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s-~s~d~~~~~w~~~  380 (579)
                       .+..+ ..       ++.+.. +.............+. .+..+.+++ .... .+ ++.++.+.+|+..
T Consensus       342 -~~~~~~~~-------d~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  400 (466)
T COG2319         342 -LLVSGGSD-------DGTIRL-WDLRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLS  400 (466)
T ss_pred             -EEEEeecC-------CCcEEe-eecCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEecc
Confidence             22222 22       222222 2211121121222222 278888888 5434 44 6788999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.9e-15  Score=138.73  Aligned_cols=234  Identities=14%  Similarity=0.161  Sum_probs=172.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ....|+.|+..|..|+.|| .++|+................+....|+                             ..+
T Consensus         9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS-----------------------------SSL   58 (391)
T KOG2110|consen    9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS-----------------------------SSL   58 (391)
T ss_pred             eeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc-----------------------------cce
Confidence            3447999999999999998 4888776443311111111111111111                             455


Q ss_pred             EEEEECCCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCCee
Q 008041           89 LVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKGIS  163 (579)
Q Consensus        89 l~~~~~~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~  163 (579)
                      +++.+.+..  +++++.+.+..++.+.  ...+|.++.++.  +.++++-.+ .|+|||+++-+.+.++..   +..++.
T Consensus        59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~  133 (391)
T KOG2110|consen   59 VAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC  133 (391)
T ss_pred             eEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence            666665433  9999999998887774  456799999954  467666544 499999999998887654   444677


Q ss_pred             EEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++++++.+.+++.-+    |.|.+||+.+-+.+.++..|.+++.+++|+++|.+|++++.....|+|+.+..+++.   .
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl---~  210 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL---Y  210 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe---e
Confidence            777777788988765    899999999999999999999999999999999999999843335899999998754   2


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      .+.-+.....+..++|+     |++++|++.+..++|++|.++...
T Consensus       211 eFRRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence            23333334455667777     999999999999999999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.2e-15  Score=154.83  Aligned_cols=266  Identities=14%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc----ccccceEEeeecccccccc----
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL----SVDYTCMKWLSVDRKKKRK----   83 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~----   83 (579)
                      .||+|+++++.+. +..|+||...+|.++..+.+|..++....+.+.......    ........|.-.++...+-    
T Consensus        23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~  101 (792)
T KOG1963|consen   23 VFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN  101 (792)
T ss_pred             ccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence            6999999988777 458999999999999999999888887777655211000    1122223333211110000    


Q ss_pred             -----------------------------------c--------------------------------CCcEEEEEECCC
Q 008041           84 -----------------------------------L--------------------------------GSSLLVLGTGGG   96 (579)
Q Consensus        84 -----------------------------------~--------------------------------~~~~l~~~~~~g   96 (579)
                                                         .                                +..-+.....+.
T Consensus       102 ~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~  181 (792)
T KOG1963|consen  102 LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMC  181 (792)
T ss_pred             CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEee
Confidence                                               0                                000011111222


Q ss_pred             eEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--C--ceeeEeecCCCCeeEEEEcc
Q 008041           97 DVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--G--SLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        97 ~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--~--~~~~~~~~~~~~v~~l~~~p  169 (579)
                      .+.+|+..++..   .......|...+++.++||++++++++..||+|.+|.--.  +  .....++-|...|++++|++
T Consensus       182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~  261 (792)
T KOG1963|consen  182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS  261 (792)
T ss_pred             eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence            355555554331   1111235777889999999999999999999999996322  1  23345677888999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee----
Q 008041          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM----  243 (579)
Q Consensus       170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~----  243 (579)
                      +|.+|++|+  +.+.+|.+.+++ ..-++.-.++|..+.++||+.+..... .|+.|.+-...+.....  .+..+    
T Consensus       262 ~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~~~  337 (792)
T KOG1963|consen  262 DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKPPT  337 (792)
T ss_pred             CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccCCC
Confidence            999999999  899999999987 344567789999999999999877776 79999998875543221  01011    


Q ss_pred             ----ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          244 ----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       244 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                          .........+.++     |..+.++-.+..|+|.+||+.+.+.+
T Consensus       338 ~~~k~~~~~l~t~~~id-----pr~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSID-----PRTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             ccccccccccceeEEEc-----CCCCceeecCCCceEEEEecccccee
Confidence                0122334445555     65566666777788888887665554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.1e-17  Score=157.99  Aligned_cols=241  Identities=15%  Similarity=0.146  Sum_probs=180.2

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCC--------CeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK--------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      -||++  +|.|....|++|+.||+|++|+++.        -+.+.+|.+|.+++.++++...                  
T Consensus       296 ~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------------  355 (577)
T KOG0642|consen  296 CIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------------  355 (577)
T ss_pred             hhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC------------------
Confidence            46666  8999999999999999999999932        2467888999988888777766                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                               +..+++|+.||.|+.|++..+         ..+...+.||++.|+.+++++....|++|+.||+|+.|+..
T Consensus       356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence                     778999999999999966532         12344557999999999999999999999999999999987


Q ss_pred             CCceeeEeecCC--CCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEE
Q 008041          148 TGSLLGKFRAST--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       148 ~~~~~~~~~~~~--~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~  215 (579)
                      .... .+|....  +...++++-.....+..++   +.-.+++......+..+...       ...+..+.++|.+.+.+
T Consensus       427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~  505 (577)
T KOG0642|consen  427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF  505 (577)
T ss_pred             CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence            6655 4444332  3456666654433333333   33344455545444444321       23467788899998888


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      ++. .|+.|+++|..+++..     .....+...+++.++.     |+|-+|++++.||.+.+|.+.....
T Consensus       506 ~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  506 TAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             ecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhe
Confidence            775 8999999999988744     4455666677788887     9999999999999999998765443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=4.1e-16  Score=143.85  Aligned_cols=207  Identities=17%  Similarity=0.227  Sum_probs=160.8

Q ss_pred             cccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCCCCCEEEEEEccCC-CEE
Q 008041           60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATHG-SCI  132 (579)
Q Consensus        60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h~~~V~~l~~~~~~-~~l  132 (579)
                      .+||.. .+-.+.|.|.+        ...|++|+.|.+|.||.+..+...      ...+.+|...|--+.|+|.- +.|
T Consensus        77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL  147 (472)
T KOG0303|consen   77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL  147 (472)
T ss_pred             ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence            346643 55678898886        778999999999999999876432      23347899999999999954 568


Q ss_pred             EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEec
Q 008041          133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSD  209 (579)
Q Consensus       133 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~  209 (579)
                      ++++.|.+|.+||+.+|+.+.++. |.+.|+++.|+.||.++++++  ..|+|||.++++.+..-.+|.+. -..+.|-.
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence            999999999999999999888888 999999999999999999998  89999999999999888888753 34567778


Q ss_pred             CCCEEEEEec---CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCce
Q 008041          210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       210 ~~~~l~s~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  285 (579)
                      +|. ++++|.   .++.+-+||...-...  .....++..+ -+-.-+++     +|...+..++ .|+.|+.|.+.+-.
T Consensus       227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSn-Gvl~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSN-GVLLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCC-ceEEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence            887 555543   4678999998776543  1233343333 33345555     7877776555 59999999977654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=1.7e-14  Score=147.96  Aligned_cols=322  Identities=20%  Similarity=0.303  Sum_probs=216.0

Q ss_pred             cccceEEEEccCCC-EEEEEeC-CCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~l~~~fspdg~-~lasg~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+..+... ++++. +++..+. |+.+.+|+... ......+..|...+..+.|++.                       
T Consensus       111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  166 (466)
T COG2319         111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-----------------------  166 (466)
T ss_pred             ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence            45455444 88888 5555455 99999999988 7777777777666655555554                       


Q ss_pred             cccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceee-EeecC
Q 008041           82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~-~~~~~  158 (579)
                          +..++.++. ++.+++|+...+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+.... .+..|
T Consensus       167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence                456777775 999999999987776555 56999999999999998 56666899999999998888887 68888


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .... ...|+|++..+++++  +.+++|+...... +..+.+|...+.++.|+|++..+++++ .|+.+.+|+.......
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~  319 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL  319 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence            7765 448999998888776  8999999987664 445568899999999999888888866 6788999988876533


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      .  ......+.. .+..+.+.     +++..++.+ ..|+.+.+|+............... ..... +.+. .    .+
T Consensus       320 ~--~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~----~~  384 (466)
T COG2319         320 S--SLTLKGHEG-PVSSLSFS-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS-FSPD-G----RV  384 (466)
T ss_pred             E--EeeecccCC-ceEEEEEC-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEE-ECCC-C----CE
Confidence            1  111112333 33334334     444555555 6789999999887762222211111 11111 1111 1    11


Q ss_pred             hh-ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          315 FA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       315 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      .. +..++       .+.+.. ............+...+....+++++..+ ++++.+.+++.|++..
T Consensus       385 ~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  443 (466)
T COG2319         385 VSSGSTDG-------TVRLWD-LSTGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEecCCC-------ceEEEe-cccCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEeccC
Confidence            11 22222       222221 11111222222221578889999999999 7788899999998853

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=156.27  Aligned_cols=259  Identities=11%  Similarity=0.081  Sum_probs=174.9

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      .+.+||+..|.....+ ++|.+.|.+++|+.||+.|++|+.|+.|.+|+-.- +-+-. ..|.+.|.|+.|+|-...+++
T Consensus        34 rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~Las  110 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLAS  110 (1081)
T ss_pred             EEEEEeCCCccccccc-ccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee-eccCCeeeEeecCchHHHhhh
Confidence            3445555555444333 68999999999999999999999999999998532 11222 248899999999999999999


Q ss_pred             EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041          177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       177 ~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                      ++ +..-+|........ +. .....+.+.+|..||++++.|- .||+|.+-+-......   .+...+.++..+-.++|
T Consensus       111 CsLsdFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~-~nGTIsiRNk~gEek~---~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  111 CSLSDFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGM-FNGTISIRNKNGEEKV---KIERPGGSNSPIWSICW  184 (1081)
T ss_pred             cchhhccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEec-cCceEEeecCCCCcce---EEeCCCCCCCCceEEEe
Confidence            99 89999987654332 11 1345688899999999999876 7999998865444322   33344455666666777


Q ss_pred             cCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeC
Q 008041          256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG  335 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g  335 (579)
                      ++..-......+++.....++.+|.+. |+.+...+.......|.. +.+++.    +++.|+.++....+     ...|
T Consensus       185 ~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis-Yf~NGE----y~LiGGsdk~L~~f-----TR~G  253 (1081)
T KOG1538|consen  185 NPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS-YFTNGE----YILLGGSDKQLSLF-----TRDG  253 (1081)
T ss_pred             cCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe-eccCCc----EEEEccCCCceEEE-----eecC
Confidence            633211223578888888899888764 444443222222222222 344455    77777776633222     2222


Q ss_pred             CCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          336 LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       336 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .    .+.++.....+++.++..|+|+.. +-|..||++--+++.
T Consensus       254 v----rLGTvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  254 V----RLGTVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNLI  293 (1081)
T ss_pred             e----EEeeccccceeEEEEEEccCCceE-EEEEccCeeehhhhH
Confidence            2    222444456689999999999999 888889999887763

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.7e-15  Score=131.09  Aligned_cols=227  Identities=13%  Similarity=0.190  Sum_probs=161.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe----------EEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .+-++||.++||+.|+.+|.|-++.+.+-.          .+..++.|..++..+.|..                     
T Consensus        14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---------------------   72 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---------------------   72 (325)
T ss_pred             HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---------------------
Confidence            344789999999999999999999876421          2233344544444433332                     


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeE------EEEe-cCCCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRL-SDCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~-~~~h~-----~~V~~l~~~~~~~~l~s~~~d~~v~iwd~  146 (579)
                              . ++..+.||.|+-|..+....      .++. ...|.     -.|+++...|..+.++.++.|+.++.||+
T Consensus        73 --------~-~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl  143 (325)
T KOG0649|consen   73 --------D-FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL  143 (325)
T ss_pred             --------h-heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence                    2 45555669999998765322      1111 12233     35889999998888888889999999999


Q ss_pred             CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----------CCEEEEEEecCCCEE
Q 008041          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----------GAVRFMTFSDNGKYV  214 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~----------~~v~~l~~s~~~~~l  214 (579)
                      ++|+..+++++|.+.|.++.--.....+++|+  |++++||+++++.+..+....          ..|.+++.  +..++
T Consensus       144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl  221 (325)
T KOG0649|consen  144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL  221 (325)
T ss_pred             cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence            99999999999999999999855566777887  999999999999988774322          22445554  45688


Q ss_pred             EEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       215 ~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ++++  ...+.+|.++..+..   +++.+..+..  . +.|       +...++++++.+++.-|.+.
T Consensus       222 vCGg--Gp~lslwhLrsse~t---~vfpipa~v~--~-v~F-------~~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  222 VCGG--GPKLSLWHLRSSEST---CVFPIPARVH--L-VDF-------VDDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EecC--CCceeEEeccCCCce---EEEeccccee--E-eee-------ecceEEEeccccceeeeeec
Confidence            8764  578999999998754   6666554433  2 333       23667888888888888653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=7.6e-16  Score=156.07  Aligned_cols=250  Identities=12%  Similarity=0.119  Sum_probs=179.9

Q ss_pred             CCcccceEEEEccC-CCEEEEEeCCCcEEEEECCCCeEE--EEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .|++|+|. ..++|.|..+|+|.+||+..+...  ..+..              .......+++.+.|..... 
T Consensus       242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------~~~sh~~~v~~vvW~~~~~-  304 (555)
T KOG1587|consen  242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------LEVSHSEPVTAVVWLQNEH-  304 (555)
T ss_pred             CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--------------ccccCCcCeEEEEEeccCC-
Confidence            4667  67799995 567788889999999999876652  11110              1122245777888887432 


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-----cC------CCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-----SD------CHPGGVSAISFATH-GSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-----~~------~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~  147 (579)
                            +.-+++++.||.|..|+++.-......     ..      .....++++.|.+. -..|+.|+..|.|.--+-.
T Consensus       305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence                  345888999999999988753321110     00      12346899999984 4559999999998874432


Q ss_pred             CC--------ceeeEeecCCCCeeEEEEccCCC-EEEEEC-CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041          148 TG--------SLLGKFRASTKGISCMAVSSDGK-MLATAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       148 ~~--------~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~-~~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                      ..        +....+..|.++|+++.++|=+. .+++++ .++++|... ...++..+..+...|++++|||...-++.
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence            21        12335566888999999999654 444444 899999988 66777778888888999999999877777


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      +...||.|.+||+......   .+.+..-.......+.++     +.|+.|++|+..|++++|++..
T Consensus       459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCc
Confidence            7778999999999887654   333333336667777787     8899999999999999999853

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=9.1e-15  Score=144.82  Aligned_cols=188  Identities=18%  Similarity=0.257  Sum_probs=124.1

Q ss_pred             CcEEEEEE-CCCeEEEEEcc-CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cc---eeeEee
Q 008041           86 SSLLVLGT-GGGDVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GS---LLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~-~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~-~~---~~~~~~  156 (579)
                      +++|++++ .++.|.+|++. ++..  ....  ...+....+.|+|+|+++++++ .++.|.+|++.+ +.   .+..+.
T Consensus        46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~  123 (330)
T PRK11028         46 KRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE  123 (330)
T ss_pred             CCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence            56666654 46779999997 3433  2222  2334567899999999988876 488999999864 32   222232


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE-------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~-------~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                       +...+.+++++|+|+++++++   +.|.+||+.+...+.       .... ......+.|+|+|++++++...++.|.+
T Consensus       124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v  201 (330)
T PRK11028        124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDV  201 (330)
T ss_pred             -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEE
Confidence             223567889999999997766   799999998643221       1111 2345789999999999888756899999


Q ss_pred             EEcCCCccccceeeeeeec-C-----ceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCC
Q 008041          227 WRTDGVKKQSASCVLAMEH-P-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  283 (579)
                      |++...... ...+..+.. +     ......+.++     |++++++++.. ++.|.+|+++.
T Consensus       202 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        202 WQLKDPHGE-IECVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEEeCCCCC-EEEEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence            999743111 112222211 0     1111234455     99999999865 78999998754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.1e-16  Score=142.19  Aligned_cols=190  Identities=12%  Similarity=0.201  Sum_probs=144.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      ..+|++-..|.|++||..+|+.+.+|+++...++...|...                  +       ....+.+|+.||.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------d-------s~h~v~s~ssDG~   95 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------D-------SPHGVISCSSDGT   95 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------C-------CCCeeEEeccCCe
Confidence            35888888999999999999999999988877776655432                  1       1567899999999


Q ss_pred             EEEEEccCCeEEEEec-CCCC-CCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCce-eeE-eecCCCCeeEEEEcc
Q 008041           98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS  169 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~-~~h~-~~V~~l~~~~~~~~l~s~~----~d~~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~~p  169 (579)
                      |++||++......++. .+|. .+-.+++.+.+++.+++|.    .|-.|.+||++..+. +.. +..|...|+++.|+|
T Consensus        96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen   96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence            9999999876554443 3344 4667777776777787775    567899999998766 444 567999999999999


Q ss_pred             C-CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCc
Q 008041          170 D-GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       170 ~-g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      . -++|++|+  |-|.+||+.....   +...-.|...|..+.|..++ +.+.+-+ ...+..+|++..+.
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~  245 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS  245 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence            5 46888888  9999999976422   22223477789999999877 2355555 68889999987664

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.71  E-value=7e-16  Score=136.86  Aligned_cols=207  Identities=15%  Similarity=0.235  Sum_probs=151.8

Q ss_pred             cccceEEEEccCC-----CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            5 NIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         5 ~V~~l~~~fspdg-----~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      |++.+  -|.|+.     ++||+++ | .+|+|.+.........+.        ..+.. ...+...+.|+..|+..+  
T Consensus        98 P~tK~--~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~--------~L~~~-kns~~~aPlTSFDWne~d--  162 (364)
T KOG0290|consen   98 PVTKL--MWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQS--------VLNNN-KNSEFCAPLTSFDWNEVD--  162 (364)
T ss_pred             Cccce--EecCCccccCcchhhccc-C-eEEEEeccCcCCceehhh--------hhccC-cccccCCcccccccccCC--
Confidence            55444  899976     3677766 3 799999874322111110        01111 235556788999999887  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                            .++|.+++-|-+..|||+.++..  +.+-+-+|...|.+++|...+. .|++++.||.|++||++.-+.-..+.
T Consensus       163 ------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY  236 (364)
T KOG0290|consen  163 ------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY  236 (364)
T ss_pred             ------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence                  67899999999999999999733  3344468999999999998654 58999999999999998765433332


Q ss_pred             c---CCCCeeEEEEccCC-CEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEE
Q 008041          157 A---STKGISCMAVSSDG-KMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALW  227 (579)
Q Consensus       157 ~---~~~~v~~l~~~p~g-~~l~~~~---~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vw  227 (579)
                      .   ...+...++|++.. +++|+-.   ..|.+.|++.. ..+..+.+|.+.|+.|+|.|... .+.++| +|..+-+|
T Consensus       237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliW  315 (364)
T KOG0290|consen  237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIW  315 (364)
T ss_pred             cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEE
Confidence            2   23478889999854 4555543   78999999964 56889999999999999999754 677776 79999999


Q ss_pred             EcCCCc
Q 008041          228 RTDGVK  233 (579)
Q Consensus       228 d~~~~~  233 (579)
                      |+...-
T Consensus       316 Dl~q~~  321 (364)
T KOG0290|consen  316 DLQQMP  321 (364)
T ss_pred             eccccc
Confidence            998754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=5.7e-16  Score=150.07  Aligned_cols=225  Identities=12%  Similarity=0.131  Sum_probs=170.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc--------------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS--------------  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~--------------  150 (579)
                      +..|++|+.||+|+||.+.+|.+++++.  ..+.|.|++|+|.+.. ++.+.....+.+.+..-|.              
T Consensus       412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~  489 (733)
T KOG0650|consen  412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA  489 (733)
T ss_pred             cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence            8899999999999999999999998874  5578999999997765 3333333334444432110              


Q ss_pred             -----------------------eeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCE
Q 008041          151 -----------------------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAV  202 (579)
Q Consensus       151 -----------------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v  202 (579)
                                             -++..-.|...|..+.|+..|.+|++..     ..|.|+++...+...-|....+.|
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v  569 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV  569 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence                                   0122224677899999999999999976     489999998777666676667889


Q ss_pred             EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       203 ~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      .++.|+|...+|++++  .+.|++||+......     ..+......++.+...     |.|..|+.++.|+.+..||++
T Consensus       570 q~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv-----KkL~tg~kwiS~msih-----p~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  570 QRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV-----KKLLTGSKWISSMSIH-----PNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             eEEEecCCCceEEEEe--ccceEEEehhHHHHH-----HHHhcCCeeeeeeeec-----CCCCeEEEecCCCeeEEEEcc
Confidence            9999999999999875  578999999886432     3444556667777776     999999999999999999975


Q ss_pred             CceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc
Q 008041          283 NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV  362 (579)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~  362 (579)
                      -...                   .                                   .+++..|...+.+++|++.=.
T Consensus       638 lssk-------------------P-----------------------------------yk~lr~H~~avr~Va~H~ryP  663 (733)
T KOG0650|consen  638 LSSK-------------------P-----------------------------------YKTLRLHEKAVRSVAFHKRYP  663 (733)
T ss_pred             cCcc-------------------h-----------------------------------hHHhhhhhhhhhhhhhccccc
Confidence            3211                   0                                   114556888888899988888


Q ss_pred             eeeccccceecccceee
Q 008041          363 LLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       363 ~l~~s~s~d~~~~~w~~  379 (579)
                      ++ +|||.|+++.+...
T Consensus       664 Lf-as~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  664 LF-ASGSDDGTVIVFHG  679 (733)
T ss_pred             ee-eeecCCCcEEEEee
Confidence            88 99999899877753

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=6.1e-16  Score=147.90  Aligned_cols=176  Identities=16%  Similarity=0.307  Sum_probs=144.4

Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +...++++++||.+.+.+-. ++.. +...+|.+.|.+-.|+|||.-+++++.||.|++|. ++|-...++.....+|+|
T Consensus        74 ~~d~~~i~s~DGkf~il~k~-~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c  150 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNKS-ARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC  150 (737)
T ss_pred             CcceEEEEcCCceEEEeccc-chhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence            47789999999999988743 3332 33478999999999999999999999999999999 677766666666779999


Q ss_pred             EEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041          165 MAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       165 l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      ++|.|+.+.++.+. +.+.+=.+.....+-....|.+-|.++.|++.+..++++| +|-..++||-....      .+..
T Consensus       151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~------Lf~S  223 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN------LFTS  223 (737)
T ss_pred             EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc------cccC
Confidence            99999887666665 8888888887777778899999999999999999999988 89999999977653      4566


Q ss_pred             ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  277 (579)
                      ..++..+..++|.     |+ ..++.++. ++++
T Consensus       224 ~~~ey~ITSva~n-----pd-~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  224 AAEEYAITSVAFN-----PE-KDYLLWSY-NTAR  250 (737)
T ss_pred             Chhccceeeeeec-----cc-cceeeeee-eeee
Confidence            6778889999998     88 55566654 3444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.68  E-value=2.9e-15  Score=132.84  Aligned_cols=200  Identities=14%  Similarity=0.210  Sum_probs=151.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      -|+.|.|++..+|+-. |..|.+|+++++.. +.++.......             .....+.-.|.|..        ..
T Consensus       127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------~~~~ftsg~WspHH--------dg  184 (370)
T KOG1007|consen  127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------MRHSFTSGAWSPHH--------DG  184 (370)
T ss_pred             eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-------------ccceecccccCCCC--------cc
Confidence            4559999999998877 88999999998876 44443222111             11234455676643        22


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCC-CceeeEeecCCCCeeEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLT-GSLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~l  165 (579)
                      .-+..+.++++..||+++.+....+..+|...|..+.|+|+.++ |++|+.||.|++||.+. ..++..+.+|...|.++
T Consensus       185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V  264 (370)
T KOG1007|consen  185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV  264 (370)
T ss_pred             ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence            34666788999999999998888888899999999999998876 88999999999999885 46788899999999999


Q ss_pred             EEccCC-CEEEEEC--CeEEEEECCCC-----------------------------eeeEEeecCCCCEEEEEEecCCCE
Q 008041          166 AVSSDG-KMLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       166 ~~~p~g-~~l~~~~--~~i~vwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~s~~~~~  213 (579)
                      .|+|.- +++++|+  ..|.+|...+-                             ..+.++..|...|.+++|+.-..+
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW  344 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW  344 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence            999954 4555665  57777754211                             124467789999999999988887


Q ss_pred             EEEEecCCCeEEEEEcC
Q 008041          214 VLSSAVGERYIALWRTD  230 (579)
Q Consensus       214 l~s~~~~d~~i~vwd~~  230 (579)
                      ++++-+.||.+.|=.+.
T Consensus       345 iFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  345 IFASLSYDGRVIISSVP  361 (370)
T ss_pred             eEEEeccCceEEeecCC
Confidence            76666689998875544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=4.3e-14  Score=139.98  Aligned_cols=238  Identities=10%  Similarity=0.052  Sum_probs=150.1

Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEECC-CCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg~~lasg~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++++||+++|++++ .++.|.+|++. ++.... ......                ......+.+.+.         ++
T Consensus        39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~-~~~~~~----------------~~~p~~i~~~~~---------g~   92 (330)
T PRK11028         39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF-AAESPL----------------PGSPTHISTDHQ---------GR   92 (330)
T ss_pred             cEEECCCCCEEEEEECCCCcEEEEEECCCCceEE-eeeecC----------------CCCceEEEECCC---------CC
Confidence            348999999987765 47889999986 344321 110000                001122333332         55


Q ss_pred             EEEEEE-CCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-----Eee
Q 008041           88 LLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----KFR  156 (579)
Q Consensus        88 ~l~~~~-~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~-----~~~  156 (579)
                      .+++++ .++.|.+|++.+..    .+..+  .+.....+++|+|+|+++++++ .++.|.+||+.+...+.     ...
T Consensus        93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~  170 (330)
T PRK11028         93 FLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT  170 (330)
T ss_pred             EEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence            666655 47889999997432    22111  2334567889999999986555 56999999997633221     111


Q ss_pred             -cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC--C--eeeEEeecCC------CCEEEEEEecCCCEEEEEecCCC
Q 008041          157 -ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD--H--KKMQKFSGHP------GAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       157 -~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~--~--~~~~~~~~h~------~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                       ........++|+|+|++++++.   +.|.+|+++.  +  +.+.++..+.      .....+.|+|++++++++...++
T Consensus       171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~  250 (330)
T PRK11028        171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS  250 (330)
T ss_pred             cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence             1233567899999999998876   8999999973  3  2333333221      12346889999999998865688


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ  282 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  282 (579)
                      .|.+|++...... ...+..... ......+.++     |+|++|++++. +++|.+|+++
T Consensus       251 ~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        251 LISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEEEEEeCCCCe-EEEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence            9999999654321 011111111 1122344565     99999998876 8999999764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.68  E-value=1e-14  Score=152.39  Aligned_cols=255  Identities=14%  Similarity=0.165  Sum_probs=160.5

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.|..+  +.++ ++.+|++||.||+|+|||.+.-....     ...-....|++.      +..+.++....      
T Consensus      1048 s~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~~------~sr~~~vt~~~------ 1108 (1431)
T KOG1240|consen 1048 SSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSPE------GSRVEKVTMCG------ 1108 (1431)
T ss_pred             cccccce--eecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEecc------CCceEEEEecc------
Confidence            4556444  5555 55999999999999999986321100     000011122211      12222222222      


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCC-CCCEEEE-EEcc-CCC-EEEEEeCCCcEEEEeCCCCce
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCH-PGGVSAI-SFAT-HGS-CIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h-~~~V~~l-~~~~-~~~-~l~s~~~d~~v~iwd~~~~~~  151 (579)
                         .++.+++++.||.|.+.++...+..      .+....+ .+.+.++ +|.. .+. .++.+...+.|..||++....
T Consensus      1109 ---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1109 ---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             ---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence               2778999999999999998762211      1111222 2334333 3333 233 677888889999999987765


Q ss_pred             eeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecC---CCEEEEEec-CCC
Q 008041          152 LGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-GER  222 (579)
Q Consensus       152 ~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~---~~~l~s~~~-~d~  222 (579)
                      ....+.  ..+.|++++.+|.+.++++|.  |.+.+||++=+.++.... ++..+++.+..+|-   ....+++++ ..+
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence            555443  346899999999999999998  999999999888776653 45578888877764   346666665 578


Q ss_pred             eEEEEEcCCCccccceeeeeee---------cCc--------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          223 YIALWRTDGVKKQSASCVLAME---------HPA--------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      .|.+|++.++....   ++-..         .+.        .......+.     ..+.++.+|+.|..|+.||....+
T Consensus      1266 evs~wn~~~g~~~~---vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQT---VLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             ceeeeecccCcceE---EEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCcc
Confidence            89999999885331   11111         000        011111221     345788999999999999977654


Q ss_pred             ee
Q 008041          286 EL  287 (579)
Q Consensus       286 ~~  287 (579)
                      ..
T Consensus      1338 ~s 1339 (1431)
T KOG1240|consen 1338 IS 1339 (1431)
T ss_pred             cc
Confidence            43

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.2e-14  Score=124.22  Aligned_cols=242  Identities=16%  Similarity=0.219  Sum_probs=156.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccc-cccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS-VDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~   80 (579)
                      +.+||+.+  +|.  ..+|.+|+ ||.|+=|.+.........+..    ..  .-++...+... ..+..+ |..+.   
T Consensus        61 hdgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l----we--~~~P~~~~~~evPeINam-~ldP~---  125 (325)
T KOG0649|consen   61 HDGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL----WE--VKIPMQVDAVEVPEINAM-WLDPS---  125 (325)
T ss_pred             cCCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhh----hh--hcCccccCcccCCcccee-EeccC---
Confidence            56888555  887  45777777 699999998754331111100    00  00000001111 112222 22222   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-  159 (579)
                           .+.++++..|+.++-||+.+|+....+ ++|++-|.++.-......+++|+.||++++||++++++++.+...+ 
T Consensus       126 -----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~  199 (325)
T KOG0649|consen  126 -----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN  199 (325)
T ss_pred             -----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC
Confidence                 444666669999999999999988666 8999999999985556679999999999999999999988865422 


Q ss_pred             ---------CCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          160 ---------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       160 ---------~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                               ..|.+++.+  ...+++|+ ..+.+|.+++.++...|+ -..++..+.|..|  .++++| ..+.|.-|.+
T Consensus       200 ~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l  273 (325)
T KOG0649|consen  200 PNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTL  273 (325)
T ss_pred             hhhcCcccCceeEEEecc--CceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeee
Confidence                     256666654  56899988 589999999998888876 5677888888754  566666 5778999988


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      ...-.    ......++.-  ....++   .+| -++|-.++..++++|+.
T Consensus       274 ~Gvl~----a~ip~~s~~c--~s~s~~---~~p-~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  274 NGVLQ----ANIPVESTAC--YSASWQ---TSP-IKFISIAGFSNKLHILK  314 (325)
T ss_pred             ccEEE----EeccCCccce--eeeccc---CCc-eEEEEecccceeeeeee
Confidence            76321    1112222221  112222   013 35566667777888773

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.67  E-value=2.5e-15  Score=135.34  Aligned_cols=226  Identities=13%  Similarity=0.212  Sum_probs=159.7

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      .|+..++|+.+.|.-|++||..+|+....+..-.....             -...-++.|.+.         +..|+ ++
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------Geqlf-aG  176 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLF-AG  176 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEe-ec
Confidence            37888999999999999999999998877753221000             011223444443         44454 45


Q ss_pred             CCCeEEEEEc-cCCeEE--EE-e---cCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           94 GGGDVLALAV-SAGQLK--WR-L---SDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        94 ~~g~i~iwd~-~~~~~~--~~-~---~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ....|++||+ +.|...  .. +   ..+..+-+.+++|+|-. ..++.++...++-+|.-..+.++..+.+|.+.|+.+
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL  256 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence            5678999999 444321  11 1   12346678999999954 478899988888888877889999999999999999


Q ss_pred             EEccCCCEEEEEC---CeEEEEECCC-CeeeEEeecCCC-CEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          166 AVSSDGKMLATAA---GQLKTFNCSD-HKKMQKFSGHPG-AVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       166 ~~~p~g~~l~~~~---~~i~vwd~~~-~~~~~~~~~h~~-~v~~l~~--s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|.++|+.|.+|.   -.|..||++. +..+..+.+|.. .-..|.|  .|++++|++++ .||.|++||+......   
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~---  332 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNE---  332 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCc---
Confidence            9999999999998   5899999986 455677777765 3344555  58899999886 7999999999883321   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                       +.........+..+.+.     |-=..+++++.
T Consensus       333 -~sv~~~~sd~vNgvsln-----P~mpilatssG  360 (406)
T KOG2919|consen  333 -VSVTGNYSDTVNGVSLN-----PIMPILATSSG  360 (406)
T ss_pred             -ccccccccccccceecC-----cccceeeeccC
Confidence             12333444455555555     65445555443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.1e-15  Score=142.76  Aligned_cols=195  Identities=21%  Similarity=0.177  Sum_probs=154.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|++||..|++|+.||++|||++.+...+..+..|...+.++.|+++                           +.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~  200 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKF  200 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcE
Confidence            34599999999999999999999999988888888889999999999988                           888


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCC---CE--EEEEeCCCcEEEEeCCCCce-----eeEeec
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---SC--IYSAGADGMVCEIDPLTGSL-----LGKFRA  157 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~---~~--l~s~~~d~~v~iwd~~~~~~-----~~~~~~  157 (579)
                      |++-+.+ ..+||+..++..+.+.. .........+.|+.|+   .+  ++....-+.|+.||+...+-     .++...
T Consensus       201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~  279 (398)
T KOG0771|consen  201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK  279 (398)
T ss_pred             EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence            8998888 99999999997665543 3344456778888877   33  33334556777777643221     111112


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ....|++++++++|++++.|+  |.|-+++..+.+.+.-. +.|...|+.+.|+||.+++++.+ .|....+..+...
T Consensus       280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~vd  356 (398)
T KOG0771|consen  280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAVD  356 (398)
T ss_pred             ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEeec
Confidence            234899999999999999999  99999999988876655 57999999999999999999987 5888888877653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.67  E-value=4.1e-16  Score=156.38  Aligned_cols=240  Identities=15%  Similarity=0.165  Sum_probs=178.6

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|  .|+.|...|.++++|+.|..++||...++.+.....||.+.+...+.+..                         
T Consensus       191 naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-------------------------  243 (1113)
T KOG0644|consen  191 NAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-------------------------  243 (1113)
T ss_pred             hhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-------------------------
Confidence            457  67799999999999999999999999999999999999888876666544                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------C
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------------G  149 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--------------~  149 (579)
                        +.++++++.|..|++|.+.++..+.. +.+|++.|++++|+|-.    +.+.||++++||.+-              +
T Consensus       244 --n~~iaaaS~D~vIrvWrl~~~~pvsv-LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~  316 (1113)
T KOG0644|consen  244 --NTMIAAASNDKVIRVWRLPDGAPVSV-LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK  316 (1113)
T ss_pred             --hhhhhhcccCceEEEEecCCCchHHH-HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc
Confidence              67789999999999999999998744 47899999999999954    778999999999761              0


Q ss_pred             ceeeEee----------------cCCCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCC
Q 008041          150 SLLGKFR----------------ASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPG  200 (579)
Q Consensus       150 ~~~~~~~----------------~~~~~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~  200 (579)
                      ..+..+.                .....+-+++|...+-.+++..             ..+.+|++.+|.....+.+|..
T Consensus       317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence            1111100                0011222333333333333322             3678999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      .+..+.++|-+..++-....||...|||+-.+...   .++..+ +...+. ..|+     +||..++....-|.++|+.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d-~kFS-----qdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVD-GKFS-----QDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeec-cccC-----CCCceEecCCCCCceEEec
Confidence            99999999976655444448999999999988654   233333 333333 3344     8999999999999999998


Q ss_pred             cCCceee
Q 008041          281 GQNIEEL  287 (579)
Q Consensus       281 ~~~~~~~  287 (579)
                      ...++..
T Consensus       467 ~gqs~s~  473 (1113)
T KOG0644|consen  467 TGQSKSQ  473 (1113)
T ss_pred             cCCCccc
Confidence            6555443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=1.2e-15  Score=148.64  Aligned_cols=238  Identities=15%  Similarity=0.183  Sum_probs=166.4

Q ss_pred             EccCCCEEEE--EeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           13 FSPALDYFAI--CSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        13 fspdg~~las--g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      |..+..+.|.  .+.-|.|-||++.. |++-..       +...        -.-...++.+.|.|++        ...+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDg-------v~p~--------l~Ngt~vtDl~WdPFD--------~~rL  643 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG-------VMPG--------LFNGTLVTDLHWDPFD--------DERL  643 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcc-------cccc--------cccCceeeecccCCCC--------hHHe
Confidence            4455555553  34568899999864 222110       0000        1114467889999998        5679


Q ss_pred             EEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           90 VLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      ++++.||.|++|.+..+..      ....+..|...|+++.|+| -...+++++.|.+|++||+++++....+.+|.+.|
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI  723 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence            9999999999999986543      2234568999999999999 44578999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCC-CCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCcc
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHP-GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK  234 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d----~~i~vwd~~~~~~  234 (579)
                      ..++|+|+|+.+++.+  |+|++|..++++. +.+-.+.. ..-..|.|.-||+++++.|. |    +.|.+||.++-..
T Consensus       724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~  802 (1012)
T KOG1445|consen  724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDL  802 (1012)
T ss_pred             eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccC
Confidence            9999999999999998  9999999987643 33332221 22245788889999988874 4    4688888776542


Q ss_pred             ccceeeeeeecCcee-EEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcC
Q 008041          235 QSASCVLAMEHPAVF-MDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQ  282 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~  282 (579)
                      .   .+.+..-.... .-.-.++     +|.. .+++|-.|..|+.|.+-
T Consensus       803 ~---pl~t~~lDvaps~LvP~YD-----~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  803 R---PLYTQVLDVAPSPLVPHYD-----YDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             C---cceeeeecccCcccccccc-----CCCceEEEecCCCceEEEEEec
Confidence            2   22222111111 1111222     4544 56677779999999754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=4.5e-16  Score=150.07  Aligned_cols=246  Identities=17%  Similarity=0.183  Sum_probs=166.8

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEE
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT  183 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~v  183 (579)
                      ..|.+.|+.+.|+|....|++|+.||++++|+++.        -+++.+|++|.++|.|+++.+++..+.+|+  |+|+.
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            56889999999999999999999999999999932        257889999999999999999999999999  99999


Q ss_pred             EECCCC----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041          184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       184 wd~~~~----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                      |++...          .....+.||...|..+++|+....|++++ .||+++.|+......    +++...........+
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence            965421          23456789999999999999988899987 699999999877653    223322222222223


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee---e---ccCCcccccccchhhhhccccceecCCc
Q 008041          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---S---EDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~  327 (579)
                      .+..    ....+.++...-|.-.+++.+.+..+..+........   .   ..+..+..    +..+++..+..++.++
T Consensus       446 d~~s----s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  446 DRTS----SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITFTAHEDRSIRFFD  517 (577)
T ss_pred             eecc----chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeEecccCCceeccc
Confidence            3320    1112223322234444445544444433322111100   0   00011111    2455555555555543


Q ss_pred             eEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                              .........+..|...+.++++.|+|-+| +++++|+++++|.+..
T Consensus       518 --------n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  518 --------NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDV  562 (577)
T ss_pred             --------ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccc
Confidence                    22333334566788899999999999999 9999999999998853

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=3.4e-15  Score=130.77  Aligned_cols=229  Identities=11%  Similarity=0.090  Sum_probs=161.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-----------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-----------  154 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-----------  154 (579)
                      +..++.|+..|.|++|++++......+...|...|+.+.--|+ ..+.+-+.|+.+.+|++..+..+..           
T Consensus        25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC  103 (323)
T KOG0322|consen   25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC  103 (323)
T ss_pred             chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence            4558999999999999999988765554367889999999887 4677888999999999865321110           


Q ss_pred             ---ee---------------------------------------cCCCCeeEEEEcc-CCC-EEEEEC---CeEEEEECC
Q 008041          155 ---FR---------------------------------------ASTKGISCMAVSS-DGK-MLATAA---GQLKTFNCS  187 (579)
Q Consensus       155 ---~~---------------------------------------~~~~~v~~l~~~p-~g~-~l~~~~---~~i~vwd~~  187 (579)
                         +.                                       +..+.+.|..+.. +++ .++.++   |.+.+||+.
T Consensus       104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S  183 (323)
T KOG0322|consen  104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS  183 (323)
T ss_pred             cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence               00                                       0113444544332 233 334444   899999999


Q ss_pred             CCeee----------EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-cceeeeeeecCceeEEeEEec
Q 008041          188 DHKKM----------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCID  256 (579)
Q Consensus       188 ~~~~~----------~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  256 (579)
                      ++..+          .....|..+|.++.|.+....=+++| .+..+.+|++...... .......+.++.  +..+.+.
T Consensus       184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpG--v~gvrIR  260 (323)
T KOG0322|consen  184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPG--VSGVRIR  260 (323)
T ss_pred             CCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCC--ccceEEc
Confidence            97433          33357899999999987655446666 5777899988754211 111222333332  2334444


Q ss_pred             CCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCC
Q 008041          257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL  336 (579)
Q Consensus       257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~  336 (579)
                           ||++.+|+++.||+|+||+.++++.+.                                                
T Consensus       261 -----pD~KIlATAGWD~RiRVyswrtl~pLA------------------------------------------------  287 (323)
T KOG0322|consen  261 -----PDGKILATAGWDHRIRVYSWRTLNPLA------------------------------------------------  287 (323)
T ss_pred             -----cCCcEEeecccCCcEEEEEeccCCchh------------------------------------------------
Confidence                 999999999999999999988776543                                                


Q ss_pred             CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                             .+..|...|.+++|+||...+ +++|+|..|-+|++
T Consensus       288 -------VLkyHsagvn~vAfspd~~lm-AaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 -------VLKYHSAGVNAVAFSPDCELM-AAASKDARISLWKL  322 (323)
T ss_pred             -------hhhhhhcceeEEEeCCCCchh-hhccCCceEEeeec
Confidence                   233688889999999998888 99999999999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=2.9e-13  Score=124.49  Aligned_cols=144  Identities=19%  Similarity=0.349  Sum_probs=120.8

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecC--CCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      ..++++-.+. |+|||+.+-+.+.++..  .+..++.++.+++.+.+++.-+  ..|.|.+||..+-+.+.++.+|++.+
T Consensus        98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l  176 (391)
T KOG2110|consen   98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL  176 (391)
T ss_pred             ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence            3455555544 99999999998766643  3666788888888888887643  57899999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          163 SCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~-~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .|++|+|+|.+||+++  | .|+||.+.+|+.+.+|....  ..|.+++|+|++++|.+++ ..++|++|.+...
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV  250 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence            9999999999999999  5 67999999999999997544  4577999999999998887 6899999988654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=6.9e-14  Score=144.12  Aligned_cols=287  Identities=14%  Similarity=0.162  Sum_probs=195.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|+|=...++++...-.|+|||++.+++...|..+...               ...++.+......       +..++++
T Consensus      1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~-------D~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQ-------DDALLLT 1128 (1387)
T ss_pred             eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeeccc-------chhheee
Confidence            88998888998887778999999999998877643311               2234445544433       2678999


Q ss_pred             EECCCeEEEEEccCC-----eEEEEe--cCCC----CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-C
Q 008041           92 GTGGGDVLALAVSAG-----QLKWRL--SDCH----PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-T  159 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~-----~~~~~~--~~~h----~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~  159 (579)
                      |+.||.|+||+-...     +.+...  +.++    .+.=.-+.|..+..+++++|.-..|+|||...-..+..+... .
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence            999999999986433     222111  1111    111134567777777888888899999999877776665543 3


Q ss_pred             CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCC--EEEEEEecCCC-EEEEEecCCCeEEEEEcC
Q 008041          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGK-YVLSSAVGERYIALWRTD  230 (579)
Q Consensus       160 ~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~---~~~~~~~h~~~--v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~  230 (579)
                      ..|+++.-+. .|+++++|.  |.|++||.+...   .+.....|...  |..+.+-+.|- .|++++ .||.|++||++
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence            3677766543 468888886  999999998643   46777888877  99999988664 488887 79999999999


Q ss_pred             CCccccceeeeeeec-C--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccc
Q 008041          231 GVKKQSASCVLAMEH-P--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      ......   ...... -  +..++++...     ++...+|+|+. +.|+||++.. +++..++..              
T Consensus      1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n-------------- 1343 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN-------------- 1343 (1387)
T ss_pred             cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecCh-hhhcccccC--------------
Confidence            853221   112211 1  2235556555     78889999988 9999999753 333322200              


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                               ..+-                         ......+.|++|+|--.++ +.|+.|.++.++...
T Consensus      1344 ---------~~F~-------------------------~q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1344 ---------PGFM-------------------------GQRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCE 1381 (1387)
T ss_pred             ---------cccc-------------------------cCcCCCcceeeecchhHhh-hhccCCceEEEeecC
Confidence                     0000                         0122356999999999999 889999999888663

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.64  E-value=2.6e-15  Score=135.40  Aligned_cols=224  Identities=14%  Similarity=0.156  Sum_probs=159.2

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      -++|||+|+|+|+++.- ++.|=|..+-+..+.|..                   -..+.-+.|...+        --.+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-------------------ldki~yieW~ads--------~~il   64 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-------------------LDKIVYIEWKADS--------CHIL   64 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-------------------HHHhhheeeeccc--------eeee
Confidence            36899999999999954 788888877665544431                   1134456676433        3446


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      .....++.|.+|++...+-..++. ...+++.+++|+|||+.++ +..-|-+|.+|.+.+.+... ++..+..+..++|+
T Consensus        65 C~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   65 CVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH  142 (447)
T ss_pred             eeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC
Confidence            667788899999999998877774 4667899999999997754 55578899999998766543 33344567889999


Q ss_pred             cCCCEEEEECC-----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe----EEEEEcCCCcccccee
Q 008041          169 SDGKMLATAAG-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY----IALWRTDGVKKQSASC  239 (579)
Q Consensus       169 p~g~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~----i~vwd~~~~~~~~~~~  239 (579)
                      |||++.+..+.     -+.+...+....++.+.-.+-..+.+.|+|||..+++   .|..    |..|.           
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---wd~~Leykv~aYe-----------  208 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---WDNVLEYKVYAYE-----------  208 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---ecchhhheeeeee-----------
Confidence            99999999882     2333333344556666666667789999999998875   3432    22221           


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                            -+.-+..+.|+     |.+++|++|+.|+.+++.|--+.+.+.
T Consensus       209 ------~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  209 ------RGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             ------eccceeEEEec-----cccceEEeeccchhhhhhceeeeeehh
Confidence                  11223455666     999999999999999998866665543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=1.2e-15  Score=143.56  Aligned_cols=225  Identities=15%  Similarity=0.212  Sum_probs=173.6

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+.|+.+|++|+.|+..|.|-.+|+.++.+..++..-                   ..+..+.|..          +..+
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------Etv~Dv~~LH----------neq~  184 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------ETVRDVTFLH----------NEQF  184 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehh-------------------hhhhhhhhhc----------chHH
Confidence            4589999999999999999999999999998877521                   1222333333          2223


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p  169 (579)
                      +......-++|||-..-++-  .++.| .+|..+.|.|.--.|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus       185 ~AVAQK~y~yvYD~~GtElH--Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  185 FAVAQKKYVYVYDNNGTELH--CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             HHhhhhceEEEecCCCcEEe--ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            44445566899987655542  22333 5799999999888899999999999999999999999988888999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc
Q 008041          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      -+-.+-+|.  |+|.+|.....+++..+-.|.++|.+|++.++|+|++++| .|+.++|||++.-....  . ....++.
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql~--t-~~tp~~a  337 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQLH--T-YRTPHPA  337 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeeccccccc--e-eecCCCc
Confidence            988888887  9999999999999999999999999999999999999998 79999999999876431  1 1112332


Q ss_pred             eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                         ..+.++      + +-+++.+....+.||.
T Consensus       338 ---~~ls~S------q-kglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 ---SNLSLS------Q-KGLLALSYGDHVQIWK  360 (545)
T ss_pred             ---cccccc------c-ccceeeecCCeeeeeh
Confidence               333443      3 3344555656899994

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=7.4e-13  Score=119.54  Aligned_cols=233  Identities=15%  Similarity=0.185  Sum_probs=163.6

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc--cccccccccccccccccccccceEEeeecccccccccC
Q 008041            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .+.++|+.|..-+++|..+| .+||+.+.-+....-+-..  -.+....|                             .
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf-----------------------------R   57 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF-----------------------------R   57 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh-----------------------------h
Confidence            36679999999999988776 7999987533221111111  11111111                             1


Q ss_pred             CcEEEEEEC-C------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeec
Q 008041           86 SSLLVLGTG-G------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRA  157 (579)
Q Consensus        86 ~~~l~~~~~-~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~  157 (579)
                      .++++..++ +      ..|.|||=....++.++  ....+|.++.+.++  .+++. ..+.|++|... +-+.++.+..
T Consensus        58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et  132 (346)
T KOG2111|consen   58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET  132 (346)
T ss_pred             hceEEEecCCCCCCCCCceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec
Confidence            334444333 3      24999997777776665  36789999999765  45555 57789999987 3455555443


Q ss_pred             C--CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEc
Q 008041          158 S--TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRT  229 (579)
Q Consensus       158 ~--~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~-i~vwd~  229 (579)
                      .  ..++.+++-+.+-.+||.-+   |+|+|-|+...+.  -..+..|.+.|.+++.+.+|..+++++ ..|+ |+|||.
T Consensus       133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt  211 (346)
T KOG2111|consen  133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDT  211 (346)
T ss_pred             ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEc
Confidence            2  23455555554555666656   8999999987655  367789999999999999999999998 4665 899999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .+++..   ..+.-+.....+.++.|+     |++.+|+++|..|+++||.++..
T Consensus       212 ~~g~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  212 EDGTLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCCcEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecC
Confidence            999865   334445556677888898     99999999999999999987654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.5e-14  Score=137.26  Aligned_cols=282  Identities=18%  Similarity=0.270  Sum_probs=193.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+-|+.+  .|...|..|++||.|.+|.+||+..+.....|.+                ||-...+..- |.|...    
T Consensus       142 ~GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~NvfQaK-FiP~s~----  198 (559)
T KOG1334|consen  142 KGCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVFQAK-FIPFSG----  198 (559)
T ss_pred             CCcccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchhhhh-ccCCCC----
Confidence            4567556  9999999999999999999999999988776642                3322222211 333332    


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCe-EE-EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee---
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQ-LK-WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR---  156 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~-~~-~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~---  156 (579)
                         ..-+++++.||.|++=.+.... +. ......|.++|.-++.-|+..+ |++++.|+.+.-+|++.+.+..++.   
T Consensus       199 ---d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~  275 (559)
T KOG1334|consen  199 ---DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE  275 (559)
T ss_pred             ---CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence               4568999999999987765433 32 2333579999999999997766 9999999999999998876544432   


Q ss_pred             cCCC---CeeEEEEccCCC-EEEEEC--CeEEEEECCCCe------eeEEeecC------CCCEEEEEEecCCCEEEEEe
Q 008041          157 ASTK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSGH------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       157 ~~~~---~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~------~~~~~~~h------~~~v~~l~~s~~~~~l~s~~  218 (579)
                      .+..   ....++.+|... .+++++  .-+++||.+.-.      .+.+|-.|      .-.|++++|+.++.-++++-
T Consensus       276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY  355 (559)
T KOG1334|consen  276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY  355 (559)
T ss_pred             cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence            2333   678899999776 667776  678999987532      23344222      34689999997776665543


Q ss_pred             cCCCeEEEEEcCCCcc----------ccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          219 VGERYIALWRTDGVKK----------QSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                       .|-.|+++....+..          ....+++.-.-.. .+..+-+|.     |...|+++|+.-|.|.||+-.+++.+
T Consensus       356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc-----CccceEEecCccceEEEEecchhHHH
Confidence             688899995443321          0011122221122 233344555     88999999999999999999999999


Q ss_pred             cccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041          288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      +-.++.+..+.|..     ...-++.+++.+.+.
T Consensus       430 ~~MegDr~VVNCLE-----pHP~~PvLAsSGid~  458 (559)
T KOG1334|consen  430 RFMEGDRHVVNCLE-----PHPHLPVLASSGIDH  458 (559)
T ss_pred             HHhhcccceEeccC-----CCCCCchhhccCCcc
Confidence            88887777777654     122244666666654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.61  E-value=7.2e-15  Score=128.81  Aligned_cols=153  Identities=12%  Similarity=0.107  Sum_probs=112.0

Q ss_pred             CCEEEEEEcc-CCCE--EEEEeCCCcEEEEeCCCCc----------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEE
Q 008041          118 GGVSAISFAT-HGSC--IYSAGADGMVCEIDPLTGS----------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLK  182 (579)
Q Consensus       118 ~~V~~l~~~~-~~~~--l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~  182 (579)
                      +.+.+..+.. ++.+  ++.|..+|.|.+||+.++.          .+.....|..+|.++.+.+.-..=++|+  ..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            4456665422 3333  6678899999999999873          3334456888999999987555545555  5777


Q ss_pred             EEECCC--Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCC
Q 008041          183 TFNCSD--HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       183 vwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                      .|+++.  +.+  -.+..-..-.|..+.+-||++.++++| +|+.|+||+.++....     ..+..+...+.+++|+  
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pL-----AVLkyHsagvn~vAfs--  302 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPL-----AVLKYHSAGVNAVAFS--  302 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCch-----hhhhhhhcceeEEEeC--
Confidence            887753  222  112222234578899999999999998 9999999999998754     3344555777888898  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEEc
Q 008041          259 GVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       259 ~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                         |+...+|+++.|++|.+|++
T Consensus       303 ---pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 ---PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ---CCCchhhhccCCceEEeeec
Confidence               99899999999999999985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.61  E-value=1.2e-13  Score=128.48  Aligned_cols=243  Identities=18%  Similarity=0.207  Sum_probs=164.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC----------------CeEEEEeccCcccccccccccccccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----------------GQVQTEFADIASTETTSLYGNRLEREHLSV   66 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (579)
                      +.+|+.+  .|+|+|+.||+|+.+|.|.+|....                ......+.+|..                  
T Consensus        65 ~~aVN~v--Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~------------------  124 (434)
T KOG1009|consen   65 TRAVNVV--RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD------------------  124 (434)
T ss_pred             cceeEEE--EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc------------------
Confidence            4677555  9999999999999999999997652                011122222322                  


Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~  146 (579)
                      .+-.++|.+.         +.++++++.|..+++||+..|...... .+|..-|..++|.|-++++++-+.|...+.+++
T Consensus       125 diydL~Ws~d---------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  125 DIYDLAWSPD---------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             chhhhhccCC---------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceeee
Confidence            3334556554         788999999999999999999998655 789999999999999999999999987777766


Q ss_pred             CCCceeeEee----------c---------CC----CCeeEEEEccCCCEEEEECC-----------eEEEEECCC-Cee
Q 008041          147 LTGSLLGKFR----------A---------ST----KGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HKK  191 (579)
Q Consensus       147 ~~~~~~~~~~----------~---------~~----~~v~~l~~~p~g~~l~~~~~-----------~i~vwd~~~-~~~  191 (579)
                      ...+.+....          .         |.    .-...++|+|+|.++++..|           ..++|+-.. .++
T Consensus       195 ~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP  274 (434)
T KOG1009|consen  195 KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP  274 (434)
T ss_pred             eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence            4332221111          0         11    23557899999999998752           335554332 234


Q ss_pred             eEEeecCCCCEEEEEEec------------------CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041          192 MQKFSGHPGAVRFMTFSD------------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       192 ~~~~~~h~~~v~~l~~s~------------------~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                      +..+++-..++..+.|+|                  -+-.++.++  .+.|++||.++....   +.. ..-+-..++-.
T Consensus       275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v-~nihy~~iTDi  348 (434)
T KOG1009|consen  275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVV-DNIHYSAITDI  348 (434)
T ss_pred             eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEE-eeeeeeeecce
Confidence            555555555666666654                  122344443  578999998886543   111 12223334555


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      +|+     +||..++..|.||-+.+-.++..++
T Consensus       349 aws-----~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  349 AWS-----DDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence            565     8999999999999888877666554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=9.6e-15  Score=139.86  Aligned_cols=178  Identities=20%  Similarity=0.257  Sum_probs=138.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      -++|  +|-.|+|||.=|++++.||.|++|. ++|.+..++                  .+...++.|..|.|.+.+   
T Consensus       104 ~~A~--~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl------------------~Q~~~~v~c~~W~p~S~~---  159 (737)
T KOG1524|consen  104 AAAI--SSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV------------------VQNEESIRCARWAPNSNS---  159 (737)
T ss_pred             hhhh--hhcccCCCCceeeeecCCceEEEEe-ccchHHHHH------------------hhcCceeEEEEECCCCCc---
Confidence            4566  7779999999999999999999998 456543332                  223456789999987643   


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                             ++-+..|.+.|=.+..+..+.+. ++|.+-|.++.|++..+.+++|+.|-..++||- .|..+.+-..|+.+|
T Consensus       160 -------vl~c~g~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  160 -------IVFCQGGHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI  230 (737)
T ss_pred             -------eEEecCCeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence                   34455566776666655544444 679999999999999999999999999999994 688888878899999


Q ss_pred             eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      ++++|+|+ +.++.++ ++.++=           ....+.|..++|++||..++.++ ..|.+.+
T Consensus       231 TSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~  282 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGT-STGQLIV  282 (737)
T ss_pred             eeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence            99999999 7777777 666621           23457899999999999988877 4665544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=9.6e-14  Score=133.30  Aligned_cols=248  Identities=16%  Similarity=0.233  Sum_probs=166.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .++-.|.+|+.--. ..+.+|+.+.+....      .++....|.        ....+|..+.......    .+--+++
T Consensus       130 ~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~------~pi~k~~y~--------gt~P~cHdfn~~~a~~----~g~dllI  190 (636)
T KOG2394|consen  130 NQSGKGDRLCFNVG-RELYVYSYRGAADLS------KPIDKREYK--------GTSPTCHDFNSFTATP----KGLDLLI  190 (636)
T ss_pred             cccCCCCEEEEecC-CeEEEEEccCcchhc------cchhhhccc--------CCCCceecccccccCC----CCcceEE
Confidence            44555666665442 357888876532211      112222221        2234455553322111    1667899


Q ss_pred             EECCCeEEEEEccCCeEEEEecC----CCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC--------------Cc--
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT--------------GS--  150 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~--------------~~--  150 (579)
                      |-..|.|.+.|+...+.. +++.    -....|+|+.|-|.+. .|+.+-.+|.+++||...              +.  
T Consensus       191 Gf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f  269 (636)
T KOG2394|consen  191 GFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQF  269 (636)
T ss_pred             eeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCee
Confidence            999999999998873322 1111    1236899999999554 477777899999997531              11  


Q ss_pred             ------------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041          151 ------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       151 ------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                                  ++..+....+.|+..+|+|||++||+.+  |.++|||..+.+++..++..-+...|++|+|||+|+++
T Consensus       270 ~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  270 AILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT  349 (636)
T ss_pred             EEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence                        1122222345788999999999999999  99999999999888888777789999999999999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecC-----C-------------------------cccC----
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN-----G-------------------------GVDD----  262 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------------------~~~~----  262 (579)
                      +| +|.-|.||.+...+.     +..-..+...++.++|++     .                         ..+.    
T Consensus       350 GG-EDDLVtVwSf~erRV-----VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~  423 (636)
T KOG2394|consen  350 GG-EDDLVTVWSFEERRV-----VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP  423 (636)
T ss_pred             cC-CcceEEEEEeccceE-----EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence            98 799999999988753     344445556666666651     0                         0001    


Q ss_pred             ---------CCcEEEEEEcCCeEEEEEcCCce
Q 008041          263 ---------AGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       263 ---------~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                               ....+.+.++|-.+.+||+....
T Consensus       424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             ccccccccceEEEeecccccceEEEEecchhh
Confidence                     12468888999999999986543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.8e-14  Score=134.75  Aligned_cols=199  Identities=15%  Similarity=0.120  Sum_probs=149.5

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec--
Q 008041          121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG--  197 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~--  197 (579)
                      .+++|+++|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++.+ ...+||+++++..+.....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence            6889999999999999999999999888888888888999999999999999999988 7999999999977666542  


Q ss_pred             CCCCEEEEEEecCC---CE-EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041          198 HPGAVRFMTFSDNG---KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       198 h~~~v~~l~~s~~~---~~-l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  273 (579)
                      .......+.|+.|+   .+ +++.-..-+.|+.|++........-...+.......++++..+     ++|++++.|+.|
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d  302 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD  302 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence            23446678888776   32 3332223456777776554321000111122233456777777     999999999999


Q ss_pred             CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008041          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (579)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (579)
                      |.|-|++..+.+.+...+                                                      ..|...|+
T Consensus       303 GsVai~~~~~lq~~~~vk------------------------------------------------------~aH~~~VT  328 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVK------------------------------------------------------EAHLGFVT  328 (398)
T ss_pred             CcEEEEEeceeeeeEeeh------------------------------------------------------hhheeeee
Confidence            999999987766543111                                                      15778899


Q ss_pred             EEeecCCcceeeccccceecccceee
Q 008041          354 NLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      .+.|+||.+++ ++-|.|....+..+
T Consensus       329 ~ltF~Pdsr~~-~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  329 GLTFSPDSRYL-ASVSSDNEAAVTKL  353 (398)
T ss_pred             eEEEcCCcCcc-cccccCCceeEEEE
Confidence            99999999999 88888888777766

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.2e-13  Score=142.47  Aligned_cols=242  Identities=17%  Similarity=0.211  Sum_probs=169.0

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CCC----eEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           16 ALDYFAICSGDARIKIWDT-LKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      |..++.+|+.||.|+||+- .++    +.+..+.+..+    ...      +..+. .....|....         ..++
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~----~~~------~~r~~-~~v~dWqQ~~---------G~Ll 1181 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD----QLP------GARGT-GLVVDWQQQS---------GHLL 1181 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccc----cCc------cCCCC-CeeeehhhhC---------CeEE
Confidence            5568999999999999953 332    33333332211    111      11111 2456676653         4456


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCC--eeE
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKG--ISC  164 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~--v~~  164 (579)
                      +++.-..|+|||.....++..+..+-...|+++.-+- .|+.++.|..||.|++||.+..   ..+..++.|...  |..
T Consensus      1182 ~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence            6666778999999999888777666667788886543 5789999999999999998743   357778888886  999


Q ss_pred             EEEccCCCE-EEEEC--CeEEEEECCCCee--eEEeecCC--C-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          165 MAVSSDGKM-LATAA--GQLKTFNCSDHKK--MQKFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       165 l~~~p~g~~-l~~~~--~~i~vwd~~~~~~--~~~~~~h~--~-~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      +.+.+.|-- +++|+  |.|++||++....  ..+...|.  + ..+++..++....+++|+ . +.|+||++...+...
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceEEEEecChhhhcc
Confidence            999987754 88887  9999999997422  22223332  3 589999999999988876 4 899999998776432


Q ss_pred             ceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          237 ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       237 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .... ..+........|+.|.     |...++++|+.|..|.||.....
T Consensus      1340 ~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence            1100 1112223344777786     88899999999999999987654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.58  E-value=3.4e-13  Score=137.01  Aligned_cols=244  Identities=18%  Similarity=0.218  Sum_probs=168.9

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCE--EEEEeC
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSC--IYSAGA  137 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~--l~s~~~  137 (579)
                      ...++|+.+.+.+        ..+++.|+.+|.|.+||++.+..     +......|..+|+.+.|..+-.-  |++++.
T Consensus       242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss  313 (555)
T KOG1587|consen  242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS  313 (555)
T ss_pred             CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence            3467788888876        67899999999999999997765     22333579999999999775444  999999


Q ss_pred             CCcEEEEeCCCCce------eeEee------cCCCCeeEEEEccCC-CEEEEEC--CeEEEEE---CCCCe-----eeEE
Q 008041          138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSDG-KMLATAA--GQLKTFN---CSDHK-----KMQK  194 (579)
Q Consensus       138 d~~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd---~~~~~-----~~~~  194 (579)
                      ||.|..|+++.-..      .....      .....+++++|.|.. ..+++|.  |.|+--+   .+.+.     .+..
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~  393 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST  393 (555)
T ss_pred             CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence            99999998764322      11111      112378899998843 4566666  8776632   22221     2345


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC-CcEEEEEEcC
Q 008041          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET  273 (579)
Q Consensus       195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d  273 (579)
                      +..|.++|..+.++|=+..++.++ .|.++++|+......    .++........+..+.|+     |. ...++++..|
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~  463 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD  463 (555)
T ss_pred             ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence            667889999999999887666666 499999999773321    234444555556677787     54 3567888889


Q ss_pred             CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008041          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (579)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (579)
                      |.|.+||+.....    .|.             .+                                    ...+.....
T Consensus       464 G~l~iWDLl~~~~----~Pv-------------~s------------------------------------~~~~~~~l~  490 (555)
T KOG1587|consen  464 GNLDIWDLLQDDE----EPV-------------LS------------------------------------QKVCSPALT  490 (555)
T ss_pred             Cceehhhhhcccc----CCc-------------cc------------------------------------ccccccccc
Confidence            9999999753321    110             00                                    001122445


Q ss_pred             EEeecCCcceeeccccceecccceeee
Q 008041          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+.|+++|+.| +.|...|++.++++.
T Consensus       491 ~~~~s~~g~~l-avGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  491 RVRWSPNGKLL-AVGDANGTTHILKLS  516 (555)
T ss_pred             eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence            66789999999 999999999999884

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=2.9e-14  Score=136.77  Aligned_cols=137  Identities=22%  Similarity=0.415  Sum_probs=115.2

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC--------------CeEEEE-ecC------------CCC
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA--------------GQLKWR-LSD------------CHP  117 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~--------------~~~~~~-~~~------------~h~  117 (579)
                      ...++|+.|.+.+        ...++++-.+|.+++||..-              +..... ..+            --.
T Consensus       219 ktsvT~ikWvpg~--------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~  290 (636)
T KOG2394|consen  219 KSSVTCIKWVPGS--------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE  290 (636)
T ss_pred             ccceEEEEEEeCC--------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence            4689999999986        67788999999999997531              110000 000            012


Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008041          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~  195 (579)
                      +.|..++|+|||++|++.+.||.++|||..+.+.+..++..-+...|++|+|||++|++|+  .-|.||.+...+.+..-
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            4688999999999999999999999999998888888888888999999999999999999  78999999999999999


Q ss_pred             ecCCCCEEEEEEec
Q 008041          196 SGHPGAVRFMTFSD  209 (579)
Q Consensus       196 ~~h~~~v~~l~~s~  209 (579)
                      ++|.+.|+.++|.|
T Consensus       371 qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  371 QGHKSWVSVVAFDP  384 (636)
T ss_pred             cccccceeeEeecc
Confidence            99999999999983

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.6e-13  Score=138.73  Aligned_cols=206  Identities=15%  Similarity=0.154  Sum_probs=134.4

Q ss_pred             CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC---CeEEEEE
Q 008041           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALA  102 (579)
Q Consensus        26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd  102 (579)
                      +..|.+||..... ...+..+...+....|+++                           +..++.++.+   ..|++||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~i~i~d  234 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD---------------------------GSKLAYVSFENKKSQLVVHD  234 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCC---------------------------CCEEEEEEecCCCcEEEEEe
Confidence            4689999986554 4445544444454555544                           6667666543   3599999


Q ss_pred             ccCCeEEE-EecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEE--EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008041          103 VSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       103 ~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~i--wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      +.+++... ....+|   ..+++|+|||+.|+.++ .+|.+.+  ||+.++.. ..+..+...+.+..|+|||+.++.++
T Consensus       235 l~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s  310 (429)
T PRK01742        235 LRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS  310 (429)
T ss_pred             CCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE
Confidence            99876422 112333   34689999999887764 6776555  56665554 45555666788999999999877654


Q ss_pred             ---CeEEEEECC--CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041          179 ---GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       179 ---~~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                         +...+|++.  .+. ...+ .+..  ....|+|||++++..+ .++ +.+||+.+++..   . .....   .....
T Consensus       311 ~~~g~~~I~~~~~~~~~-~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~---~-lt~~~---~~~~~  377 (429)
T PRK01742        311 DRSGSPQVYRMSASGGG-ASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTE---V-LSSTF---LDESP  377 (429)
T ss_pred             CCCCCceEEEEECCCCC-eEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeE---E-ecCCC---CCCCc
Confidence               666777654  332 2222 3443  4578999999998876 454 666999887532   1 11111   11234


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          254 CIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .|+     |||++|+.++.+|.+.+|++
T Consensus       378 ~~s-----PdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        378 SIS-----PNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             eEC-----CCCCEEEEEEcCCCceEEEE
Confidence            465     99999999999998888875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.5e-13  Score=138.90  Aligned_cols=189  Identities=15%  Similarity=0.143  Sum_probs=126.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++  ...+|||||++||+++.+   ..|.+||+.+++.... ....              ++    .....|.|.    
T Consensus       204 ~~v--~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--------------g~----~~~~~wSPD----  258 (429)
T PRK01742        204 QPL--MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--------------GH----NGAPAFSPD----  258 (429)
T ss_pred             Ccc--ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--------------Cc----cCceeECCC----
Confidence            346  455999999999988754   3699999988864322 1111              11    113455543    


Q ss_pred             ccccCCcEEEEE-ECCCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-ceeeEe
Q 008041           81 KRKLGSSLLVLG-TGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF  155 (579)
Q Consensus        81 ~~~~~~~~l~~~-~~~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~-~~~~~~  155 (579)
                           +..|+++ +.+|.  |++||+.+++.. .+ ..+...+.+..|+|||+.++.++ .++...+|++... .....+
T Consensus       259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             -----CCEEEEEEecCCcEEEEEEECCCCCeE-ee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence                 5556665 46776  555577666653 33 34667788999999999876655 5778888876432 222223


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                       .+..  .+..|+|||+.++.++ ..+.+||+.+++.......+  ....+.|+|||+++++++ .++.+.+|.+.
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~  401 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV  401 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence             3333  4678999999998887 67778999988654322222  335678999999999987 58888888764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=7.3e-13  Score=128.28  Aligned_cols=257  Identities=17%  Similarity=0.254  Sum_probs=171.6

Q ss_pred             EEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCc-ccc-ccccccccccc-cccccccceEEeeec----------
Q 008041           11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIA-STE-TTSLYGNRLER-EHLSVDYTCMKWLSV----------   76 (579)
Q Consensus        11 ~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~w~~~----------   76 (579)
                      +..||||+|+ |+|.+.-.|++||+.+-.+.-  ..|- +.+ .-...+.++.. .++. .-..+.+..-          
T Consensus        57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF--ERhlDae~V~feiLsDD~SK~v~L~-~DR~IefHak~G~hy~~RIP  133 (703)
T KOG2321|consen   57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKF--ERHLDAEVVDFEILSDDYSKSVFLQ-NDRTIEFHAKYGRHYRTRIP  133 (703)
T ss_pred             eEecCCCcEEEEecccCCceEEEEcccceeee--eecccccceeEEEeccchhhheEee-cCceeeehhhcCeeeeeecC
Confidence            3899999986 567788999999997655432  2111 111 11111111100 0000 0000111100          


Q ss_pred             --ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           77 --DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        77 --~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                        ..+......+.-|++++....|+-+|+..|..+.-+ ....++++++..++-..+|++|+.+|.|..||.+....+.+
T Consensus       134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~  212 (703)
T KOG2321|consen  134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT  212 (703)
T ss_pred             cCCccccccCCCccEEEeecCcceEEEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence              000011112445788888889999999999987555 34568899999999888999999999999999988776665


Q ss_pred             eec------CCC-----CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecC--CCEEEEEe
Q 008041          155 FRA------STK-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSA  218 (579)
Q Consensus       155 ~~~------~~~-----~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~--~~~l~s~~  218 (579)
                      +..      |.+     .|+++.|+.+|-.+++|.  |.+++||+++.+++..- .+..-+|..+.|.+.  +..+++. 
T Consensus       213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-  291 (703)
T KOG2321|consen  213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-  291 (703)
T ss_pred             eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-
Confidence            443      223     499999999999999998  99999999998886543 233568899999765  4456654 


Q ss_pred             cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                       +...++|||-.+++..     ..+..... +...|+-     |++.+++++..++.+..|=++..
T Consensus       292 -Dk~~~kiWd~~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  292 -DKRILKIWDECTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             -chHHhhhcccccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcccc
Confidence             5788999999998743     23333333 4444444     89999999999998888865543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.55  E-value=1.4e-13  Score=135.24  Aligned_cols=230  Identities=15%  Similarity=0.199  Sum_probs=160.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .|++||.||+.+|+|+.|..|.||+-+-.-.+. + .|..                  .+.|+.|+|.+      
T Consensus        54 DtV--ycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y-SH~D------------------~IQCMsFNP~~------  105 (1081)
T KOG1538|consen   54 DTV--YCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y-SHND------------------AIQCMSFNPIT------  105 (1081)
T ss_pred             ceE--EEEEEccCCceeccCCCceeEEEecccccceee-e-ccCC------------------eeeEeecCchH------
Confidence            456  566999999999999999999999865222111 1 2333                  44555555542      


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK  160 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~  160 (579)
                         ..+++++ -.+.-+|+........   ..-...|.+++|..||++++.|-.||+|.+-+ .+|+....+..   ...
T Consensus       106 ---h~LasCs-LsdFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Ns  177 (1081)
T KOG1538|consen  106 ---HQLASCS-LSDFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNS  177 (1081)
T ss_pred             ---HHhhhcc-hhhccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCC
Confidence               2344443 3456778876654431   12346789999999999999999999999987 45655444443   556


Q ss_pred             CeeEEEEccCC-----CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          161 GISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g-----~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +|.+++|+|..     ..+++.+  .++..|.+ +|+.+.+-..-.-...|+.+.++|.|++.|| .|+.+++|.-..-.
T Consensus       178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~Gvr  255 (1081)
T KOG1538|consen  178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDGVR  255 (1081)
T ss_pred             CceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEcc-CCCceEEEeecCeE
Confidence            99999999953     4666666  56777765 3444443333334457899999999999998 59999998754432


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                            .-++...+..+-.+...     |++++++.|+.||+|--|++-
T Consensus       256 ------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  256 ------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhhH
Confidence                  23444555556556665     999999999999999999853

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=5.7e-13  Score=123.45  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=126.9

Q ss_pred             CcEEEEEECC--CeEEEEEccCCeEEEEecCCCC--------CCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC-cee
Q 008041           86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHP--------GGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLL  152 (579)
Q Consensus        86 ~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~--------~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~-~~~  152 (579)
                      ..++++|+..  ..+.+||+...+.++.-..-.+        -.++++.|-+.  ...|++++.-+.|++||.+.+ +++
T Consensus       161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence            5667778888  7799999999877655432111        13568899887  778999999999999999865 678


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      ..|.....+++++...|+|+.+++|.  +.+..||.+.++.+.. +.+..+.|++|..+|.+++++++| -|+.++|+|+
T Consensus       241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~  319 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDI  319 (412)
T ss_pred             eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeec
Confidence            88888888999999999999999998  9999999999998766 889999999999999999999998 6999999999


Q ss_pred             CCCccc
Q 008041          230 DGVKKQ  235 (579)
Q Consensus       230 ~~~~~~  235 (579)
                      .+.+..
T Consensus       320 ktrkll  325 (412)
T KOG3881|consen  320 KTRKLL  325 (412)
T ss_pred             ccchhh
Confidence            996543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.55  E-value=4.9e-15  Score=148.77  Aligned_cols=238  Identities=19%  Similarity=0.196  Sum_probs=171.9

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~  191 (579)
                      .+|...|+|+.|...|.++++|+.|..|+||.+.++.+.....+|.+.|+.++.+.+..++++++  ..|++|-+.++.+
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            48999999999999999999999999999999999999999999999999999999988898888  5799999999999


Q ss_pred             eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-cceeeeeeecCceeEEeEEecCCcccCCCcEEEEE
Q 008041          192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       192 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  270 (579)
                      +..+.+|++.|++|+|+|--    +++ .||++++||.+-.-.. .... ... ..........+.     ..+..++++
T Consensus       267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~y~prp-~~~-~~~~~~~s~~~~-----~~~~~f~Tg  334 (1113)
T KOG0644|consen  267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRIYVPRP-LKF-TEKDLVDSILFE-----NNGDRFLTG  334 (1113)
T ss_pred             HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccccCCCC-CCc-ccccceeeeecc-----ccccccccc
Confidence            99999999999999999964    444 7999999998822111 0000 011 122333344444     677889999


Q ss_pred             EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008041          271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG  350 (579)
Q Consensus       271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~  350 (579)
                      +.|+....|...-..   ......+-+.    ++.+..   .+.+++.++-.        ...+....+.....+.+|..
T Consensus       335 s~d~ea~n~e~~~l~---~~~~~lif~t----~ssd~~---~~~~~ar~~~~--------~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLA---WRSNLLIFVT----RSSDLS---SIVVTARNDHR--------LCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             cCCcccccchhhHhh---hhccceEEEe----cccccc---ccceeeeeeeE--------eeeeecccchhhhhhccccc
Confidence            999998888653211   1110001011    011111   13333333211        11122333344456778999


Q ss_pred             CcEEEeecCCcceeeccccceecccceeeee
Q 008041          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      .+..+.++|-...++.+++.|++..+|++-.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence            9999999999988889999999999999853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.1e-12  Score=117.81  Aligned_cols=132  Identities=18%  Similarity=0.333  Sum_probs=99.7

Q ss_pred             CeEEEEEccCCe-EEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008041           96 GDVLALAVSAGQ-LKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK  172 (579)
Q Consensus        96 g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~  172 (579)
                      |...+|.+.... ....+.-...++|.+++|+|+|+.|+.+  ..++.|.+||++ ++.+..+.  ...++.+.|+|+|+
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR  113 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence            335555553322 2222322345679999999999987654  357799999986 66666664  46778999999999


Q ss_pred             EEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----CCeEEEEEcCCC
Q 008041          173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV  232 (579)
Q Consensus       173 ~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-----d~~i~vwd~~~~  232 (579)
                      ++++++     |.|.+||+++.+.+.++. |. .++.+.|+|||++++++...     |+.++||+....
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999986     579999999998887765 43 47899999999999998753     788999998654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=4.3e-13  Score=121.04  Aligned_cols=206  Identities=8%  Similarity=0.059  Sum_probs=156.9

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC  142 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~  142 (579)
                      ..+++|.+|.+.         ...++++..+..|.||.....+  .....+..|...|++++|+|..+.|++|+.|..-+
T Consensus        10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen   10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            457788888875         6789999999999999988776  23345578999999999999999999999999999


Q ss_pred             EEeCCCC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCE
Q 008041          143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       143 iwd~~~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~  213 (579)
                      +|....+   ++.-.+..+....+++.|+|.++.|++|+  ..|.||-.+...-    ...-+.+.+.|++++|+|++-.
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            9998433   44555666888999999999999999999  5778876654322    1122456788999999999988


Q ss_pred             EEEEecCCCeEEEEEcCCCccc--c-----------ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          214 VLSSAVGERYIALWRTDGVKKQ--S-----------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       214 l~s~~~~d~~i~vwd~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      +++++ .|+..+|++..-....  .           ...+.........+..+.|+     |+|..|+-.+.|..+.+=|
T Consensus       161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence            88776 7999999975321100  0           01122222445556677777     9999999999999999988


Q ss_pred             cCCce
Q 008041          281 GQNIE  285 (579)
Q Consensus       281 ~~~~~  285 (579)
                      .....
T Consensus       235 a~~p~  239 (361)
T KOG1523|consen  235 AAGPS  239 (361)
T ss_pred             cCCCc
Confidence            66553

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=3.8e-12  Score=116.78  Aligned_cols=195  Identities=18%  Similarity=0.300  Sum_probs=139.3

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .+|.+  +|++.-.-||++..|-.|+|||-.+ .+...++                 ......++|++|-|..       
T Consensus       100 dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls-------  152 (445)
T KOG2139|consen  100 DLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS-------  152 (445)
T ss_pred             ceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC-------
Confidence            34555  8999777888999999999999765 4444443                 2235678899999876       


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEE-----------Ee--cCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCc
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKW-----------RL--SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGS  150 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~-----------~~--~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~  150 (579)
                       ..-+++|+.. -|.+|.....-...           ++  ..+| .+|+++.|++||..+++++ .|..|.+||..++.
T Consensus       153 -aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  153 -ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             -cceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence             4456666654 47888765321110           11  1345 6899999999999999987 56789999999998


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      .+....-..+.++-+.|||||.++.++.  +..++|+...........-..+.|....|+|.|++|+.+++  +.-.+|.
T Consensus       230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~lys  307 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLYS  307 (445)
T ss_pred             cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEEE
Confidence            7766544566889999999999998887  89999965433222222233458999999999999888764  4445565


Q ss_pred             cCC
Q 008041          229 TDG  231 (579)
Q Consensus       229 ~~~  231 (579)
                      +..
T Consensus       308 l~f  310 (445)
T KOG2139|consen  308 LTF  310 (445)
T ss_pred             Eee
Confidence            543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=5.3e-12  Score=124.86  Aligned_cols=317  Identities=14%  Similarity=0.125  Sum_probs=179.3

Q ss_pred             CEEEE-EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           18 DYFAI-CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        18 ~~las-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      ++++. -..+|.|.|.|..+.+.+.++...........|+++                           ++++++++.||
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg   58 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG   58 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence            45544 445899999999999999988754433333444444                           78889999999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------CCCeeEEEEc
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS  168 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~  168 (579)
                      .|.++|+.+++.+.++..+  ....++++++||+++++++ .++.+.++|.++.+.++.+...       ...+.++..+
T Consensus        59 ~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   59 TVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             EEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             eEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            9999999999998887543  4578999999999987665 6899999999999998887643       2367788888


Q ss_pred             cCCCEEEEEC---CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce------
Q 008041          169 SDGKMLATAA---GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS------  238 (579)
Q Consensus       169 p~g~~l~~~~---~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~------  238 (579)
                      |....++..-   +.|.+.|....+.+. +............|+|+++|++.+...++.|-++|..+.+.....      
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            9888666553   888888987654432 233344567789999999998887777889999998887543100      


Q ss_pred             ---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          239 ---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                         ....+.|+..-.- ....     ..+...++.-..+.+.+||..+.+.++.++.........  .+|+++    .+.
T Consensus       217 ~~~~~~~~php~~g~v-w~~~-----~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~--thP~s~----~vw  284 (369)
T PF02239_consen  217 HPGPGANFPHPGFGPV-WATS-----GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK--THPDSR----YVW  284 (369)
T ss_dssp             EETTEEEEEETTTEEE-EEEE-----BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE----TT-S----EEE
T ss_pred             cccccccccCCCcceE-Eeec-----cccceecccccCCccccchhhcCeEEEEEECCCCcceee--cCCCCc----cEE
Confidence               0111122221110 0011     223333333334466678877777665543221111111  245555    444


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeecccccee-cccceee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLK-SKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~-~~~~w~~  379 (579)
                      +...-+.   ....+.+.+-... ....++.. ....+..+.|++||+.+-+|.-..+ .+.+++.
T Consensus       285 vd~~~~~---~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  285 VDTFLNP---DADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EE-TT-S---SHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             eeccCCC---CCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            4311110   0223333332222 22222221 2224899999999998745544333 5666654

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=5.2e-11  Score=107.77  Aligned_cols=143  Identities=17%  Similarity=0.309  Sum_probs=108.0

Q ss_pred             EEEECCCeEEEEEccCC-eEEEEec-CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCce--eeEeecCCCCeeE
Q 008041           90 VLGTGGGDVLALAVSAG-QLKWRLS-DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL--LGKFRASTKGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~-~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~--~~~~~~~~~~v~~  164 (579)
                      ++.-..+.|+||....+ +.+..+. .....+..+++-+.+..+|+.-| .-|.|++-|+...+.  ...+.+|...|.|
T Consensus       107 iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac  186 (346)
T KOG2111|consen  107 IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC  186 (346)
T ss_pred             EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE
Confidence            44445678999998844 3332222 12234455555444444555433 568999999976655  4678999999999


Q ss_pred             EEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          165 MAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~-~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ++.+-+|..+|+++  | -|+|||..+|+.+.++...  ...|.+++|+|++.+|++++ +.|++.|+.++...
T Consensus       187 v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  187 VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence            99999999999999  6 5899999999999998643  35699999999999999887 78999999987744

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=126.55  Aligned_cols=235  Identities=9%  Similarity=-0.018  Sum_probs=146.0

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.+||....... .+ ..+...+.+.+|+|||+.++..+   .+..+++||+.+++.... ....+.+..+.|+|||+.
T Consensus       180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence            5999998866543 22 23567899999999999987654   245799999988764332 223334557899999998


Q ss_pred             EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecC
Q 008041          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+...   |  .|++||+.+++.. .+..+...+....|+|||+.|+.++..++.  |+++++.+++..      .+...
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------~lt~~  329 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------RITWE  329 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------EeecC
Confidence            88652   3  6999999888654 444455567889999999998877644444  444466555322      11122


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccccee
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  323 (579)
                      ........|+     |||++|+..+.+   ..|++||+.+++...-.....   .....++|+++    .|+.++.++. 
T Consensus       330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~---~~~p~~SpDG~----~i~~~s~~~~-  396 (429)
T PRK03629        330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFL---DETPSIAPNGT----MVIYSSSQGM-  396 (429)
T ss_pred             CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCC---CCCceECCCCC----EEEEEEcCCC-
Confidence            2223345666     999999887653   368889988875432111111   11223678877    6666665531 


Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008041          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                         ...+.+..  ........+..|...+...+|||
T Consensus       397 ---~~~l~~~~--~~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        397 ---GSVLNLVS--TDGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ---ceEEEEEE--CCCCCeEECccCCCCcCCcccCC
Confidence               11122211  01122234556776777777776

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.49  E-value=4.6e-12  Score=112.92  Aligned_cols=206  Identities=10%  Similarity=0.129  Sum_probs=150.1

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC--eEEE------EecCCCCCCEEEEEEcc-CCCEEEEE
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKW------RLSDCHPGGVSAISFAT-HGSCIYSA  135 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~--~~~~------~~~~~h~~~V~~l~~~~-~~~~l~s~  135 (579)
                      ..+.+.+.|.|......    ..  ++++.+..+++|.+...  +...      .....+.++++++.|+. +-+++.++
T Consensus        96 ~YP~tK~~wiPd~~g~~----pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS  169 (364)
T KOG0290|consen   96 PYPVTKLMWIPDSKGVY----PD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS  169 (364)
T ss_pred             CCCccceEecCCccccC----cc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence            45677888888653211    22  45566678999999842  2211      11235678999999987 66789999


Q ss_pred             eCCCcEEEEeCCCCce---eeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEE
Q 008041          136 GADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMT  206 (579)
Q Consensus       136 ~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~  206 (579)
                      |-|-+..+||++++..   ...+-+|...|..++|...+ ..||+.+  |++++||++..+.-..+   .....+...++
T Consensus       170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS  249 (364)
T ss_pred             cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence            9999999999998733   44577899999999999865 4677766  99999999976543333   22245778889


Q ss_pred             EecCC-CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          207 FSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       207 ~s~~~-~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      |++.. +++++-..+...|.|.|++....    .+..+..+...+..+.|.+    ..+.+|++++.|.++.+||+++.
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCc----ceehhhcCcccccceEecC----CCCceeeecCCcceEEEEecccc
Confidence            98754 57777665567899999998753    3556667777777787772    24578999999999999998654

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.49  E-value=1.7e-14  Score=117.01  Aligned_cols=80  Identities=31%  Similarity=0.462  Sum_probs=76.2

Q ss_pred             eecccCChhhHHHHhhccChhhHHHHHHHHHHHHh-cCCCCcchhHHHHHHHHHHhcccccCC-CChhHHHHHHHHHHHH
Q 008041          484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKVRKK  561 (579)
Q Consensus       484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~-~~~~~~~~~~~wl~~ll~~h~~~l~~~-~~l~~~l~~l~~~~~~  561 (579)
                      ++++.+|+++|++|+++||+.|+.+||+++++.++ +++.+.+++++|+++||+.|++||++. |++.+.|..|++.++.
T Consensus         8 ~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~   87 (110)
T PF04003_consen    8 EVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE   87 (110)
T ss_pred             HHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999888 788899999999999999999999999 9999999999999999


Q ss_pred             hh
Q 008041          562 KL  563 (579)
Q Consensus       562 r~  563 (579)
                      |+
T Consensus        88 ~~   89 (110)
T PF04003_consen   88 RL   89 (110)
T ss_pred             HH
Confidence            99

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.3e-11  Score=125.86  Aligned_cols=242  Identities=15%  Similarity=0.176  Sum_probs=149.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCC--CeE--EEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLK--GQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      -|.++||+++++|+|..||+|.||.--.  +..  .+.+.=|...+                  .++.|.+.        
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V------------------~~L~fS~~--------  262 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV------------------NSLSFSSD--------  262 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc------------------ceeEEecC--------
Confidence            4559999999999999999999996322  110  11111122233                  33333332        


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---C---
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---S---  158 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~---  158 (579)
                       +.+|++|+..|.+.+|...+++  .+++.--.++|..+.++||+.+......|..|.+....+.....++.+   .   
T Consensus       263 -G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  263 -GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             -CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence             8899999999999999999998  467777789999999999999998888999988886543222111111   0   


Q ss_pred             -----CCCeeEEEEcc-----------------------------------------------------CCCEEEEEC--
Q 008041          159 -----TKGISCMAVSS-----------------------------------------------------DGKMLATAA--  178 (579)
Q Consensus       159 -----~~~v~~l~~~p-----------------------------------------------------~g~~l~~~~--  178 (579)
                           .+-.+.++++|                                                     .|.++++..  
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~  419 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR  419 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence                 11223333333                                                     444444432  


Q ss_pred             ----------CeEEEEECCCCee----eEE-eecCCCCEEEEEEec-CCC-EEEEEecCCCeEEEEEcCCCccc-----c
Q 008041          179 ----------GQLKTFNCSDHKK----MQK-FSGHPGAVRFMTFSD-NGK-YVLSSAVGERYIALWRTDGVKKQ-----S  236 (579)
Q Consensus       179 ----------~~i~vwd~~~~~~----~~~-~~~h~~~v~~l~~s~-~~~-~l~s~~~~d~~i~vwd~~~~~~~-----~  236 (579)
                                ..++.|.......    ... ...|...+...+|.+ ... ..++++ .||.+++|-+...+..     .
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-~dg~~KiW~~~~~~n~~k~~s~  498 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-VDGDFKIWVFTDDSNIYKKSSN  498 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-cCCeEEEEEEecccccCcCccc
Confidence                      1344553332211    111 134655555544443 222 567776 7999999998544321     1


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      ..|......+...+...+|+     .||. +++.+.|++|.+||..+.+.
T Consensus       499 W~c~~i~sy~k~~i~a~~fs-----~dGs-lla~s~~~~Itiwd~~~~~~  542 (792)
T KOG1963|consen  499 WTCKAIGSYHKTPITALCFS-----QDGS-LLAVSFDDTITIWDYDTKNE  542 (792)
T ss_pred             eEEeeeeccccCcccchhhc-----CCCc-EEEEecCCEEEEecCCChhh
Confidence            22333333445566677776     7885 55667889999999988533

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.6e-11  Score=126.10  Aligned_cols=171  Identities=11%  Similarity=0.076  Sum_probs=120.0

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|....... .+ ..|...+.+..|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus       183 ~l~~~d~dg~~~~-~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        183 RLAIMDQDGANVR-YL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEEECCCCCCcE-EE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            6889998665543 33 357789999999999999887753   468999999888653 34445667788999999998


Q ss_pred             EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++.. +    ..|++||+.+++. ..+..+........|+|||++++..+..++  .|++||+..++..      .+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~------~lt~~  332 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR------RISFG  332 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE------EeecC
Confidence            7644 3    3688999988764 456666666778999999999887764333  6888887765432      12111


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcC
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQ  282 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~  282 (579)
                      ........|+     |||++|+..+.++   .|.+||..
T Consensus       333 ~~~~~~~~~S-----pdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        333 GGRYSTPVWS-----PRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             CCcccCeEEC-----CCCCEEEEEEcCCCceEEEEEECC
Confidence            2223335566     9999998876532   46666643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=3.1e-11  Score=123.92  Aligned_cols=215  Identities=18%  Similarity=0.187  Sum_probs=139.6

Q ss_pred             CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC---CCeEEEEEc
Q 008041           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV  103 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---~g~i~iwd~  103 (579)
                      ..|.+||...+.. ..+..+...+....|+++                           +..|+..+.   +..|++||+
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD---------------------------G~~lay~s~~~g~~~i~~~dl  233 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPN---------------------------RQEITYMSYANGRPRVYLLDL  233 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCC---------------------------CCEEEEEEecCCCCEEEEEEC
Confidence            3688888754433 344444434443444443                           555666553   356999999


Q ss_pred             cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008041          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (579)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--  178 (579)
                      .+++.. .+ ..+.+.+.+..|+|||+.++ +.+.++.  |++||+.+++. ..+..+........|+|||+.++..+  
T Consensus       234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence            988763 22 34566788999999999865 5555554  78889887765 44555555667899999999888765  


Q ss_pred             ---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041          179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       179 ---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                         ..|++||+.+++. ..+..+...+....|+|||++++..+...  ..|.+||+..+...      .+... ......
T Consensus       311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------~lt~~-~~~~~p  382 (435)
T PRK05137        311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------ILTSG-FLVEGP  382 (435)
T ss_pred             CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------eccCC-CCCCCC
Confidence               2789999876654 34443455667789999999998875322  36888887654321      11111 123445


Q ss_pred             EecCCcccCCCcEEEEEEcC------CeEEEEEcCCce
Q 008041          254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNIE  285 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  285 (579)
                      .|+     |||++|+..+.+      ..++++|+..+.
T Consensus       383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            566     999998776553      257777775543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.47  E-value=3.2e-12  Score=115.52  Aligned_cols=200  Identities=11%  Similarity=0.148  Sum_probs=151.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +||  .|.+|++|+..+|.+-....|.||.....+   ..++++.|..                  .++++.|.+.    
T Consensus        11 ~pi--tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~------------------~vtgvdWap~----   66 (361)
T KOG1523|consen   11 EPI--TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK------------------IVTGVDWAPK----   66 (361)
T ss_pred             Cce--eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc------------------ceeEEeecCC----
Confidence            678  666999999999999999999999887655   4555554443                  4556777765    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEcc-CCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----eE
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVS-AGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----GK  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~-~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~  154 (579)
                           .+.|++|+.|..-++|... .++-... .+..|+..++++.|+|.++.|++|+.-..|.+|-++....-    ..
T Consensus        67 -----snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi  141 (361)
T KOG1523|consen   67 -----SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI  141 (361)
T ss_pred             -----CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh
Confidence                 5569999999999999994 4432211 12358889999999999999999999999999887543221    12


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC-----CC-------------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~-----~~-------------~~~~~~~~~h~~~v~~l~~s~~~~~l  214 (579)
                      -+.+...|++++|+|++-++++|+  +..++|..     ++             |+.+.++....+.|..+.|+|+|..|
T Consensus       142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l  221 (361)
T KOG1523|consen  142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL  221 (361)
T ss_pred             CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence            233566899999999999999988  77777643     21             23344454566889999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCc
Q 008041          215 LSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       215 ~s~~~~d~~i~vwd~~~~~  233 (579)
                      +-.+ .|..+.+-|.....
T Consensus       222 awv~-Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  222 AWVG-HDSTVSFVDAAGPS  239 (361)
T ss_pred             eEec-CCCceEEeecCCCc
Confidence            9998 79999999987764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=8.6e-12  Score=112.01  Aligned_cols=153  Identities=16%  Similarity=0.238  Sum_probs=107.5

Q ss_pred             EEEEEccCCCEEEEEeC---C-------CcEEEEeCC-CCceeeEeec-CCCCeeEEEEccCCCEEEEEC----CeEEEE
Q 008041          121 SAISFATHGSCIYSAGA---D-------GMVCEIDPL-TGSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF  184 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~---d-------~~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~----~~i~vw  184 (579)
                      ..+.|+|+|.+|+.-..   |       +...+|.++ .+..+..+.- ..++|.+++|+|+|+.+++..    +.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46788888887654322   1       234444442 2233444433 345799999999999887653    589999


Q ss_pred             ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC
Q 008041          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                      |++ ++.+.++.  ...++.+.|+|+|++++.++..  .|.|.+||.++.+.     +....+..  ...+.|+     |
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P  153 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P  153 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence            996 66666664  5677899999999999998743  36799999996653     34444443  4567787     9


Q ss_pred             CCcEEEEEEc------CCeEEEEEcCCceeecc
Q 008041          263 AGLYVLAISE------TGVCYIWYGQNIEELRN  289 (579)
Q Consensus       263 ~~~~l~~~~~------dg~i~iwd~~~~~~~~~  289 (579)
                      +|+++++++.      |+.++||+.. |+++..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            9999999864      7899999984 555543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=2.2e-10  Score=113.46  Aligned_cols=192  Identities=18%  Similarity=0.221  Sum_probs=133.8

Q ss_pred             CcEEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      .+++++ -..+|.|.+.|..+.+.+.++..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            445544 4467999999999999988875432 334567899999999999999999999999999999988644 5688


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ++++|||++++++.   +.+.++|.++.+.+++++..       ...+..+..+|.+..++..-.+-+.|.+-|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999999887   89999999999998887543       346778888898886666654457787778776642


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeec
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELR  288 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~  288 (579)
                      .   .+..+ .......-..|+     |++++++++ ..++.|-++|.++++...
T Consensus       163 ~---~~~~i-~~g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  163 L---KVTTI-KVGRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             E---EEEEE-E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             c---ceeee-cccccccccccC-----cccceeeecccccceeEEEeeccceEEE
Confidence            2   12222 223334445666     999987665 457899999999887764

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=5.3e-10  Score=110.91  Aligned_cols=243  Identities=17%  Similarity=0.245  Sum_probs=153.5

Q ss_pred             EEEccCCCEEEEEeC----CCcEEEEECCC--CeEEE--EeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041           11 TSFSPALDYFAICSG----DARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        11 ~~fspdg~~lasg~~----dg~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++++|++++|.++..    +|.|..|++..  +.+..  +......                   ..|  +...+++   
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-------------------~p~--~i~~~~~---   97 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-------------------SPC--HIAVDPD---   97 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-------------------CEE--EEEECTT---
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-------------------CcE--EEEEecC---
Confidence            489999999988876    56888888765  44322  2211111                   111  1111221   


Q ss_pred             ccCCcEEEEEE-CCCeEEEEEccC-CeEEEE--ec----------CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008041           83 KLGSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL  147 (579)
Q Consensus        83 ~~~~~~l~~~~-~~g~i~iwd~~~-~~~~~~--~~----------~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~  147 (579)
                         +.+++++. .+|.|.++++.. +.....  ..          ........++.|+|+|++++++. ....|++|++.
T Consensus        98 ---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~  174 (345)
T PF10282_consen   98 ---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID  174 (345)
T ss_dssp             ---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred             ---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence               66677766 578899999987 443221  11          11235688999999999988765 34579999987


Q ss_pred             CCc--ee--eEeec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeec----C--CCCEEEEEEec
Q 008041          148 TGS--LL--GKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSG----H--PGAVRFMTFSD  209 (579)
Q Consensus       148 ~~~--~~--~~~~~-~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~~~--~~~~~~----h--~~~v~~l~~s~  209 (579)
                      ...  ..  ..+.. .......+.|+|+|+++.+..   +.|.+|++.  +++.  +..+..    .  ......|.++|
T Consensus       175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp  254 (345)
T PF10282_consen  175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP  254 (345)
T ss_dssp             TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred             CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence            654  32  22332 344789999999999988876   799999888  4432  222221    1  12578899999


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEc--CCcee
Q 008041          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNIEE  286 (579)
Q Consensus       210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~  286 (579)
                      ||++|+++...++.|.+|++...... ...+..........+.+.++     |+|++|++++. ++.|.+|++  ++|..
T Consensus       255 dg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  255 DGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             TSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            99999998878889999999543111 11233333334445666777     99999999986 679999975  45554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.9e-11  Score=124.77  Aligned_cols=191  Identities=15%  Similarity=0.188  Sum_probs=126.8

Q ss_pred             eEEEEccCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041            9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         9 l~~~fspdg~~lasg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ...+|||||+.||..+.   +..|.+|++.+|+...... ..              ++    .....|.|.         
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~--------------~~----~~~~~~SPD---------  253 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FP--------------RH----NGAPAFSPD---------  253 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CC--------------CC----cCCeEECCC---------
Confidence            56699999999997653   4579999998886543221 11              11    112445553         


Q ss_pred             CcEEEEE-ECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceeeEeecCC
Q 008041           86 SSLLVLG-TGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~-~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +..|+.. +.+|  .|++||+.+++.. .+. .+...+....|+|||+.|+.++.+ +  .|+.+|+.+++.. .+....
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~  330 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG  330 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC
Confidence            5555544 4455  4999999988765 332 344567899999999998777654 3  4555677666543 334344


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe---EEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY---IALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~---i~vwd~~~  231 (579)
                      ....+..|+|||+.++...     ..|++||+.+++.. .+... .......|+|||++++.++ .++.   +.++++..
T Consensus       331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G  407 (429)
T PRK03629        331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDG  407 (429)
T ss_pred             CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCC
Confidence            4566789999999988765     36899999888643 34322 2334678999999999887 4553   67777755


Q ss_pred             Cc
Q 008041          232 VK  233 (579)
Q Consensus       232 ~~  233 (579)
                      ..
T Consensus       408 ~~  409 (429)
T PRK03629        408 RF  409 (429)
T ss_pred             CC
Confidence            43

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=8.3e-12  Score=113.81  Aligned_cols=251  Identities=16%  Similarity=0.192  Sum_probs=164.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCC-Ce----EEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLK-GQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      -++.|...|.+||+|..+|+|.+|.-.. .+    ...+++.|.....   |.   ..-.....+..+.|.+...     
T Consensus        29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFD---YL---kSleieEKinkIrw~~~~n-----   97 (433)
T KOG1354|consen   29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFD---YL---KSLEIEEKINKIRWLDDGN-----   97 (433)
T ss_pred             eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccc---hh---hhhhhhhhhhhceecCCCC-----
Confidence            3559999999999999999999996432 22    3444554443221   10   1112234667788887653     


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEE-----------------------------------EEecCCCCCCEEEEEEccC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLK-----------------------------------WRLSDCHPGGVSAISFATH  128 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~-----------------------------------~~~~~~h~~~V~~l~~~~~  128 (579)
                        ...+++.+.|.+|++|.+......                                   ..+..+|+-.|.++.++.|
T Consensus        98 --~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   98 --LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             --ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence              677899999999999998743211                                   1123578888999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC-ce--eeEeecCC-----CCeeEEEEccCC-CEEE-EEC-CeEEEEECCCCeeeE----
Q 008041          129 GSCIYSAGADGMVCEIDPLTG-SL--LGKFRAST-----KGISCMAVSSDG-KMLA-TAA-GQLKTFNCSDHKKMQ----  193 (579)
Q Consensus       129 ~~~l~s~~~d~~v~iwd~~~~-~~--~~~~~~~~-----~~v~~l~~~p~g-~~l~-~~~-~~i~vwd~~~~~~~~----  193 (579)
                      +..++++ .|-.|.+|++.-- +.  +..++.+.     .-|++..|+|.. +.++ +.+ |+|++.|++......    
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            9988887 6888999998632 22  22233332     357888999953 3444 344 999999998543211    


Q ss_pred             Ee------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc--------------
Q 008041          194 KF------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA--------------  247 (579)
Q Consensus       194 ~~------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--------------  247 (579)
                      .|            .+--..|..+.|+++|+|+++-.  =-+|++||+......    +.+.+-+.              
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccc
Confidence            11            11124578899999999998742  378999999655432    11111111              


Q ss_pred             --eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          248 --VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       248 --~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                        ....| +|+     .++.++++|+..+..++|+...|.
T Consensus       329 IfdKFec-~~s-----g~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  329 IFDKFEC-SWS-----GNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hhheeEE-EEc-----CCcceEecccccceEEEecCCCCc
Confidence              11222 333     688899999999999999966553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.8e-11  Score=125.55  Aligned_cols=176  Identities=10%  Similarity=0.053  Sum_probs=121.7

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.+||...+... .+ ..+...+.+..|+|||+.++.++.   +..|++||+.+++... +....+...+..|+|||+.
T Consensus       185 ~l~i~D~~g~~~~-~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        185 ALQVADSDGYNPQ-TI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEECCCCCCce-Ee-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            5899998655443 33 346678999999999999888764   3469999998876543 3333445567899999998


Q ss_pred             EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecC
Q 008041          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++.. +    ..|++||+.+++. ..+..+........|+|||++++.++..++.  |+++++.+++..   .+ +.  .
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~l-t~--~  334 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RL-TF--Q  334 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Ee-ec--C
Confidence            7643 2    3799999988864 4555566566788999999998887644444  666676665422   11 11  1


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCceee
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL  287 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~  287 (579)
                      ........|+     |||++|+..+.++   .|.+||+.+++..
T Consensus       335 g~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        335 GNYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CCCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            1222345666     9999998876543   6999999877643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=4.8e-11  Score=122.36  Aligned_cols=213  Identities=14%  Similarity=0.095  Sum_probs=137.3

Q ss_pred             CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC---CeEEEEEc
Q 008041           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV  103 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd~  103 (579)
                      ..|.+||...+. ...+..+...+....|+++                           +..|+..+..   ..|++||+
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl  235 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL  235 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence            368899986443 3334444444444445444                           5666666533   35999999


Q ss_pred             cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008041          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (579)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--  178 (579)
                      .+++... + ..+.+...+..|+|||+.++ +.+.+|  .|++||+.+++.. .+..+.......+|+|||+.++.++  
T Consensus       236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence            8887642 2 23344556889999999865 445555  5999999887654 4444555557789999999888765  


Q ss_pred             -C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041          179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       179 -~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                       |  .|+++|+.+++.. .+..+......++|+|||++++..+..++  .|.+||+.+++..      .+.+... ....
T Consensus       313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------~Lt~~~~-~~~p  384 (433)
T PRK04922        313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------TLTPGSL-DESP  384 (433)
T ss_pred             CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------ECCCCCC-CCCc
Confidence             3  5888888776543 23223334457899999999887653332  6999999876532      1222211 1233


Q ss_pred             EecCCcccCCCcEEEEEEcC---CeEEEEEcCC
Q 008041          254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQN  283 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~  283 (579)
                      .|+     |||++|+..+.+   +.|++++...
T Consensus       385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        385 SFA-----PNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             eEC-----CCCCEEEEEEecCCceEEEEEECCC
Confidence            565     999998877663   3677777754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3.3e-11  Score=123.09  Aligned_cols=176  Identities=18%  Similarity=0.165  Sum_probs=117.6

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|...... ..+ ..+...+.+.+|+|||+.++..+.+   ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus       177 ~L~~~D~dG~~~-~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        177 QLQISDADGQNA-QSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEEECCCCCCc-eEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            577777754333 233 3467789999999999998877643   359999998887543 3333455678999999998


Q ss_pred             EEEE-C--C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--CCccccceeeeeeecC
Q 008041          174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~  246 (579)
                      ++.. +  |  .|+++|+.++. ...+..+........|+|||++++..+..++...+|.+.  ++...   .+ ..  .
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~l-t~--~  326 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---RV-TF--T  326 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---EE-ec--C
Confidence            8754 3  4  46666666554 455655666667789999999988776445666666654  33211   11 11  1


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCceee
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL  287 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~  287 (579)
                      ........|+     |||++|+..+.++   .|.+||+.+++..
T Consensus       327 g~~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        327 GSYNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             CCCcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            1112234566     9999998877654   6999999887543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.6e-11  Score=112.77  Aligned_cols=192  Identities=14%  Similarity=0.263  Sum_probs=133.8

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEE
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCE  143 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~i  143 (579)
                      ..+..-++|++.         -..+++++.|..|++||-.. ++...+...-...|+|++|.|.+.. |+.|+..| |.+
T Consensus        98 ~~dlr~~aWhqH---------~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ici  166 (445)
T KOG2139|consen   98 EIDLRGVAWHQH---------IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICI  166 (445)
T ss_pred             hcceeeEeechh---------hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence            345556777763         34578999999999999887 4433443344567999999996654 77776655 899


Q ss_pred             EeCCCC----ce--------eeEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEE
Q 008041          144 IDPLTG----SL--------LGKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMT  206 (579)
Q Consensus       144 wd~~~~----~~--------~~~~~--~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~  206 (579)
                      |.....    ..        .+.++  +| .+|+++.|.+||..+++++   ..|.|||..++..+.-.....+.++-+.
T Consensus       167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLk  245 (445)
T KOG2139|consen  167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLK  245 (445)
T ss_pred             EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEE
Confidence            975421    11        11122  23 4899999999999999998   6999999999887655544567889999


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      |||||.+|+++. -|+..++|+.......   .-... ... .+...+|+     |.|++|+-... |.=.+|.
T Consensus       246 wSPdgd~lfaAt-~davfrlw~e~q~wt~---erw~l-gsg-rvqtacWs-----pcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  246 WSPDGDVLFAAT-CDAVFRLWQENQSWTK---ERWIL-GSG-RVQTACWS-----PCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             EcCCCCEEEEec-ccceeeeehhccccee---cceec-cCC-ceeeeeec-----CCCCEEEEEEc-CCceEEE
Confidence            999999999987 5999999965443211   01122 222 56677787     99998766554 3334444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.8e-11  Score=113.67  Aligned_cols=190  Identities=10%  Similarity=0.095  Sum_probs=142.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCe-----EEEEecCCCCCCEEEEEEccCCCE-EEEEeCC--CcEEEEeCCCCceeeEeec
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQ-----LKWRLSDCHPGGVSAISFATHGSC-IYSAGAD--GMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d--~~v~iwd~~~~~~~~~~~~  157 (579)
                      +..|++|..+|.+.+|....+.     .+ .+.  -..++..+.-++...+ +++|+..  ..+.+||+...+.+..-+.
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~-~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLI-KLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccce-eee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence            6779999999999999998543     22 221  2256777777776655 5558877  7899999988755544332


Q ss_pred             CC---------CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041          158 ST---------KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       158 ~~---------~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~  223 (579)
                      -.         -.++.+.|-|.  ...|+++.  +.+++||.+.+ +++.+|.--..+++++...|++++++++. .-+.
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~  270 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQ  270 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccch
Confidence            11         25678899887  78899888  89999999976 46888887889999999999999999886 6899


Q ss_pred             EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      +..||++.++...    ..+..-...++.+...     |.+.++++++.|..++|||+++.+.+.
T Consensus       271 l~~FD~r~~kl~g----~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  271 LAKFDLRGGKLLG----CGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             hheecccCceeec----cccCCccCCcceEEEc-----CCCceEEeeccceeEEEeecccchhhh
Confidence            9999999987541    1123333344444444     888999999999999999999866543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=125.33  Aligned_cols=206  Identities=14%  Similarity=0.250  Sum_probs=149.1

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEI  144 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iw  144 (579)
                      .+.|+.|...         +.+|++|+.|-.+.|||+...+.+..+..+|...|.++.|-|  +++.+++|..|..|+++
T Consensus        52 CVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   52 CVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             eecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3456666653         899999999999999999999988888899999999999998  55679999999999999


Q ss_pred             eCCC----------CceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeE----------EeecCCCC
Q 008041          145 DPLT----------GSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQ----------KFSGHPGA  201 (579)
Q Consensus       145 d~~~----------~~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~----------~~~~h~~~  201 (579)
                      |+..          ......+..|...|..|+..|++ +.+.+++  |+|+-||++......          .+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9974          13344577788999999999999 6788887  999999998742211          11112234


Q ss_pred             EEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccc-------------cceeeeee--ec----------CceeEEeEEe
Q 008041          202 VRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQ-------------SASCVLAM--EH----------PAVFMDCRCI  255 (579)
Q Consensus       202 v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~-------------~~~~~~~~--~~----------~~~~~~~~~~  255 (579)
                      ..++.++|... +|++|+ .|-..++||.+...+.             ...|+..+  .|          -......+.|
T Consensus       203 lk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            56889998765 566665 6999999995432110             00111111  11          1122455666


Q ss_pred             cCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      +     |+|.-|++.-..-.|++||+..++..
T Consensus       282 n-----pNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  282 N-----PNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             C-----CCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            6     99988887766669999998877654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=9.2e-12  Score=115.17  Aligned_cols=163  Identities=14%  Similarity=0.168  Sum_probs=126.4

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeEeec-CCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGKFRA-STKGISCMAVSSDGKMLATAA--GQLKTF  184 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~vw  184 (579)
                      .+|.+.|.++.|+.++++|++|+.|..+++|++..      .+++..... |...|.|++|...++.+.+|+  ++|.+.
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            57999999999999999999999999999999753      355555443 447899999999999999998  899999


Q ss_pred             ECCCCeeeEEeecCC---CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCccc
Q 008041          185 NCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD  261 (579)
Q Consensus       185 d~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (579)
                      |+++.+.+..+. |.   +.|..+..+|..+.|++.+ .++.|.+||.+..... ...+.....+... ..+.|.+    
T Consensus       133 DiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~~-~~~~~~AN~~~~F-~t~~F~P----  204 (609)
T KOG4227|consen  133 DIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQNP-ISLVLPANSGKNF-YTAEFHP----  204 (609)
T ss_pred             ecccceeeeeec-ccCcccceeecccCCCCceEEEEe-cCceEEEEeccCCCCC-CceeeecCCCccc-eeeeecC----
Confidence            999998887775 43   5899999999988888887 7999999999886522 1122222233333 3344441    


Q ss_pred             CCCcEEEEEEcCCeEEEEEcCCc
Q 008041          262 DAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       262 ~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      ....+|++.+..|-+-+||....
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             CCceeEEeccccCCCCceeeccc
Confidence            34578888899999999997543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=8e-11  Score=120.29  Aligned_cols=180  Identities=14%  Similarity=0.093  Sum_probs=113.5

Q ss_pred             CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEE--eCCCCceeeEeecCC
Q 008041           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iw--d~~~~~~~~~~~~~~  159 (579)
                      ++.|+..+..   ..|++||+.+++... + ....+.+.+..|+|||+.++ +.+.++...+|  |+..+. ...+..+.
T Consensus       207 G~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  283 (427)
T PRK02889        207 GTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS  283 (427)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence            5566665532   349999999887642 2 22335567899999999876 45677765555  554444 44555555


Q ss_pred             CCeeEEEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008041          160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~  232 (579)
                      .......|+|||+.++..+   |  .|+.+++.+++.. .+..+........|+|||++++..+..++  .|.+||+.++
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            5567789999999888655   4  4555555555432 22222233446789999999987763222  6999999877


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEc
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYG  281 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~  281 (579)
                      +..      .+.... ......|+     |||++|+..+.++   .+++.+.
T Consensus       363 ~~~------~lt~~~-~~~~p~~s-----pdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        363 QVT------ALTDTT-RDESPSFA-----PNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CeE------EccCCC-CccCceEC-----CCCCEEEEEEecCCCEEEEEEEC
Confidence            532      111111 12344566     9999988887644   3445454

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=4.4e-12  Score=122.25  Aligned_cols=207  Identities=18%  Similarity=0.338  Sum_probs=144.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++-|+++  +|+.||.+|++||.|-++.|||.-..+.+..+.                .||.. .+-|..|.|...   
T Consensus        49 H~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------TgHta-NIFsvKFvP~tn---  106 (758)
T KOG1310|consen   49 HTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------TGHTA-NIFSVKFVPYTN---  106 (758)
T ss_pred             ccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeee----------------ccccc-ceeEEeeeccCC---
Confidence            45778666  999999999999999999999998888777663                24433 233555555442   


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-  150 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~-  150 (579)
                          +.++++|..|..|++||+...         +........|...|.-++..|++ +.|.+++.||+++.+|++... 
T Consensus       107 ----nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  107 ----NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             ----CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence                678999999999999999851         22223446799999999999998 679999999999999998632 


Q ss_pred             eeeE---------eecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC--------C----------eeeEEe-ecCC
Q 008041          151 LLGK---------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD--------H----------KKMQKF-SGHP  199 (579)
Q Consensus       151 ~~~~---------~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~--------~----------~~~~~~-~~h~  199 (579)
                      +...         +...--...|+.++|... +|++|+  --.++||.+.        +          .++..| ++|.
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl  262 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL  262 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence            1111         111112567999999665 556665  3689999431        1          122223 2332


Q ss_pred             --------C---CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          200 --------G---AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       200 --------~---~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                              .   -++-+.|+|+|..|+..= ....|+++|+..++..
T Consensus       263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  263 KNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP  308 (758)
T ss_pred             cCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence                    1   145678999998776653 3457999999887643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=4.7e-12  Score=120.49  Aligned_cols=275  Identities=12%  Similarity=0.093  Sum_probs=189.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCC-CCcee--eEeecCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPL-TGSLL--GKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~-~~~~~--~~~~~~~~  160 (579)
                      +..+++|+.|-.|.+||...+.....+..+|...|....|-|.  .+.+++++.||.|++=.+. ++.+.  ..+..|.+
T Consensus       154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g  233 (559)
T KOG1334|consen  154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG  233 (559)
T ss_pred             CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence            8899999999999999999999888888999999999999883  4569999999999987654 33332  33566889


Q ss_pred             CeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEe---ecCCC---CEEEEEEecCCC-EEEEEecCCCeEEEEEcC
Q 008041          161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF---SGHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD  230 (579)
Q Consensus       161 ~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~---~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~  230 (579)
                      +|.-++.-|+.. .|.+++  +.+.-+|++++..-..+   ..+..   ....++..|... .+++++ .|..+++||.+
T Consensus       234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R  312 (559)
T KOG1334|consen  234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR  312 (559)
T ss_pred             ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence            999999999765 455555  78888999887553333   22333   456788888776 566666 79999999987


Q ss_pred             CCcccc------ceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC--Cce----------eecc-c
Q 008041          231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ--NIE----------ELRN-T  290 (579)
Q Consensus       231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~----------~~~~-~  290 (579)
                      .-....      .-|. .-.......|.++.++     .++.-|.+.-.|-.|++|+-.  .|.          .... .
T Consensus       313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY  387 (559)
T KOG1334|consen  313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY  387 (559)
T ss_pred             chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence            654321      0000 0111334567788887     678888888888899999522  120          0111 2


Q ss_pred             CCee--EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc
Q 008041          291 KATK--ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ  368 (579)
Q Consensus       291 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~  368 (579)
                      ++++  ..+.....|.|...    ++++|+..|.|++|+        ......+.-+.+...-|.|+--.|-=..| +|+
T Consensus       388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~--------K~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS  454 (559)
T KOG1334|consen  388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWD--------KKTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS  454 (559)
T ss_pred             cccccccccceeeeccCccc----eEEecCccceEEEEe--------cchhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence            2221  12344445666555    888898877666543        22333333444544467777777877888 999


Q ss_pred             cceecccceee
Q 008041          369 SLLKSKRGRYV  379 (579)
Q Consensus       369 s~d~~~~~w~~  379 (579)
                      +-|..||+|.=
T Consensus       455 Gid~DVKIWTP  465 (559)
T KOG1334|consen  455 GIDHDVKIWTP  465 (559)
T ss_pred             CCccceeeecC
Confidence            99999999953

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=2.4e-09  Score=106.22  Aligned_cols=277  Identities=14%  Similarity=0.160  Sum_probs=165.5

Q ss_pred             EEEEECC----CeEEEEEc--cCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCC--c--eeeE
Q 008041           89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK  154 (579)
Q Consensus        89 l~~~~~~----g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d~~v~iwd~~~~--~--~~~~  154 (579)
                      +++|+..    +.|++|++  .++++...-...-......++++|++++|+++..    ++.|..|++...  +  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4566665    57888888  5555432111123355778899999999999876    568988887653  3  3334


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE--eec-----------CCCCEEEEEEecCCCEEEEE
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--FSG-----------HPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~~~~--~~~-----------h~~~v~~l~~s~~~~~l~s~  217 (579)
                      ..........++++|++++++++.   |.|.++++.. +.....  ...           ......++.|+|+|+++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            443455778899999999999986   8999999987 433222  111           12447899999999999888


Q ss_pred             ecCCCeEEEEEcCCCccc-cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC--Ccee--ecccC
Q 008041          218 AVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIEE--LRNTK  291 (579)
Q Consensus       218 ~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~--~~~~~  291 (579)
                      ......|.+|++...... ........ ....-.+.+.|+     |+++++.+.++ ++.|.+|++.  ++..  +....
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence            766778999999876521 11111222 233334566676     99999888876 7899999887  4321  11111


Q ss_pred             Ce----e-EEeeeccCCcccccccchhhhhcccc-ceecCCceEEEEEeCC-CCCceeEEEecCCCCcEEEeecCCccee
Q 008041          292 AT----K-ILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL  364 (579)
Q Consensus       292 ~~----~-~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (579)
                      ..    . ........++++++    +++++... +.+     .++..+.. ......+.+......-..++++|||++|
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI-----~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l  306 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSI-----SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL  306 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEE-----EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred             eccccccccCCceeEEEecCCC----EEEEEeccCCEE-----EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence            00    0 00111112466666    55554432 111     11122111 1112223333333347899999999999


Q ss_pred             eccccceecccceeee
Q 008041          365 PMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       365 ~~s~s~d~~~~~w~~~  380 (579)
                      .++...++.+.++++.
T Consensus       307 ~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  307 YVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEecCCCeEEEEEEe
Confidence            6666677888888874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.34  E-value=1.4e-10  Score=122.13  Aligned_cols=192  Identities=11%  Similarity=0.069  Sum_probs=127.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------ce
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SL  151 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-------~~  151 (579)
                      +.++++|+.||+|++||.+.-.       ...++ .....++.++.+.+.++.++.++.||.|++.++...       .+
T Consensus      1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred             CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence            5899999999999999987421       11122 224578999999999999999999999999998652       11


Q ss_pred             eeEeecCC-C-CeeEEEEcc-CCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041          152 LGKFRAST-K-GISCMAVSS-DGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       152 ~~~~~~~~-~-~v~~l~~~p-~g~-~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~  223 (579)
                      .+....+. + -|..-++.. ++. .++.+.  +.|..||+++.....++  ....+.|++++.+|.+.++++|. ..|.
T Consensus      1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-s~G~ 1218 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQ 1218 (1431)
T ss_pred             eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-CCce
Confidence            22222222 2 233333433 233 444444  89999999987655444  33457899999999999999987 6899


Q ss_pred             EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCce
Q 008041          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIE  285 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~  285 (579)
                      +-+||++-+...   +.+..++...... ++.+.  +.|.....++++  ..+.|.+|++.+|.
T Consensus      1219 l~lWDLRF~~~i---~sw~~P~~~~i~~-v~~~~--~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPI---LSWEHPARAPIRH-VWLCP--TYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             EEEEEeecCcee---ecccCcccCCcce-EEeec--cCCCCceEEEecccCCCceeeeecccCc
Confidence            999999988644   2333333322222 22221  114445555554  47899999998884

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.33  E-value=4.2e-12  Score=120.14  Aligned_cols=187  Identities=18%  Similarity=0.289  Sum_probs=147.5

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .|+++  .|=.+.+++|.+- ...+.|||- .|..++-++.+. .+..+.|-|.                          
T Consensus       172 tv~Dv--~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~~-~v~rLeFLPy--------------------------  220 (545)
T KOG1272|consen  172 TVRDV--TFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRHI-RVARLEFLPY--------------------------  220 (545)
T ss_pred             hhhhh--hhhcchHHHHhhh-hceEEEecC-CCcEEeehhhcC-chhhhcccch--------------------------
Confidence            46566  7888888888776 457899995 466666555332 2222233222                          


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                       .-+|++++..|-++.-|+.+|+.+..+. .-.+.+..++-+|-+..+-.|...|+|.+|.....+++..+.+|.++|.+
T Consensus       221 -HfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s  298 (545)
T KOG1272|consen  221 -HFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS  298 (545)
T ss_pred             -hheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence             5568888889999999999999987774 35678889999998889999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      |++.|+|+++++++  ..++|||++....+.++.. ..+...++||..| .|+ .| ....|.+|.
T Consensus       299 iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~-~G~~v~iw~  360 (545)
T KOG1272|consen  299 IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LS-YGDHVQIWK  360 (545)
T ss_pred             EEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-ee-cCCeeeeeh
Confidence            99999999999999  8999999999877766654 5667888998776 333 34 456799995

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.32  E-value=1.2e-11  Score=112.02  Aligned_cols=219  Identities=15%  Similarity=0.092  Sum_probs=153.1

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC
Q 008041          122 AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH  198 (579)
Q Consensus       122 ~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h  198 (579)
                      -.+|+|+|+++++++.- ++.+-|..+-+..+.|.. -..|..+.|..|.-+++++.   +.|.+|++...+-..++...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            45799999999999755 788889887776666554 34677899999988888876   69999999999888888888


Q ss_pred             CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe---
Q 008041          199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV---  275 (579)
Q Consensus       199 ~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---  275 (579)
                      ..++.++.|||||+.++..+.-|-.|.+|++.+.+.      ..+.++...+....|.     |||++.+..+.-..   
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~pK~~~kg~~f~-----~dg~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHPKTNVKGYAFH-----PDGQFCAILSRRDCKDY  159 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEecccee------EEecccccCceeEEEC-----CCCceeeeeecccHHHH
Confidence            899999999999988877777788999999998753      3456777777888887     99999888776322   


Q ss_pred             EEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC-CCcEE
Q 008041          276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDIN  354 (579)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~  354 (579)
                      +.++..+....++..+-......                      |+--..||..+..+.+.+.-.  .+..|. -.+..
T Consensus       160 v~i~~c~~W~ll~~f~~dT~Dlt----------------------gieWsPdg~~laVwd~~Leyk--v~aYe~~lG~k~  215 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLT----------------------GIEWSPDGNWLAVWDNVLEYK--VYAYERGLGLKF  215 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCccccc----------------------CceECCCCcEEEEecchhhhe--eeeeeeccceeE
Confidence            22222222333333332222211                      222223444444443322111  112232 24778


Q ss_pred             EeecCCcceeeccccceeccccee
Q 008041          355 LNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       355 ~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      +.|||.|++| +.||.|+.+|+-+
T Consensus       216 v~wsP~~qfl-avGsyD~~lrvln  238 (447)
T KOG4497|consen  216 VEWSPCNQFL-AVGSYDQMLRVLN  238 (447)
T ss_pred             EEeccccceE-Eeeccchhhhhhc
Confidence            8999999999 9999999998754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=5.5e-09  Score=97.04  Aligned_cols=242  Identities=15%  Similarity=0.205  Sum_probs=156.0

Q ss_pred             EEEccCCCEEEEEeC---CCcEEEEECCC--CeEEEE--eccCccccccccccccccccccccccceEEeeecccccccc
Q 008041           11 TSFSPALDYFAICSG---DARIKIWDTLK--GQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus        11 ~~fspdg~~lasg~~---dg~i~vwd~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ++|+|++++|.++..   +|.|..|.++.  |++...  ......                   ..|  ....+++    
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~-------------------~p~--yvsvd~~----   99 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS-------------------PPC--YVSVDED----   99 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC-------------------CCe--EEEECCC----
Confidence            399999999988865   47777776664  554321  111110                   101  1122222    


Q ss_pred             cCCcEEEEEEC-CCeEEEEEccC-CeEEE--EecCCCCCC----------EEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 008041           84 LGSSLLVLGTG-GGDVLALAVSA-GQLKW--RLSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLT  148 (579)
Q Consensus        84 ~~~~~l~~~~~-~g~i~iwd~~~-~~~~~--~~~~~h~~~----------V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~  148 (579)
                        +.+++++.. .|.|.++-++. |.+..  .. ..|.++          +....|.|++++++++.. -..|.+|++..
T Consensus       100 --g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d  176 (346)
T COG2706         100 --GRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD  176 (346)
T ss_pred             --CCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence              666666664 47799999976 33211  11 135544          889999999999988752 33599999998


Q ss_pred             CceeeE---eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-eeeEEeec---------CCCCEEEEEEecCCC
Q 008041          149 GSLLGK---FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGK  212 (579)
Q Consensus       149 ~~~~~~---~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~-~~~~~~~~---------h~~~v~~l~~s~~~~  212 (579)
                      |+....   .-........|.|+|++++.....   ++|-+|..... ..+..++.         .......|..++||+
T Consensus       177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr  256 (346)
T COG2706         177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR  256 (346)
T ss_pred             CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence            764332   112345779999999999998887   89999988773 22333321         134567889999999


Q ss_pred             EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-eEEEEEc--CCcee
Q 008041          213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG--QNIEE  286 (579)
Q Consensus       213 ~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~--~~~~~  286 (579)
                      +|.++-.....|.+|.+...... ...+..........+...++     ++|++|+++.+++ .|.+|..  ++|+.
T Consensus       257 FLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         257 FLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             EEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence            99988766668888887765322 11222223334445556666     9999999998854 7888854  44443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=1.7e-09  Score=111.11  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=118.9

Q ss_pred             CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEeCCCCceeeEeecCC
Q 008041           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~d~--~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +..++.++..   ..|++||+.+++....  ..+...+.+++|+|||+.|+. .+.++  .|++||+.++... .+..+.
T Consensus       201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~  277 (417)
T TIGR02800       201 GQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP  277 (417)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence            6666666543   3699999998865422  235566778999999998764 44444  5899998877543 344444


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC---eEEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~---~i~vwd~~~  231 (579)
                      .......|+|||+.|+..+     ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++ .++   .|.+||+.+
T Consensus       278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG  355 (417)
T ss_pred             CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC
Confidence            4556789999999887654     2788999887764 34444556677889999999998877 454   788889877


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEE
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd  280 (579)
                      +...   .   +..... .....|+     |+|++|+..+.++   .+++++
T Consensus       356 ~~~~---~---l~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       356 GGER---V---LTDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             CCeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEE
Confidence            5422   1   111111 1223455     9999988887754   344444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.9e-09  Score=109.57  Aligned_cols=184  Identities=11%  Similarity=0.061  Sum_probs=115.4

Q ss_pred             EEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEeCCCC---ceeeEeecCC
Q 008041           90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG----MVCEIDPLTG---SLLGKFRAST  159 (579)
Q Consensus        90 ~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~----~v~iwd~~~~---~~~~~~~~~~  159 (579)
                      ++...+|  .|++.++.+++.....  ...+......|+|||+.|+..+. +|    .+..|++..+   +.........
T Consensus       203 y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~  280 (428)
T PRK01029        203 YVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF  280 (428)
T ss_pred             EEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence            3444444  4888999887653222  23445567899999998876553 22    3444776653   3333333333


Q ss_pred             CCeeEEEEccCCCEEEEEC---C--eEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~--~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~  231 (579)
                      ......+|+|||+.|+..+   |  .|+++++.. +.....+..+...+....|+|||++|+..+..+  ..|.+||+.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3446789999999887654   4  466666642 333444555556677899999999988776433  3699999988


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---CCeEEEEEcCCcee
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE  286 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~  286 (579)
                      ++..      .+...........|+     |||++|+..+.   .+.|+++|+.+++.
T Consensus       361 g~~~------~Lt~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        361 GRDY------QLTTSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCeE------EccCCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            7643      121222223345566     99998876543   34788888876654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=9.5e-10  Score=112.96  Aligned_cols=174  Identities=11%  Similarity=0.101  Sum_probs=120.7

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|...+... .+ ..+...+.+..|+|||++++.++.+   ..|++||+.+++... +..+.+.+.+++|+|||+.
T Consensus       171 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       171 ELQVADYDGANPQ-TI-TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            4888888654432 33 2466679999999999998877643   479999998886543 3334556678999999997


Q ss_pred             EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+.. +    ..|++||+.+++. ..+..+........|+|||++|+.++..++  .|++|++.+++..      .+...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~  320 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR  320 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence            7654 3    3699999987754 344445555567899999998887664333  5777787765422      12212


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCce
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE  285 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~  285 (579)
                      ........|+     |+|++|+.++.++   .|.+||+.++.
T Consensus       321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            2223344566     9999999988776   88999987754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.6e-09  Score=111.18  Aligned_cols=175  Identities=11%  Similarity=0.021  Sum_probs=114.6

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|....... .+ ..+...+.+..|+|||+.++..+. ++  .|++||+.+++... +....+.....+|+|||+.
T Consensus       199 ~l~i~d~dG~~~~-~l-~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNEQ-ML-LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCce-Ee-ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence            4777787665442 22 345678899999999999877653 33  58899998876533 2222334457899999998


Q ss_pred             EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+...   |  .|+++|+.+++. ..+..+........|+|||++++..+..++  .|+++|+.+++..   .+ +.  .
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~---~L-t~--~  348 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS---RL-TF--E  348 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EE-ec--C
Confidence            87643   3  689999988764 445556566678899999998887764444  4666677665432   11 11  1


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEc-CC--eEEEEEcCCcee
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIEE  286 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~  286 (579)
                      ........|+     |||++|+..+. ++  .|.++|+.+++.
T Consensus       349 g~~~~~~~~S-----pDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        349 GEQNLGGSIT-----PDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             CCCCcCeeEC-----CCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            1111223555     99999887765 34  566678777653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.9e-09  Score=110.90  Aligned_cols=175  Identities=11%  Similarity=0.042  Sum_probs=119.0

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|...+... .+ ..+...+....|+|||+.|+..+.+   ..|++||+.+++... +....+.+....|+|||+.
T Consensus       180 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAV-TL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCce-EE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence            3788888765543 33 2466789999999999998776543   369999998886543 3333345567899999998


Q ss_pred             EEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041          174 LATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++...     ..|++||+.+++. ..+..+........|+|||+.++..+..++  .|+++++.+++..   .+ ..  .
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~l-t~--~  329 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RV-TF--V  329 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Ee-ec--C
Confidence            87532     3799999988764 345556666677899999998877764444  5777787766532   11 11  1


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcC-C--eEEEEEcCCcee
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE  286 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~  286 (579)
                      ........|+     |+|++|+..+.+ |  .|.+||+.+++.
T Consensus       330 ~~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        330 GNYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            1112234555     999999887653 3  588899887754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.4e-08  Score=94.39  Aligned_cols=276  Identities=14%  Similarity=0.132  Sum_probs=168.8

Q ss_pred             EEEEECC----CeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCC--Ccee--eEe
Q 008041           89 LVLGTGG----GDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLT--GSLL--GKF  155 (579)
Q Consensus        89 l~~~~~~----g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~--~~~~--~~~  155 (579)
                      +++|+..    .-|++|++.+.  +.-....-.+.+.++-++|+|++++|+++..+   |.|..|.+..  |+..  ...
T Consensus         5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~   84 (346)
T COG2706           5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ   84 (346)
T ss_pred             EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence            4455543    44999998843  32211123567889999999999999988654   6677766653  5432  222


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCC----------EEEEEEecCCCEEEEEec
Q 008041          156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGA----------VRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~--~~~~~~h~~~----------v~~l~~s~~~~~l~s~~~  219 (579)
                      .....+.+.++++++|++++++.   |.|.++-++. |..  ...+..|.+.          +....|.|+++++++..-
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            22334558999999999999998   8999999865 432  1122335544          888999999999999876


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCc----eeecccCCee
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI----EELRNTKATK  294 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~~~~  294 (579)
                      .-..|.+|++..++....... .+ .+..-.+-+.|.     |++++..+.++ +++|.+|..+..    +.++.+....
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~-~v-~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPA-EV-KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             CCceEEEEEcccCcccccccc-cc-CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            667899999997765432221 12 333334556676     99999999887 999999987763    2222211110


Q ss_pred             -----EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCC---CceeEEEecCCCCcEEEeecCCcceeec
Q 008041          295 -----ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL---KPSFQKILVNSGEDINLNCSQDGVLLPM  366 (579)
Q Consensus       295 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~~  366 (579)
                           ....+....+++++    +++++..-     .+ .+.+..=...   -..++...-+...-....++++|++|.+
T Consensus       238 ~dF~g~~~~aaIhis~dGr----FLYasNRg-----~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia  307 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGR----FLYASNRG-----HD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA  307 (346)
T ss_pred             cccCCCCceeEEEECCCCC----EEEEecCC-----CC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence                 11111112344544    44444331     01 1111110111   1112222224444678899999999966


Q ss_pred             cccceecccceeeee
Q 008041          367 SQSLLKSKRGRYVQN  381 (579)
Q Consensus       367 s~s~d~~~~~w~~~~  381 (579)
                      +.-++.++.+..+.+
T Consensus       308 a~q~sd~i~vf~~d~  322 (346)
T COG2706         308 ANQKSDNITVFERDK  322 (346)
T ss_pred             EccCCCcEEEEEEcC
Confidence            666667788887753

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=1.8e-10  Score=119.74  Aligned_cols=191  Identities=11%  Similarity=0.131  Sum_probs=148.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      .-+...++.+..+..+.+||...+.......+...                ..-++++.|....       ..-++++|+
T Consensus        96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er----------------~~l~~~~~~g~s~-------~~~~i~~gs  152 (967)
T KOG0974|consen   96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER----------------CTLYSSLIIGDSA-------EELYIASGS  152 (967)
T ss_pred             hhhcceEEEEEcCceEEEEecccCceehhcCCCce----------------EEEEeEEEEeccC-------cEEEEEecc
Confidence            34556788888888999999988877665542211                1122333333211       156789999


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCC
Q 008041           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGK  172 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~  172 (579)
                      .-|.|.+|++...+... .+.+|.+.|.++.|+-||++++++|.|.++++|++.+.+... +.-+|...|..+.|+|+  
T Consensus       153 v~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--  229 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--  229 (967)
T ss_pred             ccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence            99999999998544433 347999999999999999999999999999999999988776 66679999999999998  


Q ss_pred             EEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       173 ~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .+++++  -+.++|+.. ++.+.++.+|. ..+..++..++....++++ .|+.+++|++...
T Consensus       230 ~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhcc
Confidence            788887  799999754 45556788886 4688899988888888887 7999999998654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=5.4e-09  Score=107.53  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=116.4

Q ss_pred             CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCC
Q 008041           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.|+..+.+   ..|++||+.+++... + ....+.+....|+|||+.++ +.+.+|  .|++||+.+++.. .+..+.
T Consensus       210 G~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~  286 (430)
T PRK00178        210 GKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP  286 (430)
T ss_pred             CCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence            5556555433   359999999887642 2 22334456789999999876 444454  6888899877654 344455


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008041          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~  232 (579)
                      .......|+|||+.++..+     ..|+++|+.+++... +...........|+|||++++..+..++  .|.+||+.++
T Consensus       287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            5567789999999887655     368888988776432 2212223345789999999988764343  5788898876


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-C--eEEEEEcC
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ  282 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~  282 (579)
                      +..   .   +...... ....|+     |||++++..+.+ |  .+++++..
T Consensus       366 ~~~---~---lt~~~~~-~~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        366 SVR---I---LTDTSLD-ESPSVA-----PNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CEE---E---ccCCCCC-CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence            532   1   1111111 123455     999998877653 3  46666664

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=2.5e-10  Score=102.32  Aligned_cols=198  Identities=14%  Similarity=0.168  Sum_probs=144.9

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++++.|++.|.-++++..+|.+.+-+-..+....  .++.|..+.....|+..                          +
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~  177 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E  177 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence            5788999999999999999999865555554443  67777766665555433                          2


Q ss_pred             CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceeeEeecCCCCe
Q 008041           86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLT-GSLLGKFRASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v  162 (579)
                      .+++++|+.||.+..||++ .++.+++-.+-|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+.|
T Consensus       178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV  256 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV  256 (339)
T ss_pred             CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence            6889999999999999999 56677665567999999999887 567899999999999999883 55554433 34789


Q ss_pred             eEEEEccCC--CEEEEEC-CeEEEEECCCC--e---eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE-EEEcCCC
Q 008041          163 SCMAVSSDG--KMLATAA-GQLKTFNCSDH--K---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV  232 (579)
Q Consensus       163 ~~l~~~p~g--~~l~~~~-~~i~vwd~~~~--~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~-vwd~~~~  232 (579)
                      ..+.++|.-  .+++++. +-.+|.+.+.+  +   .....+.|.+-+..-.|.....++++++..|+.++ +|-.-++
T Consensus       257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            999999953  3444444 55666666543  2   34445677777777777554557888888888855 7765444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.23  E-value=3.5e-11  Score=120.01  Aligned_cols=203  Identities=12%  Similarity=0.152  Sum_probs=140.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +++..+  ..+|.|+-+|.++.-|. .|-|+... ....-+. |.                ....+....|.+...    
T Consensus        25 ~~~~a~--si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~----------------tpw~vad~qws~h~a----   80 (1081)
T KOG0309|consen   25 GGFNAV--SINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HI----------------TPWQVADVQWSPHPA----   80 (1081)
T ss_pred             Ccccce--eeccccchhhhhhhcCe-EEEeccCCCCCceeee-cc----------------CcchhcceecccCCC----
Confidence            455444  78999999998887764 45565432 2211111 00                012233444544332    


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRAS  158 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~-~~~~~~~~~  158 (579)
                         ..+-++.+...+-.+|++...  ..+.-++.+|...|+++.|+|+.. .+++++.|-.|..||+++. .++..+..-
T Consensus        81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w  157 (1081)
T KOG0309|consen   81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW  157 (1081)
T ss_pred             ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence               345567777777889998643  344455679999999999999665 5889999999999999875 456666655


Q ss_pred             CCCeeEEEEcc-CCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCcc
Q 008041          159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p-~g~~l~~~~-~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ......++|+- ++..+|+.. +.|++||.+.| .++..+++|...|..+.|..-. ..+.+++ .|++|+.||......
T Consensus       158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTT  236 (1081)
T ss_pred             cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeeccccccc
Confidence            56678899987 455566655 78999999975 5688889999999999997532 2455665 799999999887653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=2e-09  Score=104.82  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=91.0

Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      ++++.++....+...+. ..++|.++.|+|+|+-++++.    ..+.+||++. +.+..|.  .++=+++-|+|.|++++
T Consensus       252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~--egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP--EGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC--CCCccceEECCCCCEEE
Confidence            45555554222222222 467999999999999888876    5899999864 4555553  56778899999999999


Q ss_pred             EEecCC--CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc------CCeEEEEEcC
Q 008041          216 SSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQ  282 (579)
Q Consensus       216 s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~  282 (579)
                      .+|.++  |.+-+||..+.+..     ......  ..+...|+     |||.++++++.      |+.++||+..
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a~--~tt~~eW~-----PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKAA--NTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EeecCCCCCceEEEeccchhhc-----cccccC--CceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEec
Confidence            988643  68999999986543     232222  23455666     99999999875      7889999864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=2.8e-10  Score=110.78  Aligned_cols=192  Identities=14%  Similarity=0.131  Sum_probs=142.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +|+.-.--|.+++....|.-++++.|+.+..|....+.++.+..++.                           ..+|++
T Consensus       140 ~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla~  192 (703)
T KOG2321|consen  140 KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLAC  192 (703)
T ss_pred             cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc---------------------------cceEEe
Confidence            45443322333444456788899999988877755555544444333                           788999


Q ss_pred             EECCCeEEEEEccCCeEEEEec-----CCCCC-----CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCC
Q 008041           92 GTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTK  160 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~-----~~h~~-----~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~  160 (579)
                      |+.+|.|-.||.++...+..+.     ..|.+     .|+++.|+.+|-.+++|+.+|.|.+||++..+++..-. +..-
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~  272 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL  272 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence            9999999999999876554432     22333     39999999999999999999999999999888765432 2233


Q ss_pred             CeeEEEEccC--CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          161 GISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       161 ~v~~l~~~p~--g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      +|..+.|.+.  ++.+++.. ..++|||-.+|+....+. ....++.+++-|++-.++++- ++..+..|-+..-
T Consensus       273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~L  345 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPSL  345 (703)
T ss_pred             ceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEec-CCCcceeEEcccc
Confidence            8999999875  56788888 899999999999887776 345699999999998888875 5666666665543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=6.7e-09  Score=106.53  Aligned_cols=181  Identities=14%  Similarity=0.081  Sum_probs=112.7

Q ss_pred             CcEEEEEEC-CC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCCc--EEEEeCCCCceeeEeecCC
Q 008041           86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~-~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~d~~--v~iwd~~~~~~~~~~~~~~  159 (579)
                      +..|+..+. ++  .|++||+.+++.....  ...+......|+|||+.|+. .+.++.  |+++|+.+++.. .+..+.
T Consensus       229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~  305 (448)
T PRK04792        229 GRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR  305 (448)
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence            555655543 33  5999999888753221  12233457899999998765 455664  888898877643 344455


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008041          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~  232 (579)
                      ......+|+|||+.++..+     ..|+++|+.+++... +..+........|+|||++++..+..++  .|.++|+.++
T Consensus       306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            5667889999999887655     368888988776433 2212222345789999999888764444  4555677766


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CC--eEEEEEcC
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQ  282 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~  282 (579)
                      +..   .   +..... .....|+     |||++|+..+. +|  .+++++.+
T Consensus       385 ~~~---~---lt~~~~-d~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        385 AMQ---V---LTSTRL-DESPSVA-----PNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence            432   1   111111 1112455     99998877665 33  36677763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.21  E-value=1.3e-08  Score=98.22  Aligned_cols=327  Identities=12%  Similarity=0.034  Sum_probs=186.2

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|||.|.||++.... .|.+|+...+..+..+..  ..+....|++.   +     .--..|....-.    ....-+
T Consensus        37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~---~-----kYL~tw~~~pi~----~pe~e~  101 (561)
T COG5354          37 YVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPN---E-----KYLVTWSREPII----EPEIEI  101 (561)
T ss_pred             heeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcc---c-----ceeeeeccCCcc----Chhhcc
Confidence            34999999999987765 489998877765555542  22333334433   0     011122211100    000001


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCC--EE-EEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eEeecC-CCCeeE
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRAS-TKGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~-~~~v~~  164 (579)
                      .=-+.+..+.+||+.+|..+..+. +-..+  .+ -+.|+.+..+++-. -...++++++ ++... .-+..- ...|..
T Consensus       102 sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d  178 (561)
T COG5354         102 SPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILD  178 (561)
T ss_pred             CCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceee
Confidence            111223369999999999987663 33333  44 67888888876544 2345899997 33221 112211 247888


Q ss_pred             EEEccCCC--EEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec----------CCCeEE
Q 008041          165 MAVSSDGK--MLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------GERYIA  225 (579)
Q Consensus       165 l~~~p~g~--~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------~d~~i~  225 (579)
                      ..|+|.|+  .|+.=.       +.+++|.+..+..+.+-.-....=..+.|.+.|++++.-..          ++..++
T Consensus       179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy  258 (561)
T COG5354         179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY  258 (561)
T ss_pred             EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence            89999654  344321       68999999876665443222222246788888887755321          234578


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCC
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (579)
                      ++++......     ... .....+...+|.     |.++.+++.+  .+-.+.+||++.. ......+....   ...|
T Consensus       259 l~~~~e~~i~-----V~~-~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rN---T~~f  323 (561)
T COG5354         259 LLRITERSIP-----VEK-DLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRN---TIFF  323 (561)
T ss_pred             EEeecccccc-----eec-cccccceeeeec-----ccCCceeEEecccccceeecccccc-eEEecCCcccc---cccc
Confidence            8888754322     111 334455667776     8888777666  5788999998765 22222221111   1236


Q ss_pred             cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc--c----ceecccce
Q 008041          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ--S----LLKSKRGR  377 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~--s----~d~~~~~w  377 (579)
                      +|..+    +|+.+.++..    .|.+.+..-...+.+...+.+.  ...-+.|||||+|+ .+.  |    .|..+++|
T Consensus       324 sp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~Dn~i~l~  392 (561)
T COG5354         324 SPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVDNSIKLW  392 (561)
T ss_pred             cCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccCcceEEE
Confidence            77777    7888888753    3444444332222222233322  23456699999987 332  2    38899999


Q ss_pred             eee
Q 008041          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      ++.
T Consensus       393 ~v~  395 (561)
T COG5354         393 DVY  395 (561)
T ss_pred             Eec
Confidence            995

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=6.8e-09  Score=105.64  Aligned_cols=197  Identities=16%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             eEEEEccCCCE--EEEEe-CCC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDY--FAICS-GDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~--lasg~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.-+|||||+.  ++..+ .+|  .|.+.++.+|+.... ....+...                  ...|.|.       
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~------------------~p~wSPD-------  241 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQL------------------MPTFSPR-------  241 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCcc------------------ceEECCC-------
Confidence            45589999975  33233 343  577778887764332 21111111                  2334433       


Q ss_pred             cCCcEEEEEE-CCC--eEEE--EEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEE--eCCC-Ccee
Q 008041           84 LGSSLLVLGT-GGG--DVLA--LAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL  152 (579)
Q Consensus        84 ~~~~~l~~~~-~~g--~i~i--wd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iw--d~~~-~~~~  152 (579)
                        +..|+..+ .+|  .+++  |++..+.  ....+..++.......+|+|||+.|+..+ .+|...+|  ++.. +...
T Consensus       242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence              55555544 233  3444  6766531  22233333334456789999999877665 46654444  5432 2334


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEE
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA  225 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~--d~~i~  225 (579)
                      ..+..+...+....|+|||+.|+...     ..|++||+.+++.. .+......+....|+|||+.|+..+..  ...|+
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            44554555678899999999888764     47999999988654 343334456789999999988765432  34688


Q ss_pred             EEEcCCCcc
Q 008041          226 LWRTDGVKK  234 (579)
Q Consensus       226 vwd~~~~~~  234 (579)
                      +|++..++.
T Consensus       399 ~vdl~~g~~  407 (428)
T PRK01029        399 LISLITKKT  407 (428)
T ss_pred             EEECCCCCE
Confidence            888877653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=4.8e-09  Score=102.31  Aligned_cols=197  Identities=19%  Similarity=0.343  Sum_probs=135.6

Q ss_pred             CcccceEEEEccCC--CEEEE-----EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041            4 SNIRDILTSFSPAL--DYFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         4 ~~V~~l~~~fspdg--~~las-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      ..|..+  ++||.+  .++|+     +|.-+.|+||..-.+....       .+.+        ++....+...+.|...
T Consensus       166 ~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~--------ksFFkadkvqm~WN~~  228 (566)
T KOG2315|consen  166 SGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVAN--------KSFFKADKVQMKWNKL  228 (566)
T ss_pred             cceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhh--------ccccccceeEEEeccC
Confidence            345444  777764  34553     3445678888765222111       1111        1222334456777654


Q ss_pred             ccccccccCCcEEEEEECC-----------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 008041           77 DRKKKRKLGSSLLVLGTGG-----------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCE  143 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~-----------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~d~~v~i  143 (579)
                      .        ..+|++++.+           .++++++++...+...+  ...++|.++.|+|+|+.|+++  -.-..+.+
T Consensus       229 g--------t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  229 G--------TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             C--------ceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence            3        4455555432           23888888855555444  357899999999999887655  45668999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008041          144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ||++ ++.+..|.  .++-+++-|+|.|++++.++     |.|-+||+.+.+++..+..-.  -+-+.|+|||++|+++.
T Consensus       299 fnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  299 FNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             EcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEe
Confidence            9974 77766664  56778999999999999987     799999999998888887543  34579999999999987


Q ss_pred             cC-----CCeEEEEEcCCC
Q 008041          219 VG-----ERYIALWRTDGV  232 (579)
Q Consensus       219 ~~-----d~~i~vwd~~~~  232 (579)
                      ..     |+.++||+....
T Consensus       374 TaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  374 TAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ccccEEecCCeEEEEecCc
Confidence            43     678999998765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=2.7e-08  Score=100.60  Aligned_cols=224  Identities=15%  Similarity=0.135  Sum_probs=142.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+..+++++.+|.|.-+|..+|+.+..+........     .+            .            ..+..+++++.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-----~p------------~------------v~~~~v~v~~~~  114 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-----GV------------G------------ADGGLVFVGTEK  114 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-----ce------------E------------EcCCEEEEEcCC
Confidence            356788888899999999999998877653221000     00            0            015678899999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD  170 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~  170 (579)
                      |.++.+|..+|+.+++....  +.+.+.-.. .+..++.++.++.++.||..+|+.+..+......+     .+..+. +
T Consensus       115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~  190 (377)
T TIGR03300       115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D  190 (377)
T ss_pred             CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence            99999999999998776322  223221111 34567778889999999999999887765433211     111222 3


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeecCC----CC------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GA------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~----~~------v-~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      + .++.+.  +.+..+|.++|+.+.+.....    ..      + ....+  .+..++.++ .++.+..||..+++..  
T Consensus       191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~--  264 (377)
T TIGR03300       191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL--  264 (377)
T ss_pred             C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence            4 444544  899999999998765432110    00      0 11112  234666666 6899999999888643  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                         .......  .....       .++..+++++.||.++.+|..+++.+...
T Consensus       265 ---W~~~~~~--~~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       265 ---WKRDASS--YQGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             ---EeeccCC--ccCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence               2222111  01111       24577888889999999999999877544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.16  E-value=1.6e-08  Score=97.62  Aligned_cols=306  Identities=13%  Similarity=0.137  Sum_probs=184.2

Q ss_pred             cccceEEEEccCCCEEEEEeCCC---------------cEEEEECCCCeEEEEeccCccccccccccccccccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT   69 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (579)
                      .|+.+  .|||+++||.+-+..+               .+.|||..+|..+..|.....+               .....
T Consensus        73 ~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------~~~Wp  135 (561)
T COG5354          73 DVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------YLGWP  135 (561)
T ss_pred             Cceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------ccccc
Confidence            46555  8999999999876433               4999999999999888654322               01122


Q ss_pred             eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCE--EEE-----EeCCCcE
Q 008041           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSC--IYS-----AGADGMV  141 (579)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~--l~s-----~~~d~~v  141 (579)
                      .+.|...+         .+++ --....++|+++ ++... ..+..-....|....|+|.++.  |+.     .+.++++
T Consensus       136 ~~k~s~~D---------~y~A-Rvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~  204 (561)
T COG5354         136 VLKFSIDD---------KYVA-RVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMV  204 (561)
T ss_pred             eeeeeecc---------hhhh-hhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence            33343332         1222 124456899997 43321 1111112356889999996543  443     3578899


Q ss_pred             EEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEe
Q 008041          142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s  208 (579)
                      ++|.+..++.+.+-.-.+..=..+.|++.|+++++-.             ..+++++++... +....+..++|....|.
T Consensus       205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~  283 (561)
T COG5354         205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWE  283 (561)
T ss_pred             EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeec
Confidence            9999987776655322222335788999998876521             478899887433 33333668999999999


Q ss_pred             cCCCEEEEEe-cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCc
Q 008041          209 DNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNI  284 (579)
Q Consensus       209 ~~~~~l~s~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~  284 (579)
                      |.++.+++.+ ..+-.+.++|++..-      .+.  .+...-....|+     |.+++++.++.|   |.+.+||....
T Consensus       284 p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~--~Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         284 PLSSRFAVISGYMPASVSVFDLRGNL------RFY--FPEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             ccCCceeEEecccccceeecccccce------EEe--cCCccccccccc-----CcccEEEEecCCccccceEEeccCCc
Confidence            9988776654 577889999998862      122  233333445566     999999987764   68999997665


Q ss_pred             eeec-ccCCeeEEeeeccCCcccccccchhhhhccccceecCCce--EEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008041          285 EELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASV--HTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG  361 (579)
Q Consensus       285 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (579)
                      -... ......-..+   .+++++.    ++.++...-..+. |.  .++-.+|..           .+..+.+.|.|.|
T Consensus       351 f~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~-Dn~i~l~~v~g~~-----------~fel~~~~W~p~~  411 (561)
T COG5354         351 FKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRV-DNSIKLWDVYGAK-----------VFELTNITWDPSG  411 (561)
T ss_pred             eEEEEEeecCCceEe---eccCCce----EEEecCCCccccc-CcceEEEEecCch-----------hhhhhhccccCCc
Confidence            4432 2322222222   2566665    4443333221122 22  222233322           1256777888989


Q ss_pred             ceeecccccee
Q 008041          362 VLLPMSQSLLK  372 (579)
Q Consensus       362 ~~l~~s~s~d~  372 (579)
                      ++. .+.|.+.
T Consensus       412 ~~~-ttsSs~~  421 (561)
T COG5354         412 QYV-TTSSSCP  421 (561)
T ss_pred             ccc-eeeccCC
Confidence            888 4444343

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=2.4e-07  Score=89.73  Aligned_cols=224  Identities=13%  Similarity=0.096  Sum_probs=149.0

Q ss_pred             CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC----------CC
Q 008041           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG----------GG   96 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~----------~g   96 (579)
                      ++|.|.|..+++.+..+.....+..  .++++                           +..++++..          ++
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~~spD---------------------------g~~lyva~~~~~R~~~G~~~d   77 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP--VVASD---------------------------GSFFAHASTVYSRIARGKRTD   77 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce--eECCC---------------------------CCEEEEEeccccccccCCCCC
Confidence            8999999999999888764332221  13333                           555666555          67


Q ss_pred             eEEEEEccCCeEEEEecCCC------CCCEEEEEEccCCCEEEEEe-C-CCcEEEEeCCCCceeeEeecCC---------
Q 008041           97 DVLALAVSAGQLKWRLSDCH------PGGVSAISFATHGSCIYSAG-A-DGMVCEIDPLTGSLLGKFRAST---------  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~~-~-d~~v~iwd~~~~~~~~~~~~~~---------  159 (579)
                      .|.+||+.+.+.+.++.-+-      ......++++|||++++... . +..|.+.|+.+++.+..+....         
T Consensus        78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e  157 (352)
T TIGR02658        78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN  157 (352)
T ss_pred             EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence            79999999999987774221      12344789999999988776 3 7899999999887665443110         


Q ss_pred             ---------C-------------CeeEE--------------EEcc-CCCEEEEEC-CeEEEEECCCC-----eeeEEee
Q 008041          160 ---------K-------------GISCM--------------AVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFS  196 (579)
Q Consensus       160 ---------~-------------~v~~l--------------~~~p-~g~~l~~~~-~~i~vwd~~~~-----~~~~~~~  196 (579)
                               +             .....              .|.+ +|+.+.+.. |.|++.|+...     +.+..+.
T Consensus       158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~  237 (352)
T TIGR02658       158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFT  237 (352)
T ss_pred             CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecc
Confidence                     0             01111              1223 777777766 99999995432     2232221


Q ss_pred             -------cCCCCEEEEEEecCCCEEEEEec---------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcc
Q 008041          197 -------GHPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV  260 (579)
Q Consensus       197 -------~h~~~v~~l~~s~~~~~l~s~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                             ...+.+.-++++|+++.++....         ..+.|.++|..+.+..     ..+.-.. ....+.++    
T Consensus       238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-----~~i~vG~-~~~~iavS----  307 (352)
T TIGR02658       238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-----RKIELGH-EIDSINVS----  307 (352)
T ss_pred             ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-----EEEeCCC-ceeeEEEC----
Confidence                   12344556999999998887431         1257999999887743     3333222 33455676    


Q ss_pred             cCCCc-EEEEEE-cCCeEEEEEcCCceeeccc
Q 008041          261 DDAGL-YVLAIS-ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       261 ~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  290 (579)
                       ||++ +|++.+ .++.|.++|..+++.++..
T Consensus       308 -~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       308 -QDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             -CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             9999 888777 4889999999999988766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=7.1e-08  Score=93.41  Aligned_cols=265  Identities=14%  Similarity=0.054  Sum_probs=148.7

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceeeEeecCCC-----
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK-----  160 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~-----  160 (579)
                      +.|.+.|..+++.+..+..+....  .+ ++|||+.++.+..          +..|.+||..+++.+..+.....     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            889999999999987776554333  34 9999999887765          78999999999999988774322     


Q ss_pred             --CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 --~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                        ....++++|||+++++..    +.|.+.|+.+++.+.++.--. ...-... ++..+++.+  .|+......+.....
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t-~e~~~~~~~--~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT-ANDTFFMHC--RDGSLAKVGYGTKGN  179 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe-cCCccEEEe--ecCceEEEEecCCCc
Confidence              234789999999999876    799999999999998886422 1111222 222233332  255544444333221


Q ss_pred             ccceeeeeeecC-ce--eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce-----eecccCCe------eEEeeec
Q 008041          235 QSASCVLAMEHP-AV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-----ELRNTKAT------KILSSSE  300 (579)
Q Consensus       235 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~------~~~~~~~  300 (579)
                      .. .....+.+. ..  ..+-..+.     .+|+++.+..+ |+|++.|+....     .+......      +......
T Consensus       180 ~~-~~~~~vf~~~~~~v~~rP~~~~-----~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~  252 (352)
T TIGR02658       180 PK-IKPTEVFHPEDEYLINHPAYSN-----KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ  252 (352)
T ss_pred             eE-EeeeeeecCCccccccCCceEc-----CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence            10 000111011 00  00001121     38888877776 999999954332     22111000      0000000


Q ss_pred             cCCcccccccchhhhhccc---cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccc
Q 008041          301 DVNSKSQKSATAAIFAAKL---QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRG  376 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~  376 (579)
                      ..+.++++    .++.+..   .+.=......+++.+-. .......+.. ...+..+++||||+ +|.++...++.+.+
T Consensus       253 ia~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~~-t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       253 VAYHRARD----RIYLLADQRAKWTHKTASRFLFVVDAK-TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             EEEcCCCC----EEEEEecCCccccccCCCCEEEEEECC-CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            11333444    2222111   11111112356666532 2333333332 23789999999999 77445545777777


Q ss_pred             eeee
Q 008041          377 RYVQ  380 (579)
Q Consensus       377 w~~~  380 (579)
                      -++.
T Consensus       327 iD~~  330 (352)
T TIGR02658       327 FDAE  330 (352)
T ss_pred             EECc
Confidence            7764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=8e-08  Score=107.81  Aligned_cols=250  Identities=11%  Similarity=0.065  Sum_probs=148.5

Q ss_pred             EEEccC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fspd-g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++++++ |+++++-+..++|++||.. |..+..+.+.. .....-.+    ...++.. ...+++.+.         ++.
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~----~~a~f~~-P~GIavd~~---------gn~  637 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSF----EDATFNR-PQGLAYNAK---------KNL  637 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCch----hccccCC-CcEEEEeCC---------CCE
Confidence            378875 5566666678899999975 55444443211 00000000    0011111 123333332         444


Q ss_pred             EEEEEC-CCeEEEEEccCCeEEEEecC-CC---------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008041           89 LVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        89 l~~~~~-~g~i~iwd~~~~~~~~~~~~-~h---------------~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~  150 (579)
                      |+++.. ++.|+++|..++... .+.. +.               -...++++|+| ++..+++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            555554 456999998877643 2210 00               12346899999 55556666788999999987764


Q ss_pred             eeeEeecC---------------CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec-------------C-
Q 008041          151 LLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-------------H-  198 (579)
Q Consensus       151 ~~~~~~~~---------------~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~-------------h-  198 (579)
                      .. .+.+.               -.....++++|+|+.++++.   +.|++||+.++.......+             + 
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            32 22211               12456799999998666655   7999999987653211100             0 


Q ss_pred             -------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-----------cCceeEEeEEecCCcc
Q 008041          199 -------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGV  260 (579)
Q Consensus       199 -------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  260 (579)
                             -.....++++++|..+++-. .++.|++||..++...   .+....           ..-.....++++    
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd----  867 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALG----  867 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEe----
Confidence                   01235789999998766665 7899999999876432   111000           000123445665    


Q ss_pred             cCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          261 DDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       261 ~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                       ++|+.+++-+.+++|++||+.+++.
T Consensus       868 -~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        868 -ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -CCCCEEEEECCCCEEEEEECCCCcc
Confidence             8999888888899999999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=3.1e-10  Score=123.60  Aligned_cols=182  Identities=21%  Similarity=0.349  Sum_probs=139.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++.=+|...+.+||+.||.|++|.+..++.+..+.... ..+....|+..                           ++
T Consensus      2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---------------------------Gn 2264 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---------------------------GN 2264 (2439)
T ss_pred             eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---------------------------CC
Confidence            334667778899999999999999999998887776332 33333444433                           77


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCC-C--ceeeEeecCCCC
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLT-G--SLLGKFRASTKG  161 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~d~~v~iwd~~~-~--~~~~~~~~~~~~  161 (579)
                      .+.++..||.+.+|.+...-.  ...+.|+...+++.|-.  ..+++++   .++.+.+||..- +  ..+.  ++|.+.
T Consensus      2265 k~~i~d~dg~l~l~q~~pk~~--~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASPKPY--TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred             ceeeeccCCceeecccCCcce--eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence            789999999999999883222  33367999999999965  5566654   578999999542 2  2333  789999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ++++++-|.-+.+++|+  |.|++||++..+.+.+++.         ++ ...++++++ ..|.++||++.....
T Consensus      2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccch
Confidence            99999999999999999  9999999998887766654         33 456788877 699999999988653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=1.7e-09  Score=112.63  Aligned_cols=184  Identities=13%  Similarity=0.138  Sum_probs=144.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      ...+++++.+..+.+||...+....++.  +...+     .-+.++++.-++++|+.-+.|.+|+....+.-..+.+|++
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            6679999999999999999887765553  33322     2334566777899999999999999874433335889999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      .|.++.++.||+++++.+  .++++|++++.+... +.-+|+..|..+.|.|+  ++++++ .|.+.++|+....+..  
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~--  251 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE--  251 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh--
Confidence            999999999999999998  899999999988765 66789999999999998  788887 8999999976655432  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                         .-..|...-+......     ++...+++++.||.+++|+....
T Consensus       252 ---~y~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  252 ---VYDEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ---hhhhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhcc
Confidence               1223444445555554     67788899999999999996543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=1.4e-08  Score=99.88  Aligned_cols=188  Identities=14%  Similarity=0.179  Sum_probs=147.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCC--CCCCEEEEEEc------c--------------CCCEEEEEeCCCcEEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE  143 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~------~--------------~~~~l~s~~~d~~v~i  143 (579)
                      ..+++..+.||.+++||...++....+...  -++..++..|.      |              +...++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            678999999999999999999886655321  12334444442      1              2235777888999999


Q ss_pred             EeCCCCceeeEee--cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041          144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       144 wd~~~~~~~~~~~--~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      |++..|+....+.  .|.+.|.++.++.+-..|.+++  +.+..|+..+.+.++.+.+....+.+++.+|||..+++++ 
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            9999999888776  5888999999999888999988  7999999999999999999999999999999999998864 


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEE-cCCeEEEEEcC
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQ  282 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~iwd~~  282 (579)
                        +.|++||+.+.+     .+..+.++...++++.|... ++. -|.+++++. .+.-+.+|-..
T Consensus       164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEe-ccccccceeeeccccccceeEEEEE
Confidence              689999999987     45778888888888888621 001 166666654 45667777543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.10  E-value=1.6e-08  Score=92.76  Aligned_cols=232  Identities=19%  Similarity=0.275  Sum_probs=150.9

Q ss_pred             cCCCEEEEEeCCCcEEEEE-CCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041           15 PALDYFAICSGDARIKIWD-TLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        15 pdg~~lasg~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      |-.+-+.+.+.|.+++||- .+.++.-..+.                 -....+++++.+.+.         ...|++|-
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------~~mP~~~~~~~y~~e---------~~~L~vg~   87 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------HYMPSPCSAMEYVSE---------SRRLYVGQ   87 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhh-----------------hhCCCCceEeeeecc---------ceEEEEEE
Confidence            3344577889999999993 44444332221                 011224455555443         56689999


Q ss_pred             CCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041           94 GGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        94 ~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      .+|++.-+.+...-   ...+....|...|..+-|+....++++++.|..+.---.+.+..+..+.- ....+++.+.-.
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~  166 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL  166 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE
Confidence            99999988876432   12233457999999999999889999999998775444455544332211 111122222211


Q ss_pred             CCEEEEEC--CeEEEEE--CCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          171 GKMLATAA--GQLKTFN--CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       171 g~~l~~~~--~~i~vwd--~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                        +...|.  |.|....  ...-..+.++.+|.+.+.++.|.|..+.++++. .|..+.+||+...+..   . ..+..+
T Consensus       167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~---~-~el~gh  239 (404)
T KOG1409|consen  167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT---A-YELQGH  239 (404)
T ss_pred             --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce---e-eeeccc
Confidence              344444  5544433  344567889999999999999999999999987 6999999999877644   1 223333


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      ...+..++..     +--+.+.+++.||.|.+||.+..+
T Consensus       240 ~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  240 NDKVQALSYA-----QHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhhhh-----hhheeeeeccCCCeEEEEecccee
Confidence            3333444443     556889999999999999976543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.07  E-value=1.5e-07  Score=103.56  Aligned_cols=235  Identities=13%  Similarity=0.202  Sum_probs=153.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +.+.|-++..-++.+..+|.|.+.    +..+.....                   .|.....+.++.|.|.        
T Consensus        79 vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~-------------------VG~vd~GI~a~~WSPD--------  131 (928)
T PF04762_consen   79 VSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI-------------------VGSVDSGILAASWSPD--------  131 (928)
T ss_pred             EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE-------------------EEEEcCcEEEEEECCC--------
Confidence            777999999999999999999988    444333221                   1444667888889886        


Q ss_pred             CCcEEEEEECCCeEEEEEcc----C---------C--eEE--------EEe------------cC--------C---CCC
Q 008041           85 GSSLLVLGTGGGDVLALAVS----A---------G--QLK--------WRL------------SD--------C---HPG  118 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~----~---------~--~~~--------~~~------------~~--------~---h~~  118 (579)
                       ..++++.+.+|++.+.+-.    .         |  +.+        .++            ..        +   +.+
T Consensus       132 -~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd  210 (928)
T PF04762_consen  132 -EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD  210 (928)
T ss_pred             -cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence             6789999999997775432    0         0  000        000            00        0   223


Q ss_pred             CEEEEEEccCCCEEEEEeC---C---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECC
Q 008041          119 GVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCS  187 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~---d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~  187 (579)
                      .-..++|..||.+|++.+.   .   ..+++|+ ++|..-.+-..-.+-=.+++|.|.|+++|+..     ..|.+|. +
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-r  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-R  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-c
Confidence            4567899999999988764   2   5799999 45776555444344446789999999999986     3566665 5


Q ss_pred             CCeeeEEee----cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC
Q 008041          188 DHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       188 ~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      +|-....|.    .....|..+.|++|+..|+... .|. |.+|...+..-- .+.......... ...+.|++    .+
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWY-LKqei~~~~~~~-~~~~~Wdp----e~  360 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWY-LKQEIRFSSSES-VNFVKWDP----EK  360 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEE-EEEEEEccCCCC-CCceEECC----CC
Confidence            665444443    3456799999999999999875 454 999998876422 001111212222 22356651    25


Q ss_pred             CcEEEEEEcCCeEEEEEc
Q 008041          264 GLYVLAISETGVCYIWYG  281 (579)
Q Consensus       264 ~~~l~~~~~dg~i~iwd~  281 (579)
                      ...|...+.+|.+..++.
T Consensus       361 p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCEEEEEecCCcEEEEEE
Confidence            567888888788877664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=5.1e-09  Score=94.62  Aligned_cols=247  Identities=17%  Similarity=0.217  Sum_probs=159.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .++.|...|.|||+|...|+|.+|.-....     ...+|++|.....   |-   ..-.....+..+.|+....     
T Consensus        30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~-----   98 (460)
T COG5170          30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG-----   98 (460)
T ss_pred             eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC-----
Confidence            445899999999999999999999754322     2344555543221   11   1112234667788887653     


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeE-------------------------------------E----EE-ecCCCCCCEE
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQL-------------------------------------K----WR-LSDCHPGGVS  121 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~-------------------------------------~----~~-~~~~h~~~V~  121 (579)
                        ...+++.+.+.+|++|.+.....                                     +    .+ ....|.-.+.
T Consensus        99 --r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          99 --RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             --cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence              56788999999999999864311                                     0    01 1145777789


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC-----CCeeEEEEccCCC--EEEEEC-CeEEEEECCCCe
Q 008041          122 AISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST-----KGISCMAVSSDGK--MLATAA-GQLKTFNCSDHK  190 (579)
Q Consensus       122 ~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~-----~~v~~l~~~p~g~--~l~~~~-~~i~vwd~~~~~  190 (579)
                      ++.|+.|...++++ .|-.|.+|++.--.   .+..++.|.     .-|++..|+|...  ++.+.+ |.|++-|++...
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            99999988888776 67889999986432   222344443     2578889999543  344455 999999998542


Q ss_pred             ee------E----------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc-------
Q 008041          191 KM------Q----------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA-------  247 (579)
Q Consensus       191 ~~------~----------~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-------  247 (579)
                      ..      .          -|.+-...|..+.|+++|+|+++-.  =-+|++||.+..+..    +.+.+-+.       
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~  329 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELN  329 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHH
Confidence            21      1          1122235688899999999998753  468999999887532    33332111       


Q ss_pred             ------eeEE--eEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          248 ------VFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       248 ------~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                            .+..  -+.|+     .|.+.+++|+..+..-+|-
T Consensus       330 d~YEnDaifdkFeisfS-----gd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         330 DVYENDAIFDKFEISFS-----GDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hhhhccceeeeEEEEec-----CCcccccccccccceeeec
Confidence                  1111  12233     6778888888877776664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=3.6e-08  Score=99.61  Aligned_cols=226  Identities=12%  Similarity=0.118  Sum_probs=140.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..++.++.+|.+..+|..+|+..........     .++.+            +.            .+..+++++.+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p------------~v------------~~~~v~v~~~~  154 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP------------LV------------ANGLVVVRTND  154 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC------------EE------------ECCEEEEECCC
Confidence            456777788899999999999998876542111     00100            00            14567888899


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCE-----EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC----C-----
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G-----  161 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----~-----  161 (579)
                      |.++.||..+|+.+++.... ...+     .+...  .+..++.+..++.+..+|..+|+.+........    .     
T Consensus       155 g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~  231 (377)
T TIGR03300       155 GRLTALDAATGERLWTYSRV-TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV  231 (377)
T ss_pred             CeEEEEEcCCCceeeEEccC-CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence            99999999999998776321 1111     11111  134677888899999999999987655331100    0     


Q ss_pred             -e-eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          162 -I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 -v-~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                       + .+..+. ++..++++. |.++.||.++++.+..... . .......  ++..++.++ .|+.+..+|..+++..   
T Consensus       232 ~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~---  302 (377)
T TIGR03300       232 DVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSEL---  302 (377)
T ss_pred             ccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEEC-CCCeEEEEECCCCcEE---
Confidence             0 111122 344444443 8999999999987766542 1 1122222  355666665 6999999999887643   


Q ss_pred             eeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                        ..... .........       ..+..|++++.+|.++++|..+++.+...+
T Consensus       303 --W~~~~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       303 --WKNDELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             --EccccccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence              22111 111111111       235688899999999999999998876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.05  E-value=1.3e-07  Score=90.40  Aligned_cols=173  Identities=16%  Similarity=0.133  Sum_probs=126.5

Q ss_pred             Ecc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        13 fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      |++ +|+++|..|. |+..|.+.-.+..++.-  +...+.-..+..                           .+.-++.
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~VrY~r~~~---------------------------~~e~~vi  376 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGVRYRRIQV---------------------------DPEGDVI  376 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCceEEEEEcc---------------------------CCcceEE
Confidence            444 6889998885 67777776656554321  111111111111                           1446899


Q ss_pred             EECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041           92 GTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        92 ~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      |+.|| .+-|||..+++... + .+.-+.|.++..+|+|+.++.+.....+.+.|+.+|.....=+...+-|+..+|||+
T Consensus       377 gt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n  454 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             eccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence            99999 59999999998753 3 346688999999999999999988889999999999876555556678999999999


Q ss_pred             CCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008041          171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       171 g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ++++|-+-      ..|++||+.+++....-. ..+.=.+-+|.||+++|..-+
T Consensus       455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            99999875      589999999988754432 233335678999999887654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=9.3e-08  Score=86.11  Aligned_cols=185  Identities=13%  Similarity=0.119  Sum_probs=125.3

Q ss_pred             CCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCC------C
Q 008041           94 GGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK------G  161 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~---~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------~  161 (579)
                      ..|.+.+|++...+...  .+....++.+..+.|..   +|. .++-+..+|.|.++..........+++-..      .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34778888887765432  22222345677777753   444 366677889999987654444444443221      2


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      ..++.|++.+..++++.  |.+.+-+......  +++.++|..+.....|+.... .+++|| +|+.+..||++..+.  
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg-DD~~l~~~D~R~p~~--  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG-DDGSLSCWDIRIPKT--  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC-CCceEEEEEecCCcc--
Confidence            45788999999888887  7887555544433  447889999999999986554 555555 899999999994431  


Q ss_pred             ceeeee--eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc-eeec
Q 008041          237 ASCVLA--MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI-EELR  288 (579)
Q Consensus       237 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~  288 (579)
                        +++.  ..|...+.+.....     |.+.+|++|+.|-.|++||.++. +++.
T Consensus       201 --~i~~n~kvH~~GV~SI~ss~-----~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  201 --FIWHNSKVHTSGVVSIYSSP-----PKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             --eeeecceeeecceEEEecCC-----CCCceEEEeccccceeeeehhcccCccc
Confidence              3332  33566666666555     78899999999999999998854 4443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=5.3e-07  Score=84.76  Aligned_cols=216  Identities=19%  Similarity=0.211  Sum_probs=135.1

Q ss_pred             CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC
Q 008041           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA  105 (579)
Q Consensus        26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~  105 (579)
                      +|+|..||..+|+.+....-.. ..                  ......+..       .+..+++++.++.++.||..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~------------------~~~~~~~~~-------~~~~v~~~~~~~~l~~~d~~t   55 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GI------------------GGPVATAVP-------DGGRVYVASGDGNLYALDAKT   55 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SC------------------SSEEETEEE-------ETTEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CC------------------CCccceEEE-------eCCEEEEEcCCCEEEEEECCC
Confidence            6899999999999988774211 00                  000000000       166788889999999999999


Q ss_pred             CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCCC---CeeEEEEccCCCEEEEEC--C
Q 008041          106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTK---GISCMAVSSDGKMLATAA--G  179 (579)
Q Consensus       106 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~---~v~~l~~~p~g~~l~~~~--~  179 (579)
                      |+.+++....  .++.... ..++..++.++.++.++.+|..+|+.+..+ .....   .........++..++++.  +
T Consensus        56 G~~~W~~~~~--~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  132 (238)
T PF13360_consen   56 GKVLWRFDLP--GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG  132 (238)
T ss_dssp             SEEEEEEECS--SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred             CCEEEEeecc--cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence            9998877432  2211111 224556777778899999999999998884 32211   112222222355555554  8


Q ss_pred             eEEEEECCCCeeeEEeecCCCC----------E-EEEEEecCCCEEEEEecCCCe-EEEEEcCCCccccceeeeeeecCc
Q 008041          180 QLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~----------v-~~l~~s~~~~~l~s~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      .|..+|.++|+.+.........          + ..+.+ .++ .++.++ .++. +.+ |+.+++..     .... ..
T Consensus       133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~-~~g~~~~~-d~~tg~~~-----w~~~-~~  202 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSS-GDGRVVAV-DLATGEKL-----WSKP-IS  202 (238)
T ss_dssp             EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEEC-CTSSEEEE-ETTTTEEE-----EEEC-SS
T ss_pred             cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEc-CCCeEEEE-ECCCCCEE-----EEec-CC
Confidence            9999999999998888664422          1 22222 344 555555 5665 555 99988632     2222 11


Q ss_pred             eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      .... . ..     .++..|++++.+|.+..||..+++.+
T Consensus       203 ~~~~-~-~~-----~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  203 GIYS-L-PS-----VDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             -ECE-C-EE-----CCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CccC-C-ce-----eeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            1111 1 12     57788888889999999999999875

...

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=7.3e-08  Score=93.89  Aligned_cols=320  Identities=12%  Similarity=0.059  Sum_probs=180.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      -+.|||-|.||+|--.-| |.+|--.+....+.|..+  .+....|+|.                           ..+|
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp--~Vq~idfSP~---------------------------EkYL  264 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP--GVQFIDFSPN---------------------------EKYL  264 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC--CceeeecCCc---------------------------cceE
Confidence            358999999999988766 789976555555544311  1222223332                           2333


Q ss_pred             EEEE----------CC-CeEEEEEccCCeEEEEecCC-CCCCE-EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           90 VLGT----------GG-GDVLALAVSAGQLKWRLSDC-HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        90 ~~~~----------~~-g~i~iwd~~~~~~~~~~~~~-h~~~V-~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                      ++-+          .+ ..+.|||+.+|.....+..- ....+ .-+.||.|+++++.-.. ..|.||+..+..++..-.
T Consensus       265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks  343 (698)
T KOG2314|consen  265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS  343 (698)
T ss_pred             EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence            3322          23 34999999999887555321 11223 34689999999987765 458999976543332222


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---------C
Q 008041          157 ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------G  220 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---------~  220 (579)
                      -....|....|+|.+++||-=.       ..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.--.         .
T Consensus       344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~  423 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ  423 (698)
T ss_pred             cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence            2345788899999999888644       46778888888777765544433334667677877765321         0


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---CCeEEEEEcCC-ceeecccCCeeEE
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IEELRNTKATKIL  296 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~~~~~~~~~~~~~  296 (579)
                      -..+.|+.++.....    +...+-...++. ..|.     |.|..+++.+.   ..++.+|.+++ .....-.+.....
T Consensus       424 f~n~eIfrireKdIp----ve~velke~vi~-FaWE-----P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~  493 (698)
T KOG2314|consen  424 FSNLEIFRIREKDIP----VEVVELKESVIA-FAWE-----PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK  493 (698)
T ss_pred             EeeEEEEEeeccCCC----ceeeecchheee-eeec-----cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence            113455555554322    222333333333 3444     88888777654   45899998873 2221111111112


Q ss_pred             eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc------
Q 008041          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL------  370 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~------  370 (579)
                      .+....++|.|.    .++.+..-+    ..|.+-..+-+ ...+.............+-|.|.|+|+ +++|.      
T Consensus       494 ~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~~-~a~~k~~~~~eh~~at~veWDPtGRYv-vT~ss~wrhk~  563 (698)
T KOG2314|consen  494 FANTVFWSPKGR----FVVVAALVS----RRGDLEFYDTD-YADLKDTASPEHFAATEVEWDPTGRYV-VTSSSSWRHKV  563 (698)
T ss_pred             ccceEEEcCCCc----EEEEEEecc----cccceEEEecc-hhhhhhccCccccccccceECCCCCEE-EEeeehhhhcc
Confidence            222334677777    666665543    12222222211 111111111222256788899999999 66663      


Q ss_pred             eecccceeee
Q 008041          371 LKSKRGRYVQ  380 (579)
Q Consensus       371 d~~~~~w~~~  380 (579)
                      |.--++|.++
T Consensus       564 d~GYri~tfq  573 (698)
T KOG2314|consen  564 DNGYRIFTFQ  573 (698)
T ss_pred             ccceEEEEee
Confidence            3334556554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.00  E-value=3.1e-09  Score=116.07  Aligned_cols=180  Identities=16%  Similarity=0.204  Sum_probs=145.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+.++|+.||.|++|....+..+......-++.|+.+.|+.+|+.+..+..||.+.+|... .++....+.|....+..
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred             CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence            45689999999999999998887655554555899999999999999999999999999975 77777888999888888


Q ss_pred             EEccCCCEEEEEC-----CeEEEEECCC--Ce-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          166 AVSSDGKMLATAA-----GQLKTFNCSD--HK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       166 ~~~p~g~~l~~~~-----~~i~vwd~~~--~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      .|-.  ..+++++     +.+.+||.--  +. .+.  ..|.+.++++++.|..+.|++|| .+|.|++||++..+.+  
T Consensus      2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~-- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR-- 2371 (2439)
T ss_pred             eeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH--
Confidence            8874  6777776     6899999652  22 233  78999999999999999999988 7999999999998754  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                             |+-..     +      ....++++|+..|.++||++.....+...+
T Consensus      2372 -------h~~~~-----~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 -------HTFQA-----L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             -------HHhhh-----h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence                   11111     1      134789999999999999998876665553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=7.2e-08  Score=96.54  Aligned_cols=239  Identities=11%  Similarity=0.140  Sum_probs=158.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -|++|+....|+|+|+.||.++|-.+.+...-...++ -.....+..... ..|| ...+..+.|+....         .
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH-~~sV~vvTWNe~~Q---------K   85 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGH-NASVMVVTWNENNQ---------K   85 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccC-cceEEEEEeccccc---------c
Confidence            5679999999999999999999998876544333333 122333444444 3466 34667788887644         3


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~  166 (579)
                      +-+...+|-|.+|-+-.|....... ....+.|.+++|+.||..+.....||.|.+=.+...+...+ +++  .....+.
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~  163 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL  163 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence            7788889999999998886543332 23456789999999999999999999998877654333222 222  2445789


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCC-------eeeEE----eecCCCCEEEEEEe--------cCCCEEEEEecCCCeEE
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDH-------KKMQK----FSGHPGAVRFMTFS--------DNGKYVLSSAVGERYIA  225 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~-------~~~~~----~~~h~~~v~~l~~s--------~~~~~l~s~~~~d~~i~  225 (579)
                      |++|.+.++.+-  |.+.+||.+..       .+...    +......|..+.|.        ||...|+.+- ..|.+.
T Consensus       164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~nGr~Q  242 (1189)
T KOG2041|consen  164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-ANGRMQ  242 (1189)
T ss_pred             ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cCceeh
Confidence            999998887776  89999997542       11111    11122235555553        4677788765 688887


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  273 (579)
                      +..-......   .+.   ..+..+....|+     ++|..|++++.+
T Consensus       243 iMR~eND~~P---vv~---dtgm~~vgakWn-----h~G~vLAvcG~~  279 (1189)
T KOG2041|consen  243 IMRSENDPEP---VVV---DTGMKIVGAKWN-----HNGAVLAVCGND  279 (1189)
T ss_pred             hhhhcCCCCC---eEE---ecccEeecceec-----CCCcEEEEccCc
Confidence            7654444322   121   223444556666     999999998764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.94  E-value=2.4e-07  Score=82.35  Aligned_cols=197  Identities=11%  Similarity=-0.006  Sum_probs=133.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      -..|+.|+..|...+|.+.+.+........|...|+-+.=..+.. .+..++.|.+++++++.-+..........-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            456899999999999999988765555455655444332222222 3667889999999998655433333222234789


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCC-ee-eE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDH-KK-MQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~-~~-~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++++||++++++.+  ..|..|.+... +. +. ........=.+..|+.....++++. .||++.|||++.........
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence            99999999999988  78999988643 22 22 1222333445678888888888887 89999999999875443333


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCc--EEEEEEcCCeEEEEEcCCceeec
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      ..+.+++...++...|+     +.|.  +|+..-.=+.+++-|.++++...
T Consensus       243 sstrp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             cccCCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCceee
Confidence            34456788888888887     4442  34444445789999988876543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.92  E-value=5.2e-08  Score=89.54  Aligned_cols=182  Identities=10%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .+++  -+++|.++...|..|-..|++.-+.+.    .....+....|...+....|+.+..---.....+++.|.-...
T Consensus        68 P~~~--~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   68 PSPC--SAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             CCCc--eEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence            4667  445999999999999999998888653    3344555567777777777765522111223344566654321


Q ss_pred             cccc------------ccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 008041           79 KKKR------------KLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        79 ~~~~------------~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iw  144 (579)
                      ..+-            ..+-.+.++|...|.|.+-.+....  .+.+ ..+|.+++++++|.|....+++|..|..+.+|
T Consensus       146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW  224 (404)
T ss_pred             CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence            1100            0011245566666776666554332  3333 47899999999999999999999999999999


Q ss_pred             eCCCCce-eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008041          145 DPLTGSL-LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (579)
Q Consensus       145 d~~~~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~  187 (579)
                      |+.-++- .....+|.+.|..+..-+--+.+.+++  |.|.+|+.+
T Consensus       225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            9865443 345777888888888887777888877  899999874

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=2.8e-09  Score=103.25  Aligned_cols=174  Identities=14%  Similarity=0.141  Sum_probs=131.6

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-------CceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEEC
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC  186 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~  186 (579)
                      .||+..|..++--.+.+.|++++.|++|++|.++.       ..+-.+++.|+.+|..+.|-.+-+.+++++|-|++||.
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDP  811 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDP  811 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecc
Confidence            68998898887777788899999999999999863       23666788999999999999999999999999999998


Q ss_pred             CCCeeeEEee--cCCCCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC
Q 008041          187 SDHKKMQKFS--GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (579)
Q Consensus       187 ~~~~~~~~~~--~h~~~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                      --++.+..+.  ...+.+..+..-+  +...++++++...+|+++|.+.......-.+.....++...+++...     +
T Consensus       812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa-----~  886 (1034)
T KOG4190|consen  812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA-----D  886 (1034)
T ss_pred             cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec-----c
Confidence            7777665432  1223334444434  34455555457889999999987643111222234556677888887     8


Q ss_pred             CCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041          263 AGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      .|++++++-.+|+|.+.|.++|+.+..-.|
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            999999999999999999999988765443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=5.5e-07  Score=91.13  Aligned_cols=189  Identities=14%  Similarity=0.115  Sum_probs=116.6

Q ss_pred             eEEEEccCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 l~~~fspdg~~-lasg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +...|||||+. ++..+.+   ..|.++|+.+|+...... ..+.                  .....|.|.        
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~------------------~~~~~~SPD--------  243 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM------------------LVVSDVSKD--------  243 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc------------------EEeeEECCC--------
Confidence            56799999985 6655543   468888998887654332 1111                  112335443        


Q ss_pred             CCc-EEEEEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecC
Q 008041           85 GSS-LLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        85 ~~~-~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~  158 (579)
                       +. ++++.+.+  ..|+++|+.+++.. .+. .+........|+|||+.++..+. .+  .|+++|+.+++..+.... 
T Consensus       244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-  319 (419)
T PRK04043        244 -GSKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-  319 (419)
T ss_pred             -CCEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence             43 33444434  45888998888754 332 23333445689999998776653 22  688889887776443321 


Q ss_pred             CCCeeEEEEccCCCEEEEEC--C---------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEE
Q 008041          159 TKGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIA  225 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~---------~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~  225 (579)
                      ...  ...|+|||+.++...  .         .|++.|+.++.. ..+... .......|+|||+.++......+  .+.
T Consensus       320 g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~  395 (419)
T PRK04043        320 GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG  395 (419)
T ss_pred             CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence            111  248999999888764  1         578889888754 344433 23345889999998877653323  355


Q ss_pred             EEEcCCC
Q 008041          226 LWRTDGV  232 (579)
Q Consensus       226 vwd~~~~  232 (579)
                      +.++...
T Consensus       396 ~~~l~g~  402 (419)
T PRK04043        396 IIRLNYN  402 (419)
T ss_pred             EEecCCC
Confidence            6666554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.88  E-value=1.8e-08  Score=94.62  Aligned_cols=159  Identities=11%  Similarity=0.159  Sum_probs=109.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +.++|+|+++|.+..+....++++........+-.               ........+.+.+...         ...+.
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~---------------~~~v~~~~~ai~~~~~---------~~sv~  123 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD---------------VSCVPKRPTAISFIRE---------DTSVL  123 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeee---------------EeecccCcceeeeeec---------cceEE
Confidence            36889999999998888877887764432111100               0001112223333333         33456


Q ss_pred             EEECCCeEE---EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008041           91 LGTGGGDVL---ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA  166 (579)
Q Consensus        91 ~~~~~g~i~---iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~  166 (579)
                      ++...|+++   +|+...+.+.  ..-||-+.+++++|+||+++++++..|..|++-....-..+.. +-+|...|..++
T Consensus       124 v~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             EEeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            666666644   4544445443  3358999999999999999999999999999987665555555 456999999999


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEee
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFS  196 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~  196 (579)
                      .-++. .|++++  +++++||+.+|+.+.++.
T Consensus       202 l~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            98765 466666  899999999999886664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=8.5e-09  Score=100.03  Aligned_cols=230  Identities=14%  Similarity=0.178  Sum_probs=148.9

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      .||.+  +--.+.+-+++++.|.+|++|.++.       ..+..+++.|..++.++.|-.+                   
T Consensus       737 ~iRai--~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-------------------  795 (1034)
T KOG4190|consen  737 KIRAI--AAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-------------------  795 (1034)
T ss_pred             HhHHH--HhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-------------------
Confidence            34444  3334556788999999999998863       3466677777776665555433                   


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecC----CCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCcee
Q 008041           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~  152 (579)
                                +-.+++.||-|++||+--+..+.+...    +..+.|.|+. +-+...++. |+...+|+++|.+.+.-.
T Consensus       796 ----------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~  864 (1034)
T KOG4190|consen  796 ----------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT  864 (1034)
T ss_pred             ----------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence                      125678899999999988876554331    1222344432 223444444 478899999999988766


Q ss_pred             eEeec-----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          153 GKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       153 ~~~~~-----~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      ..++.     ....+.++++.|.|+.++.+-  |.|.+.|.++|+.+..+..-......++- |..+.++.+. -|.++.
T Consensus       865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa-ldHsla  942 (1034)
T KOG4190|consen  865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA-LDHSLA  942 (1034)
T ss_pred             eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc-ccceeE
Confidence            55543     345688999999999999886  99999999999988776654444444443 5566777776 588998


Q ss_pred             E-EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          226 L-WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       226 v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      + |..-.+.     ..++...+........       .-|..+++....+.+.+|-
T Consensus       943 VnWhaldgi-----mh~q~kpppepahflq-------svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  943 VNWHALDGI-----MHLQDKPPPEPAHFLQ-------SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             eeehhcCCe-----eeeccCCCCcchhhhh-------ccCceeEEeccCcEEEEEe
Confidence            8 8766553     1222222222211111       2345567766666777773

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.87  E-value=6.8e-06  Score=77.61  Aligned_cols=217  Identities=18%  Similarity=0.196  Sum_probs=131.2

Q ss_pred             EEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+|.+ +|.++++--..+.|..|+..++....... ..  .....+                  ...         ...+
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~------------------~~~---------~g~l   54 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAF------------------DRP---------DGRL   54 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEE------------------ECT---------TSEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEE------------------Ecc---------CCEE
Confidence            36888 66666666578999999998887643211 11  111111                  111         3446


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec---CC-CCCCEEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeeEeec
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLS---DC-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~---~~-h~~~V~~l~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~  157 (579)
                      +++...+ +.++|+.+++......   .. .....+++++.|+|+..++....        |.|..++.. ++...... 
T Consensus        55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-  131 (246)
T PF08450_consen   55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-  131 (246)
T ss_dssp             EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred             EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence            6666544 4555999886542222   11 34568899999999976665533        568888876 55444333 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-e------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-K------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~-~------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .-...+.|+|+|+++.|+.+.   +.|..|++... .      .+..+....+..-.+++..+|+..++.. ..+.|.++
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~  210 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF  210 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence            345678999999999887654   78999988632 1      1222232223478899999998776654 68899999


Q ss_pred             EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      +.+ ++..     ..+..+......++|.    -++.+.|++.+
T Consensus       211 ~p~-G~~~-----~~i~~p~~~~t~~~fg----g~~~~~L~vTt  244 (246)
T PF08450_consen  211 DPD-GKLL-----REIELPVPRPTNCAFG----GPDGKTLYVTT  244 (246)
T ss_dssp             ETT-SCEE-----EEEE-SSSSEEEEEEE----STTSSEEEEEE
T ss_pred             CCC-ccEE-----EEEcCCCCCEEEEEEE----CCCCCEEEEEe
Confidence            988 5432     2333332345556663    15666665554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.86  E-value=3.4e-06  Score=79.61  Aligned_cols=191  Identities=18%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeeEeec-----CC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~~  159 (579)
                      +.++++-...+.|+.|+..+++.......    ...++.+. +++ .++.+..++ +.++|..+++....+..     ..
T Consensus        12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~   85 (246)
T PF08450_consen   12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP----GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF   85 (246)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEESS----SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred             CEEEEEEcCCCEEEEEECCCCeEEEEecC----CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence            66677777789999999999887532222    27788888 564 555665544 56669988865444332     23


Q ss_pred             CCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      ..++.+++.|+|++.++..          |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.+..+.|..+++
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence            4788999999999777754          247777776 55433333 34567899999999988766667888999998


Q ss_pred             CCCcc-c-cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          230 DGVKK-Q-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       230 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ..... . .................+++.     .+|+..++.-..+.|.++|.+ |+.+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence            65432 1 111222233333346777787     889888877789999999987 7665433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=3e-06  Score=85.81  Aligned_cols=177  Identities=12%  Similarity=0.011  Sum_probs=112.3

Q ss_pred             EEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eC--CCcEEEEeCCCCceeeEeecCCCCe
Q 008041           89 LVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GA--DGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        89 l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~--d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      ++..+..   ..|+++|+.+++.....  ...+......|+|||+.++.. +.  +..|+++|+.+++..+ +..+....
T Consensus       203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d  279 (419)
T PRK04043        203 FYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGID  279 (419)
T ss_pred             EEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCcc
Confidence            5544443   45999999988764332  244556778899999876543 33  3568888987776433 44333333


Q ss_pred             eEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCC--------CeEEEEE
Q 008041          163 SCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGE--------RYIALWR  228 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d--------~~i~vwd  228 (579)
                      ....|+|||+.|+..+     ..|+++|+.+++..+... +..    ...|+|||++++..+..+        ..|.+.|
T Consensus       280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d  355 (419)
T PRK04043        280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS  355 (419)
T ss_pred             CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence            4568999999887765     279999998876533222 221    248999999988876432        3678888


Q ss_pred             cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCc
Q 008041          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI  284 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~  284 (579)
                      +.++...      .+.... ......|+     |||+.|+..+.++   .+.+.+++..
T Consensus       356 ~~~g~~~------~LT~~~-~~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        356 TNSDYIR------RLTANG-VNQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCCCCeE------ECCCCC-CcCCeEEC-----CCCCEEEEEEccCCcEEEEEEecCCC
Confidence            8776532      111111 11234566     9999887776533   4556666543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1e-06  Score=86.16  Aligned_cols=239  Identities=13%  Similarity=0.173  Sum_probs=154.0

Q ss_pred             EEEccCCCEEEEEeC-----------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041           11 TSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus        11 ~~fspdg~~lasg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.|||+.+||+|-+.           ...+.|||+.+|...+.|......               ........|...   
T Consensus       255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~---------------~~~WP~frWS~D---  316 (698)
T KOG2314|consen  255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP---------------YLKWPIFRWSHD---  316 (698)
T ss_pred             eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC---------------ccccceEEeccC---
Confidence            399999999998663           147999999999998887632110               123344556553   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceeeE
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~  154 (579)
                            ..+ ++.-....|.||+...-.++. ...-.-.+|....|+|.++.|+.-..     -.++.+..+.+++.+++
T Consensus       317 ------dKy-~Arm~~~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  317 ------DKY-FARMTGNSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             ------Cce-eEEeccceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence                  233 334444779999987744331 11224467899999999888775432     23577777777877776


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-  221 (579)
                      -.-+.-.=..+-|-.+|.+|+.--            ..+.|+.++....-...-.-...|...+|-|.|..+++-+.++ 
T Consensus       389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~  468 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV  468 (698)
T ss_pred             ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence            554443445577778888887532            2566666665443222223456788999999998776655333 


Q ss_pred             -CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---CCeEEEEEcCC
Q 008041          222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN  283 (579)
Q Consensus       222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~  283 (579)
                       .++.+|.+.+.... .+.+..++  ......++|+     |.|++++++..   .|.+.++|...
T Consensus       469 k~tvsfY~~e~~~~~-~~lVk~~d--k~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  469 KNTVSFYAVETNIKK-PSLVKELD--KKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             ccceeEEEeecCCCc-hhhhhhhc--ccccceEEEc-----CCCcEEEEEEecccccceEEEecch
Confidence             46888988853211 11223322  2344567777     99999988854   68999999874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.85  E-value=9.7e-08  Score=87.76  Aligned_cols=247  Identities=13%  Similarity=0.083  Sum_probs=152.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE----EEEecCCCC------------CCEEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~  147 (579)
                      |.+|++|..+|.|.+|.-.....    .....+.|.            ..|..+.|.++++  .++..+.|.+|++|-+.
T Consensus        37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~  116 (433)
T KOG1354|consen   37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR  116 (433)
T ss_pred             cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence            88999999999999987543221    222223343            3588899998765  47777899999999875


Q ss_pred             CCce-----------------------------------eeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008041          148 TGSL-----------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK  190 (579)
Q Consensus       148 ~~~~-----------------------------------~~~~-~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~  190 (579)
                      ....                                   .+.+ .+|.--|++|.++.|+..+++++ =.|.+|+++-..
T Consensus       117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d  196 (433)
T KOG1354|consen  117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID  196 (433)
T ss_pred             ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence            3211                                   0111 14666889999999999999999 699999987432


Q ss_pred             e---eEEeecCC-----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc-ceeeeeeecC----------ceeE
Q 008041          191 K---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAMEHP----------AVFM  250 (579)
Q Consensus       191 ~---~~~~~~h~-----~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~----------~~~~  250 (579)
                      .   +..++.+.     .-|++..|+|... .++.++ ..|+|++.|++....-. ....+..+..          -..+
T Consensus       197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI  275 (433)
T KOG1354|consen  197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI  275 (433)
T ss_pred             CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence            2   22333333     4588889999643 455555 58999999998542110 0011111110          1123


Q ss_pred             EeEEecCCcccCCCcEEEEEEcCCeEEEEEcC-CceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceE
Q 008041          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  329 (579)
                      +-+.|+     ++|+++++-+. -+|++||+. ..+.+...+-+     +      .-+   ..+..-....        
T Consensus       276 SDvKFs-----~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh-----~------~lr---~kLc~lYEnD--------  327 (433)
T KOG1354|consen  276 SDVKFS-----HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH-----E------YLR---SKLCSLYEND--------  327 (433)
T ss_pred             hceEEc-----cCCcEEEEecc-ceeEEEeccccCCcceEEeeh-----H------hHH---HHHHHHhhcc--------
Confidence            444555     89999987654 589999973 22222211100     0      000   0111111100        


Q ss_pred             EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                             ..           .....++||.++..+ +|||..+..++.+..
T Consensus       328 -------~I-----------fdKFec~~sg~~~~v-~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  328 -------AI-----------FDKFECSWSGNDSYV-MTGSYNNVFRVFNLA  359 (433)
T ss_pred             -------ch-----------hheeEEEEcCCcceE-ecccccceEEEecCC
Confidence                   01           134567899999999 999999999998853

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.84  E-value=1.4e-06  Score=98.00  Aligned_cols=213  Identities=11%  Similarity=0.117  Sum_probs=128.9

Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCcccccccccccc-ccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++|+++++.|+.+.. .+.|+++|..++.. .++.+.....  ..+... ......-.....+.+.+.+        +.
T Consensus       628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g--~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~  696 (1057)
T PLN02919        628 GLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKG--SDYQGGKKGTSQVLNSPWDVCFEPVN--------EK  696 (1057)
T ss_pred             EEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCccc--CCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence            3489998887666654 56799999877653 3333211000  000000 0000000111234444432        45


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEe-------cCC------CCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceee
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRL-------SDC------HPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~-------~~~------h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~  153 (579)
                      ++++.+.++.|++||..++....-.       ..+      .-...++++|+|+|+.++ +-+.++.|++||+.++....
T Consensus       697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL  776 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            5666677788999999877653110       001      112456899999998655 44567899999998765321


Q ss_pred             Eeec-------------C--------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-c------------
Q 008041          154 KFRA-------------S--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-G------------  197 (579)
Q Consensus       154 ~~~~-------------~--------~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~------------  197 (579)
                      ...+             .        -.....++++|+|+++++-.  +.|++||..++....... +            
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a  856 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA  856 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence            1100             0        11346899999998777765  799999998876543221 1            


Q ss_pred             CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       198 h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      +-.....++++++|+.+++-+ .++.|++||+.+++.
T Consensus       857 ~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        857 QLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence            112467899999998776655 789999999988753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.82  E-value=7.5e-07  Score=90.42  Aligned_cols=226  Identities=16%  Similarity=0.129  Sum_probs=138.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.+|.+.-+|.++|+...+......     .++.+            +.            .+..+++++.+|
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP------------~v------------~~~~v~v~~~~g  170 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP------------VV------------SDGLVLVHTSNG  170 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC------------EE------------ECCEEEEECCCC
Confidence            45666777889999999999998876653211     01111            00            145678889999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCC----EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-------CeeEE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGG----VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCM  165 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~----V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~l  165 (579)
                      .++.+|..+|+.+++........    ..+...  .+..++.++.++.+..+|..+|+.+..+.....       ....+
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~  248 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV  248 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence            99999999999988774321100    001111  233577778899999999999987665432110       01111


Q ss_pred             EEcc---CCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          166 AVSS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       166 ~~~p---~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      ..+|   ++..++++. |.++.+|..+|+.+.+..-  .....+..  .+..++.++ .++.+..+|..+++..     .
T Consensus       249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~~~-----W  318 (394)
T PRK11138        249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVD-QNDRVYALDTRGGVEL-----W  318 (394)
T ss_pred             CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEc-CCCeEEEEECCCCcEE-----E
Confidence            1222   454554444 8999999999987765431  11122222  344566665 6899999999887643     1


Q ss_pred             eeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          242 AMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       242 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      .... ..........       .+..|++++.||.++.+|..+|+.+...
T Consensus       319 ~~~~~~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        319 SQSDLLHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             cccccCCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            1111 0111111111       2466788999999999999999877544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.82  E-value=4.9e-06  Score=80.00  Aligned_cols=169  Identities=18%  Similarity=0.207  Sum_probs=125.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++++.+. |+..+.+...+-.+ +  -+|.+.|.-..+..+++-++.|..|| .+-++|..+++. ..+...-+.|.+
T Consensus       332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            667777665 66677766666554 2  36888899999988888899999999 899999877654 445556778999


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccce
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSAS  238 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~~~~~~  238 (579)
                      +..+|+|+.++.+.  ..|.++|++++.....-+...+-|+.+.|+|++++++.+- -+|    .|+++|+..++.-   
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Kiy---  482 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKIY---  482 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeEE---
Confidence            99999999999988  6888889999976555556678899999999999998864 454    6999999987632   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                         ....+...=-.-+|.     ||+++|.--+
T Consensus       483 ---~vTT~ta~DfsPaFD-----~d~ryLYfLs  507 (668)
T COG4946         483 ---DVTTPTAYDFSPAFD-----PDGRYLYFLS  507 (668)
T ss_pred             ---EecCCcccccCcccC-----CCCcEEEEEe
Confidence               222221111122344     8888876554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=4.2e-07  Score=92.13  Aligned_cols=246  Identities=13%  Similarity=0.102  Sum_probs=159.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +.|+|.| ++|.|+. ..|.|-|..+-+.++.+..|...++.+.|++...  +...         .++.    ...-+|+
T Consensus        21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~--p~~l---------lS~~----~~~lliA   83 (1062)
T KOG1912|consen   21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPS--PRDL---------LSPS----SSQLLIA   83 (1062)
T ss_pred             cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCC--chhc---------cCcc----ccceeEE
Confidence            3788877 8888884 4788999999999988877766665555544310  0000         0000    0134678


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      ++.-.|.|.+||...+..+..+ ..|.+++.+++|-+   +. ..++.-....++.+|+..+|+.+.+.........|+.
T Consensus        84 saD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~  162 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR  162 (1062)
T ss_pred             eccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence            8888899999999998887666 56889999999976   33 3466667788999999999999988877777888899


Q ss_pred             Ecc-CCCEEEE-EC-CeEEEEECCC-------CeeeEEeecCCC----------------C---------EEEEEEecCC
Q 008041          167 VSS-DGKMLAT-AA-GQLKTFNCSD-------HKKMQKFSGHPG----------------A---------VRFMTFSDNG  211 (579)
Q Consensus       167 ~~p-~g~~l~~-~~-~~i~vwd~~~-------~~~~~~~~~h~~----------------~---------v~~l~~s~~~  211 (579)
                      +.| |.+.+.. ++ |.+.+-+.-.       ++.+..-..|..                .         ...++|+|.-
T Consensus       163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~  242 (1062)
T KOG1912|consen  163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW  242 (1062)
T ss_pred             eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence            998 4444443 44 6666554321       222222222222                0         1234677765


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      +.++... -.+.+.++|++-....     ....-+......+.+-+   .|....|++...||.+.+|--+.
T Consensus       243 rn~lfi~-~prellv~dle~~~~l-----~vvpier~~akfv~vlP---~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  243 RNILFIT-FPRELLVFDLEYECCL-----AVVPIERGGAKFVDVLP---DPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hceEEEE-eccceEEEcchhhcee-----EEEEeccCCcceeEecc---CCCcceEEEEecCCeEEEEEeec
Confidence            5444444 4778999999877643     23322222222222220   14556799999999999996443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.79  E-value=2.3e-06  Score=86.90  Aligned_cols=236  Identities=13%  Similarity=0.106  Sum_probs=139.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+..+++++.+|.|.-+|..+|+.+.........   ..++.. ......  .....            .+..+++++.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~  129 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK  129 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence            3557777788899999999999998876532210   000000 000000  00000            15668889999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEcc
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS  169 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p  169 (579)
                      |.++.+|..+|+.+++....  +.+.+ ...  .+..++.++.++.++.+|..+|+.+..+......+     .+.... 
T Consensus       130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-  204 (394)
T PRK11138        130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-  204 (394)
T ss_pred             CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence            99999999999998876422  22222 112  24467778889999999999999888765421111     111122 


Q ss_pred             CCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-------CEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       170 ~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++..++... |.+..+|..+|+.+.+......       ....+.-+|  .+..++.++ .++.+..+|..+++..    
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~----  279 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV----  279 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE----
Confidence            344444444 8999999999987655431110       000111112  234566655 6899999999988643    


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                       ....... ... ..       ..+..|+.++.+|.++.+|..+++.+-.
T Consensus       280 -W~~~~~~-~~~-~~-------~~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        280 -WKREYGS-VND-FA-------VDGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             -EeecCCC-ccC-cE-------EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence             2211111 001 11       2456788888999999999999987643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.77  E-value=3.4e-06  Score=76.52  Aligned_cols=197  Identities=16%  Similarity=0.226  Sum_probs=109.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +||||+.+||.+...|+|+|||+....+ ..+.......           +.....+..+.+.......+.   ..-+++
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~-----------~d~~~Aiagl~Fl~~~~s~~w---s~ELlv  114 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFP-----------GDLSDAIAGLIFLEYKKSAQW---SYELLV  114 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccC-----------CccccceeeeEeecccccccc---ceeEEE
Confidence            9999999999999999999999975443 3443211100           112223333333332211110   334677


Q ss_pred             EECCCeEEEEEccCC--e---E--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-----------EEEEeCCCCceee
Q 008041           92 GTGGGDVLALAVSAG--Q---L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----------VCEIDPLTGSLLG  153 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~--~---~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----------v~iwd~~~~~~~~  153 (579)
                      -+..|.++-|-+..+  +   .  ...+...+...|.++.|+|..+.|+.|+....           +..|.+-++.+  
T Consensus       115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P--  192 (282)
T PF15492_consen  115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP--  192 (282)
T ss_pred             EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC--
Confidence            777888777766432  1   1  12233345678999999999888877763221           22222221111  


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          154 KFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                               ....+...+.-+.....+-.+|.+-+.+...........|..|..||||+.|++.. .+|.|.+|++.+-.
T Consensus       193 ---------yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  193 ---------YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSLR  262 (282)
T ss_pred             ---------cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcch
Confidence                     11111111111111111223333333222222223457799999999999999987 69999999998865


Q ss_pred             cc
Q 008041          234 KQ  235 (579)
Q Consensus       234 ~~  235 (579)
                      .+
T Consensus       263 ~~  264 (282)
T PF15492_consen  263 LQ  264 (282)
T ss_pred             hh
Confidence            43

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.76  E-value=5.1e-06  Score=78.07  Aligned_cols=188  Identities=21%  Similarity=0.282  Sum_probs=124.3

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        13 fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      ..+++.++++++.++.|..||..+|+.+.++.... .+..              .       +. .      .+..++++
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~--------------~-------~~-~------~~~~v~v~   82 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISG--------------A-------PV-V------DGGRVYVG   82 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGS--------------G-------EE-E------ETTEEEEE
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccc--------------e-------ee-e------cccccccc
Confidence            34467778888899999999999999988776311 1110              0       00 0      16678888


Q ss_pred             ECCCeEEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008041           93 TGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------  161 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~--------  161 (579)
                      +.++.++.+|..+|+.+++......   ..........++..++.+..++.|..+|+.+|+.+..+......        
T Consensus        83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  162 (238)
T PF13360_consen   83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSF  162 (238)
T ss_dssp             ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred             cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence            8999999999999999988422111   11222333334778888888999999999999998887664422        


Q ss_pred             --eeEEEEccCCCEEEEEC-Ce-EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          162 --ISCMAVSSDGKMLATAA-GQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       162 --v~~l~~~p~g~~l~~~~-~~-i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                        +.+-....++..+++.. +. +.+ |..+++.+....  ...+.. ....++..++.++ .++.+..||+.+++.
T Consensus       163 ~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  163 SDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             TTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             cccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence              11222333555555554 64 555 999998664333  223333 1446677888877 799999999999874

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=1.4e-07  Score=88.82  Aligned_cols=160  Identities=11%  Similarity=0.133  Sum_probs=108.3

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCCCCeeEEEEccCCCEEEEEC--C---eEEEEECCCC
Q 008041          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH  189 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~---~i~vwd~~~~  189 (579)
                      .+..+..++.+++++.+..+....++++....    ....+.. ....+++.+..+......+.  |   .+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            34556678888889988888887777765443    2222222 22345566655555555544  4   5666665554


Q ss_pred             eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE
Q 008041          190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       190 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (579)
                      .+ ..+-||-+.+..++|+||+++++++- .|..|++-........   ..+-++|... ++..+.      -+++.|++
T Consensus       143 ~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~eF-VS~isl------~~~~~LlS  210 (390)
T KOG3914|consen  143 RC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKEF-VSTISL------TDNYLLLS  210 (390)
T ss_pred             Cc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHhh-eeeeee------ccCceeee
Confidence            43 34568999999999999999998875 7999998776654332   2234445444 444444      35677999


Q ss_pred             EEcCCeEEEEEcCCceeecccC
Q 008041          270 ISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       270 ~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ++.|+++++||+.+|+.+....
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cCCCCcEEEEecccCCcccccc
Confidence            9999999999999999986544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.76  E-value=3e-06  Score=75.61  Aligned_cols=187  Identities=13%  Similarity=0.074  Sum_probs=127.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEe-ccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      .+||.||.-|...+|...+.+....+ ..+...+.-   ...          -|.             ...-+..++.|.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~---~~r----------~cd-------------~~~~~~i~sndh  138 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL---VKR----------YCD-------------LKFPLNIASNDH  138 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhh---hhh----------hcc-------------cccceeeccCCc
Confidence            48999999999999998866543222 111111110   000          000             023368888999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCC--EEEEEEccCCCEEEEEeCCCcEEEEeCCCC-c-eeeEe-ecCCCCeeEEEEccCC
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGG--VSAISFATHGSCIYSAGADGMVCEIDPLTG-S-LLGKF-RASTKGISCMAVSSDG  171 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~-~~~~~-~~~~~~v~~l~~~p~g  171 (579)
                      ++++.++..+......   |...  +.++.+++|++++++.+....|..|.+... + .+.+. ....+.=.+..|+...
T Consensus       139 t~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  139 TGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             ceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            9888888766543232   3333  889999999999999999999999987643 2 22222 2223344678999999


Q ss_pred             CEEEEEC--CeEEEEECCCCeeeE-----EeecCCCCEEEEEEecCCC--EEEEEecCCCeEEEEEcCCCcc
Q 008041          172 KMLATAA--GQLKTFNCSDHKKMQ-----KFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       172 ~~l~~~~--~~i~vwd~~~~~~~~-----~~~~h~~~v~~l~~s~~~~--~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ..+|++.  |++.|||++.....+     +-+.|.+.++.+.|++.|.  .|+.+ ..-+.+.+.|+++...
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVN  286 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCce
Confidence            9999998  999999999754322     2256889999999998664  34443 3567899999998764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=8.4e-09  Score=105.40  Aligned_cols=192  Identities=17%  Similarity=0.313  Sum_probs=135.7

Q ss_pred             cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q 008041           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCE  143 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~i  143 (579)
                      ..++|+++...         .+.|++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.+|..+++.+.-.  -..+
T Consensus      1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence            46677777654         677999999999999999999887555 68999999999999999876655333  5778


Q ss_pred             EeCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ec---CCCCEEEEEEecCCCEEEE
Q 008041          144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~---h~~~v~~l~~s~~~~~l~s  216 (579)
                      |++.+ +...++|.+    -.++.|+.....-+.|.  ....+||++++..+.++ .+   ....-+...|+|+...++ 
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            99863 455555553    36788886544444444  68899999999877663 22   222336789999987764 


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                         +||  .+||.+..+..     ..+..-.....      +.|+|+|..++..++     |||++|.+.+...+..
T Consensus      1247 ---ndG--vLWDvR~~~aI-----h~FD~ft~~~~------G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFTDYGG------GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ---eCc--eeeeeccHHHH-----hhhhhheeccc------ccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence               577  58999987533     22322221121      223499999888765     8999999888766544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=2.5e-05  Score=73.25  Aligned_cols=201  Identities=14%  Similarity=0.187  Sum_probs=134.4

Q ss_pred             cceEEEEcc-CCCEEEEEeCCCc-EEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            7 RDILTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         7 ~~l~~~fsp-dg~~lasg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      |.-.++.+| ++..++.+-.-|+ ..+||..+++....+........   |      ||       -.|.+         
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---y------GH-------g~fs~---------   60 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---Y------GH-------GVFSP---------   60 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---e------cC-------EEEcC---------
Confidence            344558999 5566777777665 67899999998887754322111   0      11       11111         


Q ss_pred             CCcEEEEEEC-----CCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------------------CCCc
Q 008041           85 GSSLLVLGTG-----GGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGM  140 (579)
Q Consensus        85 ~~~~l~~~~~-----~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------------------~d~~  140 (579)
                      ++.+|++.-+     .|.|-|||.. +-+.+.++ ..|.-.-..+.+.|||+.|+.+.                  .+..
T Consensus        61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            1666666544     3669999999 44555555 45666677889999998877762                  2234


Q ss_pred             EEEEeCCCCceeeEee----cCCCCeeEEEEccCCCEEEEEC--C-------eEEEEECCCCeeeEEee-------cCCC
Q 008041          141 VCEIDPLTGSLLGKFR----ASTKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKFS-------GHPG  200 (579)
Q Consensus       141 v~iwd~~~~~~~~~~~----~~~~~v~~l~~~p~g~~l~~~~--~-------~i~vwd~~~~~~~~~~~-------~h~~  200 (579)
                      +...|..+|+.+....    -|...|..+++.++|..++..-  |       -+.+++-..  .+..+.       .-.+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~  217 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNG  217 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCC
Confidence            5666778888877633    2666899999999998777654  2       345554333  222222       2346


Q ss_pred             CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .+-+|++++++..+++++-.-+.+.+||..++...
T Consensus       218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            78999999999988887777889999999998743

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.72  E-value=1.6e-07  Score=83.10  Aligned_cols=188  Identities=12%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCceeeEeecCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                      .+.++++..||.+.+++...-... .++..-|.+ -.+.++...++.+.++.     .-+..+.|+++..+.+..-.-..
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            566899999999999987752111 111111221 11222333444444432     23345666665433222211122


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECCCCee-eEEeecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEcCCCcc
Q 008041          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~-~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ..|.+++-+|..+.++.++   |.+-+||.++... ...+..|+.++..+-|+|. +..|++++ +||.+..||..+.-.
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~~~l  258 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDASTTFL  258 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCCceE
Confidence            3599999999776665554   8999999998743 3445789999999999985 55788887 899999999874210


Q ss_pred             c-----c-------ceee-----eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          235 Q-----S-------ASCV-----LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       235 ~-----~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      .     .       ...+     ...--+....+...|.     --|..|++|+.-+-|++++
T Consensus       259 ~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD-----V~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  259 SISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD-----VLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EecCccccccccccCCcccceEeeeccccccceeeeeee-----ccCceEEeccccceEEEec
Confidence            0     0       0000     0000112222333333     5678888888888888874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.70  E-value=6.9e-06  Score=90.74  Aligned_cols=187  Identities=12%  Similarity=0.200  Sum_probs=123.9

Q ss_pred             CcEEEEEECCCeEEEE----EccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---------
Q 008041           86 SSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------  152 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iw----d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---------  152 (579)
                      ...++++..+|.|.+.    +..+...  .....-..+|.+++|+||+..++..+.++++.+.+- +..++         
T Consensus        87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   87 SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD  163 (928)
T ss_pred             CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence            5668999999999998    5555443  222334578999999999999999988988877642 11111         


Q ss_pred             ---------------eEeec------------------------CCCCeeEEEEccCCCEEEEEC--------CeEEEEE
Q 008041          153 ---------------GKFRA------------------------STKGISCMAVSSDGKMLATAA--------GQLKTFN  185 (579)
Q Consensus       153 ---------------~~~~~------------------------~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd  185 (579)
                                     ..|+|                        ....-..|+|-.||.++|+.+        ..++||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                           11111                        122345788999999999875        3789998


Q ss_pred             CCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC
Q 008041          186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       186 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      - .|+...+-..-.+--.+++|.|.|+++++.....  ..|.+|.-..-+.  .............+..+.|+     +|
T Consensus       244 R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh--geF~l~~~~~~~~v~~l~Wn-----~d  315 (928)
T PF04762_consen  244 R-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH--GEFTLRFDPEEEKVIELAWN-----SD  315 (928)
T ss_pred             C-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe--eeEecCCCCCCceeeEEEEC-----CC
Confidence            4 4765544444444456789999999988875322  3455555433321  12222222445566778887     89


Q ss_pred             CcEEEEEEcCCeEEEEEcCCc
Q 008041          264 GLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       264 ~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      +..|+....|. |.+|-..+.
T Consensus       316 s~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCEEEEEecCC-ceEEEeeCC
Confidence            99999977655 999976554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.68  E-value=6.8e-05  Score=66.96  Aligned_cols=142  Identities=21%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      ..+++.|+-.+.+.--|.++|....+-.-                   ...+.+-+..-          ++++++|..+|
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-------------------g~RiE~sa~vv----------gdfVV~GCy~g   73 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-------------------GVRIECSAIVV----------GDFVVLGCYSG   73 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-------------------CceeeeeeEEE----------CCEEEEEEccC
Confidence            35777888888888899999988765321                   00111111110          78899999999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc-CCCEEE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA  175 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~  175 (579)
                      .+++.+..+|...+.+....+-.+.. ...+++..++.++.|++.+..|.++..++.+.+...+...+-++.| ++.+++
T Consensus        74 ~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen   74 GLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             cEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence            99999999998877664332222332 3467899999999999999999999999998887666666666777 666555


Q ss_pred             EEC-CeEEEEECCC
Q 008041          176 TAA-GQLKTFNCSD  188 (579)
Q Consensus       176 ~~~-~~i~vwd~~~  188 (579)
                      +.. |.+.--....
T Consensus       153 a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  153 AITAGAVLAVTKNP  166 (354)
T ss_pred             EeccceEEEEccCC
Confidence            544 6554444433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=1.4e-05  Score=82.54  Aligned_cols=193  Identities=17%  Similarity=0.203  Sum_probs=128.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +|++.+..++.|+.||.|.+.+- +-+..+.|+.+...+....+...                          +..++++
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~--------------------------~~~~L~s   82 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN--------------------------KQNFLFS   82 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc--------------------------CceEEEE
Confidence            78999999999999998888763 34444666655444222222211                          1345555


Q ss_pred             EECCC-----eEEEEEccCC------eEE--EEec----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe--CCC--Cc
Q 008041           92 GTGGG-----DVLALAVSAG------QLK--WRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLT--GS  150 (579)
Q Consensus        92 ~~~~g-----~i~iwd~~~~------~~~--~~~~----~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd--~~~--~~  150 (579)
                      ...|+     .+++|++..-      .++  .++.    .....++.+++.+.+-+.+++|-.||.|..+.  +..  |.
T Consensus        83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs  162 (933)
T KOG2114|consen   83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS  162 (933)
T ss_pred             EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence            54443     3999998642      222  1111    12356789999999988999999999999884  221  22


Q ss_pred             eeeEeecCCCCeeEEEEccCCCE--EEEECCeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          151 LLGKFRASTKGISCMAVSSDGKM--LATAAGQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~--l~~~~~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      ...-......+|+.+++..+++.  +++....|.+|.+....+ ...+..|..++.|-.|++....+++++  +..+.+|
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY  240 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFY  240 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEE
Confidence            22222234559999999999887  444459999999984432 445677788899999987665466654  5689999


Q ss_pred             EcCCCc
Q 008041          228 RTDGVK  233 (579)
Q Consensus       228 d~~~~~  233 (579)
                      +....+
T Consensus       241 ~sd~~~  246 (933)
T KOG2114|consen  241 DSDGRG  246 (933)
T ss_pred             cCCCcc
Confidence            988654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=1.6e-07  Score=86.52  Aligned_cols=141  Identities=15%  Similarity=0.264  Sum_probs=107.4

Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeeEeecCCCCeeE
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~  164 (579)
                      ++.+.+-.|-+-|+.+|-..  .+. ..+.|.++.|+..++.++.|+.+|.|..+|++.+     .+...+. |...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~q--sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ--SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccccc--ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            44555566788888777542  222 4567999999998999999999999999999864     3344444 7888999


Q ss_pred             EEEcc-CCCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEE--EEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       165 l~~~p-~g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~l--~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      +..-. ++++|.+.+  |.|++||++--++   ++++.||.+.-.-+  -+.+....++++| +|...++|.++.+...
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence            88776 666666666  9999999997766   89999997654443  3456667888877 7999999999998754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.58  E-value=2.2e-05  Score=73.62  Aligned_cols=194  Identities=19%  Similarity=0.290  Sum_probs=132.5

Q ss_pred             CcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEE--EEEEccCCCEEEEEe-----CCCcEEEEeCC-CCceeeEee
Q 008041           86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVS--AISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~l~s~~-----~d~~v~iwd~~-~~~~~~~~~  156 (579)
                      ...++++-.=|+ ..+||+.+++....+.. ..+.-.  --.|++||++|++.=     ..|.|-+||.. +.+.+..|.
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~   95 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP   95 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence            556777777777 88999999988755532 122111  247999999999863     45789999998 667888898


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-C-------------------eEEEEECCCCeeeEE--e--ecCCCCEEEEEEecCCC
Q 008041          157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-~-------------------~i~vwd~~~~~~~~~--~--~~h~~~v~~l~~s~~~~  212 (579)
                      .+.-....+.+.|||+.|+++. |                   ++...|..+|+.+.+  +  .-|...|..+++.++|.
T Consensus        96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen   96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence            8877888999999998888775 1                   355567788887766  4  34778899999999987


Q ss_pred             EEEEEecCCCe-------EEEEEcCCCccccceeeeee-----ecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEE
Q 008041          213 YVLSSAVGERY-------IALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW  279 (579)
Q Consensus       213 ~l~s~~~~d~~-------i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw  279 (579)
                      .++.. ...+-       |-+++....  .   ..+..     ..-...+.+++++     +++.++++.+- -|++.+|
T Consensus       176 V~~a~-Q~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  176 VAFAM-QYQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             EEEEE-ecCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence            55443 23331       233332221  1   00111     1122455667776     88888877765 6799999


Q ss_pred             EcCCceeecccC
Q 008041          280 YGQNIEELRNTK  291 (579)
Q Consensus       280 d~~~~~~~~~~~  291 (579)
                      |..+++.+....
T Consensus       245 d~~tg~~~~~~~  256 (305)
T PF07433_consen  245 DAATGRLLGSVP  256 (305)
T ss_pred             ECCCCCEeeccc
Confidence            999998876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.55  E-value=1.7e-06  Score=89.56  Aligned_cols=183  Identities=15%  Similarity=0.223  Sum_probs=134.0

Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      ++..++.|+-...+..+|+.+.+......- ..+.|+-++.  +++.+++|...|+|.+-|..+.+.+.+|.+|.+.|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            466788888888899999999887654422 2334666665  7789999999999999999999999999999999976


Q ss_pred             EEEccCCCEEEEEC-----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCC
Q 008041          165 MAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       165 l~~~p~g~~l~~~~-----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      +..  .|+.|++++           .-|+|||++..+.+.-+.-+.++ .-+.|+|.= ..+++++ ..|...+-|..+.
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL  298 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence            665  588999887           14899999988877666656555 567888853 3455555 5788888884433


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      .... ..++........+....++     ++|..++.|..+|.|.+|-
T Consensus       299 sNP~-~~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  299 SNPP-AGVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCc-cceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence            2111 1122222222335666676     8999999999999999997

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.52  E-value=4.7e-07  Score=57.72  Aligned_cols=39  Identities=23%  Similarity=0.604  Sum_probs=36.3

Q ss_pred             CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ++++.++.+|.++|.+++|+|++.+|++++ .|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            467889999999999999999999999998 799999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.51  E-value=0.00017  Score=65.66  Aligned_cols=195  Identities=12%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             EEEEECCCeEEEEEccCCe--EEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC------
Q 008041           89 LVLGTGGGDVLALAVSAGQ--LKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------  158 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~--~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------  158 (579)
                      +++...|..|.|-..+.+-  .+.  .+.+.....-.-++|+||+..|+.+...|+|++||+.. ..+..+...      
T Consensus        11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d   89 (282)
T PF15492_consen   11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGD   89 (282)
T ss_pred             EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCc
Confidence            4555556666666555421  111  23233334567899999999999999999999999864 433343321      


Q ss_pred             -CCCeeEEEEccCC-------CEEEEEC-CeEEEEECCC-----CeeeEEee---cCCCCEEEEEEecCCCEEEEEecCC
Q 008041          159 -TKGISCMAVSSDG-------KMLATAA-GQLKTFNCSD-----HKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       159 -~~~v~~l~~~p~g-------~~l~~~~-~~i~vwd~~~-----~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                       ...|..+.|.+--       .+++... |.++-|-+..     .+...+|.   .+...|.++.++|..+.|+++|...
T Consensus        90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~  169 (282)
T PF15492_consen   90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ  169 (282)
T ss_pred             cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence             2356666665421       3455544 7666665422     23333332   2467899999999999888877533


Q ss_pred             C----------eEEEEEcCCCcccc---------------ceeeeee---------ecCceeEEeEEecCCcccCCCcEE
Q 008041          222 R----------YIALWRTDGVKKQS---------------ASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       222 ~----------~i~vwd~~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                      .          -+..|.+-.+..--               ....+.+         ......+--+..     +|||..|
T Consensus       170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----SPdg~~L  244 (282)
T PF15492_consen  170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----SPDGSLL  244 (282)
T ss_pred             CCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE-----CCCCCEE
Confidence            3          25667654432110               0000000         011112222333     3999999


Q ss_pred             EEEEcCCeEEEEEcCCceeecc
Q 008041          268 LAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       268 ~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                      |+...+|.|.+|++.+.++.+.
T Consensus       245 a~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  245 ACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             EEEEcCCeEEEEecCcchhhcc
Confidence            9999999999999998877654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.49  E-value=1.4e-06  Score=77.38  Aligned_cols=148  Identities=13%  Similarity=0.170  Sum_probs=93.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcee-eEeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCC
Q 008041          128 HGSCIYSAGADGMVCEIDPLTGSLL-GKFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHP  199 (579)
Q Consensus       128 ~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~  199 (579)
                      -++.+++++.||.+.+++.+.-..+ +.+......-.+.++...++.+.++.       +..+.|+++..+.+..-....
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            3557899999999999997642111 11111111222334445667777665       456777776544322222222


Q ss_pred             CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041          200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       200 ~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw  279 (579)
                      ..|++++-+|..+.++.+|.+||.+.+||.+.....   ...-..|...+....+..     .++..|+++++||.+.-|
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHp-----k~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHP-----KNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccC-----CCchheeEecCCCcEEEE
Confidence            348999999988877777779999999999987432   111122444444444443     577899999999999999


Q ss_pred             EcCC
Q 008041          280 YGQN  283 (579)
Q Consensus       280 d~~~  283 (579)
                      |..+
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            9765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=2.8e-06  Score=85.56  Aligned_cols=156  Identities=12%  Similarity=0.134  Sum_probs=120.3

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------ceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008041          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG---------------SLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~---------------~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--  178 (579)
                      ......|+.|+.+..++++|+.||.+++.-+.+.               ..-+++.+|...|.-+.|+.+.+.+-+.+  
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4456889999999999999999999999876542               12356789999999999999888888887  


Q ss_pred             CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEec
Q 008041          179 GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID  256 (579)
Q Consensus       179 ~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (579)
                      |.|.+|-+-.|.-...+  ....+.|.++.|+.||..+...- .||.|.+=.++....      +..+-.......+.|+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY-eDGavIVGsvdGNRI------wgKeLkg~~l~hv~ws  165 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY-EDGAVIVGSVDGNRI------WGKELKGQLLAHVLWS  165 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE-ccCCEEEEeecccee------cchhcchheccceeec
Confidence            99999998877654433  23457799999999999988875 799998877776542      2222223333455666


Q ss_pred             CCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          257 NGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                           +|.+.++.+-.+|.+++||.+.
T Consensus       166 -----~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  166 -----EDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             -----ccHHHHHhhhcCCcEEEecccc
Confidence                 8989988898999999999653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.1e-05  Score=82.10  Aligned_cols=188  Identities=12%  Similarity=0.159  Sum_probs=128.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeE
Q 008041           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      .||++.-.|+|.+||...+..+..++.+..                  .+..+.|.+.....     ..++++-.....+
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~------------------~~qdl~W~~~rd~S-----rd~LlaIh~ss~l  137 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSND------------------SVQDLCWVPARDDS-----RDVLLAIHGSSTL  137 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCc------------------chhheeeeeccCcc-----hheeEEecCCcEE
Confidence            567777789999999999988887765443                  33456666654331     3567777788889


Q ss_pred             EEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCceeeEeecCCC----------
Q 008041           99 LALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-------TGSLLGKFRASTK----------  160 (579)
Q Consensus        99 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~-------~~~~~~~~~~~~~----------  160 (579)
                      .+||..+|+..++...+| ....|+.+.| |.+.+..-+..|.|.+.+.-       .|+.++.-..|..          
T Consensus       138 vLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at  216 (1062)
T KOG1912|consen  138 VLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT  216 (1062)
T ss_pred             EEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence            999999999998875544 4677899998 66667777777877776642       1233322222211          


Q ss_pred             ---------------CeeEEEEccCCCEEEE-EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC--EEEEEecCC
Q 008041          161 ---------------GISCMAVSSDGKMLAT-AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK--YVLSSAVGE  221 (579)
Q Consensus       161 ---------------~v~~l~~~p~g~~l~~-~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~~d  221 (579)
                                     .....+|+|.-+.++. .- ..+.++|++-..++....-..+.+.-+.+-|+++  .|++. ..|
T Consensus       217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl-H~n  295 (1062)
T KOG1912|consen  217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL-HSN  295 (1062)
T ss_pred             cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE-ecC
Confidence                           0113466775443333 33 8999999998888877766667777788888764  45554 479


Q ss_pred             CeEEEEEcCC
Q 008041          222 RYIALWRTDG  231 (579)
Q Consensus       222 ~~i~vwd~~~  231 (579)
                      |.+.+|--+.
T Consensus       296 G~ltirvrk~  305 (1062)
T KOG1912|consen  296 GRLTIRVRKE  305 (1062)
T ss_pred             CeEEEEEeec
Confidence            9999997654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.44  E-value=6.9e-07  Score=56.95  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041          108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus       108 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd  145 (579)
                      ++..+ .+|.++|++++|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            44344 78999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.5e-05  Score=75.32  Aligned_cols=239  Identities=14%  Similarity=0.098  Sum_probs=136.5

Q ss_pred             CCCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ....||++  +|||..+ ++..++.+.+|+|.|+++..++..+..+                   ...-+++|.-.+   
T Consensus       192 ~g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------------------~~~wSC~wDlde---  247 (463)
T KOG1645|consen  192 EGSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------------NQIWSCCWDLDE---  247 (463)
T ss_pred             cchhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-------------------CCceeeeeccCC---
Confidence            44668888  9999887 7888999999999999998887766533                   233455665544   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecC--CCCCCEEEEEEcc------CCCEEEEEeCCCcEEEEeCC--CCc
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFAT------HGSCIYSAGADGMVCEIDPL--TGS  150 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~------~~~~l~s~~~d~~v~iwd~~--~~~  150 (579)
                           ..+|+.|..+|.|.+||++..+.....+.  -...+|..++.-+      .|..++..+.+  ...|++.  .+.
T Consensus       248 -----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~  320 (463)
T KOG1645|consen  248 -----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC  320 (463)
T ss_pred             -----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence                 67899999999999999987553211111  1233455444322      33334333333  4556543  122


Q ss_pred             eeeEee-cCCCCeeEEEEccCCCEEEEEC---------CeEEE-EECCCCeeeEEe-ecCCC-C---E---EEEEEecCC
Q 008041          151 LLGKFR-ASTKGISCMAVSSDGKMLATAA---------GQLKT-FNCSDHKKMQKF-SGHPG-A---V---RFMTFSDNG  211 (579)
Q Consensus       151 ~~~~~~-~~~~~v~~l~~~p~g~~l~~~~---------~~i~v-wd~~~~~~~~~~-~~h~~-~---v---~~l~~s~~~  211 (579)
                      ...+.. +..+.+.++..++..+.++...         ..|-. -|-..|..+... .++.+ +   +   ..+.-.++.
T Consensus       321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            222221 2345666777777556655543         11211 122344333222 12211 1   1   112224566


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcC
Q 008041          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~  282 (579)
                      ++++..+...+.+.+||+.+.+..     .++.-.........+.     -++ .+|++- .|..++||..+
T Consensus       401 n~iv~~gd~tn~lil~D~~s~evv-----Q~l~~~epv~Dicp~~-----~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGDSTNELILQDPHSFEVV-----QTLALSEPVLDICPND-----TNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecCCcceeEEeccchhhee-----eecccCcceeecceee-----cCCcchhhhe-ecceEEEEecC
Confidence            777777766688999999987633     4444444445544443     333 455544 45678888644

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1.5e-06  Score=80.20  Aligned_cols=155  Identities=10%  Similarity=0.093  Sum_probs=110.4

Q ss_pred             EEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           11 TSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      |+||-+  |-. ++.+.+..|-+-|+++|... .|. ..+.+....|+..                           +++
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s---------------------------~nL  266 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGS---------------------------DNL  266 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhccc---------------------------CCe
Confidence            356543  333 44455667888888877543 233 3344444444443                           788


Q ss_pred             EEEEECCCeEEEEEccCC-----eEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce---eeEeecCC
Q 008041           89 LVLGTGGGDVLALAVSAG-----QLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSL---LGKFRAST  159 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~  159 (579)
                      ++.|..+|.|..+|++.+     .+...+  -|.+.|+++..-. +++++++.+.+|+|++||++--++   +..+.+|-
T Consensus       267 v~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv  344 (425)
T KOG2695|consen  267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV  344 (425)
T ss_pred             eEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence            999999999999999875     233333  3889999998777 788899999999999999987666   88888887


Q ss_pred             CC--eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041          160 KG--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       160 ~~--v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~  197 (579)
                      +.  ..-+.+.+....+++++  ...++|.++.+..+.+++-
T Consensus       345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            63  22334456556666666  6789999999999888763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.43  E-value=9.4e-05  Score=74.77  Aligned_cols=217  Identities=11%  Similarity=0.102  Sum_probs=117.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -.+.++|+|++++.++ ||.-.|+.....+....-                       ......|.+          .+.
T Consensus        36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G-----------------------~g~~~vw~~----------~n~   81 (443)
T PF04053_consen   36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFG-----------------------SGLSFVWSS----------RNR   81 (443)
T ss_dssp             SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEE-----------------------E-SEEEE-T----------SSE
T ss_pred             eeEEECCCCCEEEEEc-CCEEEEEEccCCcccccC-----------------------ceeEEEEec----------Ccc
Confidence            3459999999999866 788888885544443211                       233566766          234


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++-..++.|.++.--+++....+...  ..+..+-.   |..|...+.+ .|.+||..+++.++.+...  +|..+.|+
T Consensus        82 yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen   82 YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred             EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence            777777888999743333222222211  23444433   7777766544 8999999999999998743  48999999


Q ss_pred             cCCCEEEEEC-CeEEEEECCCC-----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          169 SDGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       169 p~g~~l~~~~-~~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      ++|++++..+ ..+++++....           ..+..+..-...|.+..|..+ -++++ . .. .++.  +..++.. 
T Consensus       154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T-~~-~lkY--l~~Ge~~-  226 (443)
T PF04053_consen  154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-T-SN-HLKY--LVNGETG-  226 (443)
T ss_dssp             TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---TT-EEEE--EETTEEE-
T ss_pred             CCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-c-CC-eEEE--EEcCCcc-
Confidence            9999999988 78888875433           023333333567889999876 34444 3 23 6776  4444422 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                        .+..+   +..+..+...     +....+.....|+.+..+.++..
T Consensus       227 --~i~~l---d~~~yllgy~-----~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  227 --IIAHL---DKPLYLLGYL-----PKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             --EEEE----SS--EEEEEE-----TTTTEEEEE-TT--EEEEE--HH
T ss_pred             --eEEEc---CCceEEEEEE-----ccCCEEEEEECCCCEEEEEECHH
Confidence              23333   3333344443     55677888888888887765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.39  E-value=1.2e-06  Score=88.37  Aligned_cols=199  Identities=21%  Similarity=0.287  Sum_probs=130.7

Q ss_pred             CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.+|+++  -|.|.. ..+|+++.|..+..||+++-.. +..+...                  ....+-+.|...+|. 
T Consensus       114 sraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w------------------~s~asqVkwnyk~p~-  172 (1081)
T KOG0309|consen  114 SRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW------------------RSAASQVKWNYKDPN-  172 (1081)
T ss_pred             ccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeecc------------------cccCceeeecccCcc-
Confidence            4667555  888865 5889999999999999986542 2222111                  123345667665544 


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEee-cC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFR-AS  158 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~  158 (579)
                              +++.+....|.+||.+.|.......++|...|..+.|+.- ...+.+++.|++|+.||........... ..
T Consensus       173 --------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  173 --------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             --------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence                    5666677779999999887655556789999999999763 2358899999999999976443222211 12


Q ss_pred             CCCeeEEEEccCCCEEEE----ECCeEEE---------EECCC-CeeeEEeecCCCCEEEEEEec--------CCC--EE
Q 008041          159 TKGISCMAVSSDGKMLAT----AAGQLKT---------FNCSD-HKKMQKFSGHPGAVRFMTFSD--------NGK--YV  214 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~----~~~~i~v---------wd~~~-~~~~~~~~~h~~~v~~l~~s~--------~~~--~l  214 (579)
                      ..+|..-.+.|=|+-...    |++.+.+         |++.+ .+.+.+|.||...|....|-.        |.+  .|
T Consensus       245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL  324 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL  324 (1081)
T ss_pred             cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence            336666666665443222    2233333         33333 356889999999887766632        222  46


Q ss_pred             EEEecCCCeEEEEEcCC
Q 008041          215 LSSAVGERYIALWRTDG  231 (579)
Q Consensus       215 ~s~~~~d~~i~vwd~~~  231 (579)
                      ++=+ .|.++++|-+..
T Consensus       325 VTWS-kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  325 VTWS-KDQTLRLWPIDS  340 (1081)
T ss_pred             EEee-cCCceEeeeccH
Confidence            6665 899999998754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=2.6e-07  Score=94.88  Aligned_cols=184  Identities=15%  Similarity=0.100  Sum_probs=128.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .|++||-+.++|+.|+..|.|++|++.+|.......+|.++++.+.-+.+                           +..
T Consensus      1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d---------------------------gs~ 1157 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD---------------------------GST 1157 (1516)
T ss_pred             eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC---------------------------cce
Confidence            57799999999999999999999999999998888888887765444433                           444


Q ss_pred             EEEEE-CCC-eEEEEEccCCeEEEEecCCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ec---CCCC
Q 008041           89 LVLGT-GGG-DVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RA---STKG  161 (579)
Q Consensus        89 l~~~~-~~g-~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~---~~~~  161 (579)
                      .++.+ .+. ...+|+...--.     ..|+ ..-.++.|+...+.-+.|..-....+||++++....++ .+   ....
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~-----~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGG-----PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred             eeeeccccCchHHHhccccccC-----ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence            44433 333 378899875221     1132 23567888775544344444456889999999877763 32   1123


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      -++..|+|+.++++--+   .+||++..+.++.|...+.. ..=.|+|.|..++.-+      .|||+++-+.
T Consensus      1233 ~n~a~FsP~D~LIlndG---vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS------EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILNDG---VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS------EIWDMRTFKL 1295 (1516)
T ss_pred             ccccccCCCcceEeeCc---eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec------hhhhhHHHHH
Confidence            37889999988776443   68999988888777654422 2347999999888754      4899998653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=2.5e-05  Score=80.19  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=117.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+++.|+.+|.|++++.+..- . +. ..|...      ..+|.++++|+.||+|.+..+.+.+...++. ...++.++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi  118 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI  118 (846)
T ss_pred             cceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence            6789999999999999987653 1 11 235443      5689999999999999999998888777665 35689999


Q ss_pred             EEccC-----CCEEEEEC--CeEEEEECCC-C-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          166 AVSSD-----GKMLATAA--GQLKTFNCSD-H-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       166 ~~~p~-----g~~l~~~~--~~i~vwd~~~-~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      +++|+     .+.+++|+  | +.++.-+- | +.-..+....++|.++.|.  |.+++-+. ++| |++||...++...
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~G-v~vyd~~~~~~l~  193 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDG-VKVYDTPTRQRLT  193 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCC-cEEEeccccceee
Confidence            99997     57888888  6 77765331 1 1111355567999999996  67888875 454 9999998876431


Q ss_pred             ce-eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          237 AS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      .. .......++.......|.      +...|+. +...+|+|..++
T Consensus       194 ~i~~p~~~~R~e~fpphl~W~------~~~~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  194 NIPPPSQSVRPELFPPHLHWQ------DEDRLVI-GWGDSVKICSIK  233 (846)
T ss_pred             ccCCCCCCCCcccCCCceEec------CCCeEEE-ecCCeEEEEEEe
Confidence            00 000111122222334453      3344444 444578888776

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.33  E-value=0.00016  Score=75.40  Aligned_cols=234  Identities=18%  Similarity=0.232  Sum_probs=137.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccc-cccccccccccccccceEEeeecccccccccCCcEEEEEE---
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTS-LYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT---   93 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~---   93 (579)
                      ..++.++.+|.|.-+|.++|+.+..+.......... .-+.+            ..            .+..+++++   
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP------------~v------------~~~~v~vg~~~~  166 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP------------TI------------VKKLVIIGSSGA  166 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC------------EE------------ECCEEEEecccc
Confidence            577778889999999999999998876332110000 00000            00            034455654   


Q ss_pred             ------CCCeEEEEEccCCeEEEEecCCCCC-------------------CE-EEEEEccCCCEEEEEeCCC--------
Q 008041           94 ------GGGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG--------  139 (579)
Q Consensus        94 ------~~g~i~iwd~~~~~~~~~~~~~h~~-------------------~V-~~l~~~~~~~~l~s~~~d~--------  139 (579)
                            .+|.++.+|..+|+.+++.......                   .| ....+.+.+..++.++.++        
T Consensus       167 ~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~  246 (488)
T cd00216         167 EFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGR  246 (488)
T ss_pred             ccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCc
Confidence                  3578999999999998876432211                   11 1234455566777777665        


Q ss_pred             ----------cEEEEeCCCCceeeEeecCCCCe------eEEEEc----cCCC---EEEEEC--CeEEEEECCCCeeeEE
Q 008041          140 ----------MVCEIDPLTGSLLGKFRASTKGI------SCMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       140 ----------~v~iwd~~~~~~~~~~~~~~~~v------~~l~~~----p~g~---~l~~~~--~~i~vwd~~~~~~~~~  194 (579)
                                .|.-+|..+|+.+..++......      ....+.    -+|.   .++.++  |.++.+|.++|+.+..
T Consensus       247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence                      79999999999988765321111      111111    1343   455554  8999999999998876


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEe-----------------cCCCeEEEEEcCCCccccceeeeeeecC---------ce
Q 008041          195 FSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEHP---------AV  248 (579)
Q Consensus       195 ~~~h~~~v~~l~~s~~~~~l~s~~-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~  248 (579)
                      .....   ..+..+| + .++..+                 ..++.+.-.|..+++..     ......         ..
T Consensus       327 ~~~~~---~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~-----W~~~~~~~~~~~~~g~~  396 (488)
T cd00216         327 RPEVE---QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV-----WEKREGTIRDSWNIGFP  396 (488)
T ss_pred             eEeec---cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-----eEeeCCccccccccCCc
Confidence            54211   1123333 2 222211                 13567888888887643     222111         00


Q ss_pred             eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      .......      ..+..|++++.||.++.+|.++|+.+-..+
T Consensus       397 ~~~~~~~------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         397 HWGGSLA------TAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             ccCcceE------ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            0000000      245788899999999999999999886554

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.31  E-value=0.00068  Score=67.65  Aligned_cols=304  Identities=12%  Similarity=0.084  Sum_probs=146.3

Q ss_pred             ccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        14 spdg~~lasg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      |||+++++...         ..+.+.|||+.+++.......                   ........|.|.        
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------------------~~~~~~~~~sP~--------   53 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------------------PPKLQDAKWSPD--------   53 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------------------ETTBSEEEE-SS--------
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------------------ccccccceeecC--------
Confidence            78999888742         246789999999876653321                   123334555554        


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCC----------------CCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAG-ADGMVCEIDPL  147 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h----------------~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~  147 (579)
                       +..++... +++|++++..++........+-                -+.-.++.|+|||++|+... .+..|..+.+.
T Consensus        54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~  131 (353)
T PF00930_consen   54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP  131 (353)
T ss_dssp             -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred             -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence             45555554 5789999988886554333330                11235678999999987765 34444444431


Q ss_pred             CCceeeEeecCCC---CeeEEEEccCCCEEEEECCeEEEEECCCCeeeE-Eee----cCCCCEEEEEEecCCCEEEE-Ee
Q 008041          148 TGSLLGKFRASTK---GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KFS----GHPGAVRFMTFSDNGKYVLS-SA  218 (579)
Q Consensus       148 ~~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~-~~~----~h~~~v~~l~~s~~~~~l~s-~~  218 (579)
                      .      +.....   .+..+.+---|.--  ..-.+.++|+.+++... ...    .-...+..+.|.++++.++. -.
T Consensus       132 ~------~~~~~~~yp~~~~~~YPk~G~~n--p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~  203 (353)
T PF00930_consen  132 D------YSPPDSQYPEVESIRYPKAGDPN--PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL  203 (353)
T ss_dssp             E------ESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred             c------cCCccccCCcccccccCCCCCcC--CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence            1      111111   22333332111111  01257788998886532 111    23456889999999983333 32


Q ss_pred             cCCC---eEEEEEcCCCccccceeeeeeecCcee---EEeEEecCCcccCCCcEEEEEEcCC--eEEEEEcCCceeeccc
Q 008041          219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRNT  290 (579)
Q Consensus       219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~  290 (579)
                      ..+.   .+.++|..++...   .+........+   .....+.    ..++.++.....||  +|++++...+.... +
T Consensus       204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~~~-l  275 (353)
T PF00930_consen  204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKPRQ-L  275 (353)
T ss_dssp             ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEEEE-S
T ss_pred             ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEcccccceec-c
Confidence            2222   4666777776533   22222222211   1122221    03445555555677  56666776665322 2


Q ss_pred             CCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008041          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s  369 (579)
                      ......+.....+..+++.   ..++|..++   +..-++...... .....+.+...........|||||++++.++|
T Consensus       276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            2112112111112223221   333443322   223344444322 12333444444433358999999999855554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00011  Score=75.62  Aligned_cols=173  Identities=10%  Similarity=0.140  Sum_probs=124.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+++|+.|.-+|.|++++.... ....+. |...                           +.      .+.++++|+.|
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~-~~~~~~-~s~~---------------------------~~------~Gey~asCS~D   92 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGN-PKTNFD-HSSS---------------------------IL------EGEYVASCSDD   92 (846)
T ss_pred             hcceeeeccccceEEEEecCCc-cccccc-cccc---------------------------cc------CCceEEEecCC
Confidence            3679999999999999987633 222221 1110                           11      28899999999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCC---CCceeeEeecCCCCeeEEEE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL---TGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~l~~  167 (579)
                      |+|.|-.+-+.+....+  ....++.+++++|+     .+++++|+.-| +.++.-.   ....+ ......++|.++.|
T Consensus        93 Gkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen   93 GKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW  168 (846)
T ss_pred             CcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe
Confidence            99999999888775444  24468999999997     46799999888 7776521   11222 35556789999999


Q ss_pred             ccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCE------EEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          168 SSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAV------RFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       168 ~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v------~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .  |+++|-++ --|++||+.+++.+..++.....+      ..+.|.++. .|+.|  +..+|++..++.+
T Consensus       169 ~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG--W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  169 R--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG--WGDSVKICSIKKR  235 (846)
T ss_pred             c--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe--cCCeEEEEEEecc
Confidence            7  88999998 679999999988877665333322      356787765 45555  6678999999843

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.26  E-value=1.8e-05  Score=82.22  Aligned_cols=179  Identities=16%  Similarity=0.188  Sum_probs=124.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..+..|+--..+..+|..+++..+...-..+                  .++.+..           ++..+..|...
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~------------------~v~imR~-----------Nnr~lf~G~t~  196 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS------------------GVTIMRY-----------NNRNLFCGDTR  196 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCC------------------ceEEEEe-----------cCcEEEeeccc
Confidence            345566676666777888888776654321111                  1111111           26889999999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      |+|.+-|+.+.+.+.++ .+|++.|.++..  .|+.+++||.         |.-|++||++..+.+.-+.-+.++ .-+.
T Consensus       197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr  272 (1118)
T KOG1275|consen  197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR  272 (1118)
T ss_pred             ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence            99999999999998777 789999998776  6889999874         455899999877766555544443 4567


Q ss_pred             EccCC-CEEEEEC--CeEEEEECC---CC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          167 VSSDG-KMLATAA--GQLKTFNCS---DH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       167 ~~p~g-~~l~~~~--~~i~vwd~~---~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      |+|.- ..+++++  |...+-|..   +. ..+..+......+..+.++++|..++.+- .+|.|.+|.
T Consensus       273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa  340 (1118)
T KOG1275|consen  273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA  340 (1118)
T ss_pred             hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence            78742 2333333  899888833   32 11223333445589999999999999876 799999998

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=5.7e-06  Score=79.07  Aligned_cols=201  Identities=10%  Similarity=0.056  Sum_probs=139.7

Q ss_pred             CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec--CCC
Q 008041           86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA--STK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~--~~~  160 (579)
                      ..++..++.||.++.|-...  +-........|.+.|.+++.+.+|..+.|.+. |..++++|+.+...+.-++-  ..+
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg   99 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG   99 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence            67899999999999998765  32222334678889999999999999999777 99999999987765543332  122


Q ss_pred             CeeEEEEccCC--CEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC-
Q 008041          161 GISCMAVSSDG--KMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV-  232 (579)
Q Consensus       161 ~v~~l~~~p~g--~~l~~~~---~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~-  232 (579)
                      .+. ...+|..  ..++++.   +.|.++|-...-  ....-.-|.++|..+.+.+.+..+++.. ..|.|.-|..... 
T Consensus       100 ~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~  177 (558)
T KOG0882|consen  100 FAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF  177 (558)
T ss_pred             ceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence            221 2222221  1444444   899999977543  2333356899999999999999888764 6799999998741 


Q ss_pred             ccccceeee---------eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          233 KKQSASCVL---------AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       233 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      +.......+         ..........+..|+     |+|..+.+-+.|..|++|+..+++.++.++..
T Consensus       178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            111111111         122223345566676     99999999999999999999999988766543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.20  E-value=0.00058  Score=61.19  Aligned_cols=186  Identities=15%  Similarity=0.147  Sum_probs=119.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+++.|+..+.+.--|.++|+.+++..-+  .++-+-+.- -|++++.|+..|.+++.+..+|.....|...+.-=...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            577999999999999999999998876543  333332222 36789999999999999999998888877544322334


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      ...+++..+..|+  ++.+..|.++..++.+.+...+...+-+..| ++...++ . ..|.+---........   ....
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~-t~G~vlavt~~~~~~~---~~w~  174 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-I-TAGAVLAVTKNPYSST---EFWA  174 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-e-ccceEEEEccCCCCcc---eehh
Confidence            5678899999998  8999999999988887664444344445556 4443333 3 3454443333332111   1111


Q ss_pred             eecCceeEEe-EEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      .......... .+.        +..+..++.||.+.-|+ +.|+++.
T Consensus       175 ~~~~~PiF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvw  212 (354)
T KOG4649|consen  175 ATRFGPIFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVW  212 (354)
T ss_pred             hhcCCccccCceec--------cceEEEEEeccEEEEEc-CCCcEEE
Confidence            1111111111 111        35566677788888887 6666665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.13  E-value=0.00052  Score=74.15  Aligned_cols=193  Identities=13%  Similarity=0.178  Sum_probs=126.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +++.|-.+++-++.+..+|.|.+-|..+.....                   .|.....+.+..|.+.         ...
T Consensus        72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------vg~vd~GI~aaswS~D---------ee~  123 (1265)
T KOG1920|consen   72 VSVQFLADTNSICVITALGDIILVDPETLELEI-------------------VGNVDNGISAASWSPD---------EEL  123 (1265)
T ss_pred             EEEEEecccceEEEEecCCcEEEEcccccceee-------------------eeeccCceEEEeecCC---------CcE
Confidence            666888888888888899999988877665432                   1444556777888775         667


Q ss_pred             EEEEECCCeEEEEEc----cCCeEE-------------------EEecCC---------------------CCCCEEEEE
Q 008041           89 LVLGTGGGDVLALAV----SAGQLK-------------------WRLSDC---------------------HPGGVSAIS  124 (579)
Q Consensus        89 l~~~~~~g~i~iwd~----~~~~~~-------------------~~~~~~---------------------h~~~V~~l~  124 (579)
                      ++..+..+++.+-.-    -..+.+                   .++ .|                     ..+.=+++.
T Consensus       124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is  202 (1265)
T KOG1920|consen  124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALEQIEQDDHKTSIS  202 (1265)
T ss_pred             EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceee-ecchhhhcccccccccccccchhhccCCceEE
Confidence            888888887665432    111000                   011 00                     011224589


Q ss_pred             EccCCCEEEEEe----CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---
Q 008041          125 FATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---  191 (579)
Q Consensus       125 ~~~~~~~l~s~~----~d-~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~---  191 (579)
                      |..||++|++..    .+ ..+++||-+ |..-.+-....+.-.+++|-|.|..+++-.     +.|.+|. ++|-.   
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccc
Confidence            999999988732    34 789999965 544333222333446899999999999865     5688886 34422   


Q ss_pred             -eEEeecCCCCEEEEEEecCCCEEEE---EecCCCeEEEEEcCCCc
Q 008041          192 -MQKFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK  233 (579)
Q Consensus       192 -~~~~~~h~~~v~~l~~s~~~~~l~s---~~~~d~~i~vwd~~~~~  233 (579)
                       ...++....+|..++|+.++..|+.   .. ....|++|-+.+-.
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence             2223334455899999999998877   33 34459999887653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.12  E-value=0.00062  Score=70.10  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCC----C-ceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------
Q 008041          126 ATHGSCIYSAGADGMVCEIDPLT----G-SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------  191 (579)
Q Consensus       126 ~~~~~~l~s~~~d~~v~iwd~~~----~-~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~------  191 (579)
                      .++|++...  .++.|.+.|..+    + +.+..+.. ......+.++|||+++++++   +++.|+|+.+.+.      
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            457887665  367899999987    3 44555553 45678999999999999988   7999999987552      


Q ss_pred             ------eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          192 ------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       192 ------~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                            +.+..--.+| ...+|.++|....+- .-|..|-.|++..
T Consensus       362 ~~~~~vvaevevGlGP-LHTaFDg~G~aytsl-f~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELGLGP-LHTAFDGRGNAYTTL-FLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccCCCc-ceEEECCCCCEEEeE-eecceeEEEehHH
Confidence                  3333333333 456899998755554 4789999999876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.10  E-value=3.8e-05  Score=70.08  Aligned_cols=192  Identities=15%  Similarity=0.151  Sum_probs=122.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCe-EEEEe---cCCCC------------CCEEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQ-LKWRL---SDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~-~~~~~---~~~h~------------~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~  147 (579)
                      +.++++|...|.|.+|.-.... +..++   +++|.            ..|..+.|..++.  .++..+.|.+|++|-+.
T Consensus        38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy  117 (460)
T COG5170          38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY  117 (460)
T ss_pred             cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence            7788888888999999866433 22211   24443            2478888876553  47777899999999875


Q ss_pred             CCce------------------------------------------eeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEE
Q 008041          148 TGSL------------------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKT  183 (579)
Q Consensus       148 ~~~~------------------------------------------~~~~-~~~~~~v~~l~~~p~g~~l~~~~-~~i~v  183 (579)
                      ....                                          .+.+ ..|.-.+.++.++.|...+++++ =.|.+
T Consensus       118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL  197 (460)
T COG5170         118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL  197 (460)
T ss_pred             cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence            3210                                          0001 24556788999999999999999 79999


Q ss_pred             EECCCCee---eEEeecCC-----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc-ceeeeee--e-------
Q 008041          184 FNCSDHKK---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAM--E-------  244 (579)
Q Consensus       184 wd~~~~~~---~~~~~~h~-----~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~-~~~~~~~--~-------  244 (579)
                      |++.-...   +..++.|.     .-|++..|+|... .+..++ ..|.|++-|++....-. ....+..  .       
T Consensus       198 Wnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff  276 (460)
T COG5170         198 WNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF  276 (460)
T ss_pred             ccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhH
Confidence            99874322   33344454     3578889999654 334444 58999999998542110 0001111  0       


Q ss_pred             -cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          245 -HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                       .....++-..|+     ++|+++++-+. -++++||....
T Consensus       277 ~eivsSISD~kFs-----~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         277 EEIVSSISDFKFS-----DNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             HHHhhhhcceEEc-----CCCcEEEEecc-ceEEEEecccc
Confidence             111234445555     99999987665 58999997644

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.09  E-value=0.0024  Score=65.90  Aligned_cols=177  Identities=11%  Similarity=0.099  Sum_probs=114.3

Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008041           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p  169 (579)
                      ..+.+.+.|..+.+..+++.-+  +....+.++|+|+++++++.+    .++...+..+...+..|...  .+  .++.+
T Consensus       213 y~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vk  286 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVK  286 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhh
Confidence            3355888899988887776532  345677899999998887632    23333333222222222111  01  13456


Q ss_pred             CCCEEEEECCeEEEEECCC-----CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc------cce
Q 008041          170 DGKMLATAAGQLKTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SAS  238 (579)
Q Consensus       170 ~g~~l~~~~~~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~------~~~  238 (579)
                      +|++...+++.|.+.|.++     .+.+..+. -......+.++|||+++++++..+.++.|.|+.+.+..      ...
T Consensus       287 dGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        287 AGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             CCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence            8888777678999999998     34555554 34556889999999999999878999999999886521      011


Q ss_pred             ee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          239 CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      ++ ....-.... ....|+     ++|....+.-.|..|..||+..
T Consensus       366 ~vvaevevGlGP-LHTaFD-----g~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        366 AVVAEPELGLGP-LHTAFD-----GRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEEeeccCCCc-ceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence            11 111111112 234455     7888777778899999999876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.07  E-value=0.00014  Score=75.07  Aligned_cols=290  Identities=12%  Similarity=0.106  Sum_probs=158.0

Q ss_pred             EEccCCCEEEEEeC----CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           12 SFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fspdg~~lasg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +|+|...+||.++.    .|.|.||- ++|++.....                   .....++++|.|.         .-
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~~   72 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------EF   72 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------HH
Confidence            89999999998873    57788873 4565433221                   0123456888886         45


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecCC--C--C
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST--K--G  161 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~--~--~  161 (579)
                      .++.|-.-|.+.+|...+.+.- .....|..+|..+.|+|+|..++++..-|.|.+|.......++.  +-.|.  .  .
T Consensus        73 vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt  151 (1416)
T KOG3617|consen   73 VLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT  151 (1416)
T ss_pred             HHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence            5788888899999998877764 44467999999999999999999999999999998653222222  11121  1  3


Q ss_pred             eeEEEEccCCC-------EEEEEC-CeEE-EEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          162 ISCMAVSSDGK-------MLATAA-GQLK-TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       162 v~~l~~~p~g~-------~l~~~~-~~i~-vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ..|...++++.       .-++|+ +-+- .++.+....-+... |.       -.|+|..++.++ .+|+|+--|-...
T Consensus       152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~-~~GtVyyvdq~g~  222 (1416)
T KOG3617|consen  152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAG-KSGTVYYVDQNGR  222 (1416)
T ss_pred             EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEc-CCceEEEEcCCCc
Confidence            34555566643       222333 2221 22222110011111 11       136777777777 7998887764433


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc-CCceeecccCCeeEEeeeccCCcccccccc
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG-QNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      ..    .+...+.   .+.+++.      +...-+.+...+-++.+|-. .+|..-. ..  ...+      +...-+..
T Consensus       223 ~~----~V~k~dS---~vQmLf~------~~~eai~~i~e~lr~~l~~v~~~G~~ee-~~--~vk~------sgk~Ggrq  280 (1416)
T KOG3617|consen  223 QR----TVHKLDS---EVQMLFM------GYCEAISIIIEFLRDCLIFVLAKGTSEE-RC--AVKV------SGKLGGRQ  280 (1416)
T ss_pred             EE----EEEEccc---hHHHHHh------cccceEEEEeeeceeeEEEecCCCchHH-hh--hhhh------ccccCCcc
Confidence            21    1112111   1223332      33344555555555544432 2221100 00  0000      11110111


Q ss_pred             hhhhhccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceecccceee
Q 008041          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      ..|+.+-..|+.+.                -+++.. ...-+.|++++..+..| ..|...+.+.+|.-
T Consensus       281 GgiA~sEssGvLr~----------------~eKyg~e~ge~~~c~cY~~~~~~l-~agt~~gnv~~w~~  332 (1416)
T KOG3617|consen  281 GGIACSESSGVLRK----------------SEKYGLELGEGILCMCYGEKEIRL-WAGTKEGNVTIWLD  332 (1416)
T ss_pred             CccccccccccccC----------------CcchhhhcCCceEEEEEeccceEE-EecccCCcEEEeee
Confidence            13444443332222                011111 23357888899888888 78877888888864

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.07  E-value=0.0031  Score=66.07  Aligned_cols=151  Identities=20%  Similarity=0.267  Sum_probs=92.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC---
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---   94 (579)
                      ..++.++.|+.|.-.|..+|+.+..+............+.+            +.            .+..+++++.   
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v------------~~g~Vivg~~~~~  176 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LV------------VKGKVITGISGGE  176 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EE------------ECCEEEEeecccc
Confidence            45667778999999999999998876531110000000001            00            0345666653   


Q ss_pred             ---CCeEEEEEccCCeEEEEecCCCC------------------------------CCEE-EEEEccCCCEEEEEeCC--
Q 008041           95 ---GGDVLALAVSAGQLKWRLSDCHP------------------------------GGVS-AISFATHGSCIYSAGAD--  138 (579)
Q Consensus        95 ---~g~i~iwd~~~~~~~~~~~~~h~------------------------------~~V~-~l~~~~~~~~l~s~~~d--  138 (579)
                         +|.|..+|..+|+.+++......                              ..++ .+.+.|+..+++.+..+  
T Consensus       177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~  256 (527)
T TIGR03075       177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS  256 (527)
T ss_pred             cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence               57899999999999877532111                              1122 34666666666665422  


Q ss_pred             ---C-----------cEEEEeCCCCceeeEeecCCC---------CeeEEEEccCCC---EEEEEC--CeEEEEECCCCe
Q 008041          139 ---G-----------MVCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTFNCSDHK  190 (579)
Q Consensus       139 ---~-----------~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~p~g~---~l~~~~--~~i~vwd~~~~~  190 (579)
                         +           .|.-.|+++|+....|+....         ...-+.+..+|+   .++.+.  |.+++.|-++|+
T Consensus       257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence               2           577789999998888775222         122233334676   566666  899999999998


Q ss_pred             ee
Q 008041          191 KM  192 (579)
Q Consensus       191 ~~  192 (579)
                      .+
T Consensus       337 ~i  338 (527)
T TIGR03075       337 LL  338 (527)
T ss_pred             ee
Confidence            76

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=6.3e-05  Score=72.16  Aligned_cols=199  Identities=17%  Similarity=0.174  Sum_probs=136.3

Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ++++.|-+|..++|++. |..++++|+.+-....-++-                   ......+.|.....+.     -.
T Consensus        57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL-------------------~~lPg~a~wv~skGd~-----~s  112 (558)
T KOG0882|consen   57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL-------------------VDLPGFAEWVTSKGDK-----IS  112 (558)
T ss_pred             HhhhccccceeEeeccCcccceeEEEeeccchhhhccc-------------------ccCCCceEEecCCCCe-----ee
Confidence            44477889999999877 99999999987665433321                   1112234555443221     22


Q ss_pred             EEEEEE-CCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeE-----
Q 008041           88 LLVLGT-GGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGK-----  154 (579)
Q Consensus        88 ~l~~~~-~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~------~~~~~~-----  154 (579)
                      .++++. .+|.|.++|-....+ ..-+.+-|..+|..+.+++-+..+.+....|.|..|....      .+....     
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            344444 568899999876653 3334466999999999999999999999999999999762      111111     


Q ss_pred             ----eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------------------------------
Q 008041          155 ----FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------------------------------  196 (579)
Q Consensus       155 ----~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--------------------------------  196 (579)
                          +.-.+....++.|+|+|..+.+-+  ..|++++.++|+.++.+.                                
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele  272 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE  272 (558)
T ss_pred             hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence                112345678999999999998877  799999999987654331                                


Q ss_pred             cCCC-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          197 GHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       197 ~h~~-~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .|.. .-+.+.|...|++|+.++- = -|++.++.++.
T Consensus       273 k~~~~~~~~~~fdes~~flly~t~-~-gikvin~~tn~  308 (558)
T KOG0882|consen  273 KHGSTVGTNAVFDESGNFLLYGTI-L-GIKVINLDTNT  308 (558)
T ss_pred             hhcCcccceeEEcCCCCEEEeecc-e-eEEEEEeecCe
Confidence            1211 2345678888999988762 3 48888888765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.04  E-value=9.8e-07  Score=87.90  Aligned_cols=198  Identities=11%  Similarity=0.131  Sum_probs=127.7

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ++...+..|...++.|..+|.|.+-..+...-. .++.                .++ ...+++++|.+.+        .
T Consensus        61 cva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t----------------p~~-ar~Ct~lAwneLD--------t  115 (783)
T KOG1008|consen   61 CVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT----------------PGY-ARPCTSLAWNELD--------T  115 (783)
T ss_pred             eehhhcCCchhhhhhccccCceEEeecCCcccccceec----------------ccc-ccccccccccccc--------H
Confidence            343334445458889999999988776543221 1111                122 4578999999875        4


Q ss_pred             cEEEEEEC----CCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeec
Q 008041           87 SLLVLGTG----GGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRA  157 (579)
Q Consensus        87 ~~l~~~~~----~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~  157 (579)
                      +.|++|-.    +..+.|||+.++-    ....+..+......+++|..+.+.+.+|.....+.++|++.. .....+  
T Consensus       116 n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--  193 (783)
T KOG1008|consen  116 NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--  193 (783)
T ss_pred             HHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--
Confidence            55666643    3449999998761    112222223455678899988889999999999999998732 222222  


Q ss_pred             CCCCeeEEEEcc-CCCEEEEEC-CeEEEEE-CCCCe-eeEEeecCCC----CEEEEEEecCCC-EEEEEecCCCeEEEEE
Q 008041          158 STKGISCMAVSS-DGKMLATAA-GQLKTFN-CSDHK-KMQKFSGHPG----AVRFMTFSDNGK-YVLSSAVGERYIALWR  228 (579)
Q Consensus       158 ~~~~v~~l~~~p-~g~~l~~~~-~~i~vwd-~~~~~-~~~~~~~h~~----~v~~l~~s~~~~-~l~s~~~~d~~i~vwd  228 (579)
                      ....+..+.++| .+.++++-. |.|.+|| .++-+ .+..+...+.    .+..++|+|... .+++...+.++|+.++
T Consensus       194 nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  194 NTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             hhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            234566788888 788888877 9999999 33322 2222322222    488999998654 4455555668999999


Q ss_pred             cCCC
Q 008041          229 TDGV  232 (579)
Q Consensus       229 ~~~~  232 (579)
                      +...
T Consensus       274 i~~v  277 (783)
T KOG1008|consen  274 ICVV  277 (783)
T ss_pred             cccc
Confidence            8653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.01  E-value=0.0088  Score=58.27  Aligned_cols=224  Identities=11%  Similarity=0.019  Sum_probs=113.3

Q ss_pred             ECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe--EEEEEccCCeEEE
Q 008041           33 DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKW  110 (579)
Q Consensus        33 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~~~~~~~  110 (579)
                      |..||..+..++.........-|..+             +|...        +..+|+.+..+|.  +++.|+.+++..+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~-------------~ft~d--------G~kllF~s~~dg~~nly~lDL~t~~i~Q   74 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQN-------------CFTDD--------GRKLLFASDFDGNRNLYLLDLATGEITQ   74 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS---------------B-TT--------S-EEEEEE-TTSS-EEEEEETTT-EEEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCC-------------CcCCC--------CCEEEEEeccCCCcceEEEEcccCEEEE
Confidence            67788888777654433332333222             22221        1355665665665  8888999998874


Q ss_pred             EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE--ccCCCEEEEEC----------
Q 008041          111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA----------  178 (579)
Q Consensus       111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~p~g~~l~~~~----------  178 (579)
                      -. .+-.....+..++|+++.++-......|+-.|+.+.+....+......+-...|  +.|+..++..-          
T Consensus        75 LT-dg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~  153 (386)
T PF14583_consen   75 LT-DGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT  153 (386)
T ss_dssp             ----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred             Cc-cCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence            44 322222335667888888776666778999999998876666666665554555  44666665431          


Q ss_pred             --------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---CCC-eEEEEEcCCCccccceee
Q 008041          179 --------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---GER-YIALWRTDGVKKQSASCV  240 (579)
Q Consensus       179 --------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---~d~-~i~vwd~~~~~~~~~~~~  240 (579)
                                    ..|.-.|+.+|+....+. -...+..+.|+|....++.-|.   +|. .-+||-++...... ..+
T Consensus       154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v  231 (386)
T PF14583_consen  154 KWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKV  231 (386)
T ss_dssp             SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES
T ss_pred             ccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eee
Confidence                          246667888887544444 4567888999997776666542   222 13677666543221 122


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEc-----CCeEEEEEcCCcee
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE  286 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~  286 (579)
                      ... .......--+|.     |||..|.--+.     +..|.-+|..+++.
T Consensus       232 ~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  232 HRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             S----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             ecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            222 335555666776     89987765443     33566678887754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.00  E-value=0.00052  Score=73.29  Aligned_cols=139  Identities=15%  Similarity=0.126  Sum_probs=95.4

Q ss_pred             CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008041           25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS  104 (579)
Q Consensus        25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~  104 (579)
                      ....|.-.|+..|+.+.++..+.... ...|.+.-.-+++                    .+...++|-.+..+..||++
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aql--------------------t~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQL--------------------TNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcc-eeEeccccccccc--------------------CCCceEEEECCCceEEeccC
Confidence            45678888999999999998655321 1122221000000                    14457899999999999998


Q ss_pred             CCe--EEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCCEEEEEC-
Q 008041          105 AGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA-  178 (579)
Q Consensus       105 ~~~--~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~~l~~~~-  178 (579)
                      -..  ++..-.  .......+|++-..+| +|+.|+.+|.||+|| +.|+.-+ .+.+-..+|..|+.+.||+++++.+ 
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            632  332111  1133457788877776 799999999999999 4454333 4667778999999999999988877 


Q ss_pred             CeEEEEEC
Q 008041          179 GQLKTFNC  186 (579)
Q Consensus       179 ~~i~vwd~  186 (579)
                      ..+.+++.
T Consensus       639 tyLlLi~t  646 (794)
T PF08553_consen  639 TYLLLIDT  646 (794)
T ss_pred             ceEEEEEE
Confidence            77788775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.99  E-value=0.0047  Score=64.46  Aligned_cols=193  Identities=12%  Similarity=0.181  Sum_probs=115.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccc--cccccccccccccccccceEEeeecccccccccCC-cEEEEEE
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTET--TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGT   93 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~~~   93 (579)
                      +..+..++.++.|.-.|..+|+.+..+........  .......           ...            .+ ..+++++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g-----------~~~------------~~~~~V~v~~  117 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG-----------VAY------------WDPRKVFFGT  117 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCC-----------cEE------------ccCCeEEEec
Confidence            34566677789999999999998877653221000  0000000           000            03 6788999


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCC----CEE-EEEEccCCCEEEEEe---------CCCcEEEEeCCCCceeeEeecCC
Q 008041           94 GGGDVLALAVSAGQLKWRLSDCHPG----GVS-AISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~----~V~-~l~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                      .+|.|+-+|..+|+.+++....-..    .+. +..+.  +..++.++         .++.++.+|..+|+.+..+....
T Consensus       118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~  195 (488)
T cd00216         118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE  195 (488)
T ss_pred             CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence            9999999999999999887432110    011 11221  23455553         36889999999999888765421


Q ss_pred             CC--------------------e-eEEEEccCCCEEEEEC--C------------------eEEEEECCCCeeeEEeec-
Q 008041          160 KG--------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSG-  197 (579)
Q Consensus       160 ~~--------------------v-~~l~~~p~g~~l~~~~--~------------------~i~vwd~~~~~~~~~~~~-  197 (579)
                      ..                    + .+.++++.+..++.+.  +                  .|.-+|..+|+.+-+++. 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~  275 (488)
T cd00216         196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT  275 (488)
T ss_pred             CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence            10                    0 1344555555666654  3                  699999999998877642 


Q ss_pred             -CCC----CEEEEEEe----cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          198 -HPG----AVRFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       198 -h~~----~v~~l~~s----~~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                       |..    ......+.    -++.   .++.++ .+|.+...|..+++..
T Consensus       276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~  324 (488)
T cd00216         276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI  324 (488)
T ss_pred             CCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence             211    00111111    1333   455554 7999999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.98  E-value=0.0082  Score=57.36  Aligned_cols=194  Identities=13%  Similarity=0.183  Sum_probs=123.2

Q ss_pred             EEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|.||+++.....  ...|.|-|+..++.+.++..+.                      |..-.|..        +.-
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------------------C~~iyP~~--------~~~  149 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------------------CWLIYPSG--------NRG  149 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------------------EEEEEEEE--------TTE
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------------------EEEEEecC--------CCc
Confidence            388999998887653  5679999999999988775221                      22223332        345


Q ss_pred             EEEEECCCeEEEEEcc-CCeEEEE---ecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEeec----
Q 008041           89 LVLGTGGGDVLALAVS-AGQLKWR---LSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFRA----  157 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~-~~~~~~~---~~~~h~~~V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~----  157 (579)
                      +.+-+.||.+.-..+. .|+...+   ++..-.+++. .-.+...+..++..+.+|.|+--|+......  ..+..    
T Consensus       150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~  229 (342)
T PF06433_consen  150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA  229 (342)
T ss_dssp             EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred             eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc
Confidence            7888999998888887 4544321   2222223332 3344555556666789999999988654321  11211    


Q ss_pred             ------CCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEe
Q 008041          158 ------STKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSA  218 (579)
Q Consensus       158 ------~~~~v~~l~~~p~g~~l~~~~------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~  218 (579)
                            -.+.-.-+++++..+.|.+-.            ..|.+||+.+++.+..+.- ..++.+|..+.+.+ +|++.+
T Consensus       230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~  308 (342)
T PF06433_consen  230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS  308 (342)
T ss_dssp             HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE
T ss_pred             ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc
Confidence                  012345578887665555431            2799999999999998873 34688999998876 555554


Q ss_pred             cCCCeEEEEEcCCCccc
Q 008041          219 VGERYIALWRTDGVKKQ  235 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~  235 (579)
                      ..++.+.+||..+++..
T Consensus       309 ~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  309 AGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTTTEEEEEETTT--EE
T ss_pred             CCCCeEEEEeCcCCcEE
Confidence            46899999999998754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=0.00013  Score=72.98  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC
Q 008041          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH  189 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~  189 (579)
                      ...+.|.+++++|+...++.|+.||+|.+||...+...  +....-.++.++|+|+|.++++|+  |.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46778999999999999999999999999998666332  223345678999999999999999  99999998654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=0.015  Score=58.58  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=128.8

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      ..+....++.|.+.|..+.........+.  ....++++|+++.++.+..   ++++.+.|-.+++...+......+ ..
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~  164 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG  164 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence            44444556889999988877765554443  5778999999988877765   689999999888888875543334 89


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeE-E----eecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCcc
Q 008041          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-K----FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~-~----~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~  234 (579)
                      ++++|+|+.++.+.   +.|.+.|..+..... .    ...+ ..-..+.++|+|.++......+  +.+...|..++..
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            99999999777665   899999977665543 1    2212 2235689999999776665333  5788888877653


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeecc
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN  289 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~  289 (579)
                      ..  ..... ... ........     |+|.++.+... .+.+.+-|..+......
T Consensus       244 ~~--~~~~~-~~~-~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         244 TA--TDLPV-GSG-APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EE--ecccc-ccC-CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            21  00111 111 22334444     99999888854 58899988877665543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.90  E-value=0.025  Score=54.14  Aligned_cols=245  Identities=15%  Similarity=0.167  Sum_probs=127.8

Q ss_pred             EEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCcc-ccccccccccccccccccccceEEeeeccccc
Q 008041           12 SFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        12 ~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..||||+.+++++          ..-.|.+||..+-....++.-+.. ......+..            .... +.    
T Consensus        42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~------------~~~l-s~----  104 (342)
T PF06433_consen   42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKN------------MFAL-SA----  104 (342)
T ss_dssp             EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GG------------GEEE--T----
T ss_pred             eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccccc------------ceEE-cc----
Confidence            6899999888654          234699999999988887653321 000000000            0000 00    


Q ss_pred             ccccCCcEEEEEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeE---
Q 008041           81 KRKLGSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGK---  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~---  154 (579)
                          ++.++++....  ..|.|-|+..++.+..+..   ..+..+--+++ +.|.+-|.||.+.-..+. .|+..++   
T Consensus       105 ----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  105 ----DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             ----TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             ----CCcEEEEEccCCCCeEEEEECCCCceeeeecC---CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence                14444444333  3477777777777665522   23333332332 458888899999998887 5665433   


Q ss_pred             -eecCCCC-eeEEEEccCC-CEEEEEC-CeEEEEECCCCee--eEEeec----------CCCCEEEEEEecCCCEEEEEe
Q 008041          155 -FRASTKG-ISCMAVSSDG-KMLATAA-GQLKTFNCSDHKK--MQKFSG----------HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       155 -~~~~~~~-v~~l~~~p~g-~~l~~~~-~~i~vwd~~~~~~--~~~~~~----------h~~~v~~l~~s~~~~~l~s~~  218 (579)
                       |.....+ +..-++...+ .++.... |.|+--|+.....  ...+.-          ..+.-.-+++++....|++.-
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence             2222222 2233444444 4444444 8999888876542  222210          123345578887665555421


Q ss_pred             -------cCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeec
Q 008041          219 -------VGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR  288 (579)
Q Consensus       219 -------~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~  288 (579)
                             ..|.  .|.++|+.+++..     ..+..... +..+..+.    .+..+|++.+ .++.+.+||..+|+.++
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv-----~Ri~l~~~-~~Si~Vsq----d~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRV-----ARIPLEHP-IDSIAVSQ----DDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEE-----EEEEEEEE-ESEEEEES----SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEE-----EEEeCCCc-cceEEEcc----CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence                   1122  4777787777643     33322221 22334441    2334665554 58999999999999887


Q ss_pred             ccC
Q 008041          289 NTK  291 (579)
Q Consensus       289 ~~~  291 (579)
                      ..+
T Consensus       327 ~~~  329 (342)
T PF06433_consen  327 SIE  329 (342)
T ss_dssp             EE-
T ss_pred             ehh
Confidence            654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.89  E-value=0.036  Score=56.82  Aligned_cols=241  Identities=12%  Similarity=0.102  Sum_probs=125.3

Q ss_pred             EEEEccCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           10 LTSFSPALDYFAIC-SGDA----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fspdg~~lasg-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      ..++||||+++|.+ +..|    .|+|+|+.+|+.+...-                   .......+.|.+.+       
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~-------  181 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDG-------  181 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTS-------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCC-------
Confidence            35899999999865 3333    59999999997654210                   01122236776643       


Q ss_pred             CCcEEEEEECC----------CeEEEEEccCCeEE-EEecCCCCC-C-EEEEEEccCCCEEEEEe-CC---CcEEEEeCC
Q 008041           85 GSSLLVLGTGG----------GDVLALAVSAGQLK-WRLSDCHPG-G-VSAISFATHGSCIYSAG-AD---GMVCEIDPL  147 (579)
Q Consensus        85 ~~~~l~~~~~~----------g~i~iwd~~~~~~~-~~~~~~h~~-~-V~~l~~~~~~~~l~s~~-~d---~~v~iwd~~  147 (579)
                       ..++++....          ..|+.|.+.++... ..++.+... . ...+..++|+++++..+ ..   ..+++.|+.
T Consensus       182 -~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  182 -KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             -SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             -CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence             2333443333          22888888766432 112222222 2 67888999999966543 22   347888887


Q ss_pred             CC----ceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEE
Q 008041          148 TG----SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       148 ~~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      .+    .....+......+....-+..+.+++...     +.|...++.+...   ...+..|...+.--.+...+.+|+
T Consensus       261 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  261 DGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             CTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             ccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence            64    23333333344443333333555555543     5777788887652   335555665443344444556666


Q ss_pred             EEecCCC--eEEEEEcC-CCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEE-Ec--CCeEEEEEcCCceee
Q 008041          216 SSAVGER--YIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAI-SE--TGVCYIWYGQNIEEL  287 (579)
Q Consensus       216 s~~~~d~--~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~--dg~i~iwd~~~~~~~  287 (579)
                      ..-..++  .|.++++. .....    ...+.... .+......     +++. +.+.. |.  -++++.||+.+++..
T Consensus       341 l~~~~~~~~~l~v~~~~~~~~~~----~~~~p~~g-~v~~~~~~-----~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  341 LSYRENGSSRLRVYDLDDGKESR----EIPLPEAG-SVSGVSGD-----FDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEETTEEEEEEEETT-TEEEE----EEESSSSS-EEEEEES------TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEEEECCccEEEEEECCCCcEEe----eecCCcce-EEeccCCC-----CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            6554454  58888988 33211    11222222 12222222     3333 33333 22  468888998888653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.89  E-value=0.014  Score=55.93  Aligned_cols=232  Identities=11%  Similarity=0.091  Sum_probs=124.4

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           14 SPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        14 spdg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      ...++.|+.|..+| |.+++... ........ ..                   .++.+.-.+.         -+ +++.
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~~-------------------~I~ql~vl~~---------~~-~llv   52 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-LS-------------------SITQLSVLPE---------LN-LLLV   52 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEee-cc-------------------eEEEEEEecc---------cC-EEEE
Confidence            34678999999898 89998832 22222211 00                   1222222221         12 2333


Q ss_pred             ECCCeEEEEEccCCeEEEEe-------------cCCCCCCEEEEE--EccCCCEEEEEeCCCcEEEEeCCCC-----cee
Q 008041           93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL  152 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~-------------~~~h~~~V~~l~--~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~  152 (579)
                      -.|+.++++++..-......             .......+..++  -.+.+...+.+....+|.+|.....     +..
T Consensus        53 Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   53 LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             EcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence            34599999998764432210             112233455555  1234444444555668888876543     344


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEec
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      +.+.- ...+.+++|.  ++.++.|. +...+.|+.++.....+...            ..++..+.. +++.+|++   
T Consensus       133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~---  205 (275)
T PF00780_consen  133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC---  205 (275)
T ss_pred             EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE---
Confidence            55553 4678899998  55677775 88999999977554332111            123333333 44566654   


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      .|..-...|.......  .  ..+.-...........        .+|++.+. +.|.||++.+++.++.+......
T Consensus       206 ~~~~g~fv~~~G~~~r--~--~~i~W~~~p~~~~~~~--------pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~  269 (275)
T PF00780_consen  206 YDNIGVFVNKNGEPSR--K--STIQWSSAPQSVAYSS--------PYLIAFSS-NSIEVRSLETGELVQTIPLPNIR  269 (275)
T ss_pred             ecceEEEEcCCCCcCc--c--cEEEcCCchhEEEEEC--------CEEEEECC-CEEEEEECcCCcEEEEEECCCEE
Confidence            2444444444332211  1  1222333333333332        46666655 55999999999887766544443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.0001  Score=74.94  Aligned_cols=152  Identities=16%  Similarity=0.225  Sum_probs=99.2

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      -+++..++|++.|+.-|.+.+|+-..|.....-.+                +  ....++..-.+.+        ..+++
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~----------------~--~~~~~~~~~vs~~--------e~lvA   92 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE----------------G--ATGITCVRSVSSV--------EYLVA   92 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhccccc----------------C--ccceEEEEEecch--------hHhhh
Confidence            37788899999999999999999776654321110                0  1111222222221        56788


Q ss_pred             EEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceeeEeecCCCC
Q 008041           91 LGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRASTKG  161 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~  161 (579)
                      .|+..|.|.++-++.+..     +....+.|...|++++|++|+..+++|...|+|..-.+...    ...+.+....+.
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence            999999999998876432     22223447889999999999999999999999998887662    122233334567


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCC
Q 008041          162 ISCMAVSSDGKMLATAAGQLKTFNCSDH  189 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~  189 (579)
                      |-.+... ++.+|++..-...+++++.+
T Consensus       173 IVQlD~~-q~~LLVStl~r~~Lc~tE~e  199 (726)
T KOG3621|consen  173 IVQLDYL-QSYLLVSTLTRCILCQTEAE  199 (726)
T ss_pred             eEEeecc-cceehHhhhhhhheeecchh
Confidence            7667665 34444444455556666544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.0011  Score=66.98  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGK  172 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~  172 (579)
                      ..++++++.+++......  ..+.-....|+|||+.++.+ ..||.  |+++|+..+.. ..+....+.-..-.|+|||+
T Consensus       218 ~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~  294 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGS  294 (425)
T ss_pred             ceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCC
Confidence            469999999887643332  23344566899999986554 45664  66678776663 33554444444778999999


Q ss_pred             EEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCc
Q 008041          173 MLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVK  233 (579)
Q Consensus       173 ~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~  233 (579)
                      .++..+   |  .|++++.+.+.. ..+....+.-..-.|+|||++++..+..+|.  |.+.++.++.
T Consensus       295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            999877   3  688888876654 3333233333377899999999888744454  5555554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0021  Score=67.06  Aligned_cols=193  Identities=16%  Similarity=0.218  Sum_probs=121.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC------cee-
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLTG------SLL-  152 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~------~~~-  152 (579)
                      +..++.|+.+|.|.+++-.-.. +..+ +.+... |..+....+..++++.+.|+     .+++||+..-      .++ 
T Consensus        35 ~~~vvigt~~G~V~~Ln~s~~~-~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNSSFQL-IRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CceEEEeeccccEEEeccccee-eehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            6789999999999988754222 1222 445555 45444444446778777665     4899998632      233 


Q ss_pred             --eEee--c--CCCCeeEEEEccCCCEEEEEC--CeEEEEECC--C--CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041          153 --GKFR--A--STKGISCMAVSSDGKMLATAA--GQLKTFNCS--D--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       153 --~~~~--~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~--~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                        +.+.  .  ...++.+++++.+-+.+|+|-  |.|..+.-+  .  +....-......+|+.+.+..+++.++... .
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T  191 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T  191 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence              1122  1  245789999999988888887  888887432  1  111112223457999999998888622222 2


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      -..|.+|.+.... +   ....+.+++..+.|..++     +....+++++ +..+.+|+.+.......+.
T Consensus       192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            4679999998543 2   334567888888888887     3333244443 3479999887655544443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.0013  Score=66.31  Aligned_cols=157  Identities=13%  Similarity=0.067  Sum_probs=100.5

Q ss_pred             CCCCEEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---C--eEEEEEC
Q 008041          116 HPGGVSAISFATHGSCIYSAG---AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---G--QLKTFNC  186 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~---~d-~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~--~i~vwd~  186 (579)
                      -...+..-+|+|+++.++..+   .. ..++++|+.+++...... ..+.-...+|+|||+.++.+.   |  .|+++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            345677788999998754432   22 469999999886555433 223334578999999998876   3  7899999


Q ss_pred             CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC
Q 008041          187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       187 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .++.. ..+..-.+.-..-.|+|||++++..++..|.  |.+++.+.....    ..+.......  .-.++     |||
T Consensus       270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~----riT~~~~~~~--~p~~S-----pdG  337 (425)
T COG0823         270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT----RLTFSGGGNS--NPVWS-----PDG  337 (425)
T ss_pred             CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee----EeeccCCCCc--CccCC-----CCC
Confidence            88763 3354334444467899999999998866665  444555554422    1122122211  34444     999


Q ss_pred             cEEEEEEc-CCe--EEEEEcCCce
Q 008041          265 LYVLAISE-TGV--CYIWYGQNIE  285 (579)
Q Consensus       265 ~~l~~~~~-dg~--i~iwd~~~~~  285 (579)
                      ++|+..+. +|.  |.++|..++.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCC
Confidence            99988875 354  5556655544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.003  Score=60.74  Aligned_cols=195  Identities=18%  Similarity=0.173  Sum_probs=116.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~  160 (579)
                      +.++.+--..+.|.-|+..+++...-.   +.+.+.++..-..+..|+++. . -+.+++..++..+..+...     ..
T Consensus        37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~  111 (307)
T COG3386          37 GALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLN  111 (307)
T ss_pred             CEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcC
Confidence            445666667788999999877653222   334445554444454555552 3 3677777666553332221     13


Q ss_pred             CeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      ..+.+.+.|+|.+.++..             |.++.+|. .+..++.+..+-..-+.|+||||++.|+.+-+..+.|.-|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            567888999998776532             34555554 4556666666666678899999999888775556788888


Q ss_pred             EcCC--CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-eEEEEEcCCceeecccCC
Q 008041          228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~  292 (579)
                      ++..  +.....................+..     .+|.+-+++-.+| .|..|+.+ ++.+..+.-
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            8763  1111111111222223333444444     6777665544444 89999988 777765543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.86  E-value=0.0026  Score=68.99  Aligned_cols=188  Identities=13%  Similarity=0.217  Sum_probs=120.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC----CC-------------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----LT-------------  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~----~~-------------  148 (579)
                      ...+++++..|.|.+-|+.+....  +...-..+|.+++|+||++.++..+.++++.+.+-    -.             
T Consensus        80 ~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk  157 (1265)
T KOG1920|consen   80 TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK  157 (1265)
T ss_pred             cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence            667999999999999999887653  22334578999999999999988888888776432    11             


Q ss_pred             ------CceeeEeecCC---------------------CCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE
Q 008041          149 ------GSLLGKFRAST---------------------KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       149 ------~~~~~~~~~~~---------------------~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~  194 (579)
                            |+....|++..                     +.=++|.|--||+++++..       ..|++||-+ |..-.+
T Consensus       158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~  236 (1265)
T KOG1920|consen  158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST  236 (1265)
T ss_pred             cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence                  11111222111                     1124589999999999853       589999976 543222


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE--
Q 008041          195 FSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI--  270 (579)
Q Consensus       195 ~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--  270 (579)
                      -....+.-.+++|-|.|..+++...  .|+.|.++.-..-....  .....+.....+.-+.|+     .++..|++.  
T Consensus       237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wn-----s~sdiLAv~~~  309 (1265)
T KOG1920|consen  237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWN-----SNSDILAVVTS  309 (1265)
T ss_pred             cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccchheeeec-----CCCCceeeeec
Confidence            2223344567999999998877532  34568888765543221  222222333325666776     788888773  


Q ss_pred             -EcCCeEEEEEcCC
Q 008041          271 -SETGVCYIWYGQN  283 (579)
Q Consensus       271 -~~dg~i~iwd~~~  283 (579)
                       .....|++|-..+
T Consensus       310 ~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  310 NLENSLVQLWTTGN  323 (1265)
T ss_pred             ccccceEEEEEecC
Confidence             3344599997554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.86  E-value=0.01  Score=58.36  Aligned_cols=140  Identities=19%  Similarity=0.211  Sum_probs=87.2

Q ss_pred             CcEEEEEEC---------C-CeEEEEEccCC-----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 008041           86 SSLLVLGTG---------G-GDVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~---------~-g~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~  150 (579)
                      ..++++|+.         . |.|.++++...     ++.........++|++++-- +| +++.+ ..+.|++|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcc
Confidence            577888885         2 88999999984     33222223467899999866 44 44444 45889999998777


Q ss_pred             -eeeEe-ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041          151 -LLGKF-RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       151 -~~~~~-~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~  223 (579)
                       ....- ......+.++...  ++++++|+  ..+.++..+. ++.+..+.  .....++++.|-++++.++.+ +.+|.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~-D~~gn  195 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG-DKDGN  195 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-ETTSE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-cCCCe
Confidence             44332 2122355555554  66888888  6666664332 33333332  234568888898777766655 47999


Q ss_pred             EEEEEcCC
Q 008041          224 IALWRTDG  231 (579)
Q Consensus       224 i~vwd~~~  231 (579)
                      +.++....
T Consensus       196 l~~l~~~~  203 (321)
T PF03178_consen  196 LFVLRYNP  203 (321)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEEECC
Confidence            99998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.82  E-value=0.00039  Score=69.76  Aligned_cols=81  Identities=21%  Similarity=0.352  Sum_probs=63.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ++|  +|++++|+.+.|+.|+.||.|.+||...+..... +                   .....+.++|+|.       
T Consensus       260 s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~-------  310 (545)
T PF11768_consen  260 SQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD-------  310 (545)
T ss_pred             Ccc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC-------
Confidence            566  8889999999999999999999999877643321 1                   1234567888875       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC  115 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~  115 (579)
                        +.++++|+..|.+.+||+.-+....++..+
T Consensus       311 --gai~~V~s~qGelQ~FD~ALspi~~qLlsE  340 (545)
T PF11768_consen  311 --GAIFVVGSEQGELQCFDMALSPIKMQLLSE  340 (545)
T ss_pred             --CcEEEEEcCCceEEEEEeecCccceeeccc
Confidence              788999999999999999877665555433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00011  Score=69.73  Aligned_cols=151  Identities=12%  Similarity=0.153  Sum_probs=99.7

Q ss_pred             EEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041           98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      +++.+..+-+.. ++..+|...|.+++|+|..+ .+..++.+..|++.|+++...+..+..+ ..+.+++|.-|...++-
T Consensus       175 v~~l~~~~fkss-q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSS-QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchh-hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence            555555544443 35577888999999999777 5788999999999999999999998877 78999999987766655


Q ss_pred             EC---CeEEEEECCCCee-eEEeec--CCCCEEEEEEe------cCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          177 AA---GQLKTFNCSDHKK-MQKFSG--HPGAVRFMTFS------DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       177 ~~---~~i~vwd~~~~~~-~~~~~~--h~~~v~~l~~s------~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      ++   |.|++||++..+- +..+.+  ...+|..++.-      +.|.+++.+. .  .+..|........ ..++..++
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t--~l~f~ei~~s~~~-~p~vlele  328 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-T--VLQFYEIVFSAEC-LPCVLELE  328 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-h--hhhhhhhhccccC-CCcccccC
Confidence            55   8999999987542 233322  23445444332      3344444332 2  3566776544322 23455555


Q ss_pred             cCceeEEeEE
Q 008041          245 HPAVFMDCRC  254 (579)
Q Consensus       245 ~~~~~~~~~~  254 (579)
                      .++..+++..
T Consensus       329 ~pG~cismqy  338 (463)
T KOG1645|consen  329 PPGICISMQY  338 (463)
T ss_pred             CCcceeeeee
Confidence            5555555443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.78  E-value=0.009  Score=58.21  Aligned_cols=193  Identities=11%  Similarity=0.113  Sum_probs=90.1

Q ss_pred             EEccCCCEEEEEeC-CC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        12 ~fspdg~~lasg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +|.+||+.|+.++. ||  .+.+.|+.+++..+--.+..........+++                           .+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~   94 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA   94 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence            68899987776664 54  5666799998876644332211111122221                           344


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEe----------------------CCCcEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAG----------------------ADGMVCEI  144 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~----------------------~d~~v~iw  144 (579)
                      ++..-.+..+.-.|+.+.+... +......-+-...|  +.|+..++-.-                      ..+.|.-.
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~-vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERV-VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEE-EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEE-EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence            5555556678888888876532 22223333433444  33555443221                      12346667


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCC-EEEEEC-C---e--EEEEECCC-CeeeEEeecCC--CCEEEEEEecCCCEE
Q 008041          145 DPLTGSLLGKFRASTKGISCMAVSSDGK-MLATAA-G---Q--LKTFNCSD-HKKMQKFSGHP--GAVRFMTFSDNGKYV  214 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~-~---~--i~vwd~~~-~~~~~~~~~h~--~~v~~l~~s~~~~~l  214 (579)
                      |+.+|+....+. ....+..+.|+|... .|+.|. |   .  -++|-+++ +...+.+..|.  ..+..=-|.|||..+
T Consensus       174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI  252 (386)
T ss_dssp             ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred             ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence            888887655555 456788999999554 444444 2   2  25665543 33344443333  223445789999876


Q ss_pred             EEEec----CCCeEEEEEcCCCc
Q 008041          215 LSSAV----GERYIALWRTDGVK  233 (579)
Q Consensus       215 ~s~~~----~d~~i~vwd~~~~~  233 (579)
                      ..-+.    .+..|.-+|+.+++
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--
T ss_pred             EEEeecCCCCceEEEeeCCCCCC
Confidence            55332    24467777777765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.77  E-value=0.0022  Score=68.61  Aligned_cols=141  Identities=17%  Similarity=0.308  Sum_probs=97.6

Q ss_pred             CcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCc--eeeE-e-
Q 008041           86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-F-  155 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~d~~v~iwd~~~~~--~~~~-~-  155 (579)
                      ..+|+.-- ....++-.|+.+|+.+.........+|..++-..     +....+.|-.+..+..||.+-..  ++.. . 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            45555543 4466999999999998777543444466654321     13345677788999999988532  3321 1 


Q ss_pred             -ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          156 -RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       156 -~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                       ......++|++-+.+|.+.+... |.|++||- .|+. ...+++-..||.+|..+.||+++++++  +..+.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence             12344788999888885544444 99999994 4433 334567789999999999999999886  678888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.71  E-value=0.0095  Score=59.65  Aligned_cols=216  Identities=15%  Similarity=0.207  Sum_probs=113.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--Eecc----------C---ccccccccc--ccccccccc-------
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFAD----------I---ASTETTSLY--GNRLEREHL-------   64 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~----------~---~~~~~~~~~--~~~~~~~~~-------   64 (579)
                      ..+.|+++..-||.|...|.|.||.+...+...  ....          +   ...+..+.-  .+.+..|..       
T Consensus         5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~   84 (395)
T PF08596_consen    5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA   84 (395)
T ss_dssp             EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred             EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence            456999999999999999999999876543321  0000          0   111111100  011011100       


Q ss_pred             -ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cC------CCCCCEEEEEEcc-----CC--
Q 008041           65 -SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SD------CHPGGVSAISFAT-----HG--  129 (579)
Q Consensus        65 -~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~------~h~~~V~~l~~~~-----~~--  129 (579)
                       ...+++++-          .+-.++++|..+|.+.|.|++....+..- ..      .....|+++.|.-     |+  
T Consensus        85 ~~g~vtal~~----------S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   85 KQGPVTALKN----------SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             -S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             cCCcEeEEec----------CCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence             112222222          23788999999999999999888876542 11      2345688888863     33  


Q ss_pred             -CEEEEEeCCCcEEEEeCC--C-Cce----eeEeecCCCCeeEEE-EccC---------------------CCEEEEEC-
Q 008041          130 -SCIYSAGADGMVCEIDPL--T-GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA-  178 (579)
Q Consensus       130 -~~l~s~~~d~~v~iwd~~--~-~~~----~~~~~~~~~~v~~l~-~~p~---------------------g~~l~~~~-  178 (579)
                       -.+++|...|.+.+|.+.  . +..    ......+.++|..|. ++.+                     ..++++++ 
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             358889999999999764  1 211    111223455555554 3211                     11455555 


Q ss_pred             CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----cCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       179 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-----~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ..++++..-+.+...+.....-....+.+-     ..+..|++-. .+|.+++|.+..-+..
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence            899999998887765554332233344553     2455566655 7999999999987644

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.69  E-value=0.0062  Score=59.97  Aligned_cols=176  Identities=10%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEE---EccC----CCEEEEEeC----------CCcEEEEeCCCC----ceeeE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAIS---FATH----GSCIYSAGA----------DGMVCEIDPLTG----SLLGK  154 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~---~~~~----~~~l~s~~~----------d~~v~iwd~~~~----~~~~~  154 (579)
                      +.|++.|..+.+.+..+.-.....+++++   |..+    ..+++.|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888877766544322333455443   4332    456776642          288999999874    12222


Q ss_pred             e--ecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCe-eeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          155 F--RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       155 ~--~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~-~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      +  ....++|++++-- +|.++++.++.|++|++...+ ....-. .....+.++...  +.+++.+. ..+.+.++..+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEEEEEEE
Confidence            1  2246789999877 566666666999999998877 433222 223356666655  55787775 45667777554


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ..... ...+.....+.....+...      +++..+++++.+|.+.++..+
T Consensus       158 ~~~~~-l~~va~d~~~~~v~~~~~l------~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  158 EENNK-LILVARDYQPRWVTAAEFL------VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTTE--EEEEEEESS-BEEEEEEEE-------SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCCE-EEEEEecCCCccEEEEEEe------cCCcEEEEEcCCCeEEEEEEC
Confidence            42211 1122222223333333333      455689999999999999764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.022  Score=57.36  Aligned_cols=192  Identities=13%  Similarity=0.152  Sum_probs=129.6

Q ss_pred             EEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           11 TSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fspdg~~-lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +++++++.. +++...++.|.+.|..+.+......... ..                  ..+.+.+.         +..+
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P------------------~~~~~~~~---------~~~v  130 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GP------------------VGLAVDPD---------GKYV  130 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CC------------------ceEEECCC---------CCEE
Confidence            378888874 4445456899999977777665543111 11                  12333332         4445


Q ss_pred             EEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-E----eecCCC
Q 008041           90 VLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K----FRASTK  160 (579)
Q Consensus        90 ~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~-~----~~~~~~  160 (579)
                      .++..   ++.+.+.|..+++.......+. .+ ..+++.|+|+.++.+. .++.|.+.|.......+ .    .. -..
T Consensus       131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~  207 (381)
T COG3391         131 YVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGT  207 (381)
T ss_pred             EEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCC
Confidence            55555   5779999999999887754433 34 8999999999776665 78999999976555442 1    11 123


Q ss_pred             CeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          161 GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ....+.++|+|+.+.+..     +.+...|..++..... ...-......+.++|+|+++.+.-...+.+.+.|..+..
T Consensus       208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            456789999999776665     3888999988877655 221111456789999999888875556788888877765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00032  Score=72.60  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=83.7

Q ss_pred             EEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE
Q 008041          121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~  194 (579)
                      +-..|+|...+|+.++    ..|.|.||- .+|++-+... ..-.+++++|+|..-.++.|-  |.+.+|...+.+....
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            3457999988888775    467888885 5676544332 223467899999877777776  8999999888776666


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      ...|+.+|..+.||++|..++++- .-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence            678999999999999999999875 67899999876

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.65  E-value=1.2e-05  Score=66.96  Aligned_cols=68  Identities=22%  Similarity=0.294  Sum_probs=60.5

Q ss_pred             hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHh-cccccCCCChhHHHHHHHHHHH
Q 008041          492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH-GHHLLSQESLTPMLSSLYKVRK  560 (579)
Q Consensus       492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h-~~~l~~~~~l~~~l~~l~~~~~  560 (579)
                      ..|+.+|..|+..+..+||+|+. .|+++++.+...+..+.+||+.| ...|...|++...|.+|----+
T Consensus        49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYte  117 (141)
T PF08625_consen   49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTE  117 (141)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHH
Confidence            68999999999999999999998 89999999999999999999955 5567899999988888865544

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.65  E-value=1.3e-05  Score=80.09  Aligned_cols=197  Identities=12%  Similarity=0.152  Sum_probs=124.7

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEcc-CCCEEEEEe----CCCc
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM  140 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~~----~d~~  140 (579)
                      .+.|++|+....       ..++++|..+|.|.+-..+...-- +.+..+|..++++++|++ |.+.|+.|-    .|..
T Consensus        58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            455666665432       467899999999999888754432 456678889999999998 455666653    4567


Q ss_pred             EEEEeCCCC--ceeeE--eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEec-CC
Q 008041          141 VCEIDPLTG--SLLGK--FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD-NG  211 (579)
Q Consensus       141 v~iwd~~~~--~~~~~--~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~  211 (579)
                      +.|||+.++  .+...  |.+ ......+++|..+.+++.+|.  ..+.++|++.. .....+  .+..+..+.+.| .+
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP  208 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence            999999876  22222  332 233667899998888888887  68999999843 222222  234566777888 67


Q ss_pred             CEEEEEecCCCeEEEEEc-CCCccccceeeeeeecCce----eEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcC
Q 008041          212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHPAV----FMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQ  282 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~  282 (579)
                      .|+++.  .|+.|-+||. +.-+..    ...+.+...    .+..+.|.+.   ..|. +++. -..++|+.||+.
T Consensus       209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycPt---rtgl-la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCPT---RTGL-LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEeccC---Ccch-hhhhccCcceEEEeccc
Confidence            787664  4999999994 332211    111112211    1333444411   2333 4444 446799999864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.00079  Score=68.70  Aligned_cols=143  Identities=13%  Similarity=0.150  Sum_probs=99.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeE--e-ecCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK--F-RAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~--~-~~~~  159 (579)
                      ..++++|+..|.+++|+-..++.......+..+.+..+..+++..+++.|+..|.|.++-+..+.+   ...  + +.|+
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~  124 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK  124 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence            788999999999999999988875444344555677778899988899999999999998765422   111  1 1256


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ..|+|++|++++..+.+|+  |.|.+-.+.+..    ....+..-.+.|-.+.... +..|++.. .  .-.+++.+..
T Consensus       125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl-~--r~~Lc~tE~e  199 (726)
T KOG3621|consen  125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTL-T--RCILCQTEAE  199 (726)
T ss_pred             ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhh-h--hhheeecchh
Confidence            7999999999999999999  888887776621    1222233456777776643 33444432 2  2344555443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.074  Score=51.28  Aligned_cols=143  Identities=15%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             CCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008041          118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT  183 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~v  183 (579)
                      ..-+.+...|+|.+.++...           -|.|+.+|. .+..++.+..+-..-+.|+||||++.+..+.   +.|+-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            34678888999986554433           134555554 5666666665555668899999999888887   78888


Q ss_pred             EECCC--C----ee-eEEeecCCCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041          184 FNCSD--H----KK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       184 wd~~~--~----~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                      |++..  +    +. ...+....+..-.++...+|.+.+++. .+| .|.+|+.. ++..     ....-+.....+.+|
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F  262 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF  262 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence            87752  1    11 122223445566778888888775443 444 89999988 5533     333344344455555


Q ss_pred             cCCcccCCCcEEEEEEc
Q 008041          256 DNGGVDDAGLYVLAISE  272 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~~  272 (579)
                      -    -|+.+.|++.+.
T Consensus       263 g----G~~~~~L~iTs~  275 (307)
T COG3386         263 G----GPDLNTLYITSA  275 (307)
T ss_pred             e----CCCcCEEEEEec
Confidence            4    155555555544

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.48  E-value=0.00052  Score=63.03  Aligned_cols=99  Identities=20%  Similarity=0.306  Sum_probs=79.7

Q ss_pred             chhhhhhccce---------eecccCChhhHHHHhhccC------hhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 008041          473 SALEATLFNGI---------DFETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN  537 (579)
Q Consensus       473 ~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp------~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~  537 (579)
                      ..+...|..+-         +.++..+++.|+..||.|.      ...+..||+++..++.++. ..++++.|+...|+.
T Consensus       111 s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~-dfElvQa~l~vFLk~  189 (237)
T PF04192_consen  111 SEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRR-DFELVQAYLSVFLKV  189 (237)
T ss_pred             CHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            34555555543         4667789999999999999      6778899999998886665 599999999999999


Q ss_pred             hcccccCCCC---hhHHHHHHHHHHHH---hh-----hhhhhhhce
Q 008041          538 HGHHLLSQES---LTPMLSSLYKVRKK---KL-----FASAFTCFI  572 (579)
Q Consensus       538 h~~~l~~~~~---l~~~l~~l~~~~~~---r~-----~~~~~~~~~  572 (579)
                      |+..|+..++   |...|..|.+..++   |+     |++-+.+|+
T Consensus       190 Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl  235 (237)
T PF04192_consen  190 HGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFL  235 (237)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            9999999999   99999999988874   44     555555554

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.47  E-value=0.079  Score=49.06  Aligned_cols=175  Identities=11%  Similarity=0.114  Sum_probs=111.6

Q ss_pred             EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspdg~~lasg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|..+|.++-+.+.-|  .|+.+|..+|+......-..     ..|         +..++.+             ++.+.
T Consensus        51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----~~F---------gEGit~~-------------~d~l~  103 (264)
T PF05096_consen   51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----RYF---------GEGITIL-------------GDKLY  103 (264)
T ss_dssp             EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----T-----------EEEEEEE-------------TTEEE
T ss_pred             EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----ccc---------ceeEEEE-------------CCEEE
Confidence            5656777777766544  79999999998776543111     111         1111111             14555


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (579)
                      ...-.++...+||..+-+.+.++.  ..+.=++++  .||+.|+.......++.+|..+.+..+.+....     ..++.
T Consensus       104 qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE  179 (264)
T PF05096_consen  104 QLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE  179 (264)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred             EEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence            666678899999999988877663  234557777  467778777777889999998887777655432     25666


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec------------C---CCCEEEEEEecCCCEEEEEe
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~------------h---~~~v~~l~~s~~~~~l~s~~  218 (579)
                      +.+- +|.+.|-.-  ..|...|..+|+++..+.-            +   ..-.+.|++.|....|+.+|
T Consensus       180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7776 676666554  7899999999998776520            1   24578999999887777766

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.47  E-value=0.082  Score=49.14  Aligned_cols=193  Identities=12%  Similarity=0.153  Sum_probs=105.1

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                      .+-+.|.+.+        +.++++....+.|..++. +|+.+.++.-.-.+..-++++..++.++++.-.++.+.++++.
T Consensus        24 ~SGLTy~pd~--------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   24 LSGLTYNPDT--------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             EEEEEEETTT--------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ccccEEcCCC--------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            5567777654        567778888888988886 4777766633334568899998888777766568999999884


Q ss_pred             CCc------eeeEee-----cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---CeeeE--Ee------ecCCCCEE
Q 008041          148 TGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQ--KF------SGHPGAVR  203 (579)
Q Consensus       148 ~~~------~~~~~~-----~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---~~~~~--~~------~~h~~~v~  203 (579)
                      ...      ....+.     .+...+-.++|+|.++.|+.+-  .-..+|.++.   ...+.  ..      ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      112221     2345789999999877777766  3344444432   11111  11      12335578


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec-------CceeEEeEEecCCcccCCCcEEEEEEcCCeE
Q 008041          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  276 (579)
                      ++.++|....|+.-+..++.|..+|.. ++..   ....+..       .-.-...+++.     ++|. |...++-+..
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~---~~~~L~~g~~gl~~~~~QpEGIa~d-----~~G~-LYIvsEpNlf  244 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELDRQ-GRVV---SSLSLDRGFHGLSKDIPQPEGIAFD-----PDGN-LYIVSEPNLF  244 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-TT---EE---EEEE-STTGGG-SS---SEEEEEE------TT---EEEEETTTEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEECCC-CCEE---EEEEeCCcccCcccccCCccEEEEC-----CCCC-EEEEcCCceE
Confidence            999999876666666688899999944 4322   1222222       11224566676     7775 4555666666


Q ss_pred             EEE
Q 008041          277 YIW  279 (579)
Q Consensus       277 ~iw  279 (579)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.44  E-value=0.015  Score=51.62  Aligned_cols=203  Identities=11%  Similarity=0.111  Sum_probs=117.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCC--CceeeEeec---
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLT--GSLLGKFRA---  157 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~d~~v~iwd~~~--~~~~~~~~~---  157 (579)
                      ++++.+--..|.|.-||..+++.......+.  ++.++.+--.|   .+.+.++..-.|--||...  ....+++..   
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            6777888888999999999887754443332  24444443222   2333344444455677432  222333111   


Q ss_pred             --CCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       158 --~~~~v~~l~~~p~g~~l~~~~-----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                        .+...+.-..+|+|++++...           |.++.|-..  ..+..+...-.--+.++|+.+.+.+...-+.+-.|
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence              133566677899999955432           345555332  12222333334456789998887776655567778


Q ss_pred             EEEE--cCCCccccceeeeeeec----CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041          225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      .-||  ..++.......++.+..    .......+++.     .+|...++.=..|+|.-+|..+|+.+..++-....+
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence            7788  66665444444444433    22222333443     567777777777899999999999987765443333

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.043  Score=58.14  Aligned_cols=124  Identities=12%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      .|.+++.. +.. ..+..+.  ..+.-.|+|+|..+++....            +.+.+.++..+....   ...+.|..
T Consensus       380 ~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Iss  452 (591)
T PRK13616        380 SLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISE  452 (591)
T ss_pred             EEEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCe
Confidence            35555542 222 2333332  37888999998887776532            233333443333222   23457999


Q ss_pred             EEEccCCCEEEEEC-CeEEE---EECCCCee-e---EEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          165 MAVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       165 l~~~p~g~~l~~~~-~~i~v---wd~~~~~~-~---~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      +.|+|||+.++... +.|++   -....|.. +   ..+. +-...+.++.|.+++..++. . .++.-.+|.+
T Consensus       453 l~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~-~~~~~~v~~v  524 (591)
T PRK13616        453 LQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG-R-SDPEHPVWYV  524 (591)
T ss_pred             EEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEE-e-cCCCCceEEE
Confidence            99999999888766 77776   44344531 1   1122 22334688999999986544 3 2333344543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.38  E-value=0.036  Score=55.55  Aligned_cols=212  Identities=16%  Similarity=0.136  Sum_probs=107.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..++|  .+++.|.=| ++|.|..+|.+.|.|++....+..-.-..          .......+..++++.|..-.-+. 
T Consensus        85 ~~g~v--tal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------~~~~~~~~~~vt~ieF~vm~~~~-  150 (395)
T PF08596_consen   85 KQGPV--TALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------SFLSKSSSSYVTSIEFSVMTLGG-  150 (395)
T ss_dssp             -S-SE--EEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG------------T-SS----EEEEEEEEEE-TT-
T ss_pred             cCCcE--eEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------cccccccccCeeEEEEEEEecCC-
Confidence            46889  545877545 99999999999999998888776522111          00112334456677776422110 


Q ss_pred             cccCCcEEEEEECCCeEEEEEccC---CeEEEE---ecCCCCCCEEEEE-EccC-C-------------------CEEEE
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSA---GQLKWR---LSDCHPGGVSAIS-FATH-G-------------------SCIYS  134 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~---~~~~~~---~~~~h~~~V~~l~-~~~~-~-------------------~~l~s  134 (579)
                      .....-++++|+..|.+.+|.+.-   +.....   ....+.++|..+. |+.+ |                   +.++.
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            001145789999999999998752   222111   1124667776665 3222 1                   12444


Q ss_pred             EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc-----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----CCEE
Q 008041          135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS-----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GAVR  203 (579)
Q Consensus       135 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-----p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~----~~v~  203 (579)
                      ...+..++++...+.+...+.....-....+.+-     ..+..|++-.  |.|++|.+-.-+.+..+.-..    ..+.
T Consensus       231 vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~  310 (395)
T PF08596_consen  231 VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS  310 (395)
T ss_dssp             EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred             EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence            4557789999988887766544222233334442     2334444333  999999999888887776432    2234


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          204 FMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      ...++++|..++-.+  ...+.++.+
T Consensus       311 ~ssis~~Gdi~~~~g--psE~~l~sv  334 (395)
T PF08596_consen  311 SSSISRNGDIFYWTG--PSEIQLFSV  334 (395)
T ss_dssp             T-EE-TTS-EEEE-S--SSEEEEEEE
T ss_pred             ccEECCCCCEEEEeC--cccEEEEEE
Confidence            456677777666553  334444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00077  Score=67.89  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEE
Q 008041           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~d~~v~iw  144 (579)
                      ..+.-+.|.|.         -.+||+++.+|.|.++... .+.++.+ .-|..+++ +++|.|||+.++.|-.||+|++.
T Consensus        21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            34455677765         6789999999999999988 6666666 34666777 99999999999999999999999


Q ss_pred             eCCCCceeeEeec-CCCCeeEEEEcc
Q 008041          145 DPLTGSLLGKFRA-STKGISCMAVSS  169 (579)
Q Consensus       145 d~~~~~~~~~~~~-~~~~v~~l~~~p  169 (579)
                      |..++..+..+.. ....|.++-|+|
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            9999887776322 344778888873

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.38  E-value=0.035  Score=55.52  Aligned_cols=75  Identities=11%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecC-----------------CCEEEEEecC
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDN-----------------GKYVLSSAVG  220 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~~-----------------~~~l~s~~~~  220 (579)
                      .+.+++.+|++++.++.+  |.|.++|+.++..++.++|..+. +.-+.....                 ..+|+.-.-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            467889999999988888  99999999999888777765432 111111111                 1244444446


Q ss_pred             CCeEEEEEcCCCccc
Q 008041          221 ERYIALWRTDGVKKQ  235 (579)
Q Consensus       221 d~~i~vwd~~~~~~~  235 (579)
                      -|.|.||+++.+...
T Consensus       389 Rg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  389 RGILEVWSMRQGPRV  403 (415)
T ss_pred             CCeEEEEecCCCCEE
Confidence            788999998887633

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.37  E-value=0.025  Score=59.41  Aligned_cols=193  Identities=15%  Similarity=0.191  Sum_probs=116.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE----------EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS----------AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~----------~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                      +..+++++.++.|+-+|..+|+.++++...-...+.          .+.+  .+..++.++.|+.+...|..+|+.+..+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            567888899999999999999999887432111111          1222  2346777888999999999999988775


Q ss_pred             ecCCC----CeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCC------------------------
Q 008041          156 RASTK----GISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPG------------------------  200 (579)
Q Consensus       156 ~~~~~----~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~------------------------  200 (579)
                      .....    .+++--.--++.+++..+       |.|+.+|.++|+.+-++..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            53211    111111111455554331       6899999999988766532110                        


Q ss_pred             -------CE-EEEEEecCCCEEEEEecC----CC-----------eEEEEEcCCCccccceeeeeeecCce-e------E
Q 008041          201 -------AV-RFMTFSDNGKYVLSSAVG----ER-----------YIALWRTDGVKKQSASCVLAMEHPAV-F------M  250 (579)
Q Consensus       201 -------~v-~~l~~s~~~~~l~s~~~~----d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~-~------~  250 (579)
                             .+ ..+.+.|....++.+..+    ++           .|.--|+++++..   -.++..+++. .      .
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~---W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK---WHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE---EeeeCCCCCCccccCCCCc
Confidence                   11 123555555555554422    11           5666677777644   3333333221 1      1


Q ss_pred             EeEEecCCcccCCCc---EEEEEEcCCeEEEEEcCCceeec
Q 008041          251 DCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      ..+...     .+|+   .++.++.+|.++++|-.+|+.+.
T Consensus       304 ~l~d~~-----~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       304 ILFDLK-----KDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             EEEEec-----cCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            111121     3555   77888999999999999998874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.34  E-value=0.02  Score=58.13  Aligned_cols=131  Identities=11%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +.++++ ..+|.-.||........      ..+.-..++|.+.+ .+++-...++|.++.--+.+....++.. ..+..|
T Consensus        44 gr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I  114 (443)
T PF04053_consen   44 GRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI  114 (443)
T ss_dssp             SSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred             CCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence            555666 78888888885544432      12345667888855 4666666888999632222222233322 223333


Q ss_pred             EEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       166 ~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      -.   |.+|...+ +.|.+||+.+++.++.+...  +|..+.|+++|.+++..+  +..+.+++....
T Consensus       115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~~  175 (443)
T PF04053_consen  115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNLE  175 (443)
T ss_dssp             E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-HH
T ss_pred             Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecch
Confidence            32   88887777 77999999999999998733  489999999999998886  457888775543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0023  Score=68.54  Aligned_cols=93  Identities=20%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE-
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC-  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~-  164 (579)
                      +..+++|+..|.+...|...+-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.+. 
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            5668999999999999887652211111224579999999999999999999999999999999998888777665444 


Q ss_pred             --EEEccCCCEEEEEC
Q 008041          165 --MAVSSDGKMLATAA  178 (579)
Q Consensus       165 --l~~~p~g~~l~~~~  178 (579)
                        +.+..++..+++++
T Consensus       179 i~v~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSD  194 (1206)
T ss_pred             EEEEEeCCCcEEEEcc
Confidence              44556777788887

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.31  E-value=0.016  Score=45.62  Aligned_cols=102  Identities=17%  Similarity=0.278  Sum_probs=63.5

Q ss_pred             ccceEE-EEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            6 IRDILT-SFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         6 V~~l~~-~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      |+++|+ .|.-|| +.|+.|+.|..|+||+-  ...+.++.....                   ++++.-..        
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~-------------------v~~L~~~~--------   52 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDK-------------------VTSLCSLG--------   52 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccc-------------------eEEEEEcC--------
Confidence            444432 344455 58999999999999983  456666653221                   22222211        


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEE
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVC  142 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~~-~l~s~~~d~~v~  142 (579)
                        ...++.+..+|+|-+|+-  ...+++....|.  ++++.+..   ||. .|++|-.+|.|-
T Consensus        53 --~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   53 --GGRFAYALANGTVGVYDR--SQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --CCEEEEEecCCEEEEEeC--cceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              566999999999999975  344555543333  66665543   332 488888888774

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.29  E-value=0.23  Score=49.60  Aligned_cols=162  Identities=11%  Similarity=0.125  Sum_probs=90.3

Q ss_pred             EEEEEccCCeEEE-Eec---CCCCCCEEEEEEccCCCEEEEE--eCCC---cEEEEeCCCCceeeEeecC-CC---CeeE
Q 008041           98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC  164 (579)
Q Consensus        98 i~iwd~~~~~~~~-~~~---~~h~~~V~~l~~~~~~~~l~s~--~~d~---~v~iwd~~~~~~~~~~~~~-~~---~v~~  164 (579)
                      +.++|+.+++... ...   ..-..-+..+.|.++++.|+..  ..+.   .+.++|..++.....+... .+   ....
T Consensus       160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~  239 (353)
T PF00930_consen  160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP  239 (353)
T ss_dssp             EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred             EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence            6667777776531 111   1233458899999999844433  3332   4667788777654433322 22   2235


Q ss_pred             EEEc-cCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEE-EEEecCCCEEEEEecCC----CeEEEEEcC-CC
Q 008041          165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV  232 (579)
Q Consensus       165 l~~~-p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~~d----~~i~vwd~~-~~  232 (579)
                      ..+. +++..++..+     .+|++++...+. ...+....-.|.. +.++++++.++..+..+    ..|+.-++. .+
T Consensus       240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            5655 7777666554     488899987776 3456656667755 67888888666555332    245555666 33


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      ...      .+...........|+     |++++++-..
T Consensus       319 ~~~------~LT~~~~~~~~~~~S-----pdg~y~v~~~  346 (353)
T PF00930_consen  319 EPK------CLTCEDGDHYSASFS-----PDGKYYVDTY  346 (353)
T ss_dssp             EEE------ESSTTSSTTEEEEE------TTSSEEEEEE
T ss_pred             CeE------eccCCCCCceEEEEC-----CCCCEEEEEE
Confidence            322      222222111345666     8988876554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.26  E-value=0.18  Score=51.21  Aligned_cols=97  Identities=22%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCC
Q 008041          125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA  201 (579)
Q Consensus       125 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-~~~  201 (579)
                      ++.+....+....++.+.+.+-...+.   +. ..+++..+++||+|+++|.-.  |.+.+.+.+-.+.+..+... ...
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            344444444444555555444222211   11 246899999999999998776  88888887666666666533 345


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          202 VRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       202 v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ...+.|+-+...++.   ....+.+..
T Consensus       262 p~~~~WCG~dav~l~---~~~~l~lvg  285 (410)
T PF04841_consen  262 PKQMAWCGNDAVVLS---WEDELLLVG  285 (410)
T ss_pred             CcEEEEECCCcEEEE---eCCEEEEEC
Confidence            677888765433322   244555555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.21  E-value=0.082  Score=57.60  Aligned_cols=198  Identities=15%  Similarity=0.192  Sum_probs=116.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-------CEEEEEEcc----------------CCCEEEEEeCCCcEE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC  142 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-------~V~~l~~~~----------------~~~~l~s~~~d~~v~  142 (579)
                      +..+++++.++.|.-.|..+|+.++++......       ....+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            677899999999999999999999887432111       122333321                234788888999999


Q ss_pred             EEeCCCCceeeEeecCCCCe-------------eEEEEcc---CCCEEEEE------------CCeEEEEECCCCeeeEE
Q 008041          143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS---DGKMLATA------------AGQLKTFNCSDHKKMQK  194 (579)
Q Consensus       143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~~p---~g~~l~~~------------~~~i~vwd~~~~~~~~~  194 (579)
                      -.|.++|+....|.. .+.+             ..+.-.|   ++ .+++|            +|.|+-+|.++|+.+-.
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            999999998877642 1111             0111122   34 44444            26799999999998877


Q ss_pred             eecC----C-----C--------CE-EEEEEecCCCEEEEEec-----------------CCCeEEEEEcCCCcccccee
Q 008041          195 FSGH----P-----G--------AV-RFMTFSDNGKYVLSSAV-----------------GERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       195 ~~~h----~-----~--------~v-~~l~~s~~~~~l~s~~~-----------------~d~~i~vwd~~~~~~~~~~~  239 (579)
                      +..-    .     +        .+ ..+++.+....++....                 ..+.|.-.|.++++..   -
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W  428 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---W  428 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---E
Confidence            6421    0     0        01 22344444333333210                 1234555566666533   2


Q ss_pred             eeeeecCce-e------EEeEEecCCcccCCCc---EEEEEEcCCeEEEEEcCCceeecccCC
Q 008041          240 VLAMEHPAV-F------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       240 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      .+...|++. .      ...+.+.    ..+|+   .++.++.+|.++++|-++|+.+...+.
T Consensus       429 ~~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       429 VFQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             EecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            333322211 0      1111121    02553   789999999999999999998865443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.20  E-value=0.34  Score=49.60  Aligned_cols=188  Identities=13%  Similarity=0.122  Sum_probs=104.1

Q ss_pred             CcEEEEE-ECCCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----------cEEEEeCCCC
Q 008041           86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----------MVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~-~~~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----------~v~iwd~~~~  149 (579)
                      +++++.+ +.+|.    ++++|+.+|+.+...+...  .-..+.|.++++.|+....+.           .|+.|.+.+.
T Consensus       135 g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~  212 (414)
T PF02897_consen  135 GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP  212 (414)
T ss_dssp             SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred             CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence            6666655 45555    9999999998765443211  112399999988876665333           3788888766


Q ss_pred             ce--eeEeecCCCC--eeEEEEccCCCEEEEEC------CeEEEEECCCC----eeeEEeecCCCCEEEEEEecCCCEEE
Q 008041          150 SL--LGKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       150 ~~--~~~~~~~~~~--v~~l~~~p~g~~l~~~~------~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      ..  ...|......  ...+..++|+++++...      ..+++.++..+    .....+..+...+....-+..+.+++
T Consensus       213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi  292 (414)
T PF02897_consen  213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI  292 (414)
T ss_dssp             GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred             hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence            43  2445554443  56888999999988654      35888888874    23334433444443333333444444


Q ss_pred             EEec--CCCeEEEEEcCCCccccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCC--eEEEEEcC
Q 008041          216 SSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQ  282 (579)
Q Consensus       216 s~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~  282 (579)
                      .+..  ..+.|...++.......... ....+.. ..+..+...      .+.+++....++  .|++|++.
T Consensus       293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  293 LTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSLF------KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEEE------TTEEEEEEEETTEEEEEEEETT
T ss_pred             eeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEEE------CCEEEEEEEECCccEEEEEECC
Confidence            4321  23466667777665321111 2222322 344444332      335555555666  68888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.11  E-value=0.0017  Score=39.99  Aligned_cols=39  Identities=33%  Similarity=0.693  Sum_probs=33.5

Q ss_pred             CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ++.+..+..|...|.++.|++++..+++++ .|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence            355677788999999999999998888887 799999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.10  E-value=0.066  Score=56.71  Aligned_cols=181  Identities=14%  Similarity=0.112  Sum_probs=94.3

Q ss_pred             CcEEEEEECC-Ce-----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCce--e
Q 008041           86 SSLLVLGTGG-GD-----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----VCEIDPLTGSL--L  152 (579)
Q Consensus        86 ~~~l~~~~~~-g~-----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----v~iwd~~~~~~--~  152 (579)
                      +.+.++|+.+ |.     +..||+.+++-.. ...-.......-.-.-+|...+.||.||.     |-.||..+.+-  +
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            5677888888 33     8899999887432 11111111111111226778888988864     67788665432  2


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                      ..+........  ...-+|++.++|+        .++..||..+++...  .+..-.... .++. -++...+.|| .|+
T Consensus       412 a~m~~~r~~~g--v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG-~~~  486 (571)
T KOG4441|consen  412 APMLTRRSGHG--VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGG-FDG  486 (571)
T ss_pred             CCCCcceeeeE--EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECC-ccC
Confidence            11111111111  1223688888877        368899988775432  221111111 1222 3455566665 454


Q ss_pred             -----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcC
Q 008041          223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQ  282 (579)
Q Consensus       223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~  282 (579)
                           +|..||..+.+..   .+...........++.       -+++..++|+.||     +|..||..
T Consensus       487 ~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~-------~~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  487 TSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVV-------LGGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             CCccceEEEEcCCCCcee---EcccCccccccccEEE-------ECCEEEEEecccCccccceeEEcCCC
Confidence                 3778888887643   2222223333333333       2567777787776     45555543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.10  E-value=0.24  Score=46.06  Aligned_cols=187  Identities=12%  Similarity=0.138  Sum_probs=96.6

Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -++|+|+.+ ++|+....+.|...+. +|+.+..+.-...                 .+.-.+.+..          +..
T Consensus        26 GLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-----------------~D~EgI~y~g----------~~~   77 (248)
T PF06977_consen   26 GLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-----------------GDYEGITYLG----------NGR   77 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------SSEEEEEE-S----------TTE
T ss_pred             ccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-----------------CCceeEEEEC----------CCE
Confidence            349999866 4555556788877886 5787776642110                 1122222221          344


Q ss_pred             EEEEE-CCCeEEEEEccCCe--E----EEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeeE
Q 008041           89 LVLGT-GGGDVLALAVSAGQ--L----KWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---GSLLGK  154 (579)
Q Consensus        89 l~~~~-~~g~i~iwd~~~~~--~----~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~  154 (579)
                      +++.. .++.+.++++....  .    ...+    ...++..+-+++|.|.++.|+.+-......+|.+..   ......
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred             EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence            55555 47889888883321  1    1111    123566799999999988888887776666665543   111111


Q ss_pred             --e---e---cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCC---------CCEEEEEEecCCCEE
Q 008041          155 --F---R---ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYV  214 (579)
Q Consensus       155 --~---~---~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l  214 (579)
                        .   .   .....+.+++++|.. ++++..+  ..|..+| .+|+.+..+.-..         ...-.|+|.++|+..
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence              1   1   123367899999965 4455554  7888999 6777655543111         346789999999765


Q ss_pred             EEEecCCCeEEEE
Q 008041          215 LSSAVGERYIALW  227 (579)
Q Consensus       215 ~s~~~~d~~i~vw  227 (579)
                      ++ + +-+..+++
T Consensus       237 Iv-s-EpNlfy~f  247 (248)
T PF06977_consen  237 IV-S-EPNLFYRF  247 (248)
T ss_dssp             EE-E-TTTEEEEE
T ss_pred             EE-c-CCceEEEe
Confidence            55 4 55555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0035  Score=63.40  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=76.8

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee-EEEEccCCCEEEEEC--CeEEEEECCCCeeeE
Q 008041          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~  193 (579)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-+...++ +++|.|||+.+++|-  |+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3467889999999999999999999999987 888888887777777 999999999999997  999999999998776


Q ss_pred             Eee-cCCCCEEEEEEec
Q 008041          194 KFS-GHPGAVRFMTFSD  209 (579)
Q Consensus       194 ~~~-~h~~~v~~l~~s~  209 (579)
                      .+. .-...|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            632 2346677777863

>smart00320 WD40 WD40 repeats

Probab=96.98  E-value=0.0025  Score=39.25  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd  145 (579)
                      ..|...|.++.|++++..+++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            46888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.056  Score=53.92  Aligned_cols=140  Identities=17%  Similarity=0.354  Sum_probs=96.4

Q ss_pred             CcEEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEeCCCC-c-eeeEe
Q 008041           86 SSLLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLTG-S-LLGKF  155 (579)
Q Consensus        86 ~~~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~~~d~~v~iwd~~~~-~-~~~~~  155 (579)
                      .++|+. +.....++-.|+..|+.+.... -|.. |+-+.+.|+++       .-+.|-.|..|.-||.+-. . .+..-
T Consensus       345 snlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  345 SNLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             cceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            444444 4445569999999999986663 2443 77777777653       2345667889999998732 2 12222


Q ss_pred             ecC----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          156 RAS----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       156 ~~~----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ++|    .....|.+-..+| ++++|+  |.|++||- .+.. ..-+++-..+|..+..+.+|+++++++  +.++.+.+
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~  498 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLID  498 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEE
Confidence            222    2367788888777 455555  99999996 5544 334688889999999999999998875  67888877


Q ss_pred             cCC
Q 008041          229 TDG  231 (579)
Q Consensus       229 ~~~  231 (579)
                      +.-
T Consensus       499 t~~  501 (644)
T KOG2395|consen  499 TLI  501 (644)
T ss_pred             Eec
Confidence            643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.97  E-value=0.27  Score=45.43  Aligned_cols=180  Identities=13%  Similarity=0.140  Sum_probs=104.8

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeC------------------CCcE
Q 008041           86 SSLLVLGTGG-----GDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGA------------------DGMV  141 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~------------------d~~v  141 (579)
                      +.+|+..-+|     |.|-|||...+-. +.++ ..|.-....+.+.+||+.++.+..                  .-++
T Consensus       125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl  203 (366)
T COG3490         125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL  203 (366)
T ss_pred             CcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence            5555554443     4599999986533 2233 567777788999999999877632                  1123


Q ss_pred             EEEeCCCCceeeEe--e--cCCCCeeEEEEccCCCEEEEEC--Ce-----EEEEECCCCeeeEEee-------cCCCCEE
Q 008041          142 CEIDPLTGSLLGKF--R--ASTKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVR  203 (579)
Q Consensus       142 ~iwd~~~~~~~~~~--~--~~~~~v~~l~~~p~g~~l~~~~--~~-----i~vwd~~~~~~~~~~~-------~h~~~v~  203 (579)
                      .+.|..+|+.+.+.  .  -+.-.|..++..+||+..+.+-  |.     -.+=-...++.+.-+.       ...+.|-
T Consensus       204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig  283 (366)
T COG3490         204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG  283 (366)
T ss_pred             EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence            44454556555442  2  2334788899999988776654  21     1111112333333221       1234577


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      +|+.+.+..+++.++-..+...+||..++....     .  .  ....+.-..     +...-+++.+.+|.+.++.
T Consensus       284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~-----~--a--~l~daaGva-----~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVS-----E--A--ALPDAAGVA-----AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             heeecccCCeEEEecCCCCeEEEEEcCCCcEEe-----c--c--cccccccce-----eccCceEEecCCceEEecc
Confidence            888887666666666556678899999986431     1  1  111111111     3445567777889988874

>PHA02713 hypothetical protein; Provisional

Probab=96.96  E-value=0.076  Score=56.36  Aligned_cols=182  Identities=7%  Similarity=-0.001  Sum_probs=90.9

Q ss_pred             CcEEEEEECC------CeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 008041           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~  152 (579)
                      +.++++|+.+      ..+..||+.++... ....-..  .....+  .-+|+..+.||.++     ++..||..+.+-.
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            5566666643      24888998887642 1111111  111222  22677777777654     4888998765321


Q ss_pred             --eEeecCCCCeeEEEEccCCCEEEEEC--C-----------------------eEEEEECCCCeee--EEeecCCCCEE
Q 008041          153 --GKFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKKM--QKFSGHPGAVR  203 (579)
Q Consensus       153 --~~~~~~~~~v~~l~~~p~g~~l~~~~--~-----------------------~i~vwd~~~~~~~--~~~~~h~~~v~  203 (579)
                        ..+.........+.  -+|++.+.|+  +                       .+..||..+.+-.  ..+...... .
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~  457 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-P  457 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-C
Confidence              11221111222222  2677777776  1                       3677887776432  222111111 1


Q ss_pred             EEEEecCCCEEEEEecCC-----CeEEEEEcCC-CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC--e
Q 008041          204 FMTFSDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--V  275 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~  275 (579)
                      +++ .-+++..+.||..+     ..+..||+.+ .+-.   .+..+.........+.       -+|+..++|+.||  .
T Consensus       458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~-------~~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---LITTTESRLSALHTIL-------HDNTIMMLHCYESYML  526 (557)
T ss_pred             cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCee---EccccCcccccceeEE-------ECCEEEEEeeecceee
Confidence            122 23456656665321     2467888887 4422   2233333333333333       3678888888887  5


Q ss_pred             EEEEEcCCc
Q 008041          276 CYIWYGQNI  284 (579)
Q Consensus       276 i~iwd~~~~  284 (579)
                      +..||..+.
T Consensus       527 ~e~yd~~~~  535 (557)
T PHA02713        527 QDTFNVYTY  535 (557)
T ss_pred             hhhcCcccc
Confidence            555655443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.95  E-value=0.48  Score=47.01  Aligned_cols=138  Identities=11%  Similarity=0.009  Sum_probs=75.9

Q ss_pred             EEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEe--------------------CCCcEEEEeCCCCceeeEe
Q 008041           98 VLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAG--------------------ADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~--------------------~d~~v~iwd~~~~~~~~~~  155 (579)
                      +.++|-.+.+...+.....  ..--.++-|.|..+.++|..                    .-.++.+||+.+.+.++++
T Consensus       159 f~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i  238 (461)
T PF05694_consen  159 FVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI  238 (461)
T ss_dssp             EEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred             EEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence            8888888777765554322  23346778888888888763                    2357999999999999998


Q ss_pred             ecCCC--CeeEEEEcc--CCCEEEEEC---CeEEEEEC-CCCe----eeEEeecC-----------------CCCEEEEE
Q 008041          156 RASTK--GISCMAVSS--DGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH-----------------PGAVRFMT  206 (579)
Q Consensus       156 ~~~~~--~v~~l~~~p--~g~~l~~~~---~~i~vwd~-~~~~----~~~~~~~h-----------------~~~v~~l~  206 (579)
                      .-...  .+..+.|..  +..+-.++.   ++|..|-- +.++    .+.++..-                 ..-|+.|.
T Consensus       239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred             ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence            75433  355677654  445544444   56666543 3432    22222211                 24578999


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .|.|.++|..++-.+|.|+.||+......
T Consensus       319 iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             E-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             EccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            99999999998878999999999886543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.90  E-value=0.24  Score=47.49  Aligned_cols=140  Identities=17%  Similarity=0.207  Sum_probs=89.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----------  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----------  155 (579)
                      ++.+++|+.+| +++++........+..  +..+|..+...|+-+.+++-+ |+.++++++..-......          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            77899999999 9999993333222332  334599999999877766654 699999998754433310          


Q ss_pred             ----ecCCCCeeEEE---EccCCCEEEEEC-CeEEEEECCCC-----eeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041          156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       156 ----~~~~~~v~~l~---~~p~g~~l~~~~-~~i~vwd~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                          ......+...+   -...+..++++. ..|.+|.....     +..+++. -...+..+.|.  ++.++.+.  .+
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~  157 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK  157 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence                11122444444   222344555555 78888877653     3455554 45778899998  44666664  45


Q ss_pred             eEEEEEcCCCcc
Q 008041          223 YIALWRTDGVKK  234 (579)
Q Consensus       223 ~i~vwd~~~~~~  234 (579)
                      ...+.|+.++..
T Consensus       158 ~f~~idl~~~~~  169 (275)
T PF00780_consen  158 GFYLIDLNTGSP  169 (275)
T ss_pred             ceEEEecCCCCc
Confidence            588899987653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.086  Score=48.51  Aligned_cols=124  Identities=17%  Similarity=0.322  Sum_probs=83.0

Q ss_pred             EEEEEECCCe-EEEEEccCCeEEEEec-------CCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCC-ceee
Q 008041           88 LLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTG-SLLG  153 (579)
Q Consensus        88 ~l~~~~~~g~-i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~-----d~~v~iwd~~~~-~~~~  153 (579)
                      -++.+-.=|+ ..++|..+.+.+..+.       .+|.      .|+|||.+|+..-.     -|.|=+||.+.+ +.+.
T Consensus        82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvg  155 (366)
T COG3490          82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVG  155 (366)
T ss_pred             eEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceec
Confidence            3555555565 7788888776543331       2343      68999999987643     367999998754 5566


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEECCeEE--------------------EEECCCCeeeEE--ee--cCCCCEEEEEEec
Q 008041          154 KFRASTKGISCMAVSSDGKMLATAAGQLK--------------------TFNCSDHKKMQK--FS--GHPGAVRFMTFSD  209 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~~~i~--------------------vwd~~~~~~~~~--~~--~h~~~v~~l~~s~  209 (579)
                      .|..|.-....+.+.+||+.++.+.|-|.                    +.|-.+|+.+.+  ++  -+...|..++..+
T Consensus       156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~  235 (366)
T COG3490         156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR  235 (366)
T ss_pred             ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence            78888888899999999999999875333                    334344444322  22  3345677888888


Q ss_pred             CCCEEEEE
Q 008041          210 NGKYVLSS  217 (579)
Q Consensus       210 ~~~~l~s~  217 (579)
                      ||+.++.+
T Consensus       236 dgtvwfgc  243 (366)
T COG3490         236 DGTVWFGC  243 (366)
T ss_pred             CCcEEEEE
Confidence            88755443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.80  E-value=0.73  Score=46.84  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=28.0

Q ss_pred             CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       199 ~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .+++..+++||+|++++.-. .+|.+.+.+..-.+
T Consensus       216 ~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSE  249 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccc
Confidence            46899999999999998887 68998888765544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.029  Score=55.84  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             ccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           14 SPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        14 spdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      ..+.++|. ++..-..|+=.|++.|+.+.+++-+.. +....+.++..-.++.                    ...-++|
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~--------------------~e~TlvG  400 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT--------------------SEQTLVG  400 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc--------------------ccccEEe
Confidence            34445444 444445677779999999988876554 4444444441111111                    3334788


Q ss_pred             ECCCeEEEEEccCCeE-EEEecCCCC----CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEE
Q 008041           93 TGGGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMA  166 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~-~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~l~  166 (579)
                      -.+..|.-||++-... +-...++|.    ..-.|++-..+| +++.||.+|.|++||- .+.... .+++-..+|..+.
T Consensus       401 Ls~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVd  478 (644)
T KOG2395|consen  401 LSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVD  478 (644)
T ss_pred             ecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEE
Confidence            8999999999984322 111222332    234566655555 7999999999999995 554444 4778888999999


Q ss_pred             EccCCCEEEEEC-CeEEEEEC
Q 008041          167 VSSDGKMLATAA-GQLKTFNC  186 (579)
Q Consensus       167 ~~p~g~~l~~~~-~~i~vwd~  186 (579)
                      .+.+|+++++.+ ..+.+.++
T Consensus       479 vtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  479 VTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             eeccCcEEEEecccEEEEEEE
Confidence            999999988877 67777665

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.71  E-value=0.62  Score=50.97  Aligned_cols=206  Identities=15%  Similarity=0.212  Sum_probs=117.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEE-eeeccccc------ccccCCcEE
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL   89 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l   89 (579)
                      +..+..++.++.|.-.|..+|+.+..+..........        .+.  .+.-+. |.......      ........+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~--------~~~--~cRGvay~~~p~~~~~~~~~~~p~~~~~rV  263 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR--------QHQ--TCRGVSYYDAPAAAAGPAAPAAPADCARRI  263 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc--------ccc--cccceEEecCCcccccccccccccccCCEE
Confidence            4567778888999999999999998886432211000        000  000011 11100000      000125678


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCcEEEE
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI  144 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-------------~l~~~~--~~~~l~s~~~----------d~~v~iw  144 (579)
                      ++++.|+.+.-.|..+|+.++.+-  ..+.|.             ...-.|  .+..++.|+.          +|.|+-+
T Consensus       264 ~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       264 ILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            999999999999999999987652  222110             111112  1335556642          6889999


Q ss_pred             eCCCCceeeEeecC---------CC--------Ce-eEEEEccCCCEEEEEC--------------------CeEEEEEC
Q 008041          145 DPLTGSLLGKFRAS---------TK--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC  186 (579)
Q Consensus       145 d~~~~~~~~~~~~~---------~~--------~v-~~l~~~p~g~~l~~~~--------------------~~i~vwd~  186 (579)
                      |.++|+.+..+...         .+        .+ ..++++|+..++..+.                    +.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            99999988876521         00        01 2344555444433311                    46777888


Q ss_pred             CCCeeeEEeec--CC-------CCEEEEEEec-CCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          187 SDHKKMQKFSG--HP-------GAVRFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       187 ~~~~~~~~~~~--h~-------~~v~~l~~s~-~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ++|+..-.++.  |.       ....-+.+.. +|+   .++.++ .+|.+++.|-++++..
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI  482 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence            99988777653  21       1111223333 553   555554 8999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.68  E-value=0.094  Score=55.60  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CCEEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------
Q 008041          118 GGVSAISFATHGSCIYSAG------ADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------  179 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~------~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~---------  179 (579)
                      ..+.+.+++|+|+.++...      .|.  .+.+++. .+.. ..+.. ....++-.|+|||+.+++.. +         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999876654      243  4555564 2333 33322 22478899999988777664 2         


Q ss_pred             ----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          180 ----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       180 ----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                          .+++.+++.+....   ...+.|..+.|||||..++...  ++.|++
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V  472 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL  472 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence                33333443333221   2356799999999999988875  577777

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.62  E-value=0.13  Score=40.53  Aligned_cols=98  Identities=16%  Similarity=0.302  Sum_probs=62.6

Q ss_pred             EEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE
Q 008041          120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       120 V~~l~~~~---~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~  193 (579)
                      |+++++..   +| +.|+.|+.|..|++|+  ..+.+..+.. ...|++++-...++ ++.+.  |+|-+|+-.  +.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGR-FAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCE-EEEEecCCEEEEEeCc--ceee
Confidence            56666654   33 4599999999999998  3466777764 45788888777655 55444  999999753  2333


Q ss_pred             EeecCCCCEEEEEEec-C--C-CEEEEEecCCCeEE
Q 008041          194 KFSGHPGAVRFMTFSD-N--G-KYVLSSAVGERYIA  225 (579)
Q Consensus       194 ~~~~h~~~v~~l~~s~-~--~-~~l~s~~~~d~~i~  225 (579)
                      ..+. ...+.++.+.. +  | +.|+++- .+|.|-
T Consensus        76 RiKS-K~~~~~~~~~D~~gdG~~eLI~Gw-snGkve  109 (111)
T PF14783_consen   76 RIKS-KNQVTSMAFYDINGDGVPELIVGW-SNGKVE  109 (111)
T ss_pred             eecc-CCCeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence            4443 23356665543 2  2 2566665 577664

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.33  E-value=0.98  Score=44.89  Aligned_cols=192  Identities=11%  Similarity=0.064  Sum_probs=94.6

Q ss_pred             CcEEEEEECCCeEEEEEccCC----eEEEEecCC---C----CCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAG----QLKWRLSDC---H----PGGVSAISFATHGSCIYSAG------ADGMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~---h----~~~V~~l~~~~~~~~l~s~~------~d~~v~iwd~~~  148 (579)
                      ..+++-|-.++.|+|.|+.+.    ++...+ +.   +    -.....+.--|+|+.++|+-      .-|-+.+.|-++
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvI-e~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVI-EPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE--HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeee-CHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            334444557888999999853    233222 11   1    11223344457898888863      234688888877


Q ss_pred             CceeeEeecCCC---CeeEEEEccCCCEEEEEC----------------------CeEEEEECCCCeeeEEeecCC--CC
Q 008041          149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA  201 (579)
Q Consensus       149 ~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~----------------------~~i~vwd~~~~~~~~~~~~h~--~~  201 (579)
                      .+....+.....   .-+..-|.|.-+.+++..                      +++.+||+.+.+.++++.--.  ..
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            777777665332   345677888888888753                      379999999999998886332  23


Q ss_pred             EEEEEEe--cCCCEEEEEecCCCeEEEEEc-CCCccccceeeeeeecC-----------------ceeEEeEEecCCccc
Q 008041          202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD  261 (579)
Q Consensus       202 v~~l~~s--~~~~~l~s~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~  261 (579)
                      ...+.|.  |+..+=++++.-..+|..|-- ..++ -..+.+..+...                 ...+.-+..+     
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-----  320 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-----  320 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence            5677775  444444444334556666554 3332 112223332211                 1233444455     


Q ss_pred             CCCcEEEEEEc-CCeEEEEEcCCc
Q 008041          262 DAGLYVLAISE-TGVCYIWYGQNI  284 (579)
Q Consensus       262 ~~~~~l~~~~~-dg~i~iwd~~~~  284 (579)
                      .|.++|...+. +|.|+.||+...
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCEEEEEcccCCcEEEEecCCC
Confidence            78899988886 999999998654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA03098 kelch-like protein; Provisional

Probab=96.25  E-value=0.28  Score=52.17  Aligned_cols=142  Identities=8%  Similarity=0.045  Sum_probs=70.4

Q ss_pred             CcEEEEEECCC------eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceee
Q 008041           86 SSLLVLGTGGG------DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~  153 (579)
                      +.++++|+.++      .+..||+.+++...... .........+.  -+++.++.||.+     ..+..||..+++-..
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            45566666443      47889988877532110 10111122222  256677777755     357788877653221


Q ss_pred             --EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041          154 --KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       154 --~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                        .+...... .+++ .-++++++.|+        +.+..||..+++-..  .++..... .++ ...+++.++.||..+
T Consensus       373 ~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~  448 (534)
T PHA03098        373 EPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISY  448 (534)
T ss_pred             CCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccC
Confidence              11111111 1222 23677777766        358899988764322  11111111 122 223555556555211


Q ss_pred             -------CeEEEEEcCCCc
Q 008041          222 -------RYIALWRTDGVK  233 (579)
Q Consensus       222 -------~~i~vwd~~~~~  233 (579)
                             ..+.+||+.+.+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCCCcccceEEEecCCCCc
Confidence                   237888887765

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.21  E-value=2.5  Score=46.10  Aligned_cols=133  Identities=11%  Similarity=0.021  Sum_probs=67.9

Q ss_pred             CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecC--CC
Q 008041          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDN--GK  212 (579)
Q Consensus       139 ~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~--~~  212 (579)
                      ..|++++-.  .....+... +.++....+.+...++.++  +.+...++..+. ++....  ....|.|+.++|-  ++
T Consensus       470 ~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~  545 (1096)
T KOG1897|consen  470 NSIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAP  545 (1096)
T ss_pred             ccEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCC
Confidence            347777633  233344433 3344444444444555555  344444555443 333322  2477999999974  33


Q ss_pred             E---EEEEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          213 Y---VLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       213 ~---l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      .   ++..|.++..+.+--.......  .+...+.  .-+..+-...+.     .|..+|.++..||.+.-|.++
T Consensus       546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~--~~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  546 NKSRLLAVGLWSDISMILTFLPDLIL--ITHEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             CcceEEEEEeecceEEEEEECCCcce--eeeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEEE
Confidence            2   4444457776665543332211  0111111  112222333343     568999999999988766543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.19  E-value=0.19  Score=52.93  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             EEEEECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCC---------CceeeE--
Q 008041           89 LVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLT---------GSLLGK--  154 (579)
Q Consensus        89 l~~~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~v~iwd~~~---------~~~~~~--  154 (579)
                      +++...++ .+.|||...+....+-.-...+.|.++.|.  |+|+.+++.|-.+.|.++-...         ...++.  
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~  122 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID  122 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence            44445444 499999999886544322457889999985  6899999999999999986421         123333  


Q ss_pred             eecCC-CCeeEEEEccCCCEEEEECCeEEEEEC
Q 008041          155 FRAST-KGISCMAVSSDGKMLATAAGQLKTFNC  186 (579)
Q Consensus       155 ~~~~~-~~v~~l~~~p~g~~l~~~~~~i~vwd~  186 (579)
                      +..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus       123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence            23344 588999999999998888899999974

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.14  E-value=0.012  Score=52.31  Aligned_cols=140  Identities=14%  Similarity=0.169  Sum_probs=76.1

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA  166 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~  166 (579)
                      .+..-+.+|.|.-+++...+...+....|...-.-+   .-+..+++|+.+|.|++|..... .....+......|.++-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            345566677777777765544322222233321111   23456889999999999987522 21111222222333322


Q ss_pred             -EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEE--ecCCCeEEEEEcCC
Q 008041          167 -VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS--AVGERYIALWRTDG  231 (579)
Q Consensus       167 -~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~--~~~d~~i~vwd~~~  231 (579)
                       -..++.+..++.  |.|+.|++.-++.+.....|. .++..+..+..++++.++  + .|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence             223444555555  899999999888777766676 444444444444444444  3 355555555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.05  E-value=1.1  Score=41.95  Aligned_cols=156  Identities=11%  Similarity=0.044  Sum_probs=101.5

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                      .+.+.|+|.         .+.+++.++...-.++=..+|+.+.++.-..-...-++.+..+|++.++--.++.++++.+.
T Consensus        88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            667777775         56678888888888888888888876642223445677888888877777788888888776


Q ss_pred             CCceeeE----------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe-e--eEEeecC-------CCCEEEE
Q 008041          148 TGSLLGK----------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-K--MQKFSGH-------PGAVRFM  205 (579)
Q Consensus       148 ~~~~~~~----------~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~-~--~~~~~~h-------~~~v~~l  205 (579)
                      .+..+..          ......+...++|+|.+..|..+-  +-+.||.+..+. .  +.....+       -..|+++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            5422211          111245788999999988888887  555555444222 1  1111111       1346778


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          206 TFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .|++....+++-|.+++.+...|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            888766666666667888887777665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.82  E-value=0.32  Score=43.59  Aligned_cols=82  Identities=20%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             CcEEEEEECCCeEEEEE--ccCCeE-----EEEecC----CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           86 SSLLVLGTGGGDVLALA--VSAGQL-----KWRLSD----CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd--~~~~~~-----~~~~~~----~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                      ..+.++-+.+..|.-||  ..+|..     +..+.+    +|. ..-+++...+|+.++++-..++|...|..+|+.+.+
T Consensus       170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e  248 (310)
T KOG4499|consen  170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE  248 (310)
T ss_pred             cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence            45567777788887777  666643     223322    111 123455566888888888899999999999999999


Q ss_pred             eecCCCCeeEEEEc
Q 008041          155 FRASTKGISCMAVS  168 (579)
Q Consensus       155 ~~~~~~~v~~l~~~  168 (579)
                      ++-....|+|++|-
T Consensus       249 iklPt~qitsccFg  262 (310)
T KOG4499|consen  249 IKLPTPQITSCCFG  262 (310)
T ss_pred             EEcCCCceEEEEec
Confidence            98888899999996

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.78  E-value=1.7  Score=40.51  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             CCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCEEEEEC--CeEEEEECCCCeee
Q 008041          118 GGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM  192 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~  192 (579)
                      .-..++.|..+|..+-+.+.-|  .|+.+|+.+|+......-... --..++...| ++....=  +...+||..+.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence            3456888878888888888766  799999999987766443322 2234444433 3322222  89999999999998


Q ss_pred             EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCce---eEEeEEecCCcccCCCcEEEE
Q 008041          193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       193 ~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~  269 (579)
                      .++.- .+.=..++  .|++.|+.+. ....++.+|..+-+....   ........   .+.-+-+      -+|...|-
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~---i~V~~~g~pv~~LNELE~------i~G~IyAN  190 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRT---IQVTDNGRPVSNLNELEY------INGKIYAN  190 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEE---EE-EETTEE---EEEEEE------ETTEEEEE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEE---EEEEECCEECCCcEeEEE------EcCEEEEE
Confidence            88853 33335555  5666666653 567899999877654321   11112222   2222223      25555554


Q ss_pred             EEcCCeEEEEEcCCceeecc
Q 008041          270 ISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       270 ~~~dg~i~iwd~~~~~~~~~  289 (579)
                      .=....|..-|..+|+....
T Consensus       191 VW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEE
T ss_pred             eCCCCeEEEEeCCCCeEEEE
Confidence            44566777778887776543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.76  E-value=2  Score=41.32  Aligned_cols=153  Identities=16%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEE-CCCCeee
Q 008041          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN-CSDHKKM  192 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd-~~~~~~~  192 (579)
                      +-.+.+..+..++||+++++++.-....-||.....-...-+.....|.+|.|.|++.+.+.+. |.|+.=+ ....+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence            3446788999999999888775555555687432211222223456999999999998877766 7888877 2222221


Q ss_pred             EE----eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee-ecCceeEEeEEecCCcccCCCcEE
Q 008041          193 QK----FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       193 ~~----~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                      ..    +......+..++|.+++...++++  .|.+ +.+.+.++.-.  ..... .-+.....+.++.     |  ..-
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW~--~~~~~~~~~~n~~~i~f~~-----~--~~g  289 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTWQ--KDRVGENVPSNLYRIVFVN-----P--DKG  289 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS-E--E-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccce--ECccccCCCCceEEEEEcC-----C--Cce
Confidence            11    111223478899999887777654  5643 34555554220  11111 1234455556554     3  445


Q ss_pred             EEEEcCCeEEEE
Q 008041          268 LAISETGVCYIW  279 (579)
Q Consensus       268 ~~~~~dg~i~iw  279 (579)
                      ++.+.+|.|.-|
T Consensus       290 f~lG~~G~ll~~  301 (302)
T PF14870_consen  290 FVLGQDGVLLRY  301 (302)
T ss_dssp             EEE-STTEEEEE
T ss_pred             EEECCCcEEEEe
Confidence            556788887655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.68  E-value=0.62  Score=49.50  Aligned_cols=184  Identities=13%  Similarity=0.084  Sum_probs=98.6

Q ss_pred             CcEEEEEECCC------eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceee
Q 008041           86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~  153 (579)
                      +.++++|+..+      .+..||+.++.........+...-.++++. +|...++||.|      .++..||...++-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            56777777774      388999998865422222222334444544 45678888888      357788877665221


Q ss_pred             --EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEE-ecCCCEEEEEecCCC-
Q 008041          154 --KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF-SDNGKYVLSSAVGER-  222 (579)
Q Consensus       154 --~~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~~~~d~-  222 (579)
                        .+....... +++. -+|.+.++|+       .++..||..+.+.-..-+ .......... .-+|+..++|| .++ 
T Consensus       364 ~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG-~~~~  439 (571)
T KOG4441|consen  364 VAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGG-GDGS  439 (571)
T ss_pred             cCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcC-cCCC
Confidence              111111111 1121 2678888887       378999988765322111 1112222222 23465556555 343 


Q ss_pred             -----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041          223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  284 (579)
                           ++..||..+++..   .+..+........+..       -++...++|+.||     +|..||..+.
T Consensus       440 ~~~l~sve~YDP~t~~W~---~~~~M~~~R~~~g~a~-------~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWT---LIAPMNTRRSGFGVAV-------LNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ccccceEEEEcCCCCcee---ecCCcccccccceEEE-------ECCEEEEECCccCCCccceEEEEcCCCC
Confidence                 5788888887633   1122222222222222       3667778888776     3566665543

>PHA02713 hypothetical protein; Provisional

Probab=95.65  E-value=0.44  Score=50.65  Aligned_cols=142  Identities=9%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC--------------------
Q 008041           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG--------------------  139 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~--------------------  139 (579)
                      +.+.++|+.++     .+..||+.+++-...-. .........+.  -+|...+.||.++                    
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence            56667777654     38889998876432110 10111111222  2677777776542                    


Q ss_pred             ---cEEEEeCCCCce--eeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCC-Cee--eEEeecCCCCEE
Q 008041          140 ---MVCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSD-HKK--MQKFSGHPGAVR  203 (579)
Q Consensus       140 ---~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~-~~~--~~~~~~h~~~v~  203 (579)
                         .+..||..+.+-  +..+....... +++ .-+|++.+.|+        ..+..||..+ .+-  +..++.......
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence               477788766532  22221111111 222 23577777776        1367899887 432  333333222222


Q ss_pred             EEEEecCCCEEEEEecCCC--eEEEEEcCCCcc
Q 008041          204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVKK  234 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~  234 (579)
                      .+.+  +|+..++|| .|+  .+..||+.+.+-
T Consensus       508 ~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        508 TILH--DNTIMMLHC-YESYMLQDTFNVYTYEW  537 (557)
T ss_pred             eEEE--CCEEEEEee-ecceeehhhcCcccccc
Confidence            2232  567777776 577  677788877653

>PHA02790 Kelch-like protein; Provisional

Probab=95.64  E-value=1.1  Score=46.83  Aligned_cols=179  Identities=5%  Similarity=-0.104  Sum_probs=85.9

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCceee--Ee
Q 008041           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLG--KF  155 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~--~~  155 (579)
                      +.++++|+.++     .+..||+.+++...... .........+  .-+|...+.||.+  ..+..||..+++-..  .+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            45566666543     47789998876532111 1011111122  2366666777653  458888876543211  12


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          156 RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ....... ++ ..-+|++.+.|+     ..+..||.++.+-...  +...... .++ ..-+++..+.||    .+.+||
T Consensus       350 ~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG----~~e~yd  421 (480)
T PHA02790        350 LKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR----NAEFYC  421 (480)
T ss_pred             CCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC----ceEEec
Confidence            1111111 22 223678888877     3577888877643221  1111111 122 223455444443    467888


Q ss_pred             cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  284 (579)
                      +.+++-.   .+..+..+.....++.       -+|+..+.|+.+     ..+..||..+.
T Consensus       422 p~~~~W~---~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        422 ESSNTWT---LIDDPIYPRDNPELII-------VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCCcEe---EcCCCCCCccccEEEE-------ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            8776532   2222222222222222       356666777654     24666665543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=1.9  Score=40.30  Aligned_cols=118  Identities=7%  Similarity=0.112  Sum_probs=79.7

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008041          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK  190 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~  190 (579)
                      .+-...|.++.|+|+.+.+++......-.++=-.+|+.++++.-. -.....|.+..+|++.++--  +.++++.+..+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            345566999999999999888887777777766789998886532 12445677776666555554  788887776542


Q ss_pred             eeE-----E--e--ecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          191 KMQ-----K--F--SGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       191 ~~~-----~--~--~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .+.     .  +  ..+ +...-.++|.|....|+.+= +-+-+.||.....
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~  212 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQS  212 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecC
Confidence            211     1  1  122 45567899999888877764 5566777766543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.44  E-value=0.057  Score=35.39  Aligned_cols=35  Identities=23%  Similarity=0.144  Sum_probs=30.7

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008041          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~  151 (579)
                      ....|.+++|+|....++.++.||.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3467999999999999999999999999998 5554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.43  E-value=0.054  Score=48.25  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~  163 (579)
                      +.-+++|+.+|.|++|+.............-...|- .+.-..++.+.++++.||.|+.|++.-++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            566899999999999998732211111111112222 22333355678889999999999998888777666666 3444


Q ss_pred             EEEEccCCCEEEEE--C--CeEEEEECC
Q 008041          164 CMAVSSDGKMLATA--A--GQLKTFNCS  187 (579)
Q Consensus       164 ~l~~~p~g~~l~~~--~--~~i~vwd~~  187 (579)
                      ....+..++.++.+  +  ..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444555544  2  355556554

>PHA03098 kelch-like protein; Provisional

Probab=95.36  E-value=1.2  Score=47.49  Aligned_cols=143  Identities=13%  Similarity=0.073  Sum_probs=69.3

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceee-
Q 008041           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG-  153 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~-  153 (579)
                      +.+++.|+.+     ..+..||+.+++....-...+...-.+++ .-+++.++.||.+      ..+..||+.+++-.. 
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            5666777655     24788998877643211000110011112 2256666666632      458889987653221 


Q ss_pred             -EeecCCCCeeEEEEccCCCEEEEEC-C---------eEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC
Q 008041          154 -KFRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       154 -~~~~~~~~v~~l~~~p~g~~l~~~~-~---------~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                       .+...... .++ ...++++++.|+ .         .+.+||..+++-...  +.........+.  -+++.++.||..
T Consensus       422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence             11111111 122 223567777776 1         288899887653321  111111111122  256666666532


Q ss_pred             ----CCeEEEEEcCCCc
Q 008041          221 ----ERYIALWRTDGVK  233 (579)
Q Consensus       221 ----d~~i~vwd~~~~~  233 (579)
                          .+.+.+||+.+.+
T Consensus       498 ~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        498 YEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceeEEEeCCCCE
Confidence                2367778877654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.31  E-value=0.047  Score=35.77  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~   39 (579)
                      ++|  -+++|+|...+||.|+.||.|.|+.+ +++.
T Consensus        12 ~~v--~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRV--SCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcE--EEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456  46699999999999999999999998 5543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.074  Score=57.59  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE
Q 008041          128 HGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (579)
Q Consensus       128 ~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~  204 (579)
                      .+..++.|++.|.|-..|+...- +...=..-.++|++++|+.+|+.++.|-  |.|.+||...++.++.+..|..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            45568888899999998875431 1111112345999999999999999887  89999999999999888877777666


Q ss_pred             EEE---ecCCCEEEEEecCCCeEEEEEcC
Q 008041          205 MTF---SDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       205 l~~---s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      +-+   ..++..++++ ..-|  .+|.+.
T Consensus       178 vi~v~~t~~nS~llt~-D~~G--sf~~lv  203 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTS-DTGG--SFWKLV  203 (1206)
T ss_pred             EEEEEEeCCCcEEEEc-cCCC--ceEEEE
Confidence            543   4455555553 2344  366653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.13  E-value=0.48  Score=47.38  Aligned_cols=153  Identities=13%  Similarity=0.118  Sum_probs=94.7

Q ss_pred             EEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      -+..|..++. .|+.-..+.=.|++.|+.+.++..+...  .+.|.|...-.+..                    ...-+
T Consensus       474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt--------------------~eqtl  531 (776)
T COG5167         474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT--------------------DEQTL  531 (776)
T ss_pred             eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC--------------------ccceE
Confidence            3455666555 4555566777799999999888766543  23344431111100                    23347


Q ss_pred             EEECCCeEEEEEccCCe--EE-EEecCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           91 LGTGGGDVLALAVSAGQ--LK-WRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~--~~-~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +|-++..|.-.|++-..  .. .....- ....-.+..-. ...+++.+|..|.|++||--.-+....+.+-...|..+.
T Consensus       532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id  610 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID  610 (776)
T ss_pred             EeecccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence            77788888877876432  11 111100 11112222222 345899999999999999543333444677777999999


Q ss_pred             EccCCCEEEEEC-CeEEEEECC
Q 008041          167 VSSDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       167 ~~p~g~~l~~~~-~~i~vwd~~  187 (579)
                      .+.+|+++++.+ ..+.+-|++
T Consensus       611 vta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         611 VTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eecCCcEEEEeecceEEEEecc
Confidence            999999988877 888888864

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.13  E-value=3.1  Score=41.80  Aligned_cols=202  Identities=18%  Similarity=0.188  Sum_probs=111.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~  163 (579)
                      ...+++++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.++.++.+|..+|+.+..+.... ..+.
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            5668888999999999999999876543221 22333333444665 7788899999999998999988887655 1222


Q ss_pred             EEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCC---CCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccc
Q 008041          164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~~--d~~i~vwd~~~~~~~~~  237 (579)
                      .-.+-.++..++... +.++..|..+++...+...-.   ..+..--...++ .++.+. .  ++.+.-.|...+...-.
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~-~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGS-DGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEec-CCCcceEEEEEccCCcEeee
Confidence            223334555555534 888888888888766543221   111111112233 333333 3  44566666666653310


Q ss_pred             e-eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041          238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      . ........... ....+..... -.+.-+..++.+|.+.-+|..+++.+-....
T Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         225 QKVSQTIGRTAIS-TTPAVDGGPV-YVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeecccCccccc-ccccccCceE-EECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            0 00111111000 0011110000 0123346667788888899999888765543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.12  E-value=2.3  Score=46.34  Aligned_cols=174  Identities=10%  Similarity=0.070  Sum_probs=108.1

Q ss_pred             EEEEEccCCeEEEEecCCCC---CCEEEEEEccC-CCEEEEEe----------CCCcEEEEeCCCCceeeEeecC--CCC
Q 008041           98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS--TKG  161 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~-~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~--~~~  161 (579)
                      ++++|..+-+.+....-...   ..|.++.|..| +.+++.|.          ..|.|.+|.+..++.+.....+  ++.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            67777777665533321112   23555668877 66676664          3477888877764444433322  345


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +.++..- +|+++|.-+..|++|+..+.+.++.-..|..++..+...-.|..++++- --+.+.+...+..+.. ... .
T Consensus       832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD-lm~Sitll~y~~~eg~-f~e-v  907 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD-LMRSITLLQYKGDEGN-FEE-V  907 (1096)
T ss_pred             eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee-ccceEEEEEEeccCCc-eEE-e
Confidence            5555543 6888888889999999999988887778889999999988888888875 4566766665554421 111 2


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .-......+..+.+      -++..++.+..+|.+.+-..
T Consensus       908 ArD~~p~Wmtavei------l~~d~ylgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEI------LDDDTYLGAENSGNLFTVRK  941 (1096)
T ss_pred             ehhhCccceeeEEE------ecCceEEeecccccEEEEEe
Confidence            22233334444444      24455566667777776543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.74  E-value=2.2  Score=37.80  Aligned_cols=172  Identities=13%  Similarity=0.098  Sum_probs=97.2

Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041           16 ALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        16 dg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      +|.++.+.+.  ...|++||+.+|+.+....-..    ...|...         ++             +.+..+-...-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgEG---------it-------------~~gd~~y~LTw  108 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGEG---------IT-------------KLGDYFYQLTW  108 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC----ccccccc---------ee-------------eccceEEEEEe
Confidence            3445555443  4579999999998876543210    1112111         11             01134445566


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--C---CCeeEEEEc
Q 008041           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--T---KGISCMAVS  168 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~---~~v~~l~~~  168 (579)
                      .+|.-..+|..+-+++.++.  ..+.=++++.  |+..++.++...+++.-|.++.....++...  .   ..++.+.|-
T Consensus       109 ~egvaf~~d~~t~~~lg~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V  184 (262)
T COG3823         109 KEGVAFKYDADTLEELGRFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV  184 (262)
T ss_pred             ccceeEEEChHHhhhhcccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence            77888899999887765553  2334455554  5666777666667777777655443332211  1   123344443


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEee------------cCCCCEEEEEEecCCCEEEEEe
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS------------GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~------------~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                       ||...|-.=  ..|...|.++|+.+..+.            .|....+.|++.|++..++..|
T Consensus       185 -dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 -DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             -ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence             555554433  556666677776655442            3445677899999885555544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.74  E-value=3  Score=37.40  Aligned_cols=137  Identities=13%  Similarity=0.199  Sum_probs=82.0

Q ss_pred             cEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEE---eCC--CCceee
Q 008041           87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEI---DPL--TGSLLG  153 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iw---d~~--~~~~~~  153 (579)
                      +.++++...+.|.+|++.+.+  ...++.  --+.|..+.++..|+++++-=.+      ..+|+|   ...  ..++++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            667777888899999998433  344442  34789999999999999986322      245654   322  112222


Q ss_pred             -Eeec---------------------CCCCeeEEEEcc-CCCEEEEECCeEEEEECCCCee------eEEee-----cCC
Q 008041          154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK------MQKFS-----GHP  199 (579)
Q Consensus       154 -~~~~---------------------~~~~v~~l~~~p-~g~~l~~~~~~i~vwd~~~~~~------~~~~~-----~h~  199 (579)
                       .+-+                     -..++.|++..| .|++++...+.+.+|.+.....      +..|.     -|.
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence             1111                     123667888887 5666666669999998764322      11121     111


Q ss_pred             -CCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          200 -GAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       200 -~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                       -....+++.  +.|++..+  +..+++..+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence             124455555  45777664  666777654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.73  E-value=1.3  Score=45.48  Aligned_cols=146  Identities=13%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             CCEEEEEEccCCCE-EEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC-----CEEEEEC-CeEEEEECC-
Q 008041          118 GGVSAISFATHGSC-IYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG-----KMLATAA-GQLKTFNCS-  187 (579)
Q Consensus       118 ~~V~~l~~~~~~~~-l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g-----~~l~~~~-~~i~vwd~~-  187 (579)
                      -+|.+++|. ||+. +++.-  .+|.+++=|   .+.+..|    ..|..+.|.|-+     .+||+-. ..|.||.+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478899996 5665 44432  233333322   2233333    367889999853     4666666 799999886 


Q ss_pred             ----CCeeeEEeecC---CCC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCC
Q 008041          188 ----DHKKMQKFSGH---PGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       188 ----~~~~~~~~~~h---~~~--v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                          .++.+..-..+   .-+  -..+.|+|....|++-...| .-.+++++.....    +...-.....+.|.+|.  
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~sr----VkaDi~~~G~IhCACWT--  164 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSR----VKADIKTSGLIHCACWT--  164 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCce----EEEeccCCceEEEEEec--
Confidence                23333332221   112  24678999988887765333 3344565554322    22223556678999998  


Q ss_pred             cccCCCcEEEEEEc-CCeEEEEEc
Q 008041          259 GVDDAGLYVLAISE-TGVCYIWYG  281 (579)
Q Consensus       259 ~~~~~~~~l~~~~~-dg~i~iwd~  281 (579)
                         +||+.|+++-. .=.-++||-
T Consensus       165 ---~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  165 ---KDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ---CcCCEEEEEeCCeEEEEEecC
Confidence               89998877744 336788883

>PHA02790 Kelch-like protein; Provisional

Probab=94.69  E-value=2.8  Score=43.75  Aligned_cols=140  Identities=9%  Similarity=-0.051  Sum_probs=66.9

Q ss_pred             CcEEEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEE-EEEccCCCEEEEEeCCC---cEEEEeCCCCceee--Eeec
Q 008041           86 SSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADG---MVCEIDPLTGSLLG--KFRA  157 (579)
Q Consensus        86 ~~~l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~--~~~~  157 (579)
                      +.+.++|+.++  .+..||+.+++....  ..-..+... ....-+|+..+.||.++   .+..||..+++-..  .+..
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~--~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNM--PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEEC--CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            55566666533  488899877654311  111111111 11122677777777543   47788876553221  1111


Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCC-----CeEEEEEcC
Q 008041          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYIALWRTD  230 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-----~~i~vwd~~  230 (579)
                      .... .+++ .-+|++.+.| |.+.+||.++++-.  ..+....... +++. -+|+..+.||. +     ..+..||..
T Consensus       397 ~r~~-~~~~-~~~~~IYv~G-G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~-~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        397 PHYK-SCAL-VFGRRLFLVG-RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGF-YRGSYIDTIEVYNNR  470 (480)
T ss_pred             cccc-ceEE-EECCEEEEEC-CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCc-CCCcccceEEEEECC
Confidence            1111 1222 2345555554 56778888776543  2222111111 2222 35666666653 3     346667766


Q ss_pred             CCc
Q 008041          231 GVK  233 (579)
Q Consensus       231 ~~~  233 (579)
                      +++
T Consensus       471 ~~~  473 (480)
T PHA02790        471 TYS  473 (480)
T ss_pred             CCe
Confidence            654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.35  E-value=4.7  Score=37.97  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEe-CCCCceee-EeecC--CCCeeEEEEccCCCEEEEEC-----CeEEEEECC--
Q 008041          119 GVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS--  187 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~--  187 (579)
                      .++...|++++...+....+...+++. ..++.... .....  ...|.++.++|||..++...     +.|++--+.  
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            678889999977666655566666663 33343222 12211  12899999999999887654     567666443  


Q ss_pred             -CC--e----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE-EEcCC
Q 008041          188 -DH--K----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDG  231 (579)
Q Consensus       188 -~~--~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v-wd~~~  231 (579)
                       .+  .    .+.........+..+.|.+++.+++.+...+..+.. .....
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence             22  1    112222334678999999999887777655554444 34433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=0.23  Score=54.36  Aligned_cols=153  Identities=7%  Similarity=-0.022  Sum_probs=94.3

Q ss_pred             eEEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041            9 ILTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 l~~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      +.+...+|+...++...  +-.|..||+++-....-.+..  +   +.++..  .-....-..|+.|.|.-        .
T Consensus       104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~--p---l~~s~t--s~ek~vf~~~~~wnP~v--------p  168 (1405)
T KOG3630|consen  104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV--P---LKNSAT--SFEKPVFQLKNVWNPLV--------P  168 (1405)
T ss_pred             eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc--c---cccccc--hhccccccccccccCCc--------c
Confidence            44467778776655443  346788898754322111000  0   000000  00012244578888765        3


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v  162 (579)
                      ...+++..|+.|.+..+.......... .....+++++|+|.|+.++.|-..|++.-|-. ..+....+.+.    ...|
T Consensus       169 ~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrv  246 (1405)
T KOG3630|consen  169 LNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRV  246 (1405)
T ss_pred             chhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcce
Confidence            446888899999888776443322221 34567899999999999999999999999875 45544444432    3589


Q ss_pred             eEEEEccCCCEEEEEC
Q 008041          163 SCMAVSSDGKMLATAA  178 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~  178 (579)
                      .+++|-....++++-+
T Consensus       247 l~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  247 LSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             eEEEEecceeEEEEec
Confidence            9999987776766654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.30  E-value=0.045  Score=57.96  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=74.5

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE-----------EccCCCEEEEE
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSA  135 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~  135 (579)
                      ...-+.|.+.-..      ..++..+..+|.|++.+..+...  .++.+|...++.++           .+|||..|+.+
T Consensus       182 ~~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a  253 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA  253 (1283)
T ss_pred             Ccceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence            3356677765543      45567777888888776655433  33455776655543           57999999999


Q ss_pred             eCCCcEEEEeCC-----CCceeeEeecCCC-CeeEEEEccCC---------CEEEEEC---CeEEEEECCCCeee
Q 008041          136 GADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM  192 (579)
Q Consensus       136 ~~d~~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~~p~g---------~~l~~~~---~~i~vwd~~~~~~~  192 (579)
                      +.||.++.|.+.     ..++...++.|.+ +-.|.-++.+.         .+++++.   ..+++|.....+|+
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            999998888753     2345666777774 33333344322         2344444   47888887766665

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.26  E-value=5.5  Score=38.39  Aligned_cols=138  Identities=12%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceeeE----eecCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK----FRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~~----~~~~~~  160 (579)
                      +.+++++....-..-||.-...-...- ..-...|..+.|.|++...+.+ ..|.|+.=+. ...+....    +....-
T Consensus       156 G~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  156 GRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             S-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred             CcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence            555555544444556776543222111 2345789999999998765544 8888888772 22222111    111222


Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .+..++|.+++...++|++-..+...+.|+.-..-.   .-......+.|.++.+-++.+  .+|.|--|
T Consensus       234 ~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~  301 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY  301 (302)
T ss_dssp             -EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred             eeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence            578999999999999888333445566666544432   234567889998776666664  58877655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.23  E-value=2.8  Score=45.58  Aligned_cols=35  Identities=9%  Similarity=0.009  Sum_probs=28.8

Q ss_pred             CCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 008041          115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus       115 ~h~~~V~~l~~~~~---~~~l~s~~~d~~v~iwd~~~~  149 (579)
                      .+...|..+.|+|.   +.+|+.=..|+++++||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            35567999999995   578888889999999998654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.15  E-value=5.1  Score=37.69  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             CcEEEEEECCCeEEEEE-ccCCeEEE-Eec-CCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCC---CC------c
Q 008041           86 SSLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------S  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd-~~~~~~~~-~~~-~~h~~~V~~l~~~~~~~~l~s~~---~d~~v~iwd~~---~~------~  150 (579)
                      +...++...+....++. ...+.... ... ..-...|+++.++|||..++...   .++.|.+--+.   .+      .
T Consensus        77 g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~  156 (253)
T PF10647_consen   77 GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG  156 (253)
T ss_pred             CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence            34445555555555553 33333221 111 11112899999999999977655   35677776443   22      1


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008041          151 LLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      ...........+..++|.+++.+++.+.
T Consensus       157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  157 PRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ceEecccccCcceeeeecCCCEEEEEeC
Confidence            1122222345889999999999888876

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=93.95  E-value=12  Score=41.10  Aligned_cols=98  Identities=8%  Similarity=0.023  Sum_probs=60.1

Q ss_pred             CcEEEEEEC-CCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC--cee
Q 008041           86 SSLLVLGTG-GGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL  152 (579)
Q Consensus        86 ~~~l~~~~~-~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~--~~~  152 (579)
                      +++|+.+.. +|.    |++.|+.+|+.+.....+   .-..++|.+|++.|+.+..+      ..|+.+++.++  +..
T Consensus       138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~  214 (686)
T PRK10115        138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE  214 (686)
T ss_pred             CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence            555655543 343    999999888743333221   12569999999876665432      36888888887  444


Q ss_pred             eEeecCCCCee-EEEEccCCCEEEEEC-----CeEEEEEC
Q 008041          153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC  186 (579)
Q Consensus       153 ~~~~~~~~~v~-~l~~~p~g~~l~~~~-----~~i~vwd~  186 (579)
                      ..+........ .+..+.++++++...     +.+.+|+.
T Consensus       215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            45554334333 333444888766544     57888884

>PRK13684 Ycf48-like protein; Provisional

Probab=93.90  E-value=7.2  Score=38.48  Aligned_cols=151  Identities=17%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEE-eCCCCceeeEee-cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008041          117 PGGVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iw-d~~~~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~  193 (579)
                      ...+.++.+.|++.+++++ ..|.+..- | ..++...... .....++++.+.|+++.++++. |.+++=..+.+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence            4568899999988666554 56655432 2 2223222222 2345889999999999888887 666432344444322


Q ss_pred             Eeec----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee-eecCceeEEeEEecCCcccCCCcEEE
Q 008041          194 KFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       194 ~~~~----h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                      ....    ....+..+.+.|++..+++ + .+|.+. .....++.-  ..... ...+......++.      .++ ..+
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~~-~~~  317 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DPE-KGF  317 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CCC-ceE
Confidence            2211    1234778899998876655 4 477554 444444321  11110 0112233344443      233 445


Q ss_pred             EEEcCCeEEEEEc
Q 008041          269 AISETGVCYIWYG  281 (579)
Q Consensus       269 ~~~~dg~i~iwd~  281 (579)
                      ..+..|.|.-|+-
T Consensus       318 ~~G~~G~il~~~~  330 (334)
T PRK13684        318 VLGQRGVLLRYVG  330 (334)
T ss_pred             EECCCceEEEecC
Confidence            5667788887753

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=93.81  E-value=0.13  Score=43.67  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=69.6

Q ss_pred             hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHhh--hhhhhh
Q 008041          492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL--FASAFT  569 (579)
Q Consensus       492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~~~l~~l~~~~~~r~--~~~~~~  569 (579)
                      ..++..+..-....+.++|+|+. +.-.+|+....++.++..+|-.++..+-..|.+...+..|+..+.+-+  +..+..
T Consensus        62 ~~L~~AL~~Rde~~L~piL~Fl~-k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~  140 (148)
T PF09384_consen   62 GALRAALAGRDEESLEPILKFLI-KNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKELLE  140 (148)
T ss_pred             cHHHHHHHhCCHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47778888899999999999999 555899999999999999999999999998888899999999988777  555554


Q ss_pred             hceeeeE
Q 008041          570 CFILLYL  576 (579)
Q Consensus       570 ~~~~~~~  576 (579)
                      ..|-|.|
T Consensus       141 l~G~ld~  147 (148)
T PF09384_consen  141 LQGMLDM  147 (148)
T ss_pred             HHhHHhh
Confidence            4444433

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.62  E-value=3.9  Score=42.10  Aligned_cols=116  Identities=9%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             CCCCEEEEEEccC----CCEEEEEeCCCcEEEEeCC-----CCceeeEeecCCC-----CeeEEEEccCCCEEEEEC-Ce
Q 008041          116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRASTK-----GISCMAVSSDGKMLATAA-GQ  180 (579)
Q Consensus       116 h~~~V~~l~~~~~----~~~l~s~~~d~~v~iwd~~-----~~~~~~~~~~~~~-----~v~~l~~~p~g~~l~~~~-~~  180 (579)
                      .-..|.++.|.|-    -..+++.-....|.+|.+.     .++.+.....+-.     -...+.|+|....|++-. ..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            3456899999984    3356666788899999875     2233322222111     224578999988887755 44


Q ss_pred             E-EEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          181 L-KTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       181 i-~vwd~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      + .+++++.  .+....+. ..+.|.|.+|.+||+.|+.+-...=.-++||-...
T Consensus       135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            4 4445543  33334443 56789999999999988876533345688886544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.33  E-value=3.6  Score=43.63  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=69.3

Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe--cCCCEEEEEecCCCeEEEEEcCC--
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS--DNGKYVLSSAVGERYIALWRTDG--  231 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s--~~~~~l~s~~~~d~~i~vwd~~~--  231 (579)
                      -..+.-+.-+.-++..++-.  .++.|||.+.+....+-. ...+.|..+.|.  |+|+.+++.| -.+.|.+|.-..  
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYD  107 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchh
Confidence            33555566666555555544  689999999887433222 346889999885  7899998888 588898885321  


Q ss_pred             --Cccccceeeee---eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          232 --VKKQSASCVLA---MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                        ........+..   ..+....+....|-     ++|..++++  .+.+.|||
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence              11111112222   22333445555554     677765543  46888887

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK10115 protease 2; Provisional

Probab=93.26  E-value=15  Score=40.24  Aligned_cols=188  Identities=8%  Similarity=0.046  Sum_probs=94.2

Q ss_pred             EEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041           11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fspdg~~lasg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      +.+||||++||.+..     ...|++-|+.+|..+...-                   .... ..+.|.+.+        
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------------------~~~~-~~~~w~~D~--------  183 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------------------DNVE-PSFVWANDS--------  183 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------------------cCcc-eEEEEeeCC--------
Confidence            378999999987643     2357888888775321100                   0111 236776542        


Q ss_pred             CcEEEEEECC-----CeEEEEEccCCe--EEEEecCCCCCCEE-EEEEccCCCEEEEEe---CCCcEEEEeC--CCCcee
Q 008041           86 SSLLVLGTGG-----GDVLALAVSAGQ--LKWRLSDCHPGGVS-AISFATHGSCIYSAG---ADGMVCEIDP--LTGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~--~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~---~d~~v~iwd~--~~~~~~  152 (579)
                      ..++++....     ..|+.+++.++.  -. .+..+...... ....+.++++++..+   .++.+.+++.  ..+...
T Consensus       184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~  262 (686)
T PRK10115        184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF  262 (686)
T ss_pred             CEEEEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence            2333443322     358889998872  22 12222223333 333444888755443   3457888884  234432


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecC-C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h-~-~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      ..+....+....+. +..+.+++...     ..|...++........+..+ . ..+..+.+.  +++|+.....++.-+
T Consensus       263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~  339 (686)
T PRK10115        263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS  339 (686)
T ss_pred             EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence            22222222222222 33344444433     24544555522222334344 3 367777777  345555554677666


Q ss_pred             EEEcC
Q 008041          226 LWRTD  230 (579)
Q Consensus       226 vwd~~  230 (579)
                      ++-+.
T Consensus       340 l~~~~  344 (686)
T PRK10115        340 LRQIN  344 (686)
T ss_pred             EEEEc
Confidence            65544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.25  E-value=3.8  Score=33.67  Aligned_cols=108  Identities=16%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCC--------ceeeEeecCCCCeeEEEEcc-----CCCEEEEEC-CeEEEEECC
Q 008041          122 AISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       122 ~l~~~~~~~~l~s~~~d~~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p-----~g~~l~~~~-~~i~vwd~~  187 (579)
                      .-.|......|++++.-|.|.+++....        ..+..+. -...|++++--|     +...|+.|+ ..+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            3456555667888888899999986533        2333343 345777776544     456888888 899999998


Q ss_pred             CCeeeEEeecCCCCEEEEEEec----CCCEEEEEecCCCeEEEEEcCCCc
Q 008041          188 DHKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       188 ~~~~~~~~~~h~~~v~~l~~s~----~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ...-+..- .-...|+++.+-.    +...++++  .+..|.-||....+
T Consensus        82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivG--Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   82 NNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVG--GNCSIQGFDYEGNE  128 (136)
T ss_pred             cCchhhhh-hCccceeEEEEEecCCCCCcEEEEC--ceEEEEEeCCCCcE
Confidence            87654322 2346677776632    23445544  36777777766543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.14  E-value=3.6  Score=41.22  Aligned_cols=59  Identities=15%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             CCEEEEEEccCCCEEEEEeCC-------------------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEE
Q 008041          118 GGVSAISFATHGSCIYSAGAD-------------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA  177 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d-------------------~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~  177 (579)
                      .....+.|.|||.+.++.+..                   |.|.-+|...++. ..+...-.....++|+|+|+++++-
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence            447889999999876554421                   3344444433332 2222111234567777777666543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.04  E-value=3.4  Score=44.98  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041          119 GVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~  146 (579)
                      .|..+.++|+|.+++..|..| |.+..+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            578889999999988888766 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.76  E-value=5.7  Score=39.84  Aligned_cols=100  Identities=14%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeeEeecCCCCeeEEEEccCCCEEEEECCeE
Q 008041          118 GGVSAISFATHGSCIYSAG-----------ADG-MVCEIDPLT--GS--LLGKFRASTKGISCMAVSSDGKMLATAAGQL  181 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~-----------~d~-~v~iwd~~~--~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i  181 (579)
                      ....+++|.++|+.+++..           ..+ .|.+++-.+  |+  ....|...-.....+++.++| ++++....|
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            4567889999998766642           223 777776543  33  233444444466889999998 655555666


Q ss_pred             EEE-ECCC-------Ceee-EEeec----CCCCEEEEEEecCCCEEEEEe
Q 008041          182 KTF-NCSD-------HKKM-QKFSG----HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       182 ~vw-d~~~-------~~~~-~~~~~----h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ..| |...       .+.+ ..+..    +......+.|.|||.+.++.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            655 4432       1122 22322    134477899999998766655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.56  E-value=4.2  Score=40.44  Aligned_cols=144  Identities=9%  Similarity=0.126  Sum_probs=90.2

Q ss_pred             EEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCCCC
Q 008041           88 LLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRASTKG  161 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~  161 (579)
                      ..+.+..+|.+.=|-+..  ......+.....++|.++.|++|.+.++.--.|+.|.+++....+.    ..+.+.....
T Consensus        35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~  114 (657)
T KOG2377|consen   35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN  114 (657)
T ss_pred             ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence            345555556555555543  2233233334557999999999999999999999999999743322    1223333446


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCC
Q 008041          162 ISCMAVSSDGKMLATAAGQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG  231 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~  231 (579)
                      |....|+.+....+....-+.+|.+... +.++..+.|...|..-.|+++.+.++-+++ ..+++.=+.+++
T Consensus       115 IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  115 ILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             eEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            8889998764444444455666665432 345556778888999999998775544432 334444444443

>PLN02193 nitrile-specifier protein

Probab=92.43  E-value=15  Score=38.17  Aligned_cols=144  Identities=12%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCeEEEEecCC-CCC--CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008041           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~-h~~--~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~  150 (579)
                      +.+++.|..+       ..+.+||+.+.+-......+ ...  ........-++..++.|+.+     ..+.+||+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            4555666542       24788888876643211111 001  11111112245556666654     358889987654


Q ss_pred             eeeE--eec-CC-CCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEee-----cCCCCEEEEEEecCCCEE
Q 008041          151 LLGK--FRA-ST-KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       151 ~~~~--~~~-~~-~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l  214 (579)
                      -...  ... .. ..-.+++. -++++++.|+       ..+..||+.+.+-...-.     ..... ..+.. -+++.+
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~gkiy  332 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQGKVW  332 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECCcEE
Confidence            2221  100 11 11122222 3566677665       247788887765321100     00111 11222 356666


Q ss_pred             EEEecCC----CeEEEEEcCCCc
Q 008041          215 LSSAVGE----RYIALWRTDGVK  233 (579)
Q Consensus       215 ~s~~~~d----~~i~vwd~~~~~  233 (579)
                      +.+| .+    ..+.+||+.+.+
T Consensus       333 viGG-~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        333 VVYG-FNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EEEC-CCCCccCceEEEECCCCE
Confidence            6665 34    458889988765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.34  E-value=2.4  Score=46.95  Aligned_cols=126  Identities=11%  Similarity=-0.024  Sum_probs=78.5

Q ss_pred             EEECCC-eEEEEEccCCeEE----EEec------CCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEeec
Q 008041           91 LGTGGG-DVLALAVSAGQLK----WRLS------DCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKFRA  157 (579)
Q Consensus        91 ~~~~~g-~i~iwd~~~~~~~----~~~~------~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~-~~~~~~~  157 (579)
                      +-+.+| .|..||+.+-..-    ...+      .....-+.++.|+|.-.. .+.+..|+.|++..+..-. .+..+. 
T Consensus       118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-  196 (1405)
T KOG3630|consen  118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-  196 (1405)
T ss_pred             EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-
Confidence            333334 4899999753221    1111      112234567888885443 5667789989888765332 222232 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEe
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~~  218 (579)
                      .....+|++|+|.|+.+++|.  |++.-|-. +.+....+++.    ...|.++.|-..-.++++-+
T Consensus       197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            345789999999999999998  78877754 33333333221    36789999987766766543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.17  E-value=0.46  Score=30.21  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=25.0

Q ss_pred             CcccceEEEEccCC---CEEEEEeCCCcEEEEECCCC
Q 008041            4 SNIRDILTSFSPAL---DYFAICSGDARIKIWDTLKG   37 (579)
Q Consensus         4 ~~V~~l~~~fspdg---~~lasg~~dg~i~vwd~~~~   37 (579)
                      ++||++  .|||+.   .+|+..-.-|.|.|+|++++
T Consensus         1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            467555  999854   58888777899999999854

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.85  E-value=0.48  Score=50.63  Aligned_cols=137  Identities=15%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             CeEEEEEcc--CCeEEE----EecCCCCCCEEEEEE---ccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE-
Q 008041           96 GDVLALAVS--AGQLKW----RLSDCHPGGVSAISF---ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM-  165 (579)
Q Consensus        96 g~i~iwd~~--~~~~~~----~~~~~h~~~V~~l~~---~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l-  165 (579)
                      |...+|++.  .|+...    +....-...+.-+.|   -++.-++..+-.++.+++.+..+... ..|.+|..++..+ 
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            667888876  344322    222222233344444   44666677777788888876543322 3455565544433 


Q ss_pred             ----------EEccCCCEEEEEC--C-----eEEEEECCCCeeeEEeecCC-CCEEEEEEecCC---------CEEEEEe
Q 008041          166 ----------AVSSDGKMLATAA--G-----QLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNG---------KYVLSSA  218 (579)
Q Consensus       166 ----------~~~p~g~~l~~~~--~-----~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~---------~~l~s~~  218 (579)
                                .++|||+.++.+.  |     .|+|.+...-+++...+.|. .+-.|.-|+...         .++++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt  311 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT  311 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence                      3689999999876  5     45555555566677777776 443343344321         2456666


Q ss_pred             cCCCeEEEEEcCCCc
Q 008041          219 VGERYIALWRTDGVK  233 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~  233 (579)
                      ..++.+++|.....+
T Consensus       312 d~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  312 DVNREEKFWAEAPWQ  326 (1283)
T ss_pred             cCCcceeEeeccchh
Confidence            566778999877665

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.85  E-value=15  Score=36.59  Aligned_cols=192  Identities=15%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC
Q 008041           15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        15 pdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      |...+++....++=+.+||++ |+.++.+.........+.+.-                 +...+      ..-|++++.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf-----------------~l~g~------~vDlavas~  121 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGF-----------------PLNGK------TVDLAVASD  121 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEE-----------------EETTE------EEEEEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecce-----------------ecCCc------eEEEEEEec
Confidence            344567777778889999986 666565532110000111110                 00100      111444443


Q ss_pred             -C---CeEEEEEcc--CCeEEEEecC-C-----CCCCEEEEEEc--c-CCC-EEEEEeCCCcEEEEeCC---CC----ce
Q 008041           95 -G---GDVLALAVS--AGQLKWRLSD-C-----HPGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SL  151 (579)
Q Consensus        95 -~---g~i~iwd~~--~~~~~~~~~~-~-----h~~~V~~l~~~--~-~~~-~l~s~~~d~~v~iwd~~---~~----~~  151 (579)
                       +   ..|++|.+.  ++.+. .+.. .     -...+.++|+.  | +|. +++....+|.+..|-+.   .+    +.
T Consensus       122 R~~g~n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l  200 (381)
T PF02333_consen  122 RSDGRNSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL  200 (381)
T ss_dssp             -CCCT-EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred             CcCCCCeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence             2   358888775  44432 2211 1     11347788874  3 455 46667788988888764   33    45


Q ss_pred             eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-----CeeeEEeec--CCCCEEEEEEec--CC-CEEEEEec
Q 008041          152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAV  219 (579)
Q Consensus       152 ~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-----~~~~~~~~~--h~~~v~~l~~s~--~~-~~l~s~~~  219 (579)
                      ++.|.. ...+..+........|..+.  .-|.-|+.+.     ++.+....+  ....|-.|+...  ++ .||++++.
T Consensus       201 VR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  201 VREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             EEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             EEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence            777775 44788999998888888887  4566666652     233333322  346678887754  33 37888887


Q ss_pred             CCCeEEEEEcCCC
Q 008041          220 GERYIALWRTDGV  232 (579)
Q Consensus       220 ~d~~i~vwd~~~~  232 (579)
                      .+++..+|+....
T Consensus       280 G~~sf~Vy~r~~~  292 (381)
T PF02333_consen  280 GDNSFAVYDREGP  292 (381)
T ss_dssp             GGTEEEEEESSTT
T ss_pred             CCCeEEEEecCCC
Confidence            8899999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.77  E-value=14  Score=36.34  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~   39 (579)
                      ..|+|.|||++|++ ...|.|++++ ..+..
T Consensus         5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~   33 (331)
T PF07995_consen    5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL   33 (331)
T ss_dssp             EEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred             eEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence            35699999987765 5599999999 55554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.70  E-value=1.1  Score=41.12  Aligned_cols=28  Identities=14%  Similarity=0.321  Sum_probs=23.6

Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041          125 FATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus       125 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~  152 (579)
                      +..+++++++.+.+|.+++||+.+++.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            3457889999999999999999988664

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.62  E-value=1.7  Score=43.68  Aligned_cols=79  Identities=16%  Similarity=0.238  Sum_probs=56.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC-eeEEEEccC-----------------CCEEEEEC--
Q 008041          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-ISCMAVSSD-----------------GKMLATAA--  178 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~p~-----------------g~~l~~~~--  178 (579)
                      .+.++..+|++++.++...-|+|.++|+.++..++.+++..+. +.=+.....                 ..+|+.-.  
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            4788999999998888888899999999999999998876552 111111111                 11233322  


Q ss_pred             -CeEEEEECCCCeeeEEeec
Q 008041          179 -GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       179 -~~i~vwd~~~~~~~~~~~~  197 (579)
                       |.|.||.+++|..+..+..
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEe
Confidence             8999999999988877653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.53  E-value=3.2  Score=41.80  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=88.1

Q ss_pred             CcEEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEeCCC-CceeeE--
Q 008041           86 SSLLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLT-GSLLGK--  154 (579)
Q Consensus        86 ~~~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~~~d~~v~iwd~~~-~~~~~~--  154 (579)
                      .++|+. |..-..++-.|+..|+.+.... -|...  -+.|.|+.+       .-+.|-++..|.-.|.+- |..+..  
T Consensus       479 ssli~~dg~~~~kLykmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         479 SSLIYLDGGERDKLYKMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             cceEEecCCCcccceeeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            334433 4444568889999999886663 35443  566777432       234455677777777653 322222  


Q ss_pred             eec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          155 FRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       155 ~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      ++.  ......|..-..+| ++|+++  |.|++||--..+...-+++-...|..+..+.+|+++++.|  ..++-+-|+.
T Consensus       556 sKdY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            111  12234444444444 777777  9999999543333344577778899999999999998886  5678888876


Q ss_pred             CC
Q 008041          231 GV  232 (579)
Q Consensus       231 ~~  232 (579)
                      -.
T Consensus       633 ik  634 (776)
T COG5167         633 IK  634 (776)
T ss_pred             cc
Confidence            43

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.51  E-value=2.1  Score=39.66  Aligned_cols=142  Identities=14%  Similarity=0.129  Sum_probs=73.5

Q ss_pred             EEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCC-C-ee-eEEee---cCCCCEEEEEEecC
Q 008041          142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSD-H-KK-MQKFS---GHPGAVRFMTFSDN  210 (579)
Q Consensus       142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~-~-~~-~~~~~---~h~~~v~~l~~s~~  210 (579)
                      .+||+.+++....-....-.+.+-.+.|||+++.+|+     ..+++++..+ . .+ .....   .....--+...-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            4788887754332211222444556789999999988     3688888654 1 11 11110   01112223444579


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCcccccee-eee-e--ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          211 GKYVLSSAVGERYIALWRTDGVKKQSASC-VLA-M--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      |+.|+.+|...-+...|............ ... .  .......-.++.-     |+|+.++.+..++  .|||..+.+.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~s--~i~d~~~n~v  201 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRGS--IIYDYKTNTV  201 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCCc--EEEeCCCCeE
Confidence            99999988644445555542221110000 000 0  0111222233333     8999998887654  4567777655


Q ss_pred             eccc
Q 008041          287 LRNT  290 (579)
Q Consensus       287 ~~~~  290 (579)
                      ++.+
T Consensus       202 ~~~l  205 (243)
T PF07250_consen  202 VRTL  205 (243)
T ss_pred             EeeC
Confidence            4443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.45  E-value=15  Score=36.00  Aligned_cols=103  Identities=12%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCce---eeEeecCCCCe--eEEEEccCCCEEEEEC-------CeEEEEECCCCe
Q 008041          128 HGSCIYSAGAD-----GMVCEIDPLTGSL---LGKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK  190 (579)
Q Consensus       128 ~~~~l~s~~~d-----~~v~iwd~~~~~~---~~~~~~~~~~v--~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~  190 (579)
                      ++..++.|+.+     ..+..+|+.+.+-   ...+..-..+.  .+++. -++++++.|+       ..+..||..+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            55566666654     3577778766542   11221111111  12222 2567777766       368889988764


Q ss_pred             ee--EEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCc
Q 008041          191 KM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK  233 (579)
Q Consensus       191 ~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~  233 (579)
                      -.  ..+... ..........+++..+.+| .++    .+.+||+.+.+
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence            32  222211 1112222334566666665 343    25678887764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.37  E-value=6.5  Score=42.22  Aligned_cols=101  Identities=15%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             CcEEEEEECCCeEEEEEccC-------C----eE-E------EEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEe
Q 008041           86 SSLLVLGTGGGDVLALAVSA-------G----QL-K------WRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID  145 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~-------~----~~-~------~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~v~iwd  145 (579)
                      ...|++|..||.|.+|.+.+       .    +. .      ..+.......+++++++  ...++|++++....|.+|-
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            67899999999999997742       1    00 0      01111234578999998  7777888888778888875


Q ss_pred             CCCC--ce-eeEeecCCCCeeEEEEccCC-----C-EEEEEC--CeEEEEEC
Q 008041          146 PLTG--SL-LGKFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC  186 (579)
Q Consensus       146 ~~~~--~~-~~~~~~~~~~v~~l~~~p~g-----~-~l~~~~--~~i~vwd~  186 (579)
                      +...  +. ...-..+..-|-+|+|-++.     . .+++++  |.+.+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4431  11 11111245578889987643     2 566666  88888776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN02153 epithiospecifier protein

Probab=90.77  E-value=18  Score=35.74  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCC
Q 008041           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~  148 (579)
                      +.++++|+.+       ..+.+||+.+.+-......+...     ....+.+  +++.++.|+.+     ..+.+||+.+
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence            4555656542       35889998887643211111100     1222232  45566666643     3578889876


Q ss_pred             Ccee--eEeec---CCCCeeEEEEccCCCEEEEEC-C------------eEEEEECCCCee
Q 008041          149 GSLL--GKFRA---STKGISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKK  191 (579)
Q Consensus       149 ~~~~--~~~~~---~~~~v~~l~~~p~g~~l~~~~-~------------~i~vwd~~~~~~  191 (579)
                      .+-.  ..+..   ........+..-++++++.|+ .            .+.+||..+.+-
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            5322  11110   111111122223566777666 1            367888877643

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.27  E-value=18  Score=34.79  Aligned_cols=135  Identities=19%  Similarity=0.247  Sum_probs=79.9

Q ss_pred             eEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCC-----CEEEEE-eCCCcEEEEeCCCCceeeEeecC-------
Q 008041           97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSA-GADGMVCEIDPLTGSLLGKFRAS-------  158 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~-----~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~-------  158 (579)
                      +|.+||+.+++.+.++.-.     ..+....+.+....     .+++.+ +..+-+.++|+.+++..+....+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5788999998876655311     24567888886622     243333 34467999999988765443321       


Q ss_pred             ------------CCCeeEEEEcc---CCCEEEEEC-CeEEEEECCCC--------------eeeEEeecCCCCEEEEEEe
Q 008041          159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSDH--------------KKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       159 ------------~~~v~~l~~~p---~g~~l~~~~-~~i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~s  208 (579)
                                  ...+..++.+|   +|+.|.-.. ..-++|.+.+.              +.+..+....+....++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                        12366677765   666776665 44444444321              1122222112466778999


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCC
Q 008041          209 DNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       209 ~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ++|..+++-- ..+.|..|+..+.
T Consensus       195 ~~G~ly~~~~-~~~aI~~w~~~~~  217 (287)
T PF03022_consen  195 PNGNLYFTDV-EQNAIGCWDPDGP  217 (287)
T ss_dssp             TTTEEEEEEC-CCTEEEEEETTTS
T ss_pred             CCCcEEEecC-CCCeEEEEeCCCC
Confidence            9988777665 7889999998874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.18  E-value=16  Score=34.09  Aligned_cols=133  Identities=12%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             eEEEEEccCCeEEE-EecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKW-RLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~-~~~~~h-~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~  173 (579)
                      .|.-.|.++.+... .+...| ........|.+.|+.-+++. .|.-=-.|.. ...+.+|....+ ..+.|+..|||..
T Consensus       125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv  202 (353)
T COG4257         125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV  202 (353)
T ss_pred             eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCcE
Confidence            45555665555432 111222 35678889999998877774 2221112221 223444544433 6688999999998


Q ss_pred             EEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          174 LATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       174 l~~~~--~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      -++.-  +.|-..|..++. -..+.   .....-..+--+|.|+.-++.. ..+.+..+|.....
T Consensus       203 wyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~s  265 (353)
T COG4257         203 WYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTS  265 (353)
T ss_pred             EEEeccccceEEcccccCC-cceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccccc
Confidence            87744  677777766652 11221   2123344555667787766654 57788888877654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.04  E-value=18  Score=34.44  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCce-----eeEeecC-CC-CeeEEEEc--cCCCEEEEEC---CeEEEEECCCCeeeE--Eee
Q 008041          131 CIYSAGADGMVCEIDPLTGSL-----LGKFRAS-TK-GISCMAVS--SDGKMLATAA---GQLKTFNCSDHKKMQ--KFS  196 (579)
Q Consensus       131 ~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~-~~-~v~~l~~~--p~g~~l~~~~---~~i~vwd~~~~~~~~--~~~  196 (579)
                      .|+.+++||+|.-|...-+..     +..+... .+ -...+++.  ..+.+|..+.   ++|.+||-.-.+...  .|.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            367888999999998543222     1222211 12 23345554  3467888887   899999864332210  011


Q ss_pred             -----cCCCC--E---------EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC---ceeEEeEEecC
Q 008041          197 -----GHPGA--V---------RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDN  257 (579)
Q Consensus       197 -----~h~~~--v---------~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  257 (579)
                           ....+  |         +-..-.++++.=+.+. .-|.|.+||+...-..      .+.+.   ...+. +...+
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~~------r~as~g~LNaPWG-~a~AP  253 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLLR------RVASSGRLNAPWG-LAIAP  253 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEEE------EeccCCcccCCce-eeeCh
Confidence                 11111  1         1111122222222222 4578999998775322      22211   11111 11111


Q ss_pred             Ccc-cCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          258 GGV-DDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       258 ~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..+ ...+..|+---.||+|..||..+++.+..+.
T Consensus       254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             hhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence            111 1345555555559999999999988765443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.98  E-value=21  Score=35.20  Aligned_cols=110  Identities=17%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008041          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK  190 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~  190 (579)
                      -...++++.+.++++.++.+ ..|.+++=....|..-.....+    ...+..+.+.|++..++++. |.+. .....++
T Consensus       213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~  290 (334)
T PRK13684        213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK  290 (334)
T ss_pred             CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence            34578999999998876654 5676654333444432222211    23578899999988888877 6554 3445554


Q ss_pred             eeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          191 KMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       191 ~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      .-....   .-......+.|..+++.++++  ..|.|-.|+-
T Consensus       291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~~  330 (334)
T PRK13684        291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYVG  330 (334)
T ss_pred             CCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEecC
Confidence            433332   222457788888777776654  5788877764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.89  E-value=8.6  Score=39.05  Aligned_cols=94  Identities=11%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC
Q 008041          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH  198 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h  198 (579)
                      .|..+..++.|..++-++.+|.+.++=.+..-.-..++..+..|+|=.+.-+.+++ +.+                   .
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss-------------------~  164 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSS-------------------T  164 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccC-------------------C
Confidence            46777888999998888889966655433333333344333344444443222111 111                   1


Q ss_pred             CCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCc
Q 008041          199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       199 ~~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .-.+...+|+|++   ..|+.-. .|..|++||+....
T Consensus       165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT  201 (741)
T ss_pred             ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence            1224456676654   3444444 48888888887654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.88  E-value=24  Score=35.67  Aligned_cols=144  Identities=15%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             EEEEEccCCCEEEEEeCCCcEE-EEeCCCCcee-eE-eecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe-----e
Q 008041          121 SAISFATHGSCIYSAGADGMVC-EIDPLTGSLL-GK-FRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----K  191 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~d~~v~-iwd~~~~~~~-~~-~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~-----~  191 (579)
                      ..+..+++|.+++.+ ..|.+. -||  .|... .. -......++++.+.+++.+++++. |.+. +....++     .
T Consensus       242 ~~v~~~~dG~~~~vg-~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVS-SRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEE-CCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence            344556777666555 344433 344  23321 11 122344789999999999998888 5543 3444443     2


Q ss_pred             eEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE
Q 008041          192 MQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       192 ~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (579)
                      ......  ....+..+.|.+++..++++  .+|.+.... ..++.-  ............+..+.|.     ++ ....+
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s~-D~G~tW--~~~~~~~~~~~~ly~v~f~-----~~-~~g~~  386 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRST-DGGKSW--KRDKGADNIAANLYSVKFF-----DD-KKGFV  386 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEeC-CCCcce--eEccccCCCCcceeEEEEc-----CC-CceEE
Confidence            222221  12358889999888766654  577665543 333321  0111001111223344443     33 44555


Q ss_pred             EEcCCeEEEE
Q 008041          270 ISETGVCYIW  279 (579)
Q Consensus       270 ~~~dg~i~iw  279 (579)
                      .+.+|.|.-|
T Consensus       387 ~G~~G~il~~  396 (398)
T PLN00033        387 LGNDGVLLRY  396 (398)
T ss_pred             EeCCcEEEEe
Confidence            6677887655

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.82  E-value=1.7  Score=27.70  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             CCEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 008041          118 GGVSAISFATHG---SCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus       118 ~~V~~l~~~~~~---~~l~s~~~d~~v~iwd~~~  148 (579)
                      +.|.++.|+|++   ..|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4777777889999999985

It contains a characteristic DLL sequence motif.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=89.41  E-value=21  Score=38.08  Aligned_cols=169  Identities=10%  Similarity=0.159  Sum_probs=88.4

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.|  +.+.|.++++.++.....|.|.+||...+....  ..+...  -....|+ .           -+.++...    
T Consensus       130 ~kv--v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~--~~~v~ys-~-----------fv~~~~~~----  189 (670)
T PF10395_consen  130 DKV--VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS--SINVSYS-K-----------FVNDFELE----  189 (670)
T ss_pred             cce--EEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc--ccceehh-h-----------hhcccccc----
Confidence            455  667999999999999999999999994333221  111100  0011111 0           01111100    


Q ss_pred             cccCCcEEEEEEC-CCe---EEEEEc--cCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008041           82 RKLGSSLLVLGTG-GGD---VLALAV--SAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        82 ~~~~~~~l~~~~~-~g~---i~iwd~--~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  153 (579)
                        .+..++++.+. .+.   .+++.+  ...... .+.  .-+........|..+...++-= .+++|.+|++...+...
T Consensus       190 --~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~  265 (670)
T PF10395_consen  190 --NGKDLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK  265 (670)
T ss_pred             --cCCceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Confidence              01344444443 332   777777  222221 221  1122223333343333333333 78899999998877666


Q ss_pred             EeecC-----C-CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee
Q 008041          154 KFRAS-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS  196 (579)
Q Consensus       154 ~~~~~-----~-~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~  196 (579)
                      ++.-.     . ..+.++.--...+.+++..+.|++.|+.-...+.++.
T Consensus       266 tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  266 TISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             EEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence            64432     1 2344444333456677777999999987655554443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.09  E-value=1.9  Score=26.73  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=22.4

Q ss_pred             ecCCCCEEEEEEecCCCEEEEEecCC--CeEEEE
Q 008041          196 SGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW  227 (579)
Q Consensus       196 ~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vw  227 (579)
                      ......-....|+|||++|+.++..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455677889999999988887666  666655

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.63  E-value=7.6  Score=41.26  Aligned_cols=90  Identities=16%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCC
Q 008041          179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       179 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                      -.|+||+. +|+.+.++....+.+-.+.|+.+...++. . .||++.+|++........ .+..-.....+..|..|.  
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~-k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~--  137 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-Q-KDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFH--  137 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-e-ccceEEEeecchhhhccc-ccccccccCceeEEEEec--
Confidence            56888886 56666666555558889999988776655 4 799999999887654321 111111233455666663  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEE
Q 008041          259 GVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       259 ~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                          +|  +++-..+|++.+-+
T Consensus       138 ----~G--Vavlt~~g~v~~i~  153 (829)
T KOG2280|consen  138 ----NG--VAVLTVSGQVILIN  153 (829)
T ss_pred             ----Cc--eEEEecCCcEEEEc
Confidence                44  44445566655543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.46  E-value=7.7  Score=43.96  Aligned_cols=145  Identities=14%  Similarity=0.238  Sum_probs=81.4

Q ss_pred             eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEc
Q 008041           24 SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAV  103 (579)
Q Consensus        24 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~  103 (579)
                      +.|+.+.+|+..++.....+.+....+..+..-.+ ..|-+...+                  .++++-+.--.|.++-+
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I------------------qhlLvvaT~~ei~ilgV  156 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI------------------QHLLVVATPVEIVILGV  156 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh------------------heeEEecccceEEEEEE
Confidence            45889999999998877777776665554433222 112221111                  22333333344444443


Q ss_pred             cCCeEE--EEecC------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCC---c-e----------------ee
Q 008041          104 SAGQLK--WRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTG---S-L----------------LG  153 (579)
Q Consensus       104 ~~~~~~--~~~~~------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~--~~~---~-~----------------~~  153 (579)
                      .-.+..  ...+.      -....|+|+....+|+.|++| .||.|+-.-.  .+|   + +                +-
T Consensus       157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~  235 (1311)
T KOG1900|consen  157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL  235 (1311)
T ss_pred             EeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence            321110  00111      123468899977888877665 6665543221  111   1 1                11


Q ss_pred             Eee-cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008041          154 KFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (579)
Q Consensus       154 ~~~-~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~  188 (579)
                      .+. .+..+|..+++...-+++.+-+  |+|.+||+..
T Consensus       236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            122 3466999999998777777766  8999999976

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.41  E-value=3  Score=38.19  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=42.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEe------cC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                      +.++++-+.+|.+++||+.+++.+...      +.       .....|..+.++.+|.-+++- .+|..+.||..
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence            778999999999999999998875322      12       244567777777777655554 34667777643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.37  E-value=27  Score=34.36  Aligned_cols=89  Identities=18%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             EEEEECCCeEEEEEccCCeE---EEEe---cCCCCCCEEEEEEccC---CCEEEEEeCC---------CcEEEEeCCCC-
Q 008041           89 LVLGTGGGDVLALAVSAGQL---KWRL---SDCHPGGVSAISFATH---GSCIYSAGAD---------GMVCEIDPLTG-  149 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~---~~~~---~~~h~~~V~~l~~~~~---~~~l~s~~~d---------~~v~iwd~~~~-  149 (579)
                      ++++...|.|++++ ..+..   +...   .........+++|+|+   ..+|+.....         ..|.-|....+ 
T Consensus        15 l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~   93 (331)
T PF07995_consen   15 LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGD   93 (331)
T ss_dssp             EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTS
T ss_pred             EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCc
Confidence            56678899999999 44433   2222   2234457899999994   3455444331         24544544333 


Q ss_pred             ------cee-eEeec---CCCCeeEEEEccCCCEEEEEC
Q 008041          150 ------SLL-GKFRA---STKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       150 ------~~~-~~~~~---~~~~v~~l~~~p~g~~l~~~~  178 (579)
                            +.+ ..+..   ....-..|.|.|||.++++.+
T Consensus        94 ~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   94 GDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             CEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             cccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence                  111 11222   223557799999998777754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.01  E-value=7.6  Score=41.43  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             CcEEEEEECCCeEEEEEccC----CeEEEEe-cCC--------------------CCCCEEEEEEcc----CCCEEEEEe
Q 008041           86 SSLLVLGTGGGDVLALAVSA----GQLKWRL-SDC--------------------HPGGVSAISFAT----HGSCIYSAG  136 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~----~~~~~~~-~~~--------------------h~~~V~~l~~~~----~~~~l~s~~  136 (579)
                      ...++++..||.+.......    +...... ...                    ....+.++++++    +..++++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            66788889999988777664    2211111 111                    123456666666    677899999


Q ss_pred             CCCcEEEEeCCCCceeeEeecC
Q 008041          137 ADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus       137 ~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                      .|+++|+||+.+++++.+..-.
T Consensus       238 ~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCeEEEEECCCCeEEEEeccc
Confidence            9999999999999998776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.58  E-value=28  Score=33.50  Aligned_cols=191  Identities=9%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             eEEEEccCCCEEE--EEeC----------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041            9 ILTSFSPALDYFA--ICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         9 l~~~fspdg~~la--sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      ..+...++|++-+  +|..          .-+|.+||+.+++.++++.-+........+            ...+.....
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~------------lndl~VD~~   71 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSF------------LNDLVVDVR   71 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGG------------EEEEEEECT
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccc------------cceEEEEcc
Confidence            3446677776433  3321          127889999999998887643322211111            111111111


Q ss_pred             ccccccccCCcEEEEEECC-CeEEEEEccCCeEEEEecCCC-------------------CCCEEEEEEcc---CCCEEE
Q 008041           77 DRKKKRKLGSSLLVLGTGG-GDVLALAVSAGQLKWRLSDCH-------------------PGGVSAISFAT---HGSCIY  133 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h-------------------~~~V~~l~~~~---~~~~l~  133 (579)
                      +..    .+..+++++... +.|.|+|+.+++.-... ..+                   .+.+.+++.+|   +|+.|+
T Consensus        72 ~~~----~~~~~aYItD~~~~glIV~dl~~~~s~Rv~-~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY  146 (287)
T PF03022_consen   72 DGN----CDDGFAYITDSGGPGLIVYDLATGKSWRVL-HNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY  146 (287)
T ss_dssp             TTT----S-SEEEEEEETTTCEEEEEETTTTEEEEEE-TCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred             CCC----CcceEEEEeCCCcCcEEEEEccCCcEEEEe-cCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence            100    002445555554 45999999988764222 111                   12366666655   666666


Q ss_pred             EEeCCC-cEEEEeC---CCC---------ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---eeeEEe
Q 008041          134 SAGADG-MVCEIDP---LTG---------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKF  195 (579)
Q Consensus       134 s~~~d~-~v~iwd~---~~~---------~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~---~~~~~~  195 (579)
                      .+...+ .++--..   ++.         +.+..+-........++++++|.++.+--  +.|..|+..+.   +....+
T Consensus       147 f~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l  226 (287)
T PF03022_consen  147 FHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEIL  226 (287)
T ss_dssp             EEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEE
T ss_pred             EEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchhee
Confidence            665433 2322221   111         11222211123567788999998887766  89999998862   112222


Q ss_pred             e--cC-CCCEEEEEEec--CCCEEEE
Q 008041          196 S--GH-PGAVRFMTFSD--NGKYVLS  216 (579)
Q Consensus       196 ~--~h-~~~v~~l~~s~--~~~~l~s  216 (579)
                      .  .. -..+..+.+.+  +|...+.
T Consensus       227 ~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  227 AQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             EE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             EEcCceeeccceeeeccccCceEEEE
Confidence            1  11 34677888887  6654444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.93  E-value=39  Score=37.71  Aligned_cols=112  Identities=10%  Similarity=-0.005  Sum_probs=74.0

Q ss_pred             CCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-----eeeEeecCC----------CCeeEEEEccCCCEEEEEC-Ce
Q 008041          118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAST----------KGISCMAVSSDGKMLATAA-GQ  180 (579)
Q Consensus       118 ~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~----------~~v~~l~~~p~g~~l~~~~-~~  180 (579)
                      .+..+++|+| +.+.|+.....|.-.+||+..+.     .......+.          ..-..+.|.++-+.|++++ ..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~  225 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK  225 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence            4678999999 44579999999999999992111     111111111          1234788988888888888 89


Q ss_pred             EEEEECCCCeeeEEe--ecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCC
Q 008041          181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       181 i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~--~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      +.++|+++......+  ......|..+.-+|.  +..|+-+   ...|...++...
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~  278 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS  278 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence            999999987553212  234467888888876  3333332   356777787763

These proteins are found in fungi.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.37  E-value=40  Score=34.11  Aligned_cols=107  Identities=13%  Similarity=0.103  Sum_probs=68.1

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----eeeEeec--CCCCeeEEEEccCCCEEEEEC-CeEEEEECC
Q 008041          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-----LLGKFRA--STKGISCMAVSSDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~--~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~  187 (579)
                      ....++++.|.+++..++++ .+|.+.. ....++     .......  ....+..+.+.+++..+++|. |.+... ..
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D  355 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD  355 (398)
T ss_pred             CccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence            34568899999998877655 6666543 334443     2222221  123588999999999999998 666555 34


Q ss_pred             CCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       188 ~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .|+.-....   .-......+.|.++++-++++  .+|.|--|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence            554433322   224567899998877776664  57877654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.36  E-value=61  Score=36.22  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=76.6

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCC----------CCEEEEEEccCCC
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHP----------GGVSAISFATHGS  130 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~----------~~V~~l~~~~~~~  130 (579)
                      +.+...++++|.+        ...+|+....|...||++..+    .........+.          +.-..+.|.++-+
T Consensus       145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~  216 (765)
T PF10214_consen  145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN  216 (765)
T ss_pred             CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence            3456667777766        558999999999999999211    11111111122          2334788988888


Q ss_pred             EEEEEeCCCcEEEEeCCCCceee-Eee-cCCCCeeEEEEccC--CCEEEEECCeEEEEECCC
Q 008041          131 CIYSAGADGMVCEIDPLTGSLLG-KFR-ASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD  188 (579)
Q Consensus       131 ~l~s~~~d~~v~iwd~~~~~~~~-~~~-~~~~~v~~l~~~p~--g~~l~~~~~~i~vwd~~~  188 (579)
                      .|+.++ ...+.++|+.+..... ... .....|..+.-+|+  +..++..+..|...++..
T Consensus       217 ~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  217 RLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             EEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            888875 4568899998776533 222 23357888888887  566666668888888876

These proteins are found in fungi.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.33  E-value=4.8  Score=25.20  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041          127 THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus       127 ~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      |++++++++. .+++|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5777766655 5789999999888888777653 33344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.21  E-value=59  Score=35.01  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=73.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~  160 (579)
                      ..-++....+|.+++|++.......  .-.......|..+.|..+|-.+++  .+|++.+-+-......++++.   ..-
T Consensus        94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~  171 (829)
T KOG2280|consen   94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNEL  171 (829)
T ss_pred             CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccC
Confidence            4558889999999999987543321  111222334666666656644444  455565544222212223322   111


Q ss_pred             CeeEEEEccCCC---EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          161 GISCMAVSSDGK---MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~---~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +.+|-...+++.   .++-..    -.+..-+....+ ...+....+.+..+..||+.++|+--. .+|.|.+-+.+..+
T Consensus       172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ  249 (829)
T ss_pred             CCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence            222333333321   121111    111111211222 122222245678899999999988876 68888888777655


Q ss_pred             c
Q 008041          234 K  234 (579)
Q Consensus       234 ~  234 (579)
                      .
T Consensus       250 ~  250 (829)
T KOG2280|consen  250 I  250 (829)
T ss_pred             h
Confidence            3

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.17  E-value=33  Score=39.25  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKG   37 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~   37 (579)
                      ..++|+|...++|.|..+|.|+++-...-
T Consensus        39 ~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   39 SALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             cceeeccccceEEEEEecccEEEecccce
Confidence            34599999999999999999999875433

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=84.65  E-value=47  Score=33.41  Aligned_cols=13  Identities=15%  Similarity=0.199  Sum_probs=9.5

Q ss_pred             eEEEEEccCCeEE
Q 008041           97 DVLALAVSAGQLK  109 (579)
Q Consensus        97 ~i~iwd~~~~~~~  109 (579)
                      .+..||+.+++..
T Consensus       107 ~v~~YD~~~n~W~  119 (376)
T PRK14131        107 DVYKYDPKTNSWQ  119 (376)
T ss_pred             cEEEEeCCCCEEE
Confidence            4888998877643

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.63  E-value=3.8  Score=40.61  Aligned_cols=198  Identities=12%  Similarity=0.201  Sum_probs=99.3

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE----EEEecCCCCCCEEEEEEccCCC--------EEEEE
Q 008041           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGS--------CIYSA  135 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~~~~~~--------~l~s~  135 (579)
                      ...+.|....+.      ...++.|..+|.+.+....-...    -+.+..+    -.-++..++|+        ..+..
T Consensus       115 ~ppv~wa~~~~g------qp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g----~~p~aLd~qgr~leh~~~~lalA~  184 (733)
T COG4590         115 FPPVLWAQTPPG------QPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPG----LEPLALDEQGRLLEHPLQQLALAL  184 (733)
T ss_pred             CCCcccccCCCC------CceEEEeccCCeEEEEeccccccCCCCCccCCCC----CCccccCcccCcccchHHHhhhcc
Confidence            345667655443      67899999999999887642211    0011111    11112222222        22333


Q ss_pred             eCCCcEEEEeCC------------CCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee-eEEee-cCCC
Q 008041          136 GADGMVCEIDPL------------TGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK-MQKFS-GHPG  200 (579)
Q Consensus       136 ~~d~~v~iwd~~------------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~-~~~~~-~h~~  200 (579)
                      +.+.....+|..            .++.+..+......+..+-..|||+.+..-+ .++.++++.+... .+++- ...+
T Consensus       185 ~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg  264 (733)
T COG4590         185 TAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG  264 (733)
T ss_pred             chhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC
Confidence            334433344332            1233333444556788889999999988877 6888888765432 11221 1111


Q ss_pred             ----CEE-EEEEecCCCEEEEEecCCCeEEEE-EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          201 ----AVR-FMTFSDNGKYVLSSAVGERYIALW-RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       201 ----~v~-~l~~s~~~~~l~s~~~~d~~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                          .|+ ++..-..|..++... .||.|..| |.+.+.......+....-....+....-.     .+.+-+++-+.+|
T Consensus       265 ~~~~~Vte~l~lL~Gg~SLLv~~-~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-----~~rkgF~~l~~~G  338 (733)
T COG4590         265 DSRHQVTEQLYLLSGGFSLLVVH-EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-----TNRKGFYSLYRNG  338 (733)
T ss_pred             chHHHHHHHHHHHhCceeEEEEc-CCCceeeeeeeecCCCCcceeeeccccCcccceeeccc-----cccceEEEEcCCC
Confidence                122 112223455566665 79999888 55544333222222222222222222221     2345566667777


Q ss_pred             eEEEEEc
Q 008041          275 VCYIWYG  281 (579)
Q Consensus       275 ~i~iwd~  281 (579)
                      ++.+|..
T Consensus       339 ~L~~f~s  345 (733)
T COG4590         339 TLQSFYS  345 (733)
T ss_pred             ceeeeec
Confidence            7777653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.35  E-value=0.19  Score=49.82  Aligned_cols=141  Identities=16%  Similarity=0.200  Sum_probs=93.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +...|-|.+.-++.++.+..+..||-. |+...+...                   ....-.++|...        +...
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~-------------------tg~aldm~wDke--------gdvl   89 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP-------------------TGKALDMAWDKE--------GDVL   89 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC-------------------chhHhhhhhccc--------cchh
Confidence            445788887778888888888889854 444332221                   112223445441        1455


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      ++.+-..+.+++||+.+.... ++..+-+..-.=+.|++.+..++.+...|.+.+++..+.+.+-..-.|...++++++.
T Consensus        90 avlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~  168 (615)
T KOG2247|consen   90 AVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT  168 (615)
T ss_pred             hhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence            677888899999999875432 1111112222226788888888888889999999987776655555588899999999


Q ss_pred             cCCCEEEEEC
Q 008041          169 SDGKMLATAA  178 (579)
Q Consensus       169 p~g~~l~~~~  178 (579)
                      +.+..+..+.
T Consensus       169 lEd~vil~dc  178 (615)
T KOG2247|consen  169 LEDYVILCDC  178 (615)
T ss_pred             ccceeeecCc
Confidence            9886665544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.04  E-value=32  Score=31.02  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=63.7

Q ss_pred             CEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCeeEEEEccCCCEEEEEC-----C---eEEEE-ECCC----CeeeE-
Q 008041          130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF-NCSD----HKKMQ-  193 (579)
Q Consensus       130 ~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~---~i~vw-d~~~----~~~~~-  193 (579)
                      ..++.+...+.|.+|++.  ..+....|.. -+.|..+.++..|+++++--     .   .+++| +.+.    .+.+. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            445444667789999988  3345556664 37899999999999999864     3   56665 2221    12221 


Q ss_pred             EeecC---------------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       194 ~~~~h---------------------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .+-||                     ..++.+++..|...-|+.++  ++.+.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence            12222                     23466777777544455554  6789999886653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.03  E-value=45  Score=36.19  Aligned_cols=100  Identities=12%  Similarity=0.124  Sum_probs=63.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-------C-------------ceeeEeecCCCCeeEEEEc--cCCCEEEEEC--CeEEE
Q 008041          128 HGSCIYSAGADGMVCEIDPLT-------G-------------SLLGKFRASTKGISCMAVS--SDGKMLATAA--GQLKT  183 (579)
Q Consensus       128 ~~~~l~s~~~d~~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~~--p~g~~l~~~~--~~i~v  183 (579)
                      +...|+.|.+||.|.+|.+++       .             ++...+. -...+..++++  ...+++|+++  ..|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            445688999999999996521       1             0112222 23478899998  7888888888  45555


Q ss_pred             E--ECCCCee-eEEeecCCCCEEEEEEecCC-----C-EEEEEecCCCeEEEEEc
Q 008041          184 F--NCSDHKK-MQKFSGHPGAVRFMTFSDNG-----K-YVLSSAVGERYIALWRT  229 (579)
Q Consensus       184 w--d~~~~~~-~~~~~~h~~~v~~l~~s~~~-----~-~l~s~~~~d~~i~vwd~  229 (579)
                      |  .+...+. ...-..|...|-+|.|-++.     . .+++++ -.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence            5  4422221 11112356778899997653     2 455554 7899998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=83.59  E-value=88  Score=35.74  Aligned_cols=142  Identities=18%  Similarity=0.235  Sum_probs=79.5

Q ss_pred             CcEEEEEEC---------CCeEEEEEccC-----C------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041           86 SSLLVLGTG---------GGDVLALAVSA-----G------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus        86 ~~~l~~~~~---------~g~i~iwd~~~-----~------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd  145 (579)
                      ..++++|+.         .|.++|||+-.     |      +....+.++..++|..++ .-+|. |+++ ....|.+|+
T Consensus      1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G~-l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRGH-LLSS-QGQKIIVRK 1122 (1366)
T ss_pred             cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-EeccE-EEEc-cCcEEEEEE
Confidence            578888884         47799999743     2      122223345667787776 34564 5454 345699999


Q ss_pred             C-CCCceeeE-eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeec--CCCCEEEEEEecCCC--EEEE
Q 008041          146 P-LTGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSG--HPGAVRFMTFSDNGK--YVLS  216 (579)
Q Consensus       146 ~-~~~~~~~~-~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~--h~~~v~~l~~s~~~~--~l~s  216 (579)
                      + +....+.. |-  .-++.-....-=.++++.|+  ..|.+.-.+. ...+.-+..  ..-.+.++.|--||.  ++++
T Consensus      1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred             eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence            8 44444332 22  12222223333356777777  5555544433 222322221  123577888877765  4444


Q ss_pred             EecCCCeEEEEEcCCCc
Q 008041          217 SAVGERYIALWRTDGVK  233 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~  233 (579)
                      + +.|++|++|-.....
T Consensus      1201 s-Da~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1201 S-DADRNIHVYMYAPEN 1216 (1366)
T ss_pred             E-cCCCcEEEEEeCCCC
Confidence            4 578999888765543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.52  E-value=5.6  Score=24.88  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             cCCCEEEEEC---CeEEEEECCCCeeeEEeec
Q 008041          169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       169 p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~  197 (579)
                      |+++.++++.   ++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            6778777765   7999999999888877765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.26  E-value=44  Score=31.95  Aligned_cols=117  Identities=9%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECC------CC-eeeEEeec-----CCCCEEEEEEecCCCE------------EE
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCS------DH-KKMQKFSG-----HPGAVRFMTFSDNGKY------------VL  215 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~------~~-~~~~~~~~-----h~~~v~~l~~s~~~~~------------l~  215 (579)
                      -..|+++|.+.+-++..  +...+||..      .. ..+-+++.     .....+.+.|+....+            ++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            36789999886655544  789999986      12 22334432     1245677777643322            34


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ  282 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  282 (579)
                      .++ +||+|.-|...-.............  ....+...+++...   ..+.+|.++.. .|+|.+||-.
T Consensus       105 f~t-EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~---~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       105 FVT-EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPT---GGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEe-CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeec---CCCceEEEeccCCCceEEecCc
Confidence            455 7999999996544321000111222  22344444554311   33566766654 7899999843

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.49  E-value=24  Score=35.37  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccC-ccccccccccccccccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++|..+  -..|||+.|..-+. ..+.|+++.+.....+ +... .+.+.           |   .++.        ...
T Consensus       221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----------~---~Vte--------~l~  275 (733)
T COG4590         221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----------H---QVTE--------QLY  275 (733)
T ss_pred             cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----------H---HHHH--------HHH
Confidence            345444  67899998776554 5788998875543221 1100 00000           0   0000        000


Q ss_pred             cccCCcEEEEEECCCeEEEE-EccCCeEE--E--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           82 RKLGSSLLVLGTGGGDVLAL-AVSAGQLK--W--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iw-d~~~~~~~--~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                      --.++..+++++.||-|.-| |+..+...  .  +..+-...++..+.-..+.+.|++-+.+|++..+.-...+.+- +.
T Consensus       276 lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~  354 (733)
T COG4590         276 LLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FE  354 (733)
T ss_pred             HHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hh
Confidence            00125568888889887665 55443221  0  0001111233333322344557888888888887754443332 22


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee
Q 008041          157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK  191 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~  191 (579)
                      .--..+.-+++||.+.++++-. |.|+++.+++..+
T Consensus       355 ~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         355 RAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             hhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence            2223667799999999999988 8999998876543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.24  E-value=31  Score=32.05  Aligned_cols=115  Identities=15%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             CcEEEEEECC-C--eEEEEEccC--CeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCC-C-ceeeE
Q 008041           86 SSLLVLGTGG-G--DVLALAVSA--GQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGM-VCEIDPLT-G-SLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~-g--~i~iwd~~~--~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~d~~-v~iwd~~~-~-~~~~~  154 (579)
                      ++++.+|+.. |  .+++++...  +.+.+.-..   ...-.=-+..--|||+.|+.|+.+.- ...|.-.. . .....
T Consensus        78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~  157 (243)
T PF07250_consen   78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTL  157 (243)
T ss_pred             CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceee
Confidence            6777776542 3  388888765  111111000   00001112334579999888887653 34444321 1 11111


Q ss_pred             -eec------CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCC
Q 008041          155 -FRA------STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPG  200 (579)
Q Consensus       155 -~~~------~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~  200 (579)
                       +..      ...-.-.+...|+|++++.+...-.+||..+.+.++.++.-.+
T Consensus       158 ~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  158 PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             ecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCC
Confidence             111      1122235677899999999997677889998887777764433

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=81.58  E-value=47  Score=31.16  Aligned_cols=184  Identities=13%  Similarity=0.094  Sum_probs=107.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee----cCCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----ASTKG  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~  161 (579)
                      +..-+.+...|.|--.|..+|+...-- -+....-..+..-|||..-++-+.. -|.-.|-++.+.. .|.    .....
T Consensus        73 G~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~n  149 (353)
T COG4257          73 GAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADAN  149 (353)
T ss_pred             CceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-EeecccccCCCc
Confidence            556677777788888999999876333 3445566788888988776654333 4555665554322 222    22346


Q ss_pred             eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .....|.+.|++-.++. |.---.|-.+ ..+..|.. ....-..|+..|+|...++.- .++.|-..|...+...   .
T Consensus       150 let~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~ae---v  224 (353)
T COG4257         150 LETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAE---V  224 (353)
T ss_pred             ccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcc---e
Confidence            78889999999988876 2111111111 12223321 123346788899998766643 5777887787766322   1


Q ss_pred             eeeeecC-ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          240 VLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                       +..... ..-.+-++.+     |.|+.-++....|.++-||..+
T Consensus       225 -~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         225 -VPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             -ecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCccc
Confidence             111111 1222333343     6777777766677888877543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.49  E-value=90  Score=36.00  Aligned_cols=139  Identities=10%  Similarity=0.166  Sum_probs=82.5

Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--------ccCCCEEEEEeCCCcEEEEeCC----CCce-----eeE
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--------ATHGSCIYSAGADGMVCEIDPL----TGSL-----LGK  154 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~l~s~~~d~~v~iwd~~----~~~~-----~~~  154 (579)
                      .+.|.++.+|+..++.....+ .+-...|..+..        -|.=++++..+.--.|.++-+.    ++..     ..+
T Consensus        95 iTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence            456788999999985544333 344444554432        2333444443344445554322    1110     012


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC-CeEEE--EECCCC---e-e----------------eEEee-cCCCCEEEEEEecC
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA-GQLKT--FNCSDH---K-K----------------MQKFS-GHPGAVRFMTFSDN  210 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~-~~i~v--wd~~~~---~-~----------------~~~~~-~h~~~v~~l~~s~~  210 (579)
                      +......|+|+....+|+.+.+|- |.|+=  |....+   + +                +..+. .+..+|..+.....
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            222345789999899999999987 75432  222221   1 0                11233 56779999999887


Q ss_pred             CCEEEEEecCCCeEEEEEcCCC
Q 008041          211 GKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ...+.+-+ ..++|.+|++...
T Consensus       254 R~IlY~ls-ek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  254 RNILYVLS-EKGTVSAYDIGGN  274 (1311)
T ss_pred             cceeeeec-cCceEEEEEccCC
Confidence            77777776 7899999999874

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.38  E-value=29  Score=28.64  Aligned_cols=111  Identities=7%  Similarity=0.011  Sum_probs=60.4

Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCC--------eeeEEeecCCCCEEEEEEec-----CCCEEEEEecCCCeEEEEEcC
Q 008041          166 AVSSDGKMLATAA--GQLKTFNCSDH--------KKMQKFSGHPGAVRFMTFSD-----NGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       166 ~~~p~g~~l~~~~--~~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      .|......|+++.  |.|.|++....        ..+..+. -...|++++-.+     +...|+.++  ...+..||+.
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt--~t~llaYDV~   81 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT--QTSLLAYDVE   81 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--cceEEEEEcc
Confidence            4554555566655  88999876533        2233333 345677775443     234666664  6789999999


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      .....   ....++.....+.+-.+.     ....-++..+.+..|.-||.+-.+.+
T Consensus        82 ~N~d~---Fyke~~DGvn~i~~g~~~-----~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   82 NNSDL---FYKEVPDGVNAIVIGKLG-----DIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             cCchh---hhhhCccceeEEEEEecC-----CCCCcEEEECceEEEEEeCCCCcEEE
Confidence            87644   111222222233333332     22334445555567777876554443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=81.18  E-value=65  Score=33.01  Aligned_cols=32  Identities=6%  Similarity=0.175  Sum_probs=24.4

Q ss_pred             CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       200 ~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ..|.+++..+..+.+++.. .++.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~-~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLT-SDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEE-SSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEe-CCCcEEEEEEeCC
Confidence            4488999988888888887 6999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.54  E-value=50  Score=31.52  Aligned_cols=93  Identities=12%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeec-----CCCCeeE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRA-----STKGISC  164 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~-----~~~~v~~  164 (579)
                      ..|.+||..+.+-. .+-.+-.+.|+++.|..+.+.++.|.      ....+..||+.+.. ...+..     -.++|..
T Consensus        16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence            44889998877654 22234567899999986666666663      35568889986553 333333     1357777


Q ss_pred             EEEcc-CCCEEEEEC------CeEEEEECCCCe
Q 008041          165 MAVSS-DGKMLATAA------GQLKTFNCSDHK  190 (579)
Q Consensus       165 l~~~p-~g~~l~~~~------~~i~vwd~~~~~  190 (579)
                      +.+.. |+..+..++      ..|..||-.+..
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~  126 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS  126 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence            77643 444344332      245666544433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.42  E-value=69  Score=32.35  Aligned_cols=120  Identities=16%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..++|+++  .||+|.+.||.--.|..|.+++....+....... ..             .-....+--..|..      
T Consensus        65 d~G~I~SI--kFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~-~c-------------k~k~~~IlGF~W~~------  122 (657)
T KOG2377|consen   65 DKGEIKSI--KFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ-EC-------------KTKNANILGFCWTS------  122 (657)
T ss_pred             CCCceeEE--EeccCcceEEEEecCceEEEEecCCCchhhHHHH-Hh-------------ccCcceeEEEEEec------
Confidence            35789555  9999999999999999999998754333221110 00             00011233345544      


Q ss_pred             cccCCcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCC
Q 008041           82 RKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTG  149 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~  149 (579)
                          +.-++.-+..|. ++--+......  ++.+.|...|.-..|.++.+.++-++  ..+++.=+.++++
T Consensus       123 ----s~e~A~i~~~G~e~y~v~pekrsl--RlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  123 ----STEIAFITDQGIEFYQVLPEKRSL--RLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             ----CeeEEEEecCCeEEEEEchhhhhh--hhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence                233555555553 33333333322  44467888999999999888744333  3334444444444

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=80.11  E-value=73  Score=32.42  Aligned_cols=182  Identities=7%  Similarity=0.023  Sum_probs=104.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---C-------------
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---G-------------  149 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~---~-------------  149 (579)
                      ..+|.+-+.||.+.+|+-..-... .++.. .--...+.|.+....|++++.+..+..|....   .             
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~-~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~  222 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFS-RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD  222 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEE-EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence            578999999999999997655433 22222 22334567888888999999998898886421   0             


Q ss_pred             ----c---eeeEeecCCCCeeE---EEEc-cCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEE-EEec----CCC-
Q 008041          150 ----S---LLGKFRASTKGISC---MAVS-SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM-TFSD----NGK-  212 (579)
Q Consensus       150 ----~---~~~~~~~~~~~v~~---l~~~-p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l-~~s~----~~~-  212 (579)
                          +   +-.++.- ...+..   +.++ .....++.|..++.+.+- +|+.... ........++ .|..    ++. 
T Consensus       223 ~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~-krLd~~p~~~~~Y~~~~~~~~~~  299 (418)
T PF14727_consen  223 ISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQ-KRLDYNPSCFCPYRVPWYNEPST  299 (418)
T ss_pred             ccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEE-EecCCceeeEEEEEeecccCCCC
Confidence                0   0111111 123333   3333 233455556688888875 5644332 2233332332 2221    222 


Q ss_pred             --EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          213 --YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       213 --~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                        .++.++ .++++.||.=.+-.     ....+.+....+....+.     .-...|++-+.+|.+.+-=+.|
T Consensus       300 ~~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  300 RLNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             ceEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEeCC
Confidence              355555 68999998743322     122334555555555554     4457788889999998875443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=80.08  E-value=63  Score=31.72  Aligned_cols=102  Identities=16%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCc------EEEEeCCC--C--ceee-----EeecCCC--------CeeEEEEccCCC
Q 008041          116 HPGGVSAISFATHGSCIYSAGADGM------VCEIDPLT--G--SLLG-----KFRASTK--------GISCMAVSSDGK  172 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~d~~------v~iwd~~~--~--~~~~-----~~~~~~~--------~v~~l~~~p~g~  172 (579)
                      .-+...++.+.|++..+++.+.+|.      ++.+++..  +  ..+.     .++...+        ..-+|++.++|.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3467889999876777888888888      66666543  1  1111     1111111        334788877888


Q ss_pred             EEEEECC--------eEEEEECCCCeeeEEee---------------cCCCCEEEEEEecCCCEEEEEe
Q 008041          173 MLATAAG--------QLKTFNCSDHKKMQKFS---------------GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       173 ~l~~~~~--------~i~vwd~~~~~~~~~~~---------------~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ++++.-+        .|+.++.. |+.+..+.               ..+...-+|+++|+|+.|+++.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            8777652        57777765 65544431               1234578899999999666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.61
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.41
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.28
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.21
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.17
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.15
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.14
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.1
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.08
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.0
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.9
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.9
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.89
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.85
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.82
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.72
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.71
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.65
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.5
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.41
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.4
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.3
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.28
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.24
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.2
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.19
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.12
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.1
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.92
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.91
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.79
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.66
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.59
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.51
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.47
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.42
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.42
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.41
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.06
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.0
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.81
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.7
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.54
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.49
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.16
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.97
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.96
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.22
3ott_A	758	Two-component system sensor histidine kinase; beta	95.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.2
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.13
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.05
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.8
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.15
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.36
3ott_A	758	Two-component system sensor histidine kinase; beta	89.99
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.24

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-41  Score=347.54  Aligned_cols=281  Identities=15%  Similarity=0.267  Sum_probs=248.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++|++|+.||+|+|||+.+++....+.+|...+.++.|+++                       
T Consensus       107 h~~~V--~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-----------------------  161 (410)
T 1vyh_C          107 HRSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-----------------------  161 (410)
T ss_dssp             CSSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred             cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-----------------------
Confidence            35678  55599999999999999999999999999999999888776666666555                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++|+.||.|++||+.+++++..+ .+|...|.+++|+|+++++++|+.|++|++||+.++.++.++.+|...
T Consensus       162 ----~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          162 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence                788999999999999999999887555 789999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--------------------CCEEEEEec
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~--------------------~~~l~s~~~  219 (579)
                      |.++.++|+|+++++|+  +.|++||+.++++...+.+|...|.+++|+|+                    +.++++++ 
T Consensus       237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-  315 (410)
T 1vyh_C          237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-  315 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-
Confidence            99999999999999998  89999999999999999999999999999996                    66888887 


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      .|+.|++||++++.     ++..+..+...+..+.|+     |+|++|++++.||+|++||+.+++.+            
T Consensus       316 ~D~~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~------------  373 (410)
T 1vyh_C          316 RDKTIKMWDVSTGM-----CLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCM------------  373 (410)
T ss_dssp             TTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCC------------
T ss_pred             CCCeEEEEECCCCc-----eEEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceE------------
Confidence            79999999999876     345555666677788887     99999999999999999997654321            


Q ss_pred             ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                                 ..+.+|...|.+++|+|+|.+| +|||.|+++++|++
T Consensus       374 -------------------------------------------~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          374 -------------------------------------------KTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC  409 (410)
T ss_dssp             -------------------------------------------EEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred             -------------------------------------------EEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence                                                       1344788899999999999999 99999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.1e-41  Score=332.89  Aligned_cols=280  Identities=15%  Similarity=0.196  Sum_probs=241.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|||++|++|+.||+|+|||..++.....+..|...+..+.|+++                       
T Consensus        54 H~~~v--~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------  108 (340)
T 1got_B           54 HLAKI--YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-----------------------  108 (340)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-----------------------
T ss_pred             CCCce--EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-----------------------
Confidence            35678  55699999999999999999999999999999888877666655555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++|+.|+.|++||+.+++   .......+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|
T Consensus       109 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h  183 (340)
T 1got_B          109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             ----CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence                7889999999999999998753   22233468999999999998875 889999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      .+.|.+++|+|+++++++|+  +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||++..+.. 
T Consensus       184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~-  261 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE-
Confidence            99999999999999999998  8999999999999999999999999999999999999988 7999999999987533 


Q ss_pred             ceeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          237 ASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       237 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                          ....+.  ...+..+.|+     |+|++|++|+.||.|++||..+++.+                           
T Consensus       262 ----~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~---------------------------  305 (340)
T 1got_B          262 ----MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA---------------------------  305 (340)
T ss_dssp             ----EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred             ----EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe---------------------------
Confidence                233332  2356778887     99999999999999999997654321                           


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                  ..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus       306 ----------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd  340 (340)
T 1got_B          306 ----------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             ----------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             ----------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence                                        1344788899999999999999 9999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=325.19  Aligned_cols=281  Identities=14%  Similarity=0.162  Sum_probs=241.9

Q ss_pred             CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      +.++|  .+++|+|+    +.+|++|+.|++|+|||+.+++.  ...+.+|...+.++.++++                 
T Consensus        31 H~~~V--~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-----------------   91 (321)
T 3ow8_A           31 HDDAI--WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-----------------   91 (321)
T ss_dssp             SSSCE--EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------------
T ss_pred             CCCcE--EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------------
Confidence            46788  55599985    67999999999999999987764  3456666665555555444                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                                +.++++++.|+.|++||+.+++.+..+ ..|...+.+++|+|+++++++++.|+.|++||+.+++....+
T Consensus        92 ----------~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           92 ----------LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             ----------CCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence                      678999999999999999999988666 568889999999999999999999999999999999999999


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ..+...|.+++|+|+|++|++++  |.|++||+++++.+.++.+|..+|.+++|+|++++|++++ .|+.|++||++..+
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence            99999999999999999999998  8999999999999999999999999999999999999987 79999999998875


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      .     ...+..+...+..+.|+     |++.+|++++.||+|++||+.+++.+.                         
T Consensus       240 ~-----~~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------  284 (321)
T 3ow8_A          240 L-----AGTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH-------------------------  284 (321)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred             e-----eEEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE-------------------------
Confidence            3     34555666667788888     999999999999999999987664322                         


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                    .+.+|...|.+++|+|||.+| ++++.|+++++|+.
T Consensus       285 ------------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          285 ------------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC  319 (321)
T ss_dssp             ------------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred             ------------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence                                          233677789999999999999 99999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.5e-40  Score=351.54  Aligned_cols=347  Identities=17%  Similarity=0.183  Sum_probs=262.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCcccccccccccccc-------------------
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLE-------------------   60 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------------   60 (579)
                      ++.+|  .+++|||||++||+|+.||+|+|||+.++  .....+.+|...+..+.|+++-.                   
T Consensus        58 h~~~v--~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd  135 (611)
T 1nr0_A           58 HSHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD  135 (611)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             CCCce--EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence            35678  55599999999999999999999998754  35667888988999888887610                   


Q ss_pred             --------ccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE
Q 008041           61 --------REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI  132 (579)
Q Consensus        61 --------~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  132 (579)
                              .+| ...+.++.|.|..        ...+++|+.|+.|++||..++++...+ .+|...|++++|+|+|++|
T Consensus       136 ~~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~l  205 (611)
T 1nr0_A          136 TGTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLF  205 (611)
T ss_dssp             TCCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEE
T ss_pred             CCCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEE
Confidence                    011 1133445554432        346999999999999999998887655 7899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceeeEee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE---------
Q 008041          133 YSAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK---------  194 (579)
Q Consensus       133 ~s~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~---------  194 (579)
                      ++++.|++|++||+.+++.+..+.       +|.+.|.+++|+|+|++|++++  ++|++||+++++++.+         
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            999999999999999999888884       7999999999999999999998  8999999998765443         


Q ss_pred             ----------------------------------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce--
Q 008041          195 ----------------------------------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--  238 (579)
Q Consensus       195 ----------------------------------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~--  238 (579)
                                                        +.+|...|.+++|+|+|++|++++ .|++|++||+.++......  
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~  364 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPD  364 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSC
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeccc
Confidence                                              357899999999999999999998 7999999998765321000  


Q ss_pred             ----eee-------------------------------------e---------eec-----------------------
Q 008041          239 ----CVL-------------------------------------A---------MEH-----------------------  245 (579)
Q Consensus       239 ----~~~-------------------------------------~---------~~~-----------------------  245 (579)
                          .+.                                     .         +..                       
T Consensus       365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~  444 (611)
T 1nr0_A          365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE  444 (611)
T ss_dssp             SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred             CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence                000                                     0         000                       


Q ss_pred             --CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee--cccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041          246 --PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       246 --~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                        +...+.++.|+     |||++|++|+.||+|++||+.++...  .. ..+...+.+.. |+|+++    .+++++.|+
T Consensus       445 ~~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~-fspdg~----~las~s~d~  513 (611)
T 1nr0_A          445 VPISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA-FSNNGA----FLVATDQSR  513 (611)
T ss_dssp             EECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-ECTTSS----EEEEEETTS
T ss_pred             eecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-ECCCCC----EEEEEcCCC
Confidence              01123455666     99999999999999999998775431  11 11111122222 788888    889999877


Q ss_pred             eecCCceEEEEEeCCCCCceeEE--EecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          322 IVKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .++.++.       .........  ..+|...|.+++|||||++| +|+|.|+++++|++.
T Consensus       514 ~v~~w~~-------~~~~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~  566 (611)
T 1nr0_A          514 KVIPYSV-------ANNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN  566 (611)
T ss_dssp             CEEEEEG-------GGTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred             CEEEEEc-------CCCCceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECC
Confidence            6555431       110111111  23499999999999999999 999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.1e-40  Score=327.33  Aligned_cols=282  Identities=15%  Similarity=0.195  Sum_probs=239.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+||+++||+|+.||+|+|||..++.....+..+...+....|+++                       
T Consensus        63 H~~~V--~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-----------------------  117 (354)
T 2pbi_B           63 HGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-----------------------  117 (354)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-----------------------
T ss_pred             CCCeE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-----------------------
Confidence            45778  66699999999999999999999999999988888766665555555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                          +..+++|+.|+.+++|++....      .. ....+|...|.++.|+|++..+++++.|++|++||+.+++.+..+
T Consensus       118 ----g~~lasg~~d~~i~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          118 ----GCAIACGGLDNKCSVYPLTFDKNENMAAKK-KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             ----SSEEEEESTTSEEEEEECCCCTTCCSGGGC-EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----CCEEEEeeCCCCEEEEEEeccccccccccc-eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence                7889999999999999986531      12 223579999999999999999999999999999999999999999


Q ss_pred             ecCCCCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          156 RASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       156 ~~~~~~v~~l~~~p--~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .+|...|.+++|+|  +|++|++|+  |.|++||+++++++..+.+|...|.+++|+|++.+|++++ .|++|++||++.
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~  271 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA  271 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence            99999999999988  578999988  9999999999999999999999999999999999999988 799999999988


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccc
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      .+..   ..+........+..+.|+     |++.+|++++.||.|++||+.+++.+.                       
T Consensus       272 ~~~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~~-----------------------  320 (354)
T 2pbi_B          272 DREV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRVS-----------------------  320 (354)
T ss_dssp             TEEE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEEE-----------------------
T ss_pred             CcEE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceEE-----------------------
Confidence            7532   222222223345677787     999999999999999999986654321                       


Q ss_pred             hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                      .+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus       321 --------------------------------~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 --------------------------------ILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA  354 (354)
T ss_dssp             --------------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred             --------------------------------EEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence                                            234688899999999999999 9999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.2e-39  Score=347.92  Aligned_cols=325  Identities=14%  Similarity=0.151  Sum_probs=257.0

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..+|  .+++|+|++. .|++|+.|++|++||..++++...+.+|...+.++.|+++                       
T Consensus       147 ~~~v--~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-----------------------  201 (611)
T 1nr0_A          147 ARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-----------------------  201 (611)
T ss_dssp             SSCE--EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCc--eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-----------------------
Confidence            4577  5559999997 5999999999999999999999999988887777777766                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecC------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-  154 (579)
                          +.+|++|+.||.|++||+.+++.+..+..      +|.+.|++++|+|+|++|++++.|++|++||+.+++++.+ 
T Consensus       202 ----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          202 ----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence                78899999999999999999988766633      7999999999999999999999999999999988765443 


Q ss_pred             ------------------------------------------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008041          155 ------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK  190 (579)
Q Consensus       155 ------------------------------------------~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~  190 (579)
                                                                +.+|...|++++|+|+|++|++++  +.|++||+.+++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                                      346888999999999999999998  899999998765


Q ss_pred             eeEEe-e-------------------------------------------------------------------------
Q 008041          191 KMQKF-S-------------------------------------------------------------------------  196 (579)
Q Consensus       191 ~~~~~-~-------------------------------------------------------------------------  196 (579)
                      ....+ .                                                                         
T Consensus       358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~  437 (611)
T 1nr0_A          358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY  437 (611)
T ss_dssp             EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred             eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence            43221 0                                                                         


Q ss_pred             --------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041          197 --------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       197 --------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                              .|...+.+++|+|||+++++++ .|++|++||+......   ..... .+...+..+.|+     |+|++|+
T Consensus       438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~~-~h~~~v~~v~fs-----pdg~~la  507 (611)
T 1nr0_A          438 SHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTI-VHPAEITSVAFS-----NNGAFLV  507 (611)
T ss_dssp             ETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEE-ECSSCEEEEEEC-----TTSSEEE
T ss_pred             eCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeecc-CCCCceEEEEEC-----CCCCEEE
Confidence                    1234567899999999999988 7999999999875422   22233 344556778888     9999999


Q ss_pred             EEEcCCeEEEEEcCC-ceeecc--cCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE
Q 008041          269 AISETGVCYIWYGQN-IEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI  345 (579)
Q Consensus       269 ~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (579)
                      +++.|++|++||+.+ ++.+..  ...+...+.+.. |+|+++    .+++++.|+.++.++.     . .........+
T Consensus       508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~----~lasgs~D~~v~lW~~-----~-~~~~~~~~~~  576 (611)
T 1nr0_A          508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNV----RLATGSLDNSVIVWNM-----N-KPSDHPIIIK  576 (611)
T ss_dssp             EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSS----EEEEEETTSCEEEEET-----T-CTTSCCEEET
T ss_pred             EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCC----EEEEEECCCcEEEEEC-----C-Ccccccchhh
Confidence            999999999999987 554432  111222333333 788888    8999999886665431     1 1011112445


Q ss_pred             ecC-CCCcEEEeecCCcceeeccccceecccceee
Q 008041          346 LVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       346 ~~h-~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      .+| ...|.+++|+|||+ | +|++.|+++++|++
T Consensus       577 ~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          577 GAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV  609 (611)
T ss_dssp             TSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred             ccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence            678 78999999999999 8 99999999999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-38  Score=309.54  Aligned_cols=280  Identities=13%  Similarity=0.208  Sum_probs=234.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.+|  .+++|+|+|++|++|+.||+|+|||+.++.....+..|...+....|+++                        
T Consensus        13 ~~~V--~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------   66 (304)
T 2ynn_A           13 SDRV--KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------------------------   66 (304)
T ss_dssp             CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred             CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC------------------------
Confidence            4678  55599999999999999999999999999999988877766665555554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         +.++++|+.|+.|++||+.+++.+..+ .+|.+.|++++|+|+++++++|+.|++|++||++++ .....+.+|...
T Consensus        67 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~  142 (304)
T 2ynn_A           67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (304)
T ss_dssp             ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred             ---CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence               788999999999999999999988666 689999999999999999999999999999999887 455678999999


Q ss_pred             eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |.+++|+| ++..+++|+  +.|++||++++.....+. +|...+..+.|+|  ++++|++++ .|++|++||+++++  
T Consensus       143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~--  219 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS--  219 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE--
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc--
Confidence            99999999 678899988  899999999887766554 5668899999986  678999988 79999999999875  


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                         ++..+..+...+..+.|+     |++.+|++++.||+|++||..+++.+.                           
T Consensus       220 ---~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~~~---------------------------  264 (304)
T 2ynn_A          220 ---CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEK---------------------------  264 (304)
T ss_dssp             ---EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCEEE---------------------------
T ss_pred             ---cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCceee---------------------------
Confidence               445666677777888887     999999999999999999987765432                           


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc--eeeccccceecccceeee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV--LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~~s~s~d~~~~~w~~~  380 (579)
                                                  .+..|...+.+++|+|+|.  ++ ++|+.|+ +.+|+++
T Consensus       265 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~-asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          265 ----------------------------TLNVGLERSWCIATHPTGRKNYI-ASGFDNG-FTVLSLG  301 (304)
T ss_dssp             ----------------------------EECCSSSSEEEEEECTTCGGGCE-EEEETTE-EEEEECC
T ss_pred             ----------------------------eccCCCccEEEEEECCCCCceEE-EEecCCc-eEEEEec
Confidence                                        2234556788999888875  45 7776554 5666663

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.1e-38  Score=307.83  Aligned_cols=287  Identities=15%  Similarity=0.141  Sum_probs=236.0

Q ss_pred             CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++++|  .+++|+|++ ++|++|+.|++|++||+.+     +..+..+.+|...+..+.|+++                 
T Consensus        16 H~~~V--~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----------------   76 (319)
T 3frx_A           16 HNGWV--TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-----------------   76 (319)
T ss_dssp             CSSCE--EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred             ccceE--EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-----------------
Confidence            46788  555999965 8999999999999999863     3456677777776666666655                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                                +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.++++|+.|++|++||++ ++++..+
T Consensus        77 ----------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~  144 (319)
T 3frx_A           77 ----------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL  144 (319)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred             ----------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence                      788999999999999999999988666 6899999999999999999999999999999985 6778888


Q ss_pred             ecCCCCeeEEEEccCC------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          156 RASTKGISCMAVSSDG------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g------~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .+|...|.++.|+|.+      ..+++++  +.|++||+++++....+.+|...|.+++|+|++++|++++ .|+.|++|
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iw  223 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW  223 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Confidence            9999999999999954      4788887  8999999999999999999999999999999999999988 79999999


Q ss_pred             EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccc
Q 008041          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      |+.+.+.     +..+.++. .+..+.|+     |++.+|++++.+ .+++|+++....+....+.             .
T Consensus       224 d~~~~~~-----~~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~-------------~  278 (319)
T 3frx_A          224 NLAAKKA-----MYTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE-------------F  278 (319)
T ss_dssp             ETTTTEE-----EEEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECCC-------------C
T ss_pred             ECCCCcE-----EEEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc-------------c
Confidence            9998763     34444443 45677787     999999888754 5999998766544322110             0


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .            +                      ....|...+.+++|+|||++| ++|+.|+.+++|++.
T Consensus       279 ~------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          279 A------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM  316 (319)
T ss_dssp             T------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred             c------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence            0            0                      001355678899999999999 999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=316.79  Aligned_cols=290  Identities=11%  Similarity=0.086  Sum_probs=223.9

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  -+++|||||++|++++ |+++++||..    +..+..............   .......+.++.|.+        
T Consensus        31 ~~v--~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--------   92 (344)
T 4gqb_B           31 RQL--EAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNEGFCSA---GVQTEAGVADLTWVG--------   92 (344)
T ss_dssp             SEE--EEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCGGGCSE---EEEESSCEEEEEEET--------
T ss_pred             CCE--EEEEECCCCCEEEEEe-CCceEEeece----eeeeccccccCCcceeee---eeccCCCEEEEEEeC--------
Confidence            456  4559999999999888 7889999732    122221111000000000   001123577888876        


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                        ...+++|+.||.|++||+.+++....   ...+|.+.|++++|+|+|++|++|+.|++|++||+.+++++..+.+|..
T Consensus        93 --d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 --ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             --TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             --CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence              34689999999999999998875322   2358999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCcc
Q 008041          161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 ~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .|++++|+|++. ++++++  +.|++||+++++....+.  .|...+.+++|+|++ +++++++ .|+.|++||+++++.
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC  249 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence            999999999985 677776  899999999999888774  456679999999954 5677776 799999999998764


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                           +..+..+...+.++.|+     |++ ++|++++.||+|++||..+++.+                          
T Consensus       250 -----~~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~--------------------------  293 (344)
T 4gqb_B          250 -----VLSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF--------------------------  293 (344)
T ss_dssp             -----CEEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred             -----EEEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence                 35566667778888888     887 57999999999999997655321                          


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                    .+.+|...|.+++|+|||..+.+|+|.|+++++|++.
T Consensus       294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence                                          1236888999999999998654899999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-37  Score=306.25  Aligned_cols=281  Identities=21%  Similarity=0.301  Sum_probs=236.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+||+..+++....+.+|...+..+.|+++                       
T Consensus        22 h~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   76 (312)
T 4ery_A           22 HTKAV--SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----------------------   76 (312)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             cCCcE--EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-----------------------
Confidence            35678  55599999999999999999999999999998888877665555555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++|+.||.|++||+.+++.+..+ .+|...|.++.|+|+++++++|+.|+.|++||+++++.+..+..|..+
T Consensus        77 ----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  151 (312)
T 4ery_A           77 ----SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP  151 (312)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence                788999999999999999999987666 679999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      |.+++|+|+++++++++  |.|++||+++++.+..+. .+..++..++|+|+++++++++ .|+.|++||+.+++..   
T Consensus       152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---  227 (312)
T 4ery_A          152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL---  227 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---
Confidence            99999999999999998  899999999998887764 5667899999999999999987 7999999999987633   


Q ss_pred             eeeeeecCc---eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          239 CVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       239 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                        ..+..+.   ..+......     +++.+|++++.||.|++||+.+++.+.                           
T Consensus       228 --~~~~~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~---------------------------  273 (312)
T 4ery_A          228 --KTYTGHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ---------------------------  273 (312)
T ss_dssp             --EEECSSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE---------------------------
T ss_pred             --EEEEecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh---------------------------
Confidence              2332221   122223333     678999999999999999987654321                           


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc--ceecccceee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~  379 (579)
                                                  .+.+|...|.+++|+|++.++ ++++  .|+++++|+.
T Consensus       274 ----------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          274 ----------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS  310 (312)
T ss_dssp             ----------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred             ----------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence                                        344688899999999999999 7775  6999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-38  Score=312.30  Aligned_cols=294  Identities=14%  Similarity=0.163  Sum_probs=229.2

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE---eccCccccccccccccccccccccccceEEeeecccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +|  .+++|+|+|++||+|+.|++|+|||+.++.....   ..+|...+.                  ++.|.|.     
T Consensus        18 ~v--~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~------------------~~~~sp~-----   72 (345)
T 3fm0_A           18 RC--WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR------------------KVAWSPC-----   72 (345)
T ss_dssp             CE--EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE------------------EEEECTT-----
T ss_pred             cE--EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE------------------EEEECCC-----
Confidence            67  5669999999999999999999999988864322   234444444                  4555442     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeec
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRA  157 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~  157 (579)
                          +.+|++|+.|+.|++||...+.. ....+.+|...|.+++|+|++++|++|+.|++|++||+.++.   ++..+.+
T Consensus        73 ----g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           73 ----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             ----SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred             ----CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence                78899999999999999987753 223447899999999999999999999999999999998763   4567888


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      |...|.+++|+|++++|++++  +.|++||.++++  +..++.+|...|.+++|+|+|++|++++ .|++|++|+.....
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPG  227 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCC
Confidence            999999999999999999998  899999998875  4578899999999999999999999988 79999999974332


Q ss_pred             cc----------cceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041          234 KQ----------SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       234 ~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      ..          ...++..+. .+...+..+.|+     |++..|++++.|+.|++|+.........  +          
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~--~----------  290 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQ--P----------  290 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTS--C----------
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCcce--e----------
Confidence            11          011222332 244556677787     9999999999999999999764421100  0          


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccceeee
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~  380 (579)
                         .      .               ..          ......+|...|.+++|+|++. +| +|||.|+++++|++.
T Consensus       291 ---~------~---------------~~----------~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          291 ---T------F---------------SL----------TAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             ---C------E---------------EE----------EEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEEC
T ss_pred             ---e------E---------------EE----------EeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEec
Confidence               0      0               00          0001236888999999999985 77 999999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.3e-39  Score=323.90  Aligned_cols=289  Identities=16%  Similarity=0.230  Sum_probs=240.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|+|++|++|+.||+|+|||..+++....+..|...+..+.|+++                       
T Consensus        65 H~~~V--~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  119 (380)
T 3iz6_a           65 HSGKV--YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-----------------------  119 (380)
T ss_dssp             CSSCE--EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-----------------------
T ss_pred             cccEE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-----------------------
Confidence            45788  55699999999999999999999999999999999888877777777766                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                          +.++++|+.|+.|++||+.+...      ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..
T Consensus       120 ----g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          120 ----GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             ----SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             ----CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence                88899999999999999975321      223457899999999999974 5699999999999999999998887


Q ss_pred             e-----ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          155 F-----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       155 ~-----~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      +     .+|...|.+++|+| +++++++|+  +.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ .|++|+
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~  274 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCR  274 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence            7     57888999999987 889999988  899999998 4577889999999999999999999999987 799999


Q ss_pred             EEEcCCCccccceeeeeee-----cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeec
Q 008041          226 LWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (579)
                      +||+++++..   ..+...     .....+..+.|+     |+|++|++|+.||.|++||..+++.+.....        
T Consensus       275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------  338 (380)
T 3iz6_a          275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT--------  338 (380)
T ss_dssp             EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred             EEECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEec--------
Confidence            9999987643   111111     112235677887     9999999999999999999876654321100        


Q ss_pred             cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                                 ...+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus       339 -------------------------------------------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          339 -------------------------------------------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -------------------------------------------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECC
T ss_pred             -------------------------------------------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecC
Confidence                                                       012688899999999999999 999999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-37  Score=331.49  Aligned_cols=314  Identities=20%  Similarity=0.262  Sum_probs=263.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|+|++|++++.|+.|++||. +++....+.+|...+..+.|+++                        
T Consensus       262 ~~~v--~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~------------------------  314 (577)
T 2ymu_A          262 SSSV--NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------  314 (577)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             CCCE--EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC------------------------
Confidence            4567  45599999999999999999999996 57777788877776666666655                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++++.+|.|++||....... .+ .+|...|.+++|+|+|+++++++.|+.|++||. +++.+..+.+|...|
T Consensus       315 ---~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v  388 (577)
T 2ymu_A          315 ---GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  388 (577)
T ss_dssp             ---SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred             ---CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence               788999999999999998766543 33 679999999999999999999999999999994 688889999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|+|++|++++  +.|++||. +++.+.++.+|...|.+++|+|++++|++++ .|+.|++||....      ..
T Consensus       389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~------~~  460 (577)
T 2ymu_A          389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ------LL  460 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC------EE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC------EE
Confidence            9999999999999987  89999995 6778889999999999999999999999988 7999999996543      23


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ..+..+...+.++.|+     |++++|++++.|+.|++||. +++.+..+..+...+.+.. |+|+++    .+++++.|
T Consensus       461 ~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~-~s~dg~----~l~s~~~d  529 (577)
T 2ymu_A          461 QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD  529 (577)
T ss_dssp             EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSS----CEEEEETT
T ss_pred             EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE-EcCCCC----EEEEEECc
Confidence            4455566677888888     99999999999999999995 5666655544433333333 688887    88999988


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      +.++.++         ........+.+|...|.+++|+|||++| +|+|.|+++++|+
T Consensus       530 g~v~lwd---------~~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          530 KTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN  577 (577)
T ss_dssp             SEEEEEC---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             CEEEEEe---------CCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence            7666543         2345677888999999999999999999 9999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-37  Score=313.73  Aligned_cols=302  Identities=16%  Similarity=0.230  Sum_probs=235.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccc-ccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSL-YGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|||||++||+|+ +++++||++.+++.+..+..+........ +... ........+.++.|.+.    
T Consensus        63 h~~~V--~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~s~d----  134 (393)
T 1erj_A           63 HTSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS-SSPSSDLYIRSVCFSPD----  134 (393)
T ss_dssp             CSSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTT----
T ss_pred             CCCEE--EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccccccc-ccCCCceeEEEEEECCC----
Confidence            35678  5569999999999987 78999999999999888765542211000 0000 00011223667888764    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +.++++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++||++++++...+. +..
T Consensus       135 -----g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  207 (393)
T 1erj_A          135 -----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IED  207 (393)
T ss_dssp             -----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             -----CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence                 778999999999999999999887665 6899999999999999999999999999999999999888776 556


Q ss_pred             CeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEe-------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       161 ~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      .+.+++|+| +++++++++  +.|++||+++++.+..+       .+|...|.+++|+|++++|++++ .|+.|++||++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~  286 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQ  286 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC-
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECC
Confidence            899999999 899999998  89999999999887776       57999999999999999999988 79999999998


Q ss_pred             CCccc-------cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCC
Q 008041          231 GVKKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (579)
Q Consensus       231 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (579)
                      .....       ...+...+..+...+..+.++     |++.+|++++.||.|++||..+++.+.               
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~---------------  346 (393)
T 1erj_A          287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL---------------  346 (393)
T ss_dssp             --------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred             CCCCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE---------------
Confidence            65321       012334444555566777787     899999999999999999987654321               


Q ss_pred             cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC------Ccceeeccccceecccce
Q 008041          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~~s~s~d~~~~~w  377 (579)
                                                              .+.+|...|.+++|++      ++.++ +|||.|+++++|
T Consensus       347 ----------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW  385 (393)
T 1erj_A          347 ----------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIW  385 (393)
T ss_dssp             ----------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEE
T ss_pred             ----------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEEC
Confidence                                                    2346777788888775      78899 999999999999


Q ss_pred             eee
Q 008041          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      ++.
T Consensus       386 ~~~  388 (393)
T 1erj_A          386 KYK  388 (393)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-38  Score=317.51  Aligned_cols=285  Identities=12%  Similarity=0.106  Sum_probs=219.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeC------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++++|+  +++|||||++||+|+.      |+.|++|+..++.....+...             ..+| ...+.++.|.+
T Consensus        41 H~~~V~--~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------~~~~-~~~V~~~~~s~  104 (357)
T 4g56_B           41 MEVQIG--AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------GVQT-EAGVTDVAWVS  104 (357)
T ss_dssp             CCSEEE--EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------EEEC-SSCEEEEEEET
T ss_pred             ccCCEE--EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------cCCC-CCCEEEEEEcC
Confidence            356684  4599999999999997      678889988776543222100             0112 23467788876


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  152 (579)
                      .          ..+++++.+|.|++||+.+++....   ...+|...|++++|+|++++|++|+.|+.|++||+.+++.+
T Consensus       105 d----------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B          105 E----------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             T----------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             C----------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            3          3467889999999999998875321   22479999999999999999999999999999999999999


Q ss_pred             eEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCC-CEEEEEecCCCeEEE
Q 008041          153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNG-KYVLSSAVGERYIAL  226 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~v  226 (579)
                      ..+.+|...|++++|+|++. ++++++  +.|++||+++++.+..+  ..|...+.+++|+|++ .+|++++ .|+.|++
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~  253 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSL  253 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeE
Confidence            99999999999999999885 666666  89999999998876654  4567889999999985 5666666 7999999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcc
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ||+++++..     ..+..+...+.++.|+     |++ ++|++++.||+|+|||+++++.+.                 
T Consensus       254 wd~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~~-----------------  306 (357)
T 4g56_B          254 VNIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVFR-----------------  306 (357)
T ss_dssp             EESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEEE-----------------
T ss_pred             EECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEeE-----------------
Confidence            999987643     4555666677788887     876 579999999999999987654321                 


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceecccceeee
Q 008041          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                             ..+|...|.+++|+| ||.+| +|+|.|+++++|++.
T Consensus       307 ---------------------------------------~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          307 ---------------------------------------DLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ---------------------------------------ECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred             ---------------------------------------ECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence                                                   125788999999998 89999 999999999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.2e-36  Score=299.68  Aligned_cols=292  Identities=14%  Similarity=0.132  Sum_probs=226.4

Q ss_pred             CCCcccceEEEE-----cc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCcccccccccccccccccccccc
Q 008041            2 GSSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDY   68 (579)
Q Consensus         2 ~~~~V~~l~~~f-----sp-dg~~lasg~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (579)
                      ++++|  .+++|     +| |+++|++|+.|++|+|||+.++       .....+.+|...+.++.|+++          
T Consensus        20 H~~~V--~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~----------   87 (343)
T 2xzm_R           20 HSDWV--TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE----------   87 (343)
T ss_dssp             CSSCE--EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----------
T ss_pred             chhhh--hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----------
Confidence            45778  44488     76 9999999999999999998753       455666666665555555544          


Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008041           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~  148 (579)
                                       +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+++++++++.|++|++||+. 
T Consensus        88 -----------------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-  148 (343)
T 2xzm_R           88 -----------------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-  148 (343)
T ss_dssp             -----------------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-
T ss_pred             -----------------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-
Confidence                             788999999999999999999987666 6899999999999999999999999999999987 


Q ss_pred             CceeeEee---cCCCCeeEEEEccCC----------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCE
Q 008041          149 GSLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       149 ~~~~~~~~---~~~~~v~~l~~~p~g----------~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~  213 (579)
                      +.......   .|...|.+++|+|++          .++++++  +.|++|| .+.+....+.+|...|.+++|+|+|++
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence            43333333   678899999999987          6888887  9999999 456777889999999999999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       214 l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      |++++ .|+.|++||+......    ...+.+. ..+..+.|+     |++.++++ +.|+.|++||+.+++.....   
T Consensus       228 l~sgs-~dg~v~iwd~~~~~~~----~~~~~~~-~~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~---  292 (343)
T 2xzm_R          228 IATGG-KDKKLLIWDILNLTYP----QREFDAG-STINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC---  292 (343)
T ss_dssp             EEEEE-TTCEEEEEESSCCSSC----SEEEECS-SCEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE---
T ss_pred             EEEEc-CCCeEEEEECCCCccc----ceeecCC-CcEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE---
Confidence            99998 7999999999544322    1222222 336778887     89887764 56888999998876543200   


Q ss_pred             eEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008041          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~  373 (579)
                        ..      ...      .+.  .                       .....+|...+.+++|+|||.+| ++|+.|++
T Consensus       293 --~~------~~~------~~~--~-----------------------~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~  332 (343)
T 2xzm_R          293 --TI------EAE------PIT--K-----------------------AEGQKGKNPQCTSLAWNALGKKL-FAGFTDGV  332 (343)
T ss_dssp             --EC------CCC------SGG--G-----------------------BTTBCCSCCCEEEEEECSSSCCE-EEEETTSE
T ss_pred             --Ee------ecC------cch--h-----------------------hhhhcCCCCceEEEEECCCCCeE-EEecCCce
Confidence              00      000      000  0                       00123577789999999999999 99999999


Q ss_pred             ccceeee
Q 008041          374 KRGRYVQ  380 (579)
Q Consensus       374 ~~~w~~~  380 (579)
                      +++|++.
T Consensus       333 v~~w~~~  339 (343)
T 2xzm_R          333 IRTFSFE  339 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-37  Score=312.95  Aligned_cols=339  Identities=15%  Similarity=0.233  Sum_probs=255.3

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEeccCccccccccccccccccccccccceE
Q 008041            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++|  .+++|+|+|+ +||+|+.||.|++||+    .+++      ....+.......        ...++....++++
T Consensus        45 ~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~  114 (425)
T 1r5m_A           45 LDNI--VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS--------ASSGKTTNQVTCL  114 (425)
T ss_dssp             CSCC--SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEE
T ss_pred             cCce--EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc--------ccccCCCCceEEE
Confidence            3678  5559999999 9999999999999999    8887      344433210000        0001123467777


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008041           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~  151 (579)
                      .|.+.         +.+|++|+.+|.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       115 ~~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          115 AWSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             EECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             EEcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            88763         78899999999999999 566666555 67999999999999999999999999999999999999


Q ss_pred             eeEeecCCCC---------------eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041          152 LGKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       152 ~~~~~~~~~~---------------v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      +..+..+...               +.+++|+|++.+++.+. |.|++||+++++.+..+.+|...|.+++|+|++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            9988877776               99999999876444444 9999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      +++ .|+.|++||+...+..     ..+..+...+..+.|+     |++ ++++++.||.|++||+.+++.+........
T Consensus       264 ~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  331 (425)
T 1r5m_A          264 SAS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV  331 (425)
T ss_dssp             EEE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEc-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence            987 7999999999987643     3444455567778887     888 999999999999999999887765544332


Q ss_pred             EeeeccCCcccccccchhhhhccccceecCCceEEEE-----EeCC-------CCCceeEEEecCCC--CcEEEeecCCc
Q 008041          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYGL-------LLKPSFQKILVNSG--EDINLNCSQDG  361 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~g~-------~~~~~~~~~~~h~~--~v~~~~~s~dg  361 (579)
                      .+.+.. ++++++    .+++++.++.++.++..-..     ..+.       ........+.+|..  .|.+++|+|||
T Consensus       332 ~i~~~~-~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          332 PIFAGR-ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             CEEEEE-ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             cEEEEE-EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence            222222 566766    78888887765554321000     0000       00125667788876  99999999999


Q ss_pred             ceeeccccceecccceeee
Q 008041          362 VLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       362 ~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+| ++++.|+.+++|++.
T Consensus       407 ~~l-~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          407 NKI-SVAYSLQEGSVVAIP  424 (425)
T ss_dssp             SEE-EEEESSSCCEEEECC
T ss_pred             ceE-EEEecCceEEEEeec
Confidence            999 999999999999873

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=298.60  Aligned_cols=287  Identities=14%  Similarity=0.144  Sum_probs=214.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cc-CccccccccccccccccccccccceEEeeecc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEF-AD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      ++++|  .+++|+|+  +||+|+.|++|++||+.++  .....+ .+ |...+.                  ++.|.|. 
T Consensus        13 h~~~v--~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~------------------~v~~sp~-   69 (330)
T 2hes_X           13 YKEKI--WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR------------------SVAWRPH-   69 (330)
T ss_dssp             CSSCE--EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE------------------EEEECTT-
T ss_pred             CCCce--eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE------------------EEEECCC-
Confidence            45788  55599987  9999999999999999875  344444 22 444444                  4455442 


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccC-------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--
Q 008041           78 RKKKRKLGSSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--  148 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--  148 (579)
                              +.+|++|+.|+.|++||+..       .+.. ..+.+|...|++++|+|+|++|++|+.|++|++||+..  
T Consensus        70 --------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           70 --------TSLLAAGSFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             --------SSEEEEEETTSCEEEEEC-------CCCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred             --------CCEEEEEeCCCcEEEEEcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence                    78899999999999999853       2333 33478999999999999999999999999999999943  


Q ss_pred             --CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEecC--CCEEEEEecC
Q 008041          149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG  220 (579)
Q Consensus       149 --~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~~  220 (579)
                        .+++..+.+|...|.+++|+|++++|++++  +.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++ .
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~  219 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-D  219 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-T
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-C
Confidence              256778899999999999999999999998  89999999876  678889999999999999998  66888887 7


Q ss_pred             CCeEEEEEcCCCcccc---ceeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041          221 ERYIALWRTDGVKKQS---ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      |++|++||+.......   ..+...+.. +...+..+.|+     +++ +|++++.||.|++||..+++..         
T Consensus       220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~-~l~s~~~dg~v~iw~~~~~~~~---------  284 (330)
T 2hes_X          220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FNG-LIASVGADGVLAVYEEVDGEWK---------  284 (330)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TTS-CEEEEETTSCEEEEEEETTEEE---------
T ss_pred             CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CCC-EEEEEeCCCEEEEEEcCCCceE---------
Confidence            9999999987642110   112223322 45566777786     554 7999999999999996543210         


Q ss_pred             eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC-CcEEEeecC--Ccceeeccccceec
Q 008041          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKS  373 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~--dg~~l~~s~s~d~~  373 (579)
                      ..                                           .....+|.. .|.+++|+|  ||.+| +|||.|++
T Consensus       285 ~~-------------------------------------------~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~  320 (330)
T 2hes_X          285 VF-------------------------------------------AKRALCHGVYEINVVKWLELNGKTIL-ATGGDDGI  320 (330)
T ss_dssp             EE-------------------------------------------EEESCTTTTSCEEEEEEC-----CCE-EEEETTSE
T ss_pred             EE-------------------------------------------eccccccccceEEEEEEecCCCceEE-EEecCCCc
Confidence            00                                           001124665 789999999  78999 99999999


Q ss_pred             ccceeee
Q 008041          374 KRGRYVQ  380 (579)
Q Consensus       374 ~~~w~~~  380 (579)
                      +++|++.
T Consensus       321 v~~W~~~  327 (330)
T 2hes_X          321 VNFWSLE  327 (330)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEec
Confidence            9999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.2e-36  Score=319.41  Aligned_cols=316  Identities=21%  Similarity=0.249  Sum_probs=259.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|||++|++++.|+.|++||. +++.+..+.+|...+..+.|+++                        
T Consensus       221 ~~~v--~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d------------------------  273 (577)
T 2ymu_A          221 SSSV--RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD------------------------  273 (577)
T ss_dssp             SSCE--EEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             CCCE--EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC------------------------
Confidence            4667  45599999999999999999999996 57778888877776666666555                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++++.++.|++||.. ++....+ .+|...|++++|+|+++++++++.|+.|++||+. +..+..+.+|...+
T Consensus       274 ---~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v  347 (577)
T 2ymu_A          274 ---GQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV  347 (577)
T ss_dssp             ---SSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred             ---CCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence               7889999999999999975 4444344 6899999999999999999999999999999975 56677888899999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|+|+++++++  +.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||....      ..
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~------~~  419 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ------LL  419 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC------EE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC------EE
Confidence            9999999999999988  89999995 6778889999999999999999999999988 7999999996432      23


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ..+..+...+..+.|+     |++++|++++.||.|++||.. ++.+....+....+.+.. ++++++    .+++++.|
T Consensus       420 ~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~-~spd~~----~las~~~d  488 (577)
T 2ymu_A          420 QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD  488 (577)
T ss_dssp             EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE-ECTTSC----EEEEEETT
T ss_pred             EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE-EcCCCC----EEEEEeCC
Confidence            4455556667778887     999999999999999999964 444444433333333322 678877    88888887


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +.++.++         ........+.+|...|.+++|+|||++| ++++.|+++++|+..
T Consensus       489 ~~i~iw~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          489 KTVKLWN---------RNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN  538 (577)
T ss_dssp             SEEEEEE---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred             CEEEEEc---------CCCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence            7655432         2345667888999999999999999999 999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=292.28  Aligned_cols=239  Identities=21%  Similarity=0.316  Sum_probs=214.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|++.++++|+.|++|++||+.+++.+..+..+...+..+.|+++                        
T Consensus        80 ~~~v--~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd------------------------  133 (321)
T 3ow8_A           80 QLGV--VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD------------------------  133 (321)
T ss_dssp             SSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT------------------------
T ss_pred             CCCE--EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC------------------------
Confidence            4567  56699999999999999999999999999999888766655555555554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.++++|+.+|.|++||+.+++....+ ..|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|..+|
T Consensus       134 ---g~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v  209 (321)
T 3ow8_A          134 ---SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI  209 (321)
T ss_dssp             ---SSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred             ---CCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence               788999999999999999999887665 5688899999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|++++|++++  +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||+.+++     ++
T Consensus       210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~-----~~  283 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRT-----CV  283 (321)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE-----EE
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCE-----EE
Confidence            9999999999999998  8999999999999999999999999999999999999988 79999999998876     34


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ..+..+...+..+.|+     |++.+|++++.||+|++||.+
T Consensus       284 ~~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          284 HTFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred             EEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence            5555566667788887     999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-35  Score=300.87  Aligned_cols=239  Identities=18%  Similarity=0.255  Sum_probs=214.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|+|++|++|+.||+|+|||+.+++++..+.+|...+.++.|+++                       
T Consensus       149 h~~~V--~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~-----------------------  203 (410)
T 1vyh_C          149 HTDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-----------------------  203 (410)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred             cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC-----------------------
Confidence            45678  55599999999999999999999999999999988877766666555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++|+.|+.|++||+.++.++..+ .+|...|.++.|+|++.++++|+.|++|++||+.++++...+.+|...
T Consensus       204 ----~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~  278 (410)
T 1vyh_C          204 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  278 (410)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence                788999999999999999999988666 689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccC--------------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041          162 ISCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~--------------------g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      |.+++|+|+                    |.++++|+  +.|++||+++++++.++.+|...|.+++|+|++++|++++ 
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-  357 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-  357 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-
Confidence            999999996                    66899888  8999999999999999999999999999999999999988 


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .|+.|++||+.+++.     +..+..+...+.++.|+     |++.+|++|+.||+|++|++
T Consensus       358 ~D~~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          358 DDKTLRVWDYKNKRC-----MKTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             TTTEEEEECCTTSCC-----CEEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred             CCCeEEEEECCCCce-----EEEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence            799999999987763     34555666677888888     99999999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-36  Score=310.26  Aligned_cols=321  Identities=13%  Similarity=0.130  Sum_probs=242.5

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++|+|+|++|++|+.||.|++||..+++....+..+                    ...++.+++.+        +.+++
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~--------~~~l~  113 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--------------------DYTAVDTAKLQ--------MRRFI  113 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--------------------CEEEEEEECSS--------SCEEE
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--------------------CceEEEEEecC--------CCEEE
Confidence            499999999999999999999999876543322211                    22333333332        77899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +|+.+|.|++||+.+++....+ .+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus       114 ~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          114 LGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR  192 (420)
T ss_dssp             EEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred             EEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence            9999999999999998886544 689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEE---------------------EecCCCEEEEEecCCCeE
Q 008041          171 GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~---h~~~v~~l~---------------------~s~~~~~l~s~~~~d~~i  224 (579)
                      +++|++++  +.|++||+++++.+..+..   |...+.++.                     |+|+++++++++ .|+.|
T Consensus       193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  271 (420)
T 3vl1_A          193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVI  271 (420)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCE
T ss_pred             CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeE
Confidence            99999988  8999999999999988875   344455554                     568899999887 79999


Q ss_pred             EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCcee-ecccCC-eeEEeeecc
Q 008041          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTKA-TKILSSSED  301 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~  301 (579)
                      ++||+++++..   . .....+...+.++.|+     |++. +|++++.||.|++||+.+++. +..... ....+.+. 
T Consensus       272 ~i~d~~~~~~~---~-~~~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-  341 (420)
T 3vl1_A          272 TVHNVFSKEQT---I-QLPSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-  341 (420)
T ss_dssp             EEEETTTCCEE---E-EECCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred             EEEECCCCcee---E-EcccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence            99999887633   1 1223345567778887     8988 999999999999999988743 222211 11111111 


Q ss_pred             CCcccccccchhhhhccccceecCCceEEEEEeCCCC-----CceeEEEecCCCCcEEEeecCCcc---eeeccccceec
Q 008041          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-----KPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKS  373 (579)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~  373 (579)
                       +.++++    .+++++.|+.++.++..    .+...     ......+..|...+.+++|+|||.   .+ ++.+.++.
T Consensus       342 -~~~~~~----~l~s~~~d~~v~iw~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~  411 (420)
T 3vl1_A          342 -YFAAGA----LFVSSGFDTSIKLDIIS----DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNF  411 (420)
T ss_dssp             -EEETTE----EEEEETTTEEEEEEEEC----CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTE
T ss_pred             -EeCCCC----EEEEecCCccEEEEecc----CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEcCCce
Confidence             133444    78888887755554311    11111     122334667888999999999999   66 44445889


Q ss_pred             ccceeeee
Q 008041          374 KRGRYVQN  381 (579)
Q Consensus       374 ~~~w~~~~  381 (579)
                      +.+|++.+
T Consensus       412 ~~~~~~~~  419 (420)
T 3vl1_A          412 CALYNLSN  419 (420)
T ss_dssp             EEEEESCC
T ss_pred             EEEEeccC
Confidence            99998853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.9e-35  Score=292.71  Aligned_cols=319  Identities=11%  Similarity=0.058  Sum_probs=246.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|||||++++++..++.+.+|+...........+|...+.++.|+++                        
T Consensus         9 ~~~v--~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------------   62 (337)
T 1gxr_A            9 SKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP------------------------   62 (337)
T ss_dssp             EEEC--CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSS------------------------
T ss_pred             CCce--eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecC------------------------
Confidence            4567  55599999999999888777777765554444444455555554444443                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR  156 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~  156 (579)
                         +.++++++ +|.|++||+.+++....+    ..+|...|.+++|+|+++++++++.|+.|++||+.+++  ....+.
T Consensus        63 ---~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  138 (337)
T 1gxr_A           63 ---TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT  138 (337)
T ss_dssp             ---SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred             ---CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence               77788888 999999999876532221    12689999999999999999999999999999999887  566788


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .|...|.+++|+|+++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|++||+++++.
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQ  217 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCce
Confidence            8999999999999999999987  8999999999999999999999999999999999999988 799999999998763


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      .     ....+.. .+..+.|+     |++.++++++.||.|++||+.+++.... ......+.... ++++++    .+
T Consensus       218 ~-----~~~~~~~-~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~----~l  280 (337)
T 1gxr_A          218 L-----QQHDFTS-QIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLK-FAYCGK----WF  280 (337)
T ss_dssp             E-----EEEECSS-CEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEE-ECTTSS----EE
T ss_pred             E-----eeecCCC-ceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEEE-ECCCCC----EE
Confidence            3     3333433 45667777     9999999999999999999988765432 22221222222 566666    78


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      ++++.++.++.++        ....... ....|...+.+++|+|||.++ ++++.|+.+++|++
T Consensus       281 ~~~~~dg~i~~~~--------~~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          281 VSTGKDNLLNAWR--------TPYGASI-FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEE--------TTTCCEE-EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred             EEecCCCcEEEEE--------CCCCeEE-EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence            8888776554432        1122222 234588899999999999999 99999999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=288.62  Aligned_cols=294  Identities=14%  Similarity=0.139  Sum_probs=232.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+|||+.+++....+.+|...+.++.|+++                       
T Consensus        31 h~~~v--~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   85 (369)
T 3zwl_B           31 HERPL--TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-----------------------   85 (369)
T ss_dssp             CSSCE--EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             eeceE--EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-----------------------
Confidence            45788  55599999999999999999999999999999998877766665555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc------
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------  150 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~------  150 (579)
                          +.++++++.||.|++||+.+++.+..+.  |..+|.+++|+|+++++++++.+     +.|++||+..+.      
T Consensus        86 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           86 ----TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             ----SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence                7889999999999999999999887764  88899999999999999999999     999999987653      


Q ss_pred             -----eeeEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041          151 -----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       151 -----~~~~~~~~~~--~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                           ....+..|..  .+.+++|+|+++++++++  |.|++||+++ ++.+..+..|...|.+++|+|++++|++++ .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  238 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-R  238 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-C
Confidence                 3444555666  999999999999999987  8999999998 788899999999999999999999999987 7


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeec
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (579)
                      |+.|++||+.+.+..     ..+. ....+..+.++     |++.++++++.++...+|........     ...     
T Consensus       239 d~~i~v~d~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~i-----  297 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVL-----KKYE-TDCPLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-----FEA-----  297 (369)
T ss_dssp             TSEEEEEETTTCCEE-----EEEE-CSSCEEEEEEC-----SSSSEEEEEECCC------------------CEE-----
T ss_pred             CceEEEEECCCCcee-----eeec-CCCCceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-----cee-----
Confidence            999999999987633     3343 33445667777     99999999999986555543211100     000     


Q ss_pred             cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                    .+ +..........+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus       298 ------------------------------~~-~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          298 ------------------------------RF-YHKIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFE  345 (369)
T ss_dssp             ------------------------------EE-EETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEEC
T ss_pred             ------------------------------EE-EecCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECc
Confidence                                          00 1111122233556788899999999999999 999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.6e-34  Score=283.36  Aligned_cols=289  Identities=16%  Similarity=0.214  Sum_probs=231.3

Q ss_pred             CCCcccceEEEEccC-CCEEEEEeCCCcEEEEECCCCe-----EEEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++++|  .+++|+|+ +++||||+.||+|+|||+.+++     +...+.+|...+.++.|+++                 
T Consensus        37 H~~~V--~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-----------------   97 (340)
T 4aow_A           37 HNGWV--TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-----------------   97 (340)
T ss_dssp             CSSCE--EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-----------------
T ss_pred             ccCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-----------------
Confidence            46789  45599998 6899999999999999987643     45666666666655555554                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eE
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GK  154 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~  154 (579)
                                +.++++++.||.|++|+...+...... ..+...+....++++++++++++.|+.+++||+...... ..
T Consensus        98 ----------g~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~  166 (340)
T 4aow_A           98 ----------GQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ  166 (340)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ----------CCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence                      788999999999999999998877555 457888999999999999999999999999998765443 34


Q ss_pred             eecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          155 FRASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      ..+|...+.+++|++++  .++++++  +.|++||+++++.+..+.+|.++|++++|+|++++|++++ .|+.|++||++
T Consensus       167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~  245 (340)
T 4aow_A          167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLN  245 (340)
T ss_dssp             SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETT
T ss_pred             eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEec
Confidence            66788899999999875  4566666  8999999999999999999999999999999999999988 79999999999


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccccc
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      +.+.     +..+.++. .+..+.++     |++. +++++.||.|++||++++..+...+....               
T Consensus       246 ~~~~-----~~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------  298 (340)
T 4aow_A          246 EGKH-----LYTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------  298 (340)
T ss_dssp             TTEE-----EEEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-----------------
T ss_pred             cCce-----eeeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------
Confidence            8763     34444443 45667776     7765 55667799999999987765543321100               


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                     .....+|...|.+++|+|||++| ++|+.|+++++|++.
T Consensus       299 -------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          299 -------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ------------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred             -------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCC
Confidence                                           00223688899999999999999 999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-36  Score=308.32  Aligned_cols=329  Identities=11%  Similarity=0.114  Sum_probs=248.0

Q ss_pred             cccceEEEEccCCC-EEEEE----------eCCCcEEEEECCCCeEE---EEeccCccccccccccccccccccccccce
Q 008041            5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQVQ---TEFADIASTETTSLYGNRLEREHLSVDYTC   70 (579)
Q Consensus         5 ~V~~l~~~fspdg~-~lasg----------~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (579)
                      +|  .+++|+|+|+ +||+|          +.||.|+|||+.++...   ..+ .|                  ...+.+
T Consensus        14 ~v--~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~------------------~~~v~~   72 (416)
T 2pm9_A           14 RT--ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QV------------------DSKFND   72 (416)
T ss_dssp             ES--CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CC------------------SSCEEE
T ss_pred             hc--ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ec------------------CCceEE
Confidence            45  4459999997 99999          88999999999877532   111 12                  235667


Q ss_pred             EEeeecccccccccCCcEEEEEECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEe
Q 008041           71 MKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEID  145 (579)
Q Consensus        71 ~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd  145 (579)
                      +.|.+.         +.+|++|+.+|.|++||+.+    .+.+.. ..+|...|++++|+|+ ++++++++.|+.|++||
T Consensus        73 ~~~s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           73 LDWSHN---------NKIIAGALDNGSLELYSTNEANNAINSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             EEECSS---------SSCEEEEESSSCEEEECCSSTTSCCCEEEE-CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             EEECCC---------CCeEEEEccCCeEEEeecccccccccchhh-ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            777553         67899999999999999988    334434 4689999999999998 88999999999999999


Q ss_pred             CCCCc------eeeE---eecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------CCCEEEEEE
Q 008041          146 PLTGS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTF  207 (579)
Q Consensus       146 ~~~~~------~~~~---~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h------~~~v~~l~~  207 (579)
                      +.+++      ....   +..|...|.+++|+|+ +.++++++  +.|++||+++++.+..+..|      ...|.+++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW  222 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence            99876      3332   4678889999999999 78899988  89999999999999888776      789999999


Q ss_pred             ecCC-CEEEEEecCCC---eEEEEEcCCCccccceeeeeee-cCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEc
Q 008041          208 SDNG-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       208 s~~~-~~l~s~~~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~  281 (579)
                      +|++ .++++++ .|+   .|++||+++....    ...+. .+...+..+.|+     | ++.+|++++.||.|++||+
T Consensus       223 ~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          223 HPKNSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CSSCTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECS
T ss_pred             CCCCCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeC
Confidence            9997 5777776 688   9999999986422    22333 445566777787     8 8999999999999999999


Q ss_pred             CCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCC-------------------------
Q 008041          282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL-------------------------  336 (579)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~-------------------------  336 (579)
                      .+++.+.....+...+.+.. +++++..   .+++++.|+.++.++..-......                         
T Consensus       293 ~~~~~~~~~~~~~~~v~~~~-~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFKTK-FAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK  368 (416)
T ss_dssp             SSCCEEEEEECSSSCCCCEE-ECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred             CCCccceeecCCCCceEEEE-ECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence            99988766554433333322 5666631   788888887666543210000000                         


Q ss_pred             ---CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          337 ---LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       337 ---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                         ....+ .....|...+..++|+|||++| ++++.|+++++|++.
T Consensus       369 ~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          369 EKPSVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNPK  413 (416)
T ss_dssp             SCCCSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCCC
T ss_pred             cccccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEec
Confidence               00000 1112266678899999999999 999999999999884

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-34  Score=315.87  Aligned_cols=299  Identities=18%  Similarity=0.204  Sum_probs=232.1

Q ss_pred             CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++.+|  .+++|+|++ ++|++|+.||+|+|||+.+     +.....+.+|...+.++.|+++                 
T Consensus       381 H~~~V--~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----------------  441 (694)
T 3dm0_A          381 HTDMV--TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-----------------  441 (694)
T ss_dssp             CSSCE--EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred             CCcee--EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-----------------
Confidence            56788  555999875 7999999999999999875     3455667777766666555555                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                                +.++++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||+.........
T Consensus       442 ----------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          442 ----------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ----------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence                      788999999999999999999988666 689999999999999999999999999999998654333222


Q ss_pred             ---ecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          156 ---RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       156 ---~~~~~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                         .+|...|.+++|+|++  ..+++++  +.|++||+++++...++.+|.+.|++++|+|++++|++++ .|+.|++||
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd  589 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWD  589 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEE
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Confidence               4578899999999987  5788887  8999999999999999999999999999999999999988 799999999


Q ss_pred             cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccc
Q 008041          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (579)
                      +.+++..     ..+.++ ..+.+++|+     |++.++++++ |+.|++||+.+++.+...........         .
T Consensus       590 ~~~~~~~-----~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------~  648 (694)
T 3dm0_A          590 LAEGKKL-----YSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------E  648 (694)
T ss_dssp             TTTTEEE-----ECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred             CCCCceE-----EEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------c
Confidence            9987633     344343 356778887     8988877665 56799999999877654432110000         0


Q ss_pred             ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                             .....+                    ......+...+.+++|||||.+| +||+.|+++++|++.
T Consensus       649 -------~~~~~~--------------------~~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          649 -------KADNSG--------------------PAATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ---------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred             -------cccccc--------------------cccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence                   000000                    00011233357889999999999 999999999999984

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-34  Score=291.70  Aligned_cols=318  Identities=11%  Similarity=0.035  Sum_probs=237.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++|+|+|++||+|+.||.|+|||..+++  ....+.+|...+..+.|+++                     
T Consensus         7 ~~~~i--~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------------------   63 (372)
T 1k8k_C            7 LVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---------------------   63 (372)
T ss_dssp             CSSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---------------------
T ss_pred             cCCCe--EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---------------------
Confidence            46788  555999999999999999999999999987  77777766655554444443                     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeE-
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK-  154 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~-  154 (579)
                            +.++++++.+|.|++||+.+++..... ...|...|.+++|+|+++++++++.|+.|++||+..++.   ... 
T Consensus        64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence                  788999999999999999998754333 357999999999999999999999999999999988763   233 


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC------------------CCCeeeEEeecCCCCEEEEEEecCCCEE
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~------------------~~~~~~~~~~~h~~~v~~l~~s~~~~~l  214 (579)
                      ...|...|.+++|+|+++++++++  |.|++||+                  ..++.+..+.+|...|.+++|+|++++|
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  217 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  217 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence            356788999999999999999987  89999995                  4678888999999999999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC--ce--eeccc
Q 008041          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT  290 (579)
Q Consensus       215 ~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~  290 (579)
                      ++++ .|+.|++||+++++.     +..+..+...+..+.|+     |++.+++++ .||.|++|++.+  ++  .+...
T Consensus       218 ~~~~-~d~~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          218 AWVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EEEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred             EEEe-CCCEEEEEECCCCce-----eEEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence            9988 799999999988763     34555566667778887     899988877 999999999987  53  22222


Q ss_pred             CCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE-ecCCCCcEEEeec-CCc---ceee
Q 008041          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI-LVNSGEDINLNCS-QDG---VLLP  365 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~h~~~v~~~~~s-~dg---~~l~  365 (579)
                      .........       ..... .+.. ..+     ..+...   +... .. ..+ .+|...|.+++|. ++|   .+| 
T Consensus       286 ~~~~~~~~~-------~~~~~-~~~~-~~~-----~~~~~~---~~~~-~~-~~~~~~h~~~v~~~~~~~~~g~~~~~l-  345 (372)
T 1k8k_C          286 DVPKQSSQR-------GLTAR-ERFQ-NLD-----KKASSE---GSAA-AG-AGLDSLHKNSVSQISVLSGGKAKCSQF-  345 (372)
T ss_dssp             CCC---------------CHH-HHHH-HCC-----CCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEE-
T ss_pred             Cccccchhh-------hcchh-hhhh-hcc-----cccccc---cCcc-cc-ccccccccCCcceeEEecCCCcceeeE-
Confidence            111110000       00000 0000 000     000000   0000 00 112 3799999999855 787   899 


Q ss_pred             ccccceecccceeee
Q 008041          366 MSQSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~  380 (579)
                      +|++.|+++++|++.
T Consensus       346 ~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          346 CTTGMDGGMSIWDVR  360 (372)
T ss_dssp             EEEETTSEEEEEEHH
T ss_pred             EEecCCCceEEEEec
Confidence            999999999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-34  Score=280.92  Aligned_cols=249  Identities=14%  Similarity=0.077  Sum_probs=209.1

Q ss_pred             EEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC
Q 008041           40 QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG  119 (579)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~  119 (579)
                      ..++.+|...+.++.|+++                           +.++++|+.||.|++||+.++..+..+ ..|..+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~---------------------------~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~   57 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPT---------------------------EPWVLTTLYSGRVELWNYETQVEVRSI-QVTETP   57 (304)
T ss_dssp             EEEEEEECSCEEEEEECSS---------------------------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSC
T ss_pred             EEeecCCCCceEEEEECCC---------------------------CCEEEEEcCCCcEEEEECCCCceeEEe-eccCCc
Confidence            4556666666666666655                           788999999999999999999887666 679999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEee
Q 008041          120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFS  196 (579)
Q Consensus       120 V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~  196 (579)
                      |.+++|+|+++++++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+  ++|++||++++ .....+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999998  89999999987 5567789


Q ss_pred             cCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041          197 GHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       197 ~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  275 (579)
                      +|...|.+++|+| ++.+|++++ .|++|++||+......   .... .++...+..+.+.+   .+++.+|++++.||+
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~---~~~~~~l~s~s~D~~  209 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTLT-TGQERGVNYVDYYP---LPDKPYMITASDDLT  209 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEEE-CCCTTCEEEEEECC---STTCCEEEEEETTSE
T ss_pred             ccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---ceec-cCCcCcEEEEEEEE---cCCCCEEEEEcCCCe
Confidence            9999999999999 578899887 7999999999876543   1122 23333445555541   147889999999999


Q ss_pred             EEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008041          276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL  355 (579)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~  355 (579)
                      |++||+++++.+.                                                       .+.+|...|.++
T Consensus       210 i~iWd~~~~~~~~-------------------------------------------------------~~~~h~~~v~~~  234 (304)
T 2ynn_A          210 IKIWDYQTKSCVA-------------------------------------------------------TLEGHMSNVSFA  234 (304)
T ss_dssp             EEEEETTTTEEEE-------------------------------------------------------EEECCSSCEEEE
T ss_pred             EEEEeCCCCccce-------------------------------------------------------eeCCCCCCEEEE
Confidence            9999987654321                                                       344788899999


Q ss_pred             eecCCcceeeccccceecccceeee
Q 008041          356 NCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       356 ~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +|+|++.+| +||+.|+++++|++.
T Consensus       235 ~~~p~~~~l-~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          235 VFHPTLPII-ISGSEDGTLKIWNSS  258 (304)
T ss_dssp             EECSSSSEE-EEEETTSCEEEEETT
T ss_pred             EECCCCCEE-EEEcCCCeEEEEECC
Confidence            999999999 999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=286.36  Aligned_cols=239  Identities=9%  Similarity=0.050  Sum_probs=193.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCccccccccccccccccccccccceEEeeecccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++|  .+++|+||+ .|++|+.||+|+|||+.+++....+    .+|...+.++.|+++                     
T Consensus        83 ~~v--~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd---------------------  138 (344)
T 4gqb_B           83 AGV--ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS---------------------  138 (344)
T ss_dssp             SCE--EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---------------------
T ss_pred             CCE--EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---------------------
Confidence            467  455999986 7889999999999999988754333    355555555444444                     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~--  156 (579)
                            +.+|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++. .|++++.|++|++||+++++....+.  
T Consensus       139 ------g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          139 ------GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence                  788999999999999999999998666 68999999999999885 68999999999999999999888764  


Q ss_pred             cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCC
Q 008041          157 ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       157 ~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .+...+.+++|+|+ ++++++|+  |.|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~  290 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLS  290 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCC
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC
Confidence            34557999999995 56778776  8999999999999999999999999999999984 677777 7999999999887


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCce
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  285 (579)
                      +.      .....+...+..+.|+     |++. +|++++.||+|++|++++..
T Consensus       291 ~~------~~~~~H~~~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          291 EL------FRSQAHRDFVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EE------EEECCCSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC--
T ss_pred             cE------EEEcCCCCCEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCCC
Confidence            52      2344555667788887     8876 56789999999999987643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-34  Score=334.35  Aligned_cols=324  Identities=15%  Similarity=0.181  Sum_probs=262.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|||||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++                        
T Consensus       615 ~~~v--~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------  668 (1249)
T 3sfz_A          615 TDAV--YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------------------------  668 (1249)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             cccE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC------------------------
Confidence            4677  56699999999999999999999999999999999888777776666665                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         +.++++|+.||.|++||+.+++.+..+ .+|...|++++|+|  ++..+++|+.|+.|++||+.+++++..+.+|..
T Consensus       669 ---~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~  744 (1249)
T 3sfz_A          669 ---DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN  744 (1249)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence               788999999999999999999988766 67999999999999  556799999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-------------------------------------------
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-------------------------------------------  195 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-------------------------------------------  195 (579)
                      .|++++|+|+++++++++  |.|++||+.+++....+                                           
T Consensus       745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            999999999999999998  89999999876544332                                           


Q ss_pred             ------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC
Q 008041          196 ------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       196 ------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                                  .+|...|.+++|+|+++++++++ .|+.|++|++.++..     ...+..+...+..+.|+     |+
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----pd  893 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----PD  893 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----TT
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----CC
Confidence                        16788899999999999999987 799999999988753     34555666777888888     99


Q ss_pred             CcEEEEEEcCCeEEEEEcCCceeecccCCee-------------------------------------EEeeeccCCccc
Q 008041          264 GLYVLAISETGVCYIWYGQNIEELRNTKATK-------------------------------------ILSSSEDVNSKS  306 (579)
Q Consensus       264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~  306 (579)
                      |.+|++++.||.|++||..+...........                                     ..+.+ ..++++
T Consensus       894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~  972 (1249)
T 3sfz_A          894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPH  972 (1249)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECTT
T ss_pred             CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcCC
Confidence            9999999999999999976432111000000                                     00011 114555


Q ss_pred             ccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      ++    .+++|+.++.++.++        .........+.+|...|.+++|+|||+++ ++++.|+.+++|++.+
T Consensus       973 g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          973 LE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             SS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTT
T ss_pred             CC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCC
Confidence            55    677777665444322        23345566777899999999999999999 9999999999999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-33  Score=281.02  Aligned_cols=236  Identities=19%  Similarity=0.296  Sum_probs=202.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .++|  .+++|+|+|++|++|+.|+.|++||+.++    .....+.+|..                  .+.++.|.+   
T Consensus        97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~---  153 (340)
T 1got_B           97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG------------------YLSCCRFLD---  153 (340)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS------------------CEEEEEEEE---
T ss_pred             CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc------------------cEEEEEECC---
Confidence            4567  66699999999999999999999999875    34445554443                  344555544   


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                             ...+++++.||.|++||+.+++.+..+ .+|.+.|.+++|+|+++++++|+.|+.|++||+++++++..+.+|
T Consensus       154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence                   345899999999999999999988666 689999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ...|++++|+|++++|++|+  |.|++||+++++.+..+..  +...|.+++|+|+|+++++++ .|+.|++||+.+.+.
T Consensus       226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~  304 (340)
T 1got_B          226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR  304 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence            99999999999999999998  8999999999988877753  335799999999999999988 799999999988753


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                           ...+..+...+.++.|+     |+|.+|++|+.||+|++||
T Consensus       305 -----~~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          305 -----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----EEEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred             -----eeEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence                 34555666778888888     9999999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.7e-34  Score=318.49  Aligned_cols=250  Identities=13%  Similarity=0.218  Sum_probs=216.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +++|  .+++|||+|++||+|+.||.|+|||+.+++....+.+|...+.++.|+++                        
T Consensus        13 ~~~v--~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------------------------   66 (814)
T 3mkq_A           13 SDRV--KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR------------------------   66 (814)
T ss_dssp             CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred             CCce--EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCC------------------------
Confidence            5678  55599999999999999999999999999999988877665555544444                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         +.+|++|+.+|.|++||+.+++.+..+ .+|.+.|++++|+|+++++++++.||.|++||+.++ .....+.+|...
T Consensus        67 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  142 (814)
T 3mkq_A           67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (814)
T ss_dssp             ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence               778999999999999999999988666 679999999999999999999999999999999887 677788899999


Q ss_pred             eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |.+++|+| +++.+++++  |.|++||+.+++....+..+. ..+.+++|+|  +++++++++ .|+.|++||+.+++. 
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-  220 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC-  220 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE-
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE-
Confidence            99999999 888999887  899999999988877776655 8999999999  999999987 799999999988753 


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                          +..+..+...+.++.|+     |++.+|++++.||.|++||..+++.+......
T Consensus       221 ----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          221 ----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             ----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             ----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence                34555566667788887     99999999999999999999998776655433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-34  Score=288.72  Aligned_cols=283  Identities=10%  Similarity=0.041  Sum_probs=214.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCC-------cEEEEECCCCeE--------E--EEeccCcccccccccccccccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQV--------Q--TEFADIASTETTSLYGNRLEREHLSV   66 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg-------~i~vwd~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (579)
                      -||  .+++|+|||++|++|+.|.       .|++|++..+..        .  ..+.++...                 
T Consensus        15 ~PV--~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------   75 (365)
T 4h5i_A           15 YPA--YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDS-----------------   75 (365)
T ss_dssp             SCE--EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCC-----------------
T ss_pred             CCE--EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCc-----------------
Confidence            488  6669999999999998543       599999875531        1  112222222                 


Q ss_pred             ccceEEeeecccccccccCCcEEEE-----------EECCCeEEEEEccCCeEEEEe--------cCCCCCCEEEEEEcc
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVL-----------GTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFAT  127 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~-----------~~~~g~i~iwd~~~~~~~~~~--------~~~h~~~V~~l~~~~  127 (579)
                       +.++.+.           +..+++           ++.++.+++|++.+.......        ...+...+.+++|+|
T Consensus        76 -v~s~~~~-----------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp  143 (365)
T 4h5i_A           76 -PTAIDAS-----------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR  143 (365)
T ss_dssp             -CCEEEEE-----------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred             -eEEEEeC-----------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence             2333332           233443           445677999998765321111        123445689999999


Q ss_pred             CCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEE--eecCCCCE
Q 008041          128 HGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAV  202 (579)
Q Consensus       128 ~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~--~~~h~~~v  202 (579)
                      ||+++++++  .|++|++||+.+++++..+. |.+.|.+++|+|||+++++++ +.+.+|+..+++.+..  ..+|...|
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence            999976554  78999999999999998886 677899999999999999998 8888998888876543  35788899


Q ss_pred             EEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041          203 RFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       203 ~~l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  278 (579)
                      .+++|+|+++++++++ .|+    .++.|++...... ......+..+...+.++.|+     |+|++||+|+.||+|+|
T Consensus       223 ~~v~fspdg~~l~~~s-~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          223 SKINFIADDTVLIAAS-LKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIAL  295 (365)
T ss_dssp             EEEEEEETTEEEEEEE-ESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCEEEEEe-cCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEE
Confidence            9999999999999987 465    6888998776532 11233445566667888888     99999999999999999


Q ss_pred             EEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041          279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ||+++++.+...                                                      +.+|...|.+++||
T Consensus       296 wd~~~~~~~~~~------------------------------------------------------~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          296 VKLKDLSMSKIF------------------------------------------------------KQAHSFAITEVTIS  321 (365)
T ss_dssp             EETTTTEEEEEE------------------------------------------------------TTSSSSCEEEEEEC
T ss_pred             EECCCCcEEEEe------------------------------------------------------cCcccCCEEEEEEC
Confidence            999877654211                                                      12688899999999


Q ss_pred             CCcceeeccccceecccceeee
Q 008041          359 QDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      |||++| +|||.|+++|+|++.
T Consensus       322 pdg~~l-aS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          322 PDSTYV-ASVSAANTIHIIKLP  342 (365)
T ss_dssp             TTSCEE-EEEETTSEEEEEECC
T ss_pred             CCCCEE-EEEeCCCeEEEEEcC
Confidence            999999 999999999999983

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.2e-34  Score=288.31  Aligned_cols=282  Identities=12%  Similarity=0.105  Sum_probs=219.6

Q ss_pred             CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEec--cCccccccccccccccccccccccceEEeeecccc
Q 008041            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .+++|+|+| ++||+|+.||.|+|||+.+++....+.  +|..                  .+.++.|.+.+  
T Consensus        73 ~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~--  130 (383)
T 3ei3_B           73 DRRV--TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD------------------AITGMKFNQFN--  130 (383)
T ss_dssp             SSCE--EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC------------------BEEEEEEETTE--
T ss_pred             CCCE--EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC------------------ceeEEEeCCCC--
Confidence            4678  556999999 999999999999999999888776654  2433                  44566665532  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                            +.++++++.||.|++||+.+.... .+.  .+|...|.+++|+|+++++++++.|+.|++||+ +++.+..+.+
T Consensus       131 ------~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  202 (383)
T 3ei3_B          131 ------TNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL  202 (383)
T ss_dssp             ------EEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             ------CCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence                  678999999999999999975432 332  345588999999999999999999999999998 6888899999


Q ss_pred             CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC----CeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEc
Q 008041          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~  229 (579)
                      |...|.+++|+|+++ ++++++  +.|++||+++    +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||+
T Consensus       203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~  280 (383)
T 3ei3_B          203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSS  280 (383)
T ss_dssp             SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEET
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEEC
Confidence            999999999999999 888887  8999999998    5666666 6999999999999 999999988 7999999999


Q ss_pred             CCCccccceeeeee-----e---------cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041          230 DGVKKQSASCVLAM-----E---------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       230 ~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      ++.+...  .....     .         ++......+.++     |++++  +++.||.|++||+.+++.+..+..   
T Consensus       281 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~---  348 (383)
T 3ei3_B          281 YDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQLRD---  348 (383)
T ss_dssp             TBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEEECB---
T ss_pred             CCCcccc--ccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeeeecC---
Confidence            8876431  11000     0         111122224444     66666  677899999999887765332210   


Q ss_pred             EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                                                                        ..|...+..++|+|||.+| ++++ |+.++
T Consensus       349 --------------------------------------------------~~~~~~~~~~~~s~~g~~l-~s~s-d~~i~  376 (383)
T 3ei3_B          349 --------------------------------------------------PNAAGIISLNKFSPTGDVL-ASGM-GFNIL  376 (383)
T ss_dssp             --------------------------------------------------TTBCSCCCEEEECTTSSEE-EEEE-TTEEE
T ss_pred             --------------------------------------------------CCCCceEEEEEEecCccEE-EEec-CCcEE
Confidence                                                              0134456677999999999 8887 99999


Q ss_pred             ceeee
Q 008041          376 GRYVQ  380 (579)
Q Consensus       376 ~w~~~  380 (579)
                      +|++.
T Consensus       377 iw~~~  381 (383)
T 3ei3_B          377 IWNRE  381 (383)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-35  Score=296.99  Aligned_cols=241  Identities=8%  Similarity=0.078  Sum_probs=190.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|+++  +|+|+|++||+|+.||.|+|||+.++  +....+.+|...+.++.|+++                      
T Consensus        11 ~~~v~~~--~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------------------   66 (377)
T 3dwl_C           11 PKPSYEH--AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----------------------   66 (377)
T ss_dssp             SSCCSCC--EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----------------------
T ss_pred             CCcEEEE--EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----------------------
Confidence            4688555  99999999999999999999999988  666677666655555555444                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeE
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~  154 (579)
                           +.+|++++.||.|++||+.+++   ....+ .+|...|++++|+|++++|++++.|+.|++||+.+++   ....
T Consensus        67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence                 6789999999999999999887   33333 6799999999999999999999999999999999887   4677


Q ss_pred             eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECC------------------CCeeeEEeecCCCCEEEEEEecCCCE
Q 008041          155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       155 ~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~------------------~~~~~~~~~~h~~~v~~l~~s~~~~~  213 (579)
                      +.. |...|.+++|+|+++++++++  +.|++||++                  .++++..+ +|...|.+++|+|++++
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            777 899999999999999999988  899999985                  35566677 89999999999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       214 l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      |++++ .|+.|++||+.+++.. ...+..+..+...+..+.|+     |++++|++++.++.+ +|+..
T Consensus       220 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          220 LAYAG-HDSSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEEE-TTTEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred             EEEEe-CCCcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence            99988 7999999999988752 11234555666667788887     999999988776666 66554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.6e-33  Score=289.15  Aligned_cols=304  Identities=13%  Similarity=0.158  Sum_probs=245.9

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++++|++|++|+.||+|++||+.+++....+.+|...+.+                  +.|.           +.++++
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~------------------~~~~-----------~~~l~s  174 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS------------------SQMR-----------DNIIIS  174 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEE------------------EEEE-----------TTEEEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEE------------------EEec-----------CCEEEE
Confidence            57778999999999999999999999999988877655543                  3332           457999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g  171 (579)
                      |+.||.|++||+.+++.+..+ .+|...|.++.|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.++++  ++
T Consensus       175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence            999999999999999988666 6899999999995  568999999999999999999999999999999999999  67


Q ss_pred             CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCcee
Q 008041          172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       172 ~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      +++++++  |.|++||+++++.+.++.+|...|.++.|  ++.++++++ .|+.|++||+++++.     +..+..+...
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~-----~~~~~~~~~~  321 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNC-----IHTLTGHQSL  321 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCE-----EEEECCCCSC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCE-----EEEEcCCccc
Confidence            8888887  89999999999999999999999999999  788999987 799999999998763     3444444444


Q ss_pred             EEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC---eeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      +..+.+       ++.++++++.||.|++||+.+++.+.....   ....+.+.. +  +++    .+++++.|+.++.+
T Consensus       322 v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          322 TSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW  387 (445)
T ss_dssp             EEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred             EEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence            444443       567999999999999999999887765543   222222222 1  223    78888887765553


Q ss_pred             ceEEEEEeCCCCCceeEEE-----ecCCCCcEEEeecCCcceeeccccceec----ccceeee
Q 008041          327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ  380 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~  380 (579)
                      +        .........+     ..|...|.+++|+|+|.++ ++|+.|++    +.+|++.
T Consensus       388 d--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          388 D--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             E--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             E--------CCCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence            3        2233344444     3678889999999999999 99999998    8899874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.3e-34  Score=331.60  Aligned_cols=338  Identities=18%  Similarity=0.222  Sum_probs=265.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++                  .    
T Consensus       656 h~~~v--~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------~----  711 (1249)
T 3sfz_A          656 HEDEV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK------------------S----  711 (1249)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------S----
T ss_pred             CCCCE--EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC------------------C----
Confidence            35678  56699999999999999999999999999999999877766655555442                  1    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----  156 (579)
                         +..++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+++++++++.||.|++||+.+++....+.     
T Consensus       712 ---~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          712 ---NHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             ---SCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ---CceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence               1568999999999999999999988666 6899999999999999999999999999999987765443321     


Q ss_pred             --------------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008041          157 --------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTF  184 (579)
Q Consensus       157 --------------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--~~i~vw  184 (579)
                                                                        +|...|.+++|+|+++++++++  |.|++|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw  867 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW  867 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                                                              5677899999999999999998  899999


Q ss_pred             ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---------------ee---------
Q 008041          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---------------CV---------  240 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~---------------~~---------  240 (579)
                      |+.+++.+..+.+|...|.+++|+|+++++++++ .|+.|++|++.........               ..         
T Consensus       868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            9999999999999999999999999999999988 7999999997642110000               00         


Q ss_pred             --e------eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041          241 --L------AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       241 --~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                        .      ........+.+++++     |++.++++|+.||.|++||+.+++.+.....+...+.+.. ++++++    
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~---- 1016 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGK---- 1016 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSS----
T ss_pred             EEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCC----
Confidence              0      000122345667777     9999999999999999999999887766554443333333 566666    


Q ss_pred             hhhhccccceecCCc---------------------------------eEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008041          313 AIFAAKLQDIVKPAS---------------------------------VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~---------------------------------~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                      .+++++.|+.++.++                                 +.+.+. ..........+.+|...+.+++|+|
T Consensus      1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vw-d~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW-NVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp             CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEE-ETTTTCCCEEEECCSSCCCCEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEE-ECCCCceeEEEcccCCcEEEEEECC
Confidence            777777776554432                                 111111 1223345567788999999999999


Q ss_pred             Ccceeeccccceecccceeee
Q 008041          360 DGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       360 dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      ||.++ ++++.|+++++|++.
T Consensus      1096 d~~~l-~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A         1096 DATKF-SSTSADKTAKIWSFD 1115 (1249)
T ss_dssp             SSSSC-EEECCSSCCCEECSS
T ss_pred             CCCEE-EEEcCCCcEEEEECC
Confidence            99999 999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.4e-34  Score=287.16  Aligned_cols=298  Identities=11%  Similarity=0.124  Sum_probs=234.7

Q ss_pred             CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041            2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      +.++|  .+++|+|+    ...+++++.++.|+|||+.+++.+..+..+..             ......+.++.|.+..
T Consensus        17 h~~~v--~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           17 HNQPL--FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------------ADADENFYTCAWTYDS   81 (366)
T ss_dssp             TCSCE--EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------------SCTTCCEEEEEEEECT
T ss_pred             CCCce--EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------------cCCCCcEEEEEeccCC
Confidence            45788  56699984    44566666677999999998887766653321             1123457788888764


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-
Q 008041           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-  155 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-  155 (579)
                      ..     ++.++++|+.+|.|++||+.+++.+..+ .+|..+|++++|+| ++++|++++.||.|++||+.+++.+..+ 
T Consensus        82 ~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           82 NT-----SHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             TT-----CCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CC-----CCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence            21     1568999999999999999999988666 57999999999999 9999999999999999999999998888 


Q ss_pred             --ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee----------------------------cCCCCEE
Q 008041          156 --RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVR  203 (579)
Q Consensus       156 --~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~----------------------------~h~~~v~  203 (579)
                        ..|...|.+++|+|+++++++++  |.|++||+++++.+..+.                            +|...|.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence              67999999999999999999998  899999999876554333                            3999999


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccc---------cceeeeeeecCceeEEeEEecCCcccCC--CcEEEEEEc
Q 008041          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISE  272 (579)
Q Consensus       204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~  272 (579)
                      +++|+  ++++++++ .|+.|++||+.+....         ....+..+..+...+..+.|+     |+  +++|++++.
T Consensus       236 ~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~  307 (366)
T 3k26_A          236 CVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQ  307 (366)
T ss_dssp             EEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECT
T ss_pred             EEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEec
Confidence            99999  67888887 7999999999876531         011234444455556666666     78  999999999


Q ss_pred             CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC--CC
Q 008041          273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SG  350 (579)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~  350 (579)
                      ||.|++||+.+++.....                                                   ...+.+|  ..
T Consensus       308 dg~i~vwd~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~  336 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAK---------------------------------------------------CTTLTHHKCGA  336 (366)
T ss_dssp             TSCEEEEECCSSSGGGCE---------------------------------------------------EEEECCTTCCS
T ss_pred             CCcEEEEECCCCCCcccc---------------------------------------------------ceEEcccccCC
Confidence            999999998776432100                                                   0122344  67


Q ss_pred             CcEEEeecCCcceeeccccceecccceeee
Q 008041          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .|.+++|+|||++| ++++.|+.+++|++.
T Consensus       337 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          337 AIRQTSFSRDSSIL-IAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred             ceEEEEeCCCCCeE-EEEeCCCEEEEEEec
Confidence            89999999999999 999999999999873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.5e-34  Score=285.32  Aligned_cols=309  Identities=12%  Similarity=0.110  Sum_probs=232.6

Q ss_pred             CCCcccceEEEEccCCCEE-EEEeC---CCcEEEEECCCCeEEEEec-cCccccccccccccccccccccccceEEeeec
Q 008041            2 GSSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~l-asg~~---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +..+|  .+++|+|++..+ ++|+.   ||.|+|||+.+++...... +|..                  .+.++.|.+.
T Consensus        17 h~~~v--~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~   76 (357)
T 3i2n_A           17 FNYTV--FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK------------------PIKCGTFGAT   76 (357)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS------------------CEEEEECTTC
T ss_pred             CCCce--EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC------------------cEEEEEEcCC
Confidence            34678  566999999655 56665   9999999999988754432 3333                  4455666554


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCCCCEEEEEE------ccCCCEEEEEeCCCcEEEEeCCCC
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~------~~~~~~l~s~~~d~~v~iwd~~~~  149 (579)
                      .++      +.++++|+.+|.|++||+.+++ .+..+ .+|...|.++.|      +|++++|++++.|+.|++||+.++
T Consensus        77 ~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           77 SLQ------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             CTT------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred             CCC------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence            322      5789999999999999999987 55444 689999999954      689999999999999999999988


Q ss_pred             c-eeeEeecCCC----CeeEEE----EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec---CCCEEE
Q 008041          150 S-LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVL  215 (579)
Q Consensus       150 ~-~~~~~~~~~~----~v~~l~----~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~  215 (579)
                      + .+..+..+.+    .+.+++    |+|+++++++++  |.|++||+++++.... ..|...|.+++|+|   ++.+++
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEE
T ss_pred             CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEE
Confidence            7 6777766554    889998    788999999998  8999999999987544 66899999999999   899999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCceeecccCCee
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATK  294 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  294 (579)
                      +++ .|+.|++||+++.+............+...+..+.|+     |++. +|++++.||.|++||+.++.......   
T Consensus       229 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  299 (357)
T 3i2n_A          229 ATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD---  299 (357)
T ss_dssp             EEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC---
T ss_pred             EEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc---
Confidence            987 7999999999887644211112233556667778887     8888 89999999999999987665432111   


Q ss_pred             EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008041          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~  374 (579)
                                ..+..    .          ...+         .......+.+|...|.+++|+|+|.+++++++.|+.+
T Consensus       300 ----------~~g~~----~----------~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          300 ----------SEGIE----M----------GVAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             ----------TTSCC----C----------CCCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             ----------CCCCc----c----------cccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence                      11110    0          0000         1123446778999999999999999993389999999


Q ss_pred             cceeee
Q 008041          375 RGRYVQ  380 (579)
Q Consensus       375 ~~w~~~  380 (579)
                      ++|++.
T Consensus       347 ~iw~~~  352 (357)
T 3i2n_A          347 RVLIVT  352 (357)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-35  Score=304.33  Aligned_cols=310  Identities=12%  Similarity=-0.001  Sum_probs=213.1

Q ss_pred             EEEeCCCcEEEEECCCCeEE----EEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           21 AICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        21 asg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      |+++.|++|+|||+.++++.    ..+.++..                  .+..+.|.|....   ..++.+|++++.||
T Consensus       177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~------------------~V~~v~wsp~~~~---~~~~~~LAs~s~Dg  235 (524)
T 2j04_B          177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG------------------EVWDLKWHEGCHA---PHLVGCLSFVSQEG  235 (524)
T ss_dssp             -----CEEEEEEEEETTTCCEEEEEEEEECCC------------------SEEEEEECSSCCC---SSSSCEEEEEETTS
T ss_pred             ccCCCCceEEEEEccCCCCCceEEEEEEecCC------------------cEEEEEECCCCCC---CCCCceEEEEecCC
Confidence            33557889999999877642    22322222                  3456666664100   00157899999999


Q ss_pred             eEEEEEccCCeEE----------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEE
Q 008041           97 DVLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCM  165 (579)
Q Consensus        97 ~i~iwd~~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~l  165 (579)
                      .|++||+.++...          ...+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|+++
T Consensus       236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv  314 (524)
T 2j04_B          236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV  314 (524)
T ss_dssp             CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred             eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence            9999999876421          11336799999999999864 89999999999999998774 455688999999999


Q ss_pred             --EEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          166 --AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       166 --~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                        +|+|+| .+|++++  ++|++||+++++++.++.+|..  .|.+++|+|+++.+++++ .|++|++||++.+...   
T Consensus       315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~---  390 (524)
T 2j04_B          315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV---  390 (524)
T ss_dssp             EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC---
T ss_pred             EEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc---
Confidence              578888 8899988  9999999999888878877764  588999999999988887 7999999999987643   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCee-----EEeeeccCCcccccccchh
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  313 (579)
                        ..+..+...+..+.|+     |+|.+|++|+.||+|++||.... .+..++...     ..+.... ++++++    .
T Consensus       391 --~~l~gH~~~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~-~sp~g~----~  457 (524)
T 2j04_B          391 --HPLVSRETTITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWD-YSIKDD----K  457 (524)
T ss_dssp             --EEEEECSSCEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECB-CCSSSC----E
T ss_pred             --eeeecCCCceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEec-cCCCCC----e
Confidence              3344455567778887     99999999999999999997653 333222111     0111111 455544    1


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc---eeeccccceecccceeee
Q 008041          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~~~~w~~~  380 (579)
                      +. .  .+..+...     .  .........+.+|...|.+++|+|++.   ++ ++|+.|+++|+|++.
T Consensus       458 ~~-~--~~~~~~~~-----~--~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l~  516 (524)
T 2j04_B          458 YR-I--DSSYEVYP-----L--TVNDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYLS  516 (524)
T ss_dssp             EE-E--CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEECS
T ss_pred             EE-c--cCCceecc-----c--ccCCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEcc
Confidence            11 1  11001100     0  001234456778999999999999964   88 999999999999984

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-33  Score=286.56  Aligned_cols=304  Identities=15%  Similarity=0.156  Sum_probs=234.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCccccccccccccccccccccccceEEeee
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      +.++|  .+++|+|  ++|++|+.||.|+|||+.+++      ....+.+|..                  .+.++.|.+
T Consensus        15 h~~~i--~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~   72 (397)
T 1sq9_A           15 HDADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------------------GLHHVDVLQ   72 (397)
T ss_dssp             SSSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT------------------CEEEEEEEE
T ss_pred             hhcCe--EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC------------------cEEEEEEec
Confidence            45788  5559999  799999999999999999887      5555554443                  455666766


Q ss_pred             cccccccccCC---cEEEEEECCCeEEEEEccCCeE-----EEEecCCC-----CCCEEEEEEc----cCCCE-EEEEeC
Q 008041           76 VDRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGA  137 (579)
Q Consensus        76 ~~~~~~~~~~~---~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~~~  137 (579)
                      ....     ++   .++++++.+|.|++||+.+++.     ...+ ..|     ...|.+++|+    |++++ |++++.
T Consensus        73 ~~~~-----~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  146 (397)
T 1sq9_A           73 AIER-----DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV  146 (397)
T ss_dssp             EEET-----TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred             cccc-----CCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence            4100     14   6899999999999999998875     5444 567     5899999999    99999 999999


Q ss_pred             CCcEEEEeCCC------Cceee-----Eee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041          138 DGMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       138 d~~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~  197 (579)
                      ||.|++||+.+      ++.+.     .+.       .|...|.+++|+|++ ++++++  +.|++||+++++.+..+..
T Consensus       147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  225 (397)
T 1sq9_A          147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES  225 (397)
T ss_dssp             TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence            99999999988      66666     774       478899999999999 999988  8999999999999999998


Q ss_pred             ---C---CCCEEEEEEecCCCEEEEEecCC---CeEEEEEcCCCccccceeeeeeec-------------CceeEEeEEe
Q 008041          198 ---H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCI  255 (579)
Q Consensus       198 ---h---~~~v~~l~~s~~~~~l~s~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  255 (579)
                         |   ...|.+++|+|++++|++++ .|   +.|++||+.+++..     ..+..             +...+..+.|
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEE
T ss_pred             cccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEE
Confidence               9   99999999999999999987 68   99999999987633     34443             5566777888


Q ss_pred             cCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeC
Q 008041          256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG  335 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g  335 (579)
                      +     |++.+|++++.||.|++||+.+++.+.......         ...+..  ..    ..              .|
T Consensus       300 ~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~----~~--------------~g  345 (397)
T 1sq9_A          300 N-----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHC---------DDIEIE--ED----IL--------------AV  345 (397)
T ss_dssp             C-----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCG---------GGCSSG--GG----CC--------------CB
T ss_pred             C-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc---------Ccccch--hh----hh--------------cc
Confidence            7     999999999999999999999887654432100         000000  00    00              00


Q ss_pred             CCCCceeEEEecCCCCcEEEeecCCc----------ceeeccccceecccceeee
Q 008041          336 LLLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       336 ~~~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~~s~s~d~~~~~w~~~  380 (579)
                      ..     ....+|...|.+++|+|||          .+| ++++.|+.+++|++.
T Consensus       346 ~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          346 DE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREA  394 (397)
T ss_dssp             CT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEE
T ss_pred             cc-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcC
Confidence            00     0123578899999999999          688 999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-33  Score=273.27  Aligned_cols=247  Identities=16%  Similarity=0.190  Sum_probs=196.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++++|  .+++|+|+|++||+|+.|++|+|||+.+  +++...+.+|...+.++.|+++                  .  
T Consensus         8 h~~~V--~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~------------------~--   65 (297)
T 2pm7_B            8 HNEMI--HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------K--   65 (297)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG------------------G--
T ss_pred             CcCce--EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC------------------C--
Confidence            45778  4559999999999999999999999974  3566777777665555444432                  1  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce--ee
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL--LG  153 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~~--~~  153 (579)
                           .+.+|++|+.||.|++||+.+++  .+.. ..+|...|.+++|+|+  |.+|++++.|+.|++||++++..  ..
T Consensus        66 -----~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           66 -----FGTILASCSYDGKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             -----GCSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             -----cCCEEEEEcCCCEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence                 16789999999999999999875  2323 3679999999999997  88999999999999999987632  45


Q ss_pred             EeecCCCCeeEEEEccC-------------CCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCC---
Q 008041          154 KFRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG---  211 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~-------------g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~---  211 (579)
                      .+.+|...|.+++|+|+             +++|++|+  +.|++||+++++    ...++.+|...|.+++|+|++   
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence            67889999999999997             56899887  899999998765    567889999999999999985   


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ++|++++ .|++|++||++...............+...+..+.|+     |+|++|++++.||.|++|+..
T Consensus       220 ~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred             eEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence            7888887 7999999999875321100111112234456677787     999999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=291.59  Aligned_cols=257  Identities=12%  Similarity=0.170  Sum_probs=196.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccCccccccccccccccccccccccceE
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++|  .+++|+|+|++||+|+.||.|+|||+.++.           ....+.+|.......      ..-.....+.++
T Consensus        28 ~~~V--~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~V~~l   99 (447)
T 3dw8_B           28 ADII--STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYL------KSLEIEEKINKI   99 (447)
T ss_dssp             GGSE--EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGG------GTEEECCCCCEE
T ss_pred             cCcE--EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccc------ccccccCceEEE
Confidence            3678  566999999999999999999999999877           466666654211000      000012356677


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE---------------------------------------EEe
Q 008041           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL  112 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~---------------------------------------~~~  112 (579)
                      .|.+...       ...+++++.||.|++||+.++...                                       ..+
T Consensus       100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B          100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence            7776521       268999999999999999875542                                       133


Q ss_pred             cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cceee-------EeecCCCCeeEEEEccCC-CEEEEEC--CeE
Q 008041          113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLG-------KFRASTKGISCMAVSSDG-KMLATAA--GQL  181 (579)
Q Consensus       113 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i  181 (579)
                      ..+|...|++++|+|++++|++| .|+.|++||+.+ ++.+.       .+.+|...|++++|+|++ +++++++  |.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            46899999999999999999998 899999999984 44444       356788999999999998 8999988  899


Q ss_pred             EEEECCCCee----eEEeecCCC------------CEEEEEEecCCCEEEEEecCCCeEEEEEcCC-Cccccceeeeeee
Q 008041          182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME  244 (579)
Q Consensus       182 ~vwd~~~~~~----~~~~~~h~~------------~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~-~~~~~~~~~~~~~  244 (579)
                      ++||+++++.    +..+.+|..            .|.+++|+|++++|++++ . +.|++||++. ++..     ..+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~  324 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ  324 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence            9999999887    788888876            899999999999999887 5 9999999987 4432     2222


Q ss_pred             cCceeE---------------EeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      .+....               ..+.|+     |++.+|++++.||.|++||+.+++.+
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence            222211               126676     99999999999999999999988765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-32  Score=279.27  Aligned_cols=240  Identities=19%  Similarity=0.272  Sum_probs=203.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|+|||++||+|+.||.|+|||+.+++....+.+|...+.++.|+++                           +..
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~---------------------------~~~  179 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---------------------------GDK  179 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC---------------------------CCE
Confidence            45699999999999999999999999999999998887776666656554                           778


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-------ecCCC
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTK  160 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~  160 (579)
                      +++|+.||.|++||+.+++....+  .+...+.+++|+| +++++++|+.|+.|++||+.+++.+..+       .+|..
T Consensus       180 l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~  257 (393)
T 1erj_A          180 LVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD  257 (393)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             EEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence            999999999999999999887655  3667899999999 8999999999999999999999887776       57888


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCC------------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      .|.+++|+|+|+++++++  +.|++||+++.            .+...+.+|...|.+++|+|++++|++++ .|+.|++
T Consensus       258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~i  336 (393)
T 1erj_A          258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLF  336 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEE
Confidence            999999999999999998  89999999763            34567889999999999999999999988 7999999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecC-CcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDN-GGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      ||+.+++.     +..+..+...+..+.+++ ..+.|++.+|++|+.||+|++|++..
T Consensus       337 wd~~~~~~-----~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          337 WDKKSGNP-----LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EETTTCCE-----EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EECCCCeE-----EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99998763     344554555555566552 34557899999999999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=311.71  Aligned_cols=196  Identities=14%  Similarity=0.140  Sum_probs=166.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++||+|+.||+|+||+..+++....+. |                  ...+.++.|.+       
T Consensus        17 ~~~V--~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~------------------~~~V~~l~fsp-------   68 (902)
T 2oaj_A           17 SSKP--IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-D------------------RSAIKEMRFVK-------   68 (902)
T ss_dssp             SSCE--EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-S------------------CCCEEEEEEET-------
T ss_pred             CCCc--EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-C------------------CCCEEEEEEcC-------
Confidence            4678  566999999999999999999999998877665432 2                  22456666765       


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----------
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----------  152 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----------  152 (579)
                         +.+|++++.|+.|++||+.+++.+..+.  |...|++++|+|+++++++|+.||.|++||+.+++..          
T Consensus        69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence               3479999999999999999998887663  7789999999999999999999999999999988753          


Q ss_pred             -eEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------------------CCCEEEEEEecC
Q 008041          153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN  210 (579)
Q Consensus       153 -~~~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h------------------~~~v~~l~~s~~  210 (579)
                       ..+.+|.++|.+++|+|+ +..+++|+  |.| +||+++++.+..+..|                  ...|.+++|+|+
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence             234668889999999996 46788877  899 9999999998888766                  577999999999


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCc
Q 008041          211 GKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      |++|++++ .|+.|++||+++++
T Consensus       223 g~~lasgs-~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          223 SLHIITIH-EDNSLVFWDANSGH  244 (902)
T ss_dssp             SSEEEEEE-TTCCEEEEETTTCC
T ss_pred             CCEEEEEE-CCCeEEEEECCCCc
Confidence            99999998 79999999998765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-32  Score=269.44  Aligned_cols=244  Identities=18%  Similarity=0.210  Sum_probs=202.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.+|  .+++|+|+|++|++|+.|++|+|||+.+++....+.+|...+.++.|+++                       
T Consensus        64 h~~~v--~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------  118 (319)
T 3frx_A           64 HSHIV--QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-----------------------  118 (319)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred             CcccE--EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC-----------------------
Confidence            34677  55599999999999999999999999999999999888777766666655                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC------CCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                          +.++++|+.||.|++||+... .+..+ .+|...|.++.|+|.      +..+++++.|+.|++||+.+++....+
T Consensus       119 ----~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  192 (319)
T 3frx_A          119 ----ASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF  192 (319)
T ss_dssp             ----SCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ----CCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence                788999999999999999754 44344 679999999999985      448999999999999999999999999


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .+|...|.+++|+|+|++|++++  |.|++||+.+++.+.++.. ...|.+++|+|++.++++++  ++.+++|++....
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~  269 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQY  269 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCe
Confidence            99999999999999999999998  8999999999999988875 46899999999999988875  5669999998754


Q ss_pred             ccccee-ee--eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          234 KQSASC-VL--AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       234 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      ...... .+  ....+...+..++|+     |+|++|++|+.||.|++||+.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          270 LVDDLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred             eeeccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence            220000 00  001123345567787     99999999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-32  Score=279.00  Aligned_cols=275  Identities=15%  Similarity=0.187  Sum_probs=226.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+++|++  ..+++++.||.|++||+.+++....+.. |.                  ..++++.|.+.         +.
T Consensus        97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~------------------~~v~~v~~s~~---------~~  147 (401)
T 4aez_A           97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES------------------TYVASVKWSHD---------GS  147 (401)
T ss_dssp             BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT------------------CCEEEEEECTT---------SS
T ss_pred             EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC------------------CCEEEEEECCC---------CC
Confidence            4345654  5688888999999999999998776653 22                  34556666653         78


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeecCCCCeeEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~l~  166 (579)
                      ++++|+.+|.|++||+.+++.+..+ .+|...|.+++|  +++++++++.||.|++||++ .+..+..+.+|...|.+++
T Consensus       148 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          148 FLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             EEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence            8999999999999999999988666 589999999999  56799999999999999998 5677888999999999999


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeeee
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      |+|+++++++++  +.|++||+++++.+..+.+|...|.+++|+|++..++++++  .|+.|++||+.+++..     ..
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~  299 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NT  299 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EE
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EE
Confidence            999999999998  89999999999999999999999999999998765555542  5999999999987633     34


Q ss_pred             eecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      +.+. ..+..+.|+     |++.++++++  .||.|++||+.+++....                               
T Consensus       300 ~~~~-~~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~-------------------------------  342 (401)
T 4aez_A          300 VDAG-SQVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ-------------------------------  342 (401)
T ss_dssp             EECS-SCEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEEE-------------------------------
T ss_pred             EeCC-CcEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCccceeE-------------------------------
Confidence            4444 346677787     9999999954  799999999765432110                               


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                            ..+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus       343 ----------------------~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          343 ----------------------VDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVY  379 (401)
T ss_dssp             ----------------------EEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECC
T ss_pred             ----------------------EEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECC
Confidence                                  0234688899999999999999 999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-32  Score=296.41  Aligned_cols=330  Identities=11%  Similarity=0.037  Sum_probs=251.7

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .++|  .+++|+|+++ ++++++.||.|++||..+++....+.+|..               ....+.++.|.+.+    
T Consensus       160 ~~~v--~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~----  218 (615)
T 1pgu_A          160 SQRI--NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK---------------QGSFVRDVEFSPDS----  218 (615)
T ss_dssp             SSCE--EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC---------------TTCCEEEEEECSTT----
T ss_pred             CccE--EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC---------------CCceEEEEEECCCC----
Confidence            4567  5569999998 899999999999999999999988876554               00134556665532    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++++.+|.|++||+.+++.+..+..   +|..+|.+++|+ +++++++++.|+.|++||+.+++.+..+..+
T Consensus       219 ----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          219 ----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             ----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence                56799999999999999999998877745   899999999999 9999999999999999999999999988876


Q ss_pred             ----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC----------------------
Q 008041          159 ----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN----------------------  210 (579)
Q Consensus       159 ----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~----------------------  210 (579)
                          ...+.++.|+ +++++++++  |.|++||+.+++.+..+.+|...|.+++| |+                      
T Consensus       294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~  371 (615)
T 1pgu_A          294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH  371 (615)
T ss_dssp             TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred             CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence                3578888886 788888887  89999999998888888777777666666 44                      


Q ss_pred             -----------CCEEEEEecCCCeEEEEEcCCCcc---------------------------------------------
Q 008041          211 -----------GKYVLSSAVGERYIALWRTDGVKK---------------------------------------------  234 (579)
Q Consensus       211 -----------~~~l~s~~~~d~~i~vwd~~~~~~---------------------------------------------  234 (579)
                                 +..+++++ .|+.|++|++...+.                                             
T Consensus       372 ~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          372 SNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             cCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence                       45555555 466666665542110                                             


Q ss_pred             ---------------ccce---------ee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          235 ---------------QSAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       235 ---------------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                                     ....         .. ..+..+...+.++.|+     |++++|++++.||.|++||+.+++.+..
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~~~~~  525 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSREVKTS  525 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence                           0000         00 2223344556677777     9999999999999999999999998877


Q ss_pred             cCC-eeEEeeeccCCcc----------cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041          290 TKA-TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       290 ~~~-~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ... +...+.+.. +++          +++    .+++++.|+.++.++       -.........+.+|...|.+++|+
T Consensus       526 ~~~~h~~~v~~~~-~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~-------~~~~~~~~~~~~~h~~~v~~l~~s  593 (615)
T 1pgu_A          526 RWAFRTSKINAIS-WKPAEKGANEEEIEED----LVATGSLDTNIFIYS-------VKRPMKIIKALNAHKDGVNNLLWE  593 (615)
T ss_dssp             CSCCCSSCEEEEE-ECCCC------CCSCC----EEEEEETTSCEEEEE-------SSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             eecCCCCceeEEE-EcCccccccccccCCC----EEEEEcCCCcEEEEE-------CCCCceechhhhcCccceEEEEEc
Confidence            654 333333333 566          666    888998877655533       112225566778899999999999


Q ss_pred             CCcceeeccccceecccceeee
Q 008041          359 QDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      |||. | ++++.|+++++|++.
T Consensus       594 ~~~~-l-~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          594 TPST-L-VSSGADACIKRWNVV  613 (615)
T ss_dssp             ETTE-E-EEEETTSCEEEEEEC
T ss_pred             CCCC-e-EEecCCceEEEEeee
Confidence            9999 8 999999999999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-32  Score=272.63  Aligned_cols=236  Identities=14%  Similarity=0.194  Sum_probs=199.0

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      ..|  .+++|+|+|.+||+|+.|+.+++|++....      ....+.+|..                  .+.++.|.+. 
T Consensus       107 ~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~-  165 (354)
T 2pbi_B          107 TWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN------------------YLSACSFTNS-  165 (354)
T ss_dssp             SCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS------------------CEEEEEECSS-
T ss_pred             CCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC------------------cEEEEEEeCC-
Confidence            456  566999999999999999999999986431      1222333333                  3445555543 


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                              +..+++++.||.|++||+.+++.+..+ .+|...|.+++|+|  +|++|++|+.||+|++||+++++++..+
T Consensus       166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence                    667999999999999999999988666 68999999999988  5689999999999999999999999999


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .+|...|++++|+|++++|++++  ++|++||+++++.+..+..+  ...+.+++|+|+++++++++ .|+.|++||+.+
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~  315 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK  315 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence            99999999999999999999998  89999999999887777543  35789999999999999987 799999999988


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      ++.     +..+..+...+.++.|+     |+|++|++++.||+|++|+
T Consensus       316 ~~~-----~~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          316 GSR-----VSILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred             Cce-----EEEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence            763     34455666677888888     9999999999999999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.8e-32  Score=277.44  Aligned_cols=273  Identities=14%  Similarity=0.239  Sum_probs=221.1

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++||++ ++||+|. |++|+|||..+|++...+..+.               | ...++++.|.+.         +.+|+
T Consensus       111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~---------------~-~~~V~sv~fspd---------g~~la  163 (420)
T 4gga_A          111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQ---------------P-GEYISSVAWIKE---------GNYLA  163 (420)
T ss_dssp             EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCS---------------T-TCCEEEEEECTT---------SSEEE
T ss_pred             EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecC---------------C-CCcEEEEEECCC---------CCEEE
Confidence            489975 5888776 9999999999999887765321               1 223556666543         78899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p  169 (579)
                      +|+.||.|++||+.+++.+..+ .+|...+.++.+  ++..+++|+.|+.+++||.... ..+..+.+|...+..+.++|
T Consensus       164 sgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            9999999999999999988666 689999999887  5679999999999999998764 55677899999999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCCCE-EEEE-ecCCCeEEEEEcCCCccccceeee
Q 008041          170 DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKY-VLSS-AVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       170 ~g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~-l~s~-~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +|+++++++  +.+++|+..+++    .+.....|...|.+++|+|++.. ++++ ++.|++|++||+.+++..     .
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-----~  315 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S  315 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----E
T ss_pred             CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----e
Confidence            999999998  899999998765    35667889999999999997654 4443 347999999999988633     4


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      .+..+..... ..|+     |++..+++++  .||.|++||..+++.+.                               
T Consensus       316 ~~~~~~~v~~-~~~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~-------------------------------  358 (420)
T 4gga_A          316 AVDAHSQVCS-ILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA-------------------------------  358 (420)
T ss_dssp             EEECSSCEEE-EEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred             eeccccceee-eeec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE-------------------------------
Confidence            4555555544 4454     7888888775  69999999987665431                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                              .+.+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus       359 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~  394 (420)
T 4gga_A          359 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF  394 (420)
T ss_dssp             ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred             ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence                                    345788999999999999999 999999999999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.2e-32  Score=281.67  Aligned_cols=306  Identities=12%  Similarity=0.179  Sum_probs=235.9

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      ++++++++|++|+.||+|++||+.+++....+.+|...+.++.|+++                           + .+++
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---------------------------~-~l~s  178 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---------------------------G-ILVS  178 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST---------------------------T-EEEE
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC---------------------------C-EEEE
Confidence            45557889999999999999999999999999877766665555433                           3 7999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCCCce------------------
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLTGSL------------------  151 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~v~iwd~~~~~~------------------  151 (579)
                      |+.||.|++||+.+++.+..+ .+|.+.|.+++|+  ++++++++++.|+.|++||+.++..                  
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            999999999999999988666 6899999999998  5778999999999999999987653                  


Q ss_pred             -----eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       152 -----~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                           +..+.+|...+.++  +++++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus       258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i  334 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI  334 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred             CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence                 45677788888776  57788999988  8999999999999999999999999999999999999988 79999


Q ss_pred             EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe-eEEeeeccCC
Q 008041          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT-KILSSSEDVN  303 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  303 (579)
                      ++||+.+++     ++..+..+...+.++.++       +.+|++++.||.|++||+.+++........ .....   .+
T Consensus       335 ~vwd~~~~~-----~~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~  399 (464)
T 3v7d_B          335 RIWDLENGE-----LMYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT---TF  399 (464)
T ss_dssp             EEEETTTTE-----EEEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEE---EE
T ss_pred             EEEECCCCc-----EEEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEE---EE
Confidence            999999876     335555666667777763       589999999999999999987655432111 11111   13


Q ss_pred             cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE-EecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK-ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +++++    .+++++ ++.++.++        ......... +..|...|.+++|+  +..+.++++.|+.+.+|-+
T Consensus       400 ~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          400 YVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred             EeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence            44554    666665 55544432        222222222 45688889999997  4444367776776665543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.2e-33  Score=288.76  Aligned_cols=281  Identities=14%  Similarity=0.081  Sum_probs=205.9

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEE--EEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         4 ~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..|  .|++|+| ++++||+|+.||+|+|||+.++...  ..+.+|...                  ++++.|.|.+   
T Consensus       120 ~~V--~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~------------------V~~l~f~p~~---  176 (435)
T 4e54_B          120 RRA--TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS------------------ITGLKFNPLN---  176 (435)
T ss_dssp             SCE--EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC------------------CCEEEECSSC---
T ss_pred             CCE--EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC------------------EEEEEEeCCC---
Confidence            447  5569999 5679999999999999999877543  334444444                  4555665433   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                           +.+|++|+.||.|++||+.++...... ...+...+.+++|+|++++|++|+.||.|++||+. ++.+..+.+|.
T Consensus       177 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~  250 (435)
T 4e54_B          177 -----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK  250 (435)
T ss_dssp             -----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred             -----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence                 678999999999999999877653222 12344568899999999999999999999999985 66778889999


Q ss_pred             CCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE---eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       160 ~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~---~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ..|++++|+|+++ ++++++  +.|++||+++.+....   ..+|..+|++++|+|+|++|++++ .|+.|++||+.++.
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~  329 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD  329 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence            9999999999987 566776  8999999998765433   367999999999999999999998 79999999998876


Q ss_pred             cccceeeeeeecCc------eeEEeEEecCCcccCCCcEEEEEEc------------CCeEEEEEcCCceeecccCCeeE
Q 008041          234 KQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISE------------TGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       234 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      ...    ....+..      ..+. ..+.     |++..++++..            ++.|++||..+++.+...     
T Consensus       330 ~~~----~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-----  394 (435)
T 4e54_B          330 CPL----GLIPHPHRHFQHLTPIK-AAWH-----PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL-----  394 (435)
T ss_dssp             SEE----EECCCCCCCCSSSCCCB-CEEC-----SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-----
T ss_pred             cce----EEecccccccccceeEE-EEEc-----CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-----
Confidence            431    1111111      1111 2232     55555555532            245666666555432111     


Q ss_pred             EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeeccccceecc
Q 008041          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLKSK  374 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~~~  374 (579)
                                                                       ..+|...|.++ +|+|||.+| ++|+ |+.+
T Consensus       395 -------------------------------------------------~~~~~~~v~s~~~fspdg~~l-asg~-d~~i  423 (435)
T 4e54_B          395 -------------------------------------------------YDPESSGISSLNEFNPMGDTL-ASAM-GYHI  423 (435)
T ss_dssp             -------------------------------------------------CCSSCCCCCCEEEECTTSSCE-EEEC-SSEE
T ss_pred             -------------------------------------------------eCCCCCcEEEEEEECCCCCEE-EEEc-CCcE
Confidence                                                             11455567776 699999999 8887 7899


Q ss_pred             cceeee
Q 008041          375 RGRYVQ  380 (579)
Q Consensus       375 ~~w~~~  380 (579)
                      ++|++.
T Consensus       424 ~iW~~~  429 (435)
T 4e54_B          424 LIWSQQ  429 (435)
T ss_dssp             EECCCC
T ss_pred             EEEECC
Confidence            999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-32  Score=264.61  Aligned_cols=272  Identities=19%  Similarity=0.228  Sum_probs=224.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++| |++++|++|+.||.|++||+.++.....+..|...+..+.|+++                       
T Consensus        17 h~~~v--~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------   70 (313)
T 3odt_A           17 HDQDV--RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-----------------------   70 (313)
T ss_dssp             CSSCE--EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-----------------------
T ss_pred             CCCCc--EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-----------------------
Confidence            45778  45599 99999999999999999999999988888766655554444443                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++++.+|.|++|++...   +....+ .+|...|.++.|  +++++++++.|+.|++||  .++....+..|
T Consensus        71 ----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~  141 (313)
T 3odt_A           71 ----KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH  141 (313)
T ss_dssp             ----TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred             ----CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence                788999999999999998764   334344 679999999999  577999999999999999  67888889999


Q ss_pred             CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ...+.+++|+| +++.+++++  +.|++||  .++....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDV  217 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCE
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhh
Confidence            99999999998 899999888  8999999  5566777776 899999999999998 77776 799999999998763


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                           +..+..+...+..+.|+     |++ .|++++.||.|++||+.+++.+.                          
T Consensus       218 -----~~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------------------  260 (313)
T 3odt_A          218 -----LRTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ--------------------------  260 (313)
T ss_dssp             -----EEEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE--------------------------
T ss_pred             -----hhhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE--------------------------
Confidence                 34555566677788887     888 58999999999999987654321                          


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                   .+..|...+.+++|+|||.+  ++++.|+.+++|++.
T Consensus       261 -----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          261 -----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQE  295 (313)
T ss_dssp             -----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESC
T ss_pred             -----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCC
Confidence                                         23356668999999999994  457889999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=289.38  Aligned_cols=315  Identities=13%  Similarity=0.136  Sum_probs=223.1

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC---CeE---EEEeccCccccccccccccccccccccccceEEee
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQV---QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      ++++|  .+++|+| +|++||+|+.||+|+|||+.+   +..   ...+ .|                  ...+.++.|.
T Consensus        62 h~~~V--~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h------------------~~~v~~~~~~  120 (437)
T 3gre_A           62 EPNSI--TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC------------------SSTVTQITMI  120 (437)
T ss_dssp             TTSCE--EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-EC------------------SSCEEEEEEC
T ss_pred             CCCce--EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cC------------------CCCEEEEEEe
Confidence            35788  5559999 999999999999999999876   331   1111 12                  3345666666


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEcc---CCeEEEEe--------c-CC--CCCCEEEEE--EccCCCEEEEEeCC
Q 008041           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGAD  138 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~---~~~~~~~~--------~-~~--h~~~V~~l~--~~~~~~~l~s~~~d  138 (579)
                      +.         +.++++|+.||.|++||+.   +++.....        . ..  +...+.++.  +++++.++++++.|
T Consensus       121 ~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          121 PN---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             TT---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred             CC---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence            52         7789999999999999995   44433211        1 11  566777777  56889999999999


Q ss_pred             CcEEEEeCCCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe----c
Q 008041          139 GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS----D  209 (579)
Q Consensus       139 ~~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s----~  209 (579)
                      +.|++||+++++.+..+..  |...|++++|+|+++++++|+  |.|++||+++++.+.++. .|..+|.+++|+    |
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK  271 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred             CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence            9999999999999999988  788999999999999999998  899999999999999886 788899999665    4


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec--------------------------CceeEEeEEecCCcccCC
Q 008041          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--------------------------PAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~  263 (579)
                      ++.++++++ .|+.|++||+.+++..     ..+..                          +...+.++.|+      +
T Consensus       272 ~~~~l~s~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~  339 (437)
T 3gre_A          272 NSVIVVGGS-SKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------N  339 (437)
T ss_dssp             TEEEEEEES-TTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------T
T ss_pred             CccEEEEEc-CCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------C
Confidence            677888876 7999999999987632     11111                          33335556664      5


Q ss_pred             CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEe-CCCCCcee
Q 008041          264 GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSF  342 (579)
Q Consensus       264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-g~~~~~~~  342 (579)
                      +.+|++++.||.|++||+.+++.+............   +.+.           ..     .......... ........
T Consensus       340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~  400 (437)
T 3gre_A          340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIPT-----------QV-----TANLTMLLRKMKRTSTHSV  400 (437)
T ss_dssp             TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEEE-----------EE-----ETTEEEEEEECC-------
T ss_pred             ceEEEecCCCCeEEEEECCCcccceEEecccccCce---EEEE-----------Ee-----ecceEEEEEeccccccccc
Confidence            689999999999999999998776544332110000   0000           00     0011111111 00111112


Q ss_pred             EEEecCCCCcEEEeecCC--cceeeccccceeccccee
Q 008041          343 QKILVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       343 ~~~~~h~~~v~~~~~s~d--g~~l~~s~s~d~~~~~w~  378 (579)
                      .....|...|.+++|+++  +.+| +||+.|+.+++|+
T Consensus       401 ~~~~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~  437 (437)
T 3gre_A          401 DDSLYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ  437 (437)
T ss_dssp             ------CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred             CcccccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence            344569999999999998  7788 9999999999995

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=306.84  Aligned_cols=339  Identities=10%  Similarity=0.026  Sum_probs=237.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+| |++|++++.|++|+|||+.+++++..+. +...+.++.|+++                        
T Consensus        58 ~~~V--~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~------------------------  109 (902)
T 2oaj_A           58 RSAI--KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDAS------------------------  109 (902)
T ss_dssp             CCCE--EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTT------------------------
T ss_pred             CCCE--EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCC------------------------
Confidence            3578  4559999 8899999999999999999999888775 3334444444443                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEE----------EecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCce
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~----------~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~  151 (579)
                         +.++++|+.||.|++||+.+++...          ....+|.++|++++|+|+ +..+++|+.||.| +||+++++.
T Consensus       110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~  185 (902)
T 2oaj_A          110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI  185 (902)
T ss_dssp             ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred             ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence               7889999999999999999987631          123679999999999996 4689999999999 999999998


Q ss_pred             eeEeecC------------------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE--e---ec---------
Q 008041          152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG---------  197 (579)
Q Consensus       152 ~~~~~~~------------------~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~--~---~~---------  197 (579)
                      +..+..|                  ...|++++|+|+|++|++++  |.|++||+++++++..  +   ..         
T Consensus       186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~  265 (902)
T 2oaj_A          186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR  265 (902)
T ss_dssp             EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred             EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence            8888765                  46799999999999999998  8999999999987653  2   12         


Q ss_pred             ----CCCCEEEEEEec----CC-CEEEEEecCC-----CeEEEEEcCC------------------Cccc---c------
Q 008041          198 ----HPGAVRFMTFSD----NG-KYVLSSAVGE-----RYIALWRTDG------------------VKKQ---S------  236 (579)
Q Consensus       198 ----h~~~v~~l~~s~----~~-~~l~s~~~~d-----~~i~vwd~~~------------------~~~~---~------  236 (579)
                          |..+|.+++|++    ++ ..+++++ .|     +.+.+|++..                  .+..   .      
T Consensus       266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  344 (902)
T 2oaj_A          266 DSSTNAAKISKVYWMCENNPEYTSLLISHK-SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP  344 (902)
T ss_dssp             CCSSCCCEEEEEEEEECSSTTEEEEEEEEE-CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred             CCccccCCeeEEEEEecCCCCCCEEEEeCC-CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence                345799999964    43 3455554 34     2677777310                  0000   0      


Q ss_pred             -------------------c-----------eeeeee----------------ecCceeEEeEEec--------------
Q 008041          237 -------------------A-----------SCVLAM----------------EHPAVFMDCRCID--------------  256 (579)
Q Consensus       237 -------------------~-----------~~~~~~----------------~~~~~~~~~~~~~--------------  256 (579)
                                         .           ..++.+                ..+...+.++.++              
T Consensus       345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~  424 (902)
T 2oaj_A          345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA  424 (902)
T ss_dssp             EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence                               0           000000                0000111222221              


Q ss_pred             ---------------CCcccCCCcEEEEEEcCCeEEEEEcCCceeecc--c---------CCeeEEeeeccCCccccccc
Q 008041          257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--T---------KATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       257 ---------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~  310 (579)
                                     ...++|++++|++|+.||+|++||+.++.....  +         ..+...+.+.. |+|+++  
T Consensus       425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva-fspdg~--  501 (902)
T 2oaj_A          425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS-FAAETL--  501 (902)
T ss_dssp             BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE-EETTTT--
T ss_pred             cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE-ecCCCC--
Confidence                           012348999999999999999999988742110  0         01112223322 788888  


Q ss_pred             chhhhhccccceecCCceEEEEEeCC-------C---------C---------------------CceeEEEecCCCCcE
Q 008041          311 TAAIFAAKLQDIVKPASVHTFVAYGL-------L---------L---------------------KPSFQKILVNSGEDI  353 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~-------~---------~---------------------~~~~~~~~~h~~~v~  353 (579)
                        .+++|+.|+.+++++..-...++.       .         .                     ..+...+.+|...|.
T Consensus       502 --~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~  579 (902)
T 2oaj_A          502 --ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS  579 (902)
T ss_dssp             --EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred             --eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence              899999999777765321100000       0         0                     023556778999999


Q ss_pred             EEeecCCcceeeccccceecccceeeee
Q 008041          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      +++||||| +| ++|+.|+++++|++..
T Consensus       580 svafSpdG-~l-Asgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          580 AINNSNIG-FV-GIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             EEEECBTS-EE-EEEETTSEEEEEETTT
T ss_pred             EEEecCCc-EE-EEEeCCCcEEEEECCC
Confidence            99999999 98 9999999999999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=270.44  Aligned_cols=252  Identities=15%  Similarity=0.191  Sum_probs=199.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..+|  .+++|+|+|++||+|+.|++|+|||..++.  +...+.+|...+.++.|+++                      
T Consensus        61 ~~~v--~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~----------------------  116 (345)
T 3fm0_A           61 QRTV--RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS----------------------  116 (345)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----------------------
T ss_pred             CCcE--EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----------------------
Confidence            4578  455999999999999999999999988764  56677777666665555554                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~  156 (579)
                           +.+|++|+.|+.|++||+.++..  ......+|...|.+++|+|++++|++++.|++|++||..+++  +..++.
T Consensus       117 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~  191 (345)
T 3fm0_A          117 -----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE  191 (345)
T ss_dssp             -----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             -----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence                 78899999999999999987642  223447899999999999999999999999999999998775  456788


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---------------eeeEEeec-CCCCEEEEEEecCCCEEEEEe
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~---------------~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      +|...|.+++|+|+|++|++++  ++|++||....               +++.++.+ |...|.+++|+|++..|++++
T Consensus       192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  271 (345)
T 3fm0_A          192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC  271 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence            9999999999999999999998  89999996321               33455555 889999999999999999988


Q ss_pred             cCCCeEEEEEcCCCccccc---eee-eeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceeecc
Q 008041          219 VGERYIALWRTDGVKKQSA---SCV-LAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                       .|+.|++|+.........   ... .....+...+.++.|+     |++ .+|++++.||+|++|+..+.+.+..
T Consensus       272 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          272 -GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             -TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC------
T ss_pred             -CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence             799999999876542211   011 1122455667888887     887 5999999999999999988776543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=277.79  Aligned_cols=300  Identities=12%  Similarity=0.073  Sum_probs=227.2

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| +|++||+|+.||.|+|||+.++.....+.......  .  ......+| ...+.++.|.+.+   
T Consensus        42 h~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~v~~~~~~~~~---  111 (408)
T 4a11_B           42 HGGGI--NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--I--GRDHPDVH-RYSVETVQWYPHD---  111 (408)
T ss_dssp             CSSCE--EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--E--CTTCTTCC-SSCEEEEEECTTC---
T ss_pred             cCCcE--EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--c--cccccccC-CCcEEEEEEccCC---
Confidence            46788  5569999 99999999999999999999876443332100000  0  00000112 3456777787643   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                           +.++++++.+|.|++||+.+++....+  .+...+.++.|+|.   +.++++++.|+.|++||+.+++.+..+..
T Consensus       112 -----~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          112 -----TGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             -----TTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             -----CcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence                 667999999999999999999987666  37788999999984   44899999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCe-eeEEe---------------ecCCCCEEEEEEecCCCEEEEEe
Q 008041          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~-~~~~~---------------~~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      |...|.+++|+|+++ ++++++  |.|++||++++. .+..+               .+|...|.+++|+|++++|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999999999998 477776  899999998765 34444               57889999999999999999988


Q ss_pred             cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee
Q 008041          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (579)
                       .|+.|++||+.+++.......................     ..+..+++++.||.|++||+.+++.+.          
T Consensus       265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~----------  328 (408)
T 4a11_B          265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT----------  328 (408)
T ss_dssp             -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE----------
T ss_pred             -CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee----------
Confidence             7999999999987643110000111111122222222     445667778889999999987664431          


Q ss_pred             eccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                                   .+.+|...|.+++|+|||.+| ++++.|+.+++|+
T Consensus       329 ---------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~  362 (408)
T 4a11_B          329 ---------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWV  362 (408)
T ss_dssp             ---------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred             ---------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEe
Confidence                                                         234677889999999999999 9999999999999


Q ss_pred             ee
Q 008041          379 VQ  380 (579)
Q Consensus       379 ~~  380 (579)
                      +.
T Consensus       363 ~~  364 (408)
T 4a11_B          363 PS  364 (408)
T ss_dssp             EC
T ss_pred             CC
Confidence            85

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-32  Score=278.20  Aligned_cols=244  Identities=16%  Similarity=0.224  Sum_probs=199.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-------EEEEeccCccccccccccccccccccccccceEEeee
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ...|  .+++|+|+|++||+|+.|+.++|||+.+..       ....+.+|...+.                  ++.|.+
T Consensus       108 ~~~v--~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~------------------~~~~~~  167 (380)
T 3iz6_a          108 CPWV--MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS------------------SCQYVP  167 (380)
T ss_dssp             CTTC--CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC------------------CCBCCS
T ss_pred             CCCE--EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE------------------EEEEec
Confidence            4567  455999999999999999999999987542       1222334443333                  334443


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-CC
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TG  149 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~-~~  149 (579)
                      .+        +..+++|+.|+.|++||+.+++.+..+    ..+|...|.++.|++ ++++|++|+.|++|++||++ .+
T Consensus       168 ~~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~  239 (380)
T 3iz6_a          168 DQ--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS  239 (380)
T ss_dssp             SS--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred             CC--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence            32        456999999999999999999887554    257999999999987 88999999999999999998 55


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-------CCEEEEEEecCCCEEEEEecC
Q 008041          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      +.+..+.+|.+.|.+++|+|+|++|++|+  ++|++||+++++.+..+..+.       ..|.+++|+|+|+++++++ .
T Consensus       240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~  318 (380)
T 3iz6_a          240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-S  318 (380)
T ss_dssp             CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-T
T ss_pred             cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-C
Confidence            78888999999999999999999999998  899999999999988876543       2489999999999999987 7


Q ss_pred             CCeEEEEEcCCCccccceeeeee----ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          221 ERYIALWRTDGVKKQSASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      |+.|++||+..++..     ..+    ..+...+.++.|+     |+|.+|++|+.||+|++|++...+
T Consensus       319 dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          319 NGDCYVWDTLLAEMV-----LNLGTLQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             TSCEEEEETTTCCEE-----EEECCSCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCEEEEECCCCceE-----EEEecccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999999877633     222    3456667888888     999999999999999999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=269.50  Aligned_cols=242  Identities=10%  Similarity=0.103  Sum_probs=186.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCccccccccccccccccccccccceEEee
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      +.++|  .+++|+|+|++||+|+.|++|+|||...       .++...+.+|...+.++.|+++                
T Consensus        57 h~~~v--~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----------------  118 (330)
T 2hes_X           57 HKKAI--RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----------------  118 (330)
T ss_dssp             CCSCE--EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT----------------
T ss_pred             ccCCE--EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----------------
Confidence            35678  4559999999999999999999999853       3456666666665555555544                


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 008041           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-  149 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-  149 (579)
                                 +.+|++|+.|+.|++||+...    +++. .+.+|...|.+++|+|++++|++++.|++|++||..++ 
T Consensus       119 -----------g~~las~s~D~~v~iwd~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~  186 (330)
T 2hes_X          119 -----------GYYLATCSRDKSVWIWETDESGEEYECIS-VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD  186 (330)
T ss_dssp             -----------SCEEEEEETTSCEEEEECCTTCCCCEEEE-EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred             -----------CCEEEEEeCCCEEEEEeccCCCCCeEEEE-EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence                       788999999999999999532    3343 34789999999999999999999999999999998776 


Q ss_pred             -ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--------eeeEEeec-CCCCEEEEEEecCCCEEE
Q 008041          150 -SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       150 -~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~--------~~~~~~~~-h~~~v~~l~~s~~~~~l~  215 (579)
                       +++..+.+|...|.+++|+|+  +..+++++  ++|++||++++        .....+.+ |...|.+++|++++ +|+
T Consensus       187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~  265 (330)
T 2hes_X          187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA  265 (330)
T ss_dssp             EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred             eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence             678889999999999999998  67888887  89999998764        34555555 89999999999765 778


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeee--eecCceeEEeEEecCCcccC--CCcEEEEEEcCCeEEEEEcCC
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLA--MEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      +++ .|+.|++|+...++..   ....  ..|....+.++.|+     |  ++++|++++.||+|++||+++
T Consensus       266 s~~-~dg~v~iw~~~~~~~~---~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          266 SVG-ADGVLAVYEEVDGEWK---VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEE-TTSCEEEEEEETTEEE---EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred             EEe-CCCEEEEEEcCCCceE---EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence            887 7999999998765321   1112  22443367777787     7  689999999999999999764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.2e-32  Score=267.84  Aligned_cols=241  Identities=14%  Similarity=0.163  Sum_probs=197.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|++.++++|+.|++|++||+.+++....+.+|...+.++.|+++                        
T Consensus        76 ~~~V--~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~------------------------  129 (343)
T 2xzm_R           76 NHFV--SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD------------------------  129 (343)
T ss_dssp             SSCE--EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS------------------------
T ss_pred             CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC------------------------
Confidence            4567  55599999999999999999999999999999999888777776666665                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCc
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~----------~~l~s~~~d~~v~iwd~~~~~  150 (579)
                         +.++++++.||.|++||+...... ..  ..+|...|.+++|+|++          .++++++.|+.|++|| ..++
T Consensus       130 ---~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~  204 (343)
T 2xzm_R          130 ---NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQ  204 (343)
T ss_dssp             ---TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTE
T ss_pred             ---CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCc
Confidence               788999999999999999854332 22  23789999999999987          7899999999999999 4677


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      ....+.+|...|.+++|+|+|++|++|+  +.|++||+.+ ......+ .+...|.+++|+|++++++++  .|+.|++|
T Consensus       205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~--~d~~v~iw  281 (343)
T 2xzm_R          205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG--TDQGVKIF  281 (343)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE--ESSCEEEE
T ss_pred             eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE--CCCCEEEE
Confidence            7788999999999999999999999998  8999999954 4444444 356679999999999887654  47889999


Q ss_pred             EcCCCccccceeeeeee-----------cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          228 RTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      ++.+.+...   +..+.           .+...+.++.|+     |+|++|++|+.||.|++|+++++.
T Consensus       282 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          282 NLMTQSKAP---VCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             ESSSCCSCS---EEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EeCCCCCCc---eEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence            998765431   11111           234456778887     999999999999999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.8e-32  Score=293.21  Aligned_cols=310  Identities=13%  Similarity=0.139  Sum_probs=251.6

Q ss_pred             CCc-ccceEEEEcc--CCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCccccccccccccccccccccccceE
Q 008041            3 SSN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~-V~~l~~~fsp--dg~~lasg~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++ |  .+++|+|  +|++||+|+.||.|+|||+.++        .....+..|...+..+.|+++             
T Consensus        63 ~~~~v--~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------  127 (615)
T 1pgu_A           63 GSSVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-------------  127 (615)
T ss_dssp             TTSCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-------------
T ss_pred             CCceE--EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC-------------
Confidence            455 7  5569999  9999999999999999999755        666667666655555555544             


Q ss_pred             EeeecccccccccCCcEEEEEECC----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeC
Q 008041           72 KWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDP  146 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~  146 (579)
                                    +.++++++.+    +.|++||  .++.+..+ .+|...|++++|+|+++ .+++++.|+.|++||+
T Consensus       128 --------------~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          128 --------------GRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             --------------SSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             --------------CCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence                          7788998887    6788888  55565455 68999999999999998 7999999999999999


Q ss_pred             CCCceeeEeecCCC---CeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEe-e---cCCCCEEEEEEecCCCEEEE
Q 008041          147 LTGSLLGKFRASTK---GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF-S---GHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       147 ~~~~~~~~~~~~~~---~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~-~---~h~~~v~~l~~s~~~~~l~s  216 (579)
                      .+++.+..+.+|..   .|.+++|+|+ ++++++++  |.|++||+++++.+..+ .   +|...|.++.|+ +++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~  269 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT  269 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred             CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence            99999999999999   9999999999 99999887  89999999999999998 6   899999999999 9999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecC----ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      ++ .|+.|++||+.+++..     ..+..+    ...+..+.+      +++.++++++.||.|++||+.+++.+.....
T Consensus       270 ~~-~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  337 (615)
T 1pgu_A          270 VG-ADATIRVWDVTTSKCV-----QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYELGHDEVLKTISG  337 (615)
T ss_dssp             EE-TTSEEEEEETTTTEEE-----EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred             Ec-CCCcEEEEECCCCcEE-----EEEcCCCCcccCceeEEEe------CCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence            88 7999999999987633     333332    233444445      4789999999999999999999887776665


Q ss_pred             eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008041          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~  372 (579)
                      +...+.+.. + ++       +++++.++.++.++..           .++  ..|...|.+++| +++..+ ++++.|+
T Consensus       338 ~~~~v~~~~-~-~~-------l~~~~~dg~i~~w~~~-----------~~~--~~~~~~v~~~~~-~~~~~l-~~~~~d~  393 (615)
T 1pgu_A          338 HNKGITALT-V-NP-------LISGSYDGRIMEWSSS-----------SMH--QDHSNLIVSLDN-SKAQEY-SSISWDD  393 (615)
T ss_dssp             CSSCEEEEE-T-TT-------TEEEETTSCEEETTTT-----------EEE--CCCCSCEEEEEC-CSTTCC-EEEETTT
T ss_pred             CCCCEEEEE-e-cC-------cEEECCCCeEEEEEch-----------hhc--CcccCceEEEEE-CCCcEE-EEEeCCC
Confidence            544444433 2 22       8888888877776633           232  678999999999 667788 8999999


Q ss_pred             cccceeeee
Q 008041          373 SKRGRYVQN  381 (579)
Q Consensus       373 ~~~~w~~~~  381 (579)
                      .+++|++..
T Consensus       394 ~i~~~~~~~  402 (615)
T 1pgu_A          394 TLKVNGITK  402 (615)
T ss_dssp             EEEETTEEE
T ss_pred             CEEEEEccc
Confidence            999999853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.6e-32  Score=267.22  Aligned_cols=275  Identities=13%  Similarity=0.192  Sum_probs=219.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE---ec--cCccccccccccccccccccccccceEEeeec
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---FA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.++|  .+++|+|++++|++++ ||.|++||+.++.....   +.  .+                  ...+.++.|.+.
T Consensus        50 h~~~v--~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~  108 (337)
T 1gxr_A           50 HGEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR------------------DNYIRSCKLLPD  108 (337)
T ss_dssp             CSSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT------------------TSBEEEEEECTT
T ss_pred             CCCce--EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCC------------------CCcEEEEEEcCC
Confidence            35678  5559999999999999 99999999987653221   11  22                  234556666653


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                               +.++++++.+|.|++||+.+++  .... ..+|...|.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus       109 ---------~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~  178 (337)
T 1gxr_A          109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             ---------SSEEEEEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------CCEEEEEcCCCcEEEEECCCCCcceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence                     7789999999999999999887  3333 367999999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      +..|...+.+++|+|+++++++++  |.|++||+++++.+..+. |...+.+++|+|+++++++++ .|+.|++||+...
T Consensus       179 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~  256 (337)
T 1gxr_A          179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP  256 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred             eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCC
Confidence            999999999999999999999987  899999999999887775 788999999999999999987 7999999999887


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      +..      ....+...+..+.|+     |++++|++++.||.|++||+.+++.+....... .+.+. .++++++    
T Consensus       257 ~~~------~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~-~~s~~~~----  319 (337)
T 1gxr_A          257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSC-DISVDDK----  319 (337)
T ss_dssp             CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEE-EECTTSC----
T ss_pred             CeE------EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEE-EECCCCC----
Confidence            532      334455567778887     999999999999999999999987764322111 11111 1466666    


Q ss_pred             hhhhccccceecCC
Q 008041          313 AIFAAKLQDIVKPA  326 (579)
Q Consensus       313 ~i~~~~~~~~~~~~  326 (579)
                      .+++++.++.++.+
T Consensus       320 ~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          320 YIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEEEETTSCEEEE
T ss_pred             EEEEecCCCeEEEE
Confidence            77888877655543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-32  Score=274.11  Aligned_cols=239  Identities=12%  Similarity=0.105  Sum_probs=187.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCccccccccccccccccccccccceEEeeecccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.|  .+++|+|++.++ +++.||+|+|||+.+++.....    .+|..                  .+.++.|.+.   
T Consensus        95 ~~V--~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~------------------~V~~v~~spd---  150 (357)
T 4g56_B           95 AGV--TDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDD------------------IVKTLSVFSD---  150 (357)
T ss_dssp             SCE--EEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSS------------------CEEEEEECSS---
T ss_pred             CCE--EEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCC------------------CEEEEEECCC---
Confidence            457  556999998654 6778999999999988754322    23333                  3455555543   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~--  156 (579)
                            +.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++. ++++++.|++|++||+++++....+.  
T Consensus       151 ------g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          151 ------GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence                  788999999999999999999988766 68999999999999875 68999999999999999988776544  


Q ss_pred             cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCC
Q 008041          157 ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .+...+.+++|+|++ .++++|+  +.|++||+++++.+.++.+|...|++++|+|++. +|++++ .|++|++||++++
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~  302 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFS  302 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSC
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCC
Confidence            456689999999975 5777776  8999999999999999999999999999999874 677776 7999999999887


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEcCCce
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      +.     +..+.| ...+..++|+     | ++.+|++++.||+|++|++.+..
T Consensus       303 ~~-----~~~~~H-~~~V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          303 EV-----FRDLSH-RDFVTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EE-----EEECCC-SSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECC---
T ss_pred             cE-----eEECCC-CCCEEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCCC
Confidence            53     234444 4456777887     7 78999999999999999986543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.9e-33  Score=271.80  Aligned_cols=246  Identities=14%  Similarity=0.164  Sum_probs=194.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++++|  .+++|+|+|++||+|+.|++|+|||+.++.  ....+.+|...+.++.|+++                 .+  
T Consensus        12 H~~~V--~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~-----------------~~--   70 (316)
T 3bg1_A           12 HEDMI--HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP-----------------MY--   70 (316)
T ss_dssp             --CCE--EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG-----------------GG--
T ss_pred             ccCeE--EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC-----------------CC--
Confidence            35678  555999999999999999999999998875  45667766665554444322                 11  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce---e
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---L  152 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~~---~  152 (579)
                            +.+|++|+.|+.|++||+.+++  .... ..+|...|++++|+|+  +.+|++|+.|++|++||+..+..   .
T Consensus        71 ------~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           71 ------GNILASCSYDRKVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             ------SSCEEEEETTSCEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             ------CCEEEEEECCCEEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence                  5679999999999999999874  3333 3689999999999998  78999999999999999987632   3


Q ss_pred             eEeecCCCCeeEEEEccC-----------------CCEEEEEC--CeEEEEECCCC---eeeEEeecCCCCEEEEEEecC
Q 008041          153 GKFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN  210 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~-----------------g~~l~~~~--~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~  210 (579)
                      ..+.+|...|.+++|+|+                 +++|++|+  +.|++||++.+   +.+.++.+|...|.+++|+|+
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence            456788889999999997                 46888887  89999999765   467788999999999999998


Q ss_pred             C----CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          211 G----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       211 ~----~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      +    ++|++++ .|++|++|++........ ....+..+...+..+.|+     |++.+|++++.||+|++|+..
T Consensus       224 ~~~~~~~las~s-~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          224 IGLPTSTIASCS-QDGRVFIWTCDDASSNTW-SPKLLHKFNDVVWHVSWS-----ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSCSCCEEEEEE-TTCEEEEEECSSTTCCCC-BCCEEEECSSCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCceEEEEc-CCCeEEEEEccCccccch-hhhhhhcCCCcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence            6    7888887 799999999976321100 011122334556677887     999999999999999999965

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.2e-31  Score=259.40  Aligned_cols=273  Identities=15%  Similarity=0.239  Sum_probs=216.4

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++||+++ +||+|. |++|+|||+.+|++...++.+..                ...++++.|.+.         +.+++
T Consensus        31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~----------------~~~V~~v~~~~~---------~~~l~   83 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQP----------------GEYISSVAWIKE---------GNYLA   83 (318)
T ss_dssp             EEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCST----------------TCCEEEEEECTT---------SSEEE
T ss_pred             EEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCC----------------CCeEEEEEECCC---------CCEEE
Confidence            5999986 787765 99999999999999887753221                223445555443         78899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p  169 (579)
                      +|+.||.|++||+.+++.+..+ .+|...+.++.+  ++..+++++.++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999999999988666 679988887665  5679999999999999998765 45667889999999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEE--EEecCCCeEEEEEcCCCccccceeee
Q 008041          170 DGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       170 ~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~--s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++++++++  +.|++||+++++.    ......|.+.|.++.++|++..++  .+++.++.|++||.......     .
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~  235 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S  235 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----E
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----c
Confidence            999999998  8999999998653    445567889999999999876433  23447899999999887533     2


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      ...+... +....+.     |++..+++++  .||.|++||+++++.+.                               
T Consensus       236 ~~~~~~~-v~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~-------------------------------  278 (318)
T 4ggc_A          236 AVDAHSQ-VCSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA-------------------------------  278 (318)
T ss_dssp             EEECSSC-EEEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred             cccceee-eeeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE-------------------------------
Confidence            3333333 4455565     7888877765  69999999987665432                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                              .+.+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus       279 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          279 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF  314 (318)
T ss_dssp             ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred             ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence                                    344788899999999999999 999999999999983

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.8e-31  Score=272.05  Aligned_cols=272  Identities=16%  Similarity=0.244  Sum_probs=221.9

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++++|++|++|+.||.|++||..+++....+.+|...+.                  ++.|   +        +.++++
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~------------------~l~~---~--------~~~l~s  188 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------------------CLQY---D--------ERVIIT  188 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------------------EEEC---C--------SSEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE------------------EEEE---C--------CCEEEE
Confidence            4556899999999999999999999999998887765554                  3443   1        678999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---eEeecCCCCeeEEEEc
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS  168 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~l~~~  168 (579)
                      |+.||.|++||+.+++.+..+ .+|...|.+++|+  +..+++|+.||.|++||+.+++..   ..+.+|...|.+++| 
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            999999999999999988666 6799999999996  459999999999999999988765   667889999999999 


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                       +++++++|+  |.|++||+++++.+.++.+|...|.++.|+  ++++++++ .|+.|++||+++++.     +..+..+
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h  335 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH  335 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence             678888887  899999999999999999999999999994  67888887 799999999998763     3455555


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      ...+.++.+       ++.+|++|+.||.|++||+.+++....               +.                    
T Consensus       336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~---------------~~--------------------  373 (435)
T 1p22_A          336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRA---------------PA--------------------  373 (435)
T ss_dssp             SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTS---------------CT--------------------
T ss_pred             cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCccc---------------cc--------------------
Confidence            555666654       678999999999999999865532100               00                    


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                 .......+.+|...|.+++|  ||.+| ++++.|+++++|++.+
T Consensus       374 -----------~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          374 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN  414 (435)
T ss_dssp             -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred             -----------cchheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence                       00122355678889999999  88899 9999999999999853

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.1e-31  Score=257.43  Aligned_cols=239  Identities=21%  Similarity=0.328  Sum_probs=201.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|++++|++|+.||.|++||+.+++++..+.+|...+.++.|+++                        
T Consensus        65 ~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------  118 (312)
T 4ery_A           65 KLGI--SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ------------------------  118 (312)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------------
T ss_pred             CCce--EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------------
Confidence            4567  55599999999999999999999999999999988877665555555444                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~  161 (579)
                         +.++++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|+++++++++.|+.|++||+.+++.+..+. .+...
T Consensus       119 ---~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  194 (312)
T 4ery_A          119 ---SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  194 (312)
T ss_dssp             ---SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred             ---CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence               788999999999999999999887666 6799999999999999999999999999999999998887764 45568


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE--EEEe-cCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~--l~~s-~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      +.+++|+|+++++++++  +.|++||+++++.+..+.+|...+..  ..++ +++.++++++ .|+.|++||+.+++.  
T Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~--  271 (312)
T 4ery_A          195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI--  271 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE--
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh--
Confidence            99999999999999988  89999999999999999988765433  2344 6778888877 799999999988763  


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcC
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~  282 (579)
                         +..+..+...+..+.|+     |++.++++++  .||+|++|+.+
T Consensus       272 ---~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          272 ---VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ---EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred             ---hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence               34555566666777787     9999999997  59999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-31  Score=297.35  Aligned_cols=244  Identities=14%  Similarity=0.125  Sum_probs=206.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+|||+.+++....+.+|...+.++.|+++                       
T Consensus        54 ~~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------  108 (814)
T 3mkq_A           54 TETPV--RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-----------------------  108 (814)
T ss_dssp             CSSCE--EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred             CCCcE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC-----------------------
Confidence            35678  55599999999999999999999999999999988877766665555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-  159 (579)
                          +..+++++.+|.|++||+.++........+|...|.+++|+| +++.+++++.||.|++||+.++.....+..+. 
T Consensus       109 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~  184 (814)
T 3mkq_A          109 ----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE  184 (814)
T ss_dssp             ----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred             ----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence                778999999999999999988444445578999999999999 88899999999999999999888887777655 


Q ss_pred             CCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          160 KGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       160 ~~v~~l~~~p--~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ..+.+++|+|  +++++++++  |.|++||+++++.+.++.+|...|.+++|+|+++++++++ .||.|++||+.+++. 
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~-  262 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKV-  262 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSE-
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE-
Confidence            7999999999  999999998  8999999999999999999999999999999999999988 799999999988763 


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcE-EEEEEcCCeEEEEEcCCce
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~  285 (579)
                          ...+..+...+.++.|+     |++.. +++++.++.+.+|++....
T Consensus       263 ----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          263 ----EKTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             ----EEEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             ----EEEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCC
Confidence                34555555667777777     88763 3555567788899876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-32  Score=278.01  Aligned_cols=246  Identities=13%  Similarity=0.162  Sum_probs=204.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .++|  .+++|+|++++|++|+.||.|++||+.+    ......+.+|...+.                  ++.|.+.+ 
T Consensus        67 ~~~v--~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~-  125 (416)
T 2pm9_A           67 DSKF--NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK------------------TVKFNAKQ-  125 (416)
T ss_dssp             SSCE--EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC------------------EEEECSSS-
T ss_pred             CCce--EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE------------------EEEEcCCC-
Confidence            4567  5569999999999999999999999987    347777766655444                  45554432 


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCe------EEEE--ecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 008041           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWR--LSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~--~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~  149 (579)
                             +.++++++.||.|++||+.+++      ....  ...+|...|.+++|+|+ +.++++++.|+.|++||++++
T Consensus       126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  198 (416)
T 2pm9_A          126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK  198 (416)
T ss_dssp             -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred             -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence                   5679999999999999999886      3222  23578999999999999 788999999999999999999


Q ss_pred             ceeeEeecC------CCCeeEEEEccCC-CEEEEEC--C---eEEEEECCCC-eeeEEee-cCCCCEEEEEEec-CCCEE
Q 008041          150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV  214 (579)
Q Consensus       150 ~~~~~~~~~------~~~v~~l~~~p~g-~~l~~~~--~---~i~vwd~~~~-~~~~~~~-~h~~~v~~l~~s~-~~~~l  214 (579)
                      +.+..+..+      ...|.+++|+|++ .++++++  +   .|++||++++ +.+..+. +|...|.+++|+| ++++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred             CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence            999888876      6799999999997 5777777  5   9999999986 6677787 8999999999999 89999


Q ss_pred             EEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceee
Q 008041          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       215 ~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      ++++ .|+.|++||+.+++.     +..+..+...+..+.|+     |++ .+|++++.||.|++||+.++...
T Consensus       279 ~s~~-~dg~v~~wd~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          279 LSSG-RDNTVLLWNPESAEQ-----LSQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEE-SSSEEEEECSSSCCE-----EEEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             EEEe-CCCCEEEeeCCCCcc-----ceeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            9988 799999999998763     34555666667778887     888 89999999999999999887644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.7e-31  Score=261.93  Aligned_cols=253  Identities=15%  Similarity=0.201  Sum_probs=203.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      ++++|  .+++|+|+|++||+|+.||.|+|||+.++    +....+.+|...+                  +++.|.+..
T Consensus        10 H~~~v--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~   69 (351)
T 3f3f_A           10 HDDLV--HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI------------------VAIDWASPE   69 (351)
T ss_dssp             CSSCE--EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCE------------------EEEEECCGG
T ss_pred             cccce--eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcE------------------EEEEEcCCC
Confidence            46788  55599999999999999999999999876    4556666555444                  455555431


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeC
Q 008041           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~  146 (579)
                             ++.+|++|+.||.|++||+.++         +.+..+ .+|...|.+++|+|+  ++++++++.||.|++||+
T Consensus        70 -------d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           70 -------YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             -------GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             -------CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence                   0678999999999999999987         334344 679999999999999  999999999999999999


Q ss_pred             CCCceeeEee-------------cCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEE
Q 008041          147 LTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMT  206 (579)
Q Consensus       147 ~~~~~~~~~~-------------~~~~~v~~l~~~p~---g~~l~~~~--~~i~vwd~~~~~~--~~~~~~h~~~v~~l~  206 (579)
                      ++++.+..+.             .|...+.+++|+|+   +..+++++  +.+.+|+...++.  +..+.+|...|.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  221 (351)
T 3f3f_A          142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS  221 (351)
T ss_dssp             SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred             CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence            9887655543             56779999999997   88998888  7887787777664  777889999999999


Q ss_pred             EecCC----CEEEEEecCCCeEEEEEcCCCccc-----------------------------------------cceeee
Q 008041          207 FSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCVL  241 (579)
Q Consensus       207 ~s~~~----~~l~s~~~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~~  241 (579)
                      |+|++    ++|++++ .|+.|++||++.....                                         ....+.
T Consensus       222 ~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS  300 (351)
T ss_dssp             ECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred             ECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence            99998    7888887 7999999999864210                                         012344


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      .+..+...+..+.|+     |++++|++++.||.|++||+.+++.+.
T Consensus       301 ~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          301 EHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             EECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             EEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchh
Confidence            455566677888888     999999999999999999999876654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-31  Score=265.31  Aligned_cols=278  Identities=14%  Similarity=0.122  Sum_probs=219.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+|||+.++.   ....+..|..                  .+.++.|.+.  
T Consensus        10 h~~~v--~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~--   67 (342)
T 1yfq_A           10 PKDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH------------------PLLCCNFIDN--   67 (342)
T ss_dssp             CSSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS------------------CEEEEEEEES--
T ss_pred             CCCcE--EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC------------------ceEEEEECCC--
Confidence            45678  556999999999999999999999998876   2233333333                  4556666653  


Q ss_pred             ccccccCCc-EEEEEECCCeEEEEEc-cCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------
Q 008041           79 KKKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------  148 (579)
Q Consensus        79 ~~~~~~~~~-~l~~~~~~g~i~iwd~-~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~------  148 (579)
                             +. ++++|+.+|.|++||+ .+++.  ....+  |...|.+++|+| ++++++++.|+.|++||+++      
T Consensus        68 -------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  137 (342)
T 1yfq_A           68 -------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             -------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             -------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence                   67 8999999999999999 88766  33467  999999999999 99999999999999999987      


Q ss_pred             ---CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-Cee--eEEeecCCCCEEEEEEec-CCCEEEEEec
Q 008041          149 ---GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAV  219 (579)
Q Consensus       149 ---~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s~~~  219 (579)
                         ++++..+. |...|.+++|+|++  +++++  +.|++||+++ +..  ......|...|.+++|+| +++++++++ 
T Consensus       138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-  213 (342)
T 1yfq_A          138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-  213 (342)
T ss_dssp             EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred             cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence               77777777 88899999999988  55555  8999999998 543  334557889999999999 999999988 


Q ss_pred             CCCeEEEEEcCCC--ccccceeeeeeecCc---------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          220 GERYIALWRTDGV--KKQSASCVLAMEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       220 ~d~~i~vwd~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      .|+.|++|+++..  ... ......+..+.         ..+..+.|+     |++++|++++.||.|++||+.+++.+.
T Consensus       214 ~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTSEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhHhh
Confidence            7999999999876  100 00122333332         367778887     999999999999999999988765432


Q ss_pred             ccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecc
Q 008041          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMS  367 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s  367 (579)
                      .                                                       +.+| ...|.+++  |||.+| ++
T Consensus       288 ~-------------------------------------------------------~~~~h~~~v~~~~--~~~~~l-~s  309 (342)
T 1yfq_A          288 N-------------------------------------------------------FAKFNEDSVVKIA--CSDNIL-CL  309 (342)
T ss_dssp             E-------------------------------------------------------CCCCSSSEEEEEE--ECSSEE-EE
T ss_pred             h-------------------------------------------------------hhcccCCCceEec--CCCCeE-EE
Confidence            1                                                       1244 66788888  999999 99


Q ss_pred             ccceec-ccceee
Q 008041          368 QSLLKS-KRGRYV  379 (579)
Q Consensus       368 ~s~d~~-~~~w~~  379 (579)
                      ++.|++ .+.++.
T Consensus       310 ~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          310 ATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECTHHHHCSSS
T ss_pred             EecCCcccccccc
Confidence            999998 666653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-31  Score=272.10  Aligned_cols=236  Identities=14%  Similarity=0.143  Sum_probs=198.2

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ..|+|+|++||+|+.||.|+|||+.+++....+.+|...+.++.|+++                           +.+++
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------~~~l~  155 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---------------------------GEALI  155 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---------------------------SSEEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC---------------------------CCEEE
Confidence            378999999999999999999999999998887777666665555554                           77899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC---CCCee----
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS----  163 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~v~----  163 (579)
                      +|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|+.|++||+++++.+..+..+   ...+.    
T Consensus       156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            9999999999999999887666 689999999999999999999999999999999999998888753   33444    


Q ss_pred             -----------------EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCC-EEEEEecCCC
Q 008041          164 -----------------CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER  222 (579)
Q Consensus       164 -----------------~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~-~l~s~~~~d~  222 (579)
                                       +++|+|+|+++++++  |.|++||+++++.+..+. +|...|.+++|+|+++ +|++++ .|+
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg  313 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG  313 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence                             455578999999988  899999999998877764 5889999999999999 888887 799


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .|++||+++++..   ......++...+.++++      +++.+|++++.||.|++|++...
T Consensus       314 ~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          314 MLAQWDLRSPECP---VGEFLINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEEEETTCTTSC---SEEEEESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred             eEEEEEcCCCcCc---hhhhhccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence            9999999987542   11222345666777766      57889999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.6e-31  Score=266.82  Aligned_cols=247  Identities=13%  Similarity=0.207  Sum_probs=203.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++|++|+.||.|++||+.+++....+.+|...                  +.++.|.        
T Consensus       134 ~~~v--~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------v~~~~~~--------  185 (401)
T 4aez_A          134 STYV--ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------------VGCLSWN--------  185 (401)
T ss_dssp             TCCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------------EEEEEEE--------
T ss_pred             CCCE--EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------------eEEEEEC--------
Confidence            4677  55699999999999999999999999999999888765543                  3455552        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++|+.+|.|++||+...........+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|
T Consensus       186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  262 (401)
T 4aez_A          186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV  262 (401)
T ss_dssp             ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred             ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence               56899999999999999995443334446899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCcccc
Q 008041          163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS  236 (579)
Q Consensus       163 ~~l~~~p~g~-~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~~d~~i~vwd~~~~~~~~  236 (579)
                      .+++|+|++. ++++++    +.|++||+++++.+..+. |...|.+++|+|+++++++++ ..|+.|++|++.+++.. 
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-  340 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-  340 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence            9999999775 555542    899999999999988886 678899999999999998853 36999999999886533 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                        ....+..+...+..+.|+     |++.+|++++.||.|++||+.+++.+..
T Consensus       341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC------
T ss_pred             --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence              334445556667777887     9999999999999999999998877654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-31  Score=272.56  Aligned_cols=274  Identities=11%  Similarity=0.131  Sum_probs=223.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++|++|+.||.|++|| .++.....+..|...+..+.|+++                        
T Consensus       108 ~~~v--~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~------------------------  160 (425)
T 1r5m_A          108 TNQV--TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD------------------------  160 (425)
T ss_dssp             CBCE--EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT------------------------
T ss_pred             CCce--EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC------------------------
Confidence            3478  5669999999999999999999999 678888888776665555555444                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC---------------EEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~---------------V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                         +.++++++.+|.|++||+.+++.+..+ ..|...               +.++.|+|++ .+++++.|+.|++||+.
T Consensus       161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          161 ---GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT  235 (425)
T ss_dssp             ---SSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred             ---CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence               778999999999999999999987666 445555               9999999975 58899999999999999


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      +++.+..+..|...|.+++|+|+++++++++  +.|++||+++++.+..+.+|...|.++.|+|++ ++++++ .|+.|+
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~  313 (425)
T 1r5m_A          236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR  313 (425)
T ss_dssp             CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred             CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence            9999999999999999999999999999988  899999999999999999999999999999999 888887 799999


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce--------------------
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--------------------  285 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------  285 (579)
                      +||+.+++.     +..+..+...+..+.|+     |++.+|++++.||.|++||+.+++                    
T Consensus       314 i~d~~~~~~-----~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (425)
T 1r5m_A          314 LWSLKQNTL-----LALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP  383 (425)
T ss_dssp             EEETTTTEE-----EEEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred             EEECCCCcE-----eEecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence            999988763     34455556667778887     999999999999999999998887                    


Q ss_pred             eecccCCeeE--EeeeccCCcccccccchhhhhccccceecC
Q 008041          286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       286 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      .+........  .+.... ++++++    .+++++.++.++.
T Consensus       384 ~~~~~~~~~~~~~v~~~~-~s~~~~----~l~~~~~dg~i~i  420 (425)
T 1r5m_A          384 LYASYQSSQDNDYIFDLS-WNCAGN----KISVAYSLQEGSV  420 (425)
T ss_dssp             EEEEECCTTCCCCEEEEE-ECTTSS----EEEEEESSSCCEE
T ss_pred             hhhhhcCcccCCceEEEE-ccCCCc----eEEEEecCceEEE
Confidence            4544443322  222222 566666    6777777665444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-31  Score=264.75  Aligned_cols=250  Identities=16%  Similarity=0.200  Sum_probs=203.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++|+|+|++||+|+.||.|+|||+.  +++....+.+|...+.                  ++.|.+..  
T Consensus        10 h~~~v--~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~--   67 (379)
T 3jrp_A           10 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW------------------RVDWAHPK--   67 (379)
T ss_dssp             CCCCE--EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE------------------EEEECCGG--
T ss_pred             CcccE--EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE------------------EEEeCCCC--
Confidence            45788  555999999999999999999999998  5566677766655444                  55554321  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~  153 (579)
                           ++.++++|+.||.|++||+.+++  .+..+ .+|...|.+++|+|+  ++++++++.|+.|++||+.++.  ...
T Consensus        68 -----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           68 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             -----GCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             -----CCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence                 16789999999999999999987  44333 679999999999999  9999999999999999998873  344


Q ss_pred             EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecC---C
Q 008041          154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---G  211 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~---~  211 (579)
                      .+..|...|.+++|+|             +++++++++  +.|++||+++++    ....+.+|...|.+++|+|+   +
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            5778899999999999             689999988  899999998764    45677899999999999999   8


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      ++|++++ .|+.|++||+..+.............+...+..+.|+     |++.+|++++.||.|++|++....
T Consensus       222 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          222 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence            8999887 7999999999987533111222223355567778887     999999999999999999987543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7e-31  Score=255.51  Aligned_cols=235  Identities=14%  Similarity=0.166  Sum_probs=188.5

Q ss_pred             CcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +.+|++|+.||.|++||+..+  +.+..+ .+|.++|++++|+|  ++++|++|+.|++|++||+.+++  .+..+.+|.
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~   99 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS   99 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence            788999999999999999754  444444 78999999999986  48899999999999999998874  566778899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecC-------------CCEEEEEecC
Q 008041          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN-------------GKYVLSSAVG  220 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~-------------~~~l~s~~~~  220 (579)
                      ..|.+++|+|+  |.+|++++  +.|++||++++.  ....+.+|...|.+++|+|+             +++|++++ .
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~  178 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  178 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-T
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-C
Confidence            99999999997  88999988  899999998763  24567899999999999997             46888887 7


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC---CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      |++|++||++.++.. ......+..+...+..+.|+     |+   +.+|++++.||+|++||+++....     .... 
T Consensus       179 D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~iWd~~~~~~~-----~~~~-  246 (297)
T 2pm7_B          179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCIIWTQDNEQGP-----WKKT-  246 (297)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSC-----CEEE-
T ss_pred             CCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEEEEeCCCCCc-----ccee-
Confidence            999999999876522 11334555666777888888     87   489999999999999997653210     0000 


Q ss_pred             eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                                     . .                            ....|...+.+++|+|||++| ++++.|+++++|
T Consensus       247 ---------------~-~----------------------------~~~~~~~~v~~~~~s~~g~~l-as~~~D~~v~lw  281 (297)
T 2pm7_B          247 ---------------L-L----------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  281 (297)
T ss_dssp             ---------------E-S----------------------------SSSCCSSCEEEEEECSSSCCE-EEEETTSCEEEE
T ss_pred             ---------------e-e----------------------------ecccCCCcEEEEEECCCCCEE-EEEcCCCcEEEE
Confidence                           0 0                            001356689999999999999 999999999999


Q ss_pred             ee
Q 008041          378 YV  379 (579)
Q Consensus       378 ~~  379 (579)
                      +.
T Consensus       282 ~~  283 (297)
T 2pm7_B          282 KE  283 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.4e-31  Score=265.28  Aligned_cols=243  Identities=11%  Similarity=0.189  Sum_probs=203.2

Q ss_pred             CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++|  .+++|+|+    |++|++|+.||.|+|||+.+++....+.+|...+..+.|++                  .+  
T Consensus        70 ~~v--~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------------------~~--  127 (366)
T 3k26_A           70 ENF--YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP------------------RD--  127 (366)
T ss_dssp             CCE--EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS------------------SC--
T ss_pred             CcE--EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC------------------CC--
Confidence            557  56699999    67999999999999999999999988887766555555544                  21  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                            +.++++|+.||.|++||+.+++.+..+.  .+|...|.+++|+|+++++++++.||.|++||+.+++....+..
T Consensus       128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence                  7889999999999999999998876652  57999999999999999999999999999999998765544443


Q ss_pred             ----------------------------CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--------------eE
Q 008041          158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--------------MQ  193 (579)
Q Consensus       158 ----------------------------~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~--------------~~  193 (579)
                                                  |...|.+++|+  ++++++++  +.|++||+.+++.              +.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                        88999999999  67899888  8999999987643              78


Q ss_pred             EeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC--ceeEEeEEecCCcccCCCcEEEE
Q 008041          194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       194 ~~~~h~~~v~~l~~s~~--~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~  269 (579)
                      .+.+|...|.+++|+|+  +++|++++ .|+.|++||+..++... .....+..+  ...+..+.|+     |++++|++
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s  352 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFS-----RDSSILIA  352 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence            88999999999999999  99999987 79999999999876442 122334444  5677888888     99999999


Q ss_pred             EEcCCeEEEEEcCC
Q 008041          270 ISETGVCYIWYGQN  283 (579)
Q Consensus       270 ~~~dg~i~iwd~~~  283 (579)
                      ++.||.|++||+.+
T Consensus       353 ~~~dg~i~iwd~~~  366 (366)
T 3k26_A          353 VCDDASIWRWDRLR  366 (366)
T ss_dssp             EETTSEEEEEEC--
T ss_pred             EeCCCEEEEEEecC
Confidence            99999999999753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=8.9e-31  Score=266.43  Aligned_cols=280  Identities=14%  Similarity=0.181  Sum_probs=216.9

Q ss_pred             EEEccCCCE-EEEEeCCCcEEEEECCCCeE----EEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041           11 TSFSPALDY-FAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fspdg~~-lasg~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++++|+... +++++.||.|+||++.....    ...+.+|..                  .+.++.|.+.+        
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~------------------~V~~~~~~p~~--------   93 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA------------------PVLDIAWCPHN--------   93 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS------------------CEEEEEECTTC--------
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC------------------CEEEEEeCCCC--------
Confidence            478887754 44578899999999865432    122333333                  45566666532        


Q ss_pred             CcEEEEEECCCeEEEEEccCC-------eEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEe--
Q 008041           86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF--  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~--  155 (579)
                      +.++++|+.||.|++||+.++       +.+..+ .+|...|++++|+|++ +++++++.|+.|++||+.+++.+..+  
T Consensus        94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            778999999999999999987       334344 6899999999999998 68999999999999999999999998  


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCC-EEEEEEecCCCEEEEEe--cCCCeEEEEEc
Q 008041          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT  229 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~-v~~l~~s~~~~~l~s~~--~~d~~i~vwd~  229 (579)
                      ..|...|.+++|+|+|++|++++  |.|++||+++++.+..+ .+|.+. +.++.|+|++++++++.  ..|+.|++||+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            78999999999999999999998  89999999999999998 788876 89999999999888872  26999999999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCcee-ecccCCeeEEeeeccCCcccc
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      +..+...  ......+.. .+..+.|+     |++.+|+++ +.||.|++||+.+++. +..                  
T Consensus       253 ~~~~~~~--~~~~~~~~~-~v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------  306 (402)
T 2aq5_A          253 KHLEEPL--SLQELDTSS-GVLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------  306 (402)
T ss_dssp             TBCSSCS--EEEECCCCS-SCEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred             ccccCCc--eEEeccCCC-ceeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence            8876421  223333333 35566777     999998754 5799999999876542 100                  


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                                        +... .|...+.+++|+|||.++ +++  ++.+++|++.+
T Consensus       307 ----------------------------------l~~~-~~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~  342 (402)
T 2aq5_A          307 ----------------------------------LSMF-SSKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE  342 (402)
T ss_dssp             ----------------------------------EEEE-CCSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred             ----------------------------------eccc-ccCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence                                              0011 145689999999999998 654  56899999853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=8e-30  Score=255.37  Aligned_cols=280  Identities=13%  Similarity=0.097  Sum_probs=216.6

Q ss_pred             CCCcccceEEEEccC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeccCccccccccccccccccccccccceEEeeec
Q 008041            2 GSSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~l~~~fspd---g~~lasg~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.++|  .+++|+|+   |++|++|+.||.|+|||+.+ +... ..+.+|...+.++.|+++                  
T Consensus        38 h~~~v--~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------   97 (368)
T 3mmy_A           38 PDDSI--GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD------------------   97 (368)
T ss_dssp             CSSCE--EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT------------------
T ss_pred             CCCce--EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC------------------
Confidence            45778  55699999   69999999999999999987 5554 666666655554444443                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                               +.+|++++.||.|++||+.+++.+..  .+|...|++++|  +|++++|++++.||.|++||+++++.+..
T Consensus        98 ---------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           98 ---------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             ---------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             ---------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence                     78899999999999999999987753  469999999999  89999999999999999999999999998


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCE----EEEEecCCCeEEE
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIAL  226 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~----l~s~~~~d~~i~v  226 (579)
                      +..+. .+.++.+.++  .+++++  +.+++|+++........  ..+...+.++.+.++...    +++++ .|+.|++
T Consensus       167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i  242 (368)
T 3mmy_A          167 LQLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI  242 (368)
T ss_dssp             EECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred             EecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence            88664 6677777654  444444  89999999876543322  234456677777766554    78877 7999999


Q ss_pred             EEcCCCccccceeeeeeecCce------------eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCee
Q 008041          227 WRTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK  294 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  294 (579)
                      |+++......  ....+..+..            .+..+.|+     |++++|++++.||.|++||+.+++.+.      
T Consensus       243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------  309 (368)
T 3mmy_A          243 HYINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------  309 (368)
T ss_dssp             EESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE------
T ss_pred             EecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE------
Confidence            9998874311  2233333332            47778887     999999999999999999987765432      


Q ss_pred             EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008041          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~  374 (579)
                                                                       .+.+|...+.+++|+|||.+| +++|.|+..
T Consensus       310 -------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~  339 (368)
T 3mmy_A          310 -------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWS  339 (368)
T ss_dssp             -------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCST
T ss_pred             -------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEeccccc
Confidence                                                             122567789999999999999 899888877


Q ss_pred             cceee
Q 008041          375 RGRYV  379 (579)
Q Consensus       375 ~~w~~  379 (579)
                      +.|++
T Consensus       340 ~~~~~  344 (368)
T 3mmy_A          340 KGHEF  344 (368)
T ss_dssp             TCGGG
T ss_pred             ccccc
Confidence            77765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=6.2e-30  Score=278.91  Aligned_cols=241  Identities=17%  Similarity=0.203  Sum_probs=199.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.+|  .+++|+|+|++|++|+.||+|+|||+.++.....+.+|...+.++.|+++                       
T Consensus       429 h~~~v--~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  483 (694)
T 3dm0_A          429 HSHFV--EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD-----------------------  483 (694)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred             CCCcE--EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC-----------------------
Confidence            35667  45599999999999999999999999999999999888777766666655                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                          +.++++|+.|+.|++||..........  ..+|...|.+++|+|++  ..+++++.|++|++||+.+++....+.+
T Consensus       484 ----~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~  559 (694)
T 3dm0_A          484 ----NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG  559 (694)
T ss_dssp             ----SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ----CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence                778999999999999998765443222  25789999999999987  5799999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |.+.|++++|+|+|++|++++  |.|++||+++++.+..+. +...|.+++|+|++.++++++  |+.|++||+.++...
T Consensus       560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV  636 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence            999999999999999999998  899999999999888776 456899999999998877654  678999999987533


Q ss_pred             cceeeeeee-----------------cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          236 SASCVLAME-----------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       236 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      .   .....                 .....+..+.|+     |+|++|++|+.||+|++|++.
T Consensus       637 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          637 E---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             E---EECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred             h---hhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence            1   01000                 011124566777     999999999999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=4.4e-30  Score=258.02  Aligned_cols=248  Identities=12%  Similarity=0.171  Sum_probs=200.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|  .+++|+|++++|++|+.||.|++||+.+++....+  ..+..                  .+.++.|.+.    
T Consensus        52 ~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~----  107 (372)
T 1k8k_C           52 NGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR------------------AARCVRWAPN----  107 (372)
T ss_dssp             SSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS------------------CEEEEEECTT----
T ss_pred             CCcc--cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC------------------ceeEEEECCC----
Confidence            4677  55599999999999999999999999988765544  33333                  3445555543    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-----------
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-----------  146 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~-----------  146 (579)
                           +.++++++.+|.|++||+..+.   ....+..+|...|.+++|+|+++++++++.|+.|++||+           
T Consensus       108 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          108 -----EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             -----SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             -----CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence                 7789999999999999999876   244555779999999999999999999999999999995           


Q ss_pred             -------CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041          147 -------LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       147 -------~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  217 (579)
                             ..++.+..+..|...|.+++|+|+++++++++  +.|++||+++++.+..+..|..+|.+++|+|++++++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence                   46788888989999999999999999999988  899999999999999999999999999999999877765


Q ss_pred             ecCCCeEEEEEcCC--Cccc---------------------------cceee------eee--ecCceeEEeE-EecCCc
Q 008041          218 AVGERYIALWRTDG--VKKQ---------------------------SASCV------LAM--EHPAVFMDCR-CIDNGG  259 (579)
Q Consensus       218 ~~~d~~i~vwd~~~--~~~~---------------------------~~~~~------~~~--~~~~~~~~~~-~~~~~~  259 (579)
                        .|+.|++|++..  ++..                           .....      ..+  .|.. .+.++ +++   
T Consensus       263 --~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~---  336 (372)
T 1k8k_C          263 --HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLS---  336 (372)
T ss_dssp             --TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEE---
T ss_pred             --eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEec---
Confidence              599999999987  3200                           00000      111  3444 44455 455   


Q ss_pred             ccCCC---cEEEEEEcCCeEEEEEcCCceee
Q 008041          260 VDDAG---LYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       260 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                        ++|   .+|++++.||.|++||+.+++.+
T Consensus       337 --~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          337 --GGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             --STTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             --CCCcceeeEEEecCCCceEEEEecChhHh
Confidence              777   99999999999999999887654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.7e-31  Score=287.87  Aligned_cols=252  Identities=16%  Similarity=0.197  Sum_probs=205.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+|||+.  ++.....+.+|...+.                  ++.|.+..  
T Consensus         8 H~~~V--~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~------------------~l~~s~~~--   65 (753)
T 3jro_A            8 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW------------------RVDWAHPK--   65 (753)
T ss_dssp             CCCCE--EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE------------------EEEECCTT--
T ss_pred             Cccee--EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE------------------EEEecCCC--
Confidence            46788  555999999999999999999999998  5566777776665554                  44444321  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~  153 (579)
                           ++.++++|+.||.|++||+.+++  .+..+ .+|..+|++++|+|+  ++.+++|+.||.|++||+.++.  ...
T Consensus        66 -----~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           66 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             -----SCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             -----CCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence                 16789999999999999999987  44333 679999999999999  9999999999999999998773  344


Q ss_pred             EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCC----eeeEEeecCCCCEEEEEEecC---C
Q 008041          154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---G  211 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~---~  211 (579)
                      .+.+|...|.+++|+|             +++++++|+  |.|++||++++    .....+.+|..+|.+++|+|+   +
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  219 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence            5778999999999999             588999887  89999999877    566788899999999999999   8


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      +++++++ .||.|++||+..+.............+...+..+.|+     |+|.+|++++.||.|++||+.++...
T Consensus       220 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~~  289 (753)
T 3jro_A          220 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGKW  289 (753)
T ss_dssp             EEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred             CEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCCc
Confidence            8999987 7999999999987532111222233345566777887     99999999999999999998865443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.8e-29  Score=248.76  Aligned_cols=246  Identities=16%  Similarity=0.190  Sum_probs=199.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|+|++|++|+.|+.|++|+...+........+........+.+.                        
T Consensus        86 ~~~V--~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  139 (340)
T 4aow_A           86 SHFV--SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD------------------------  139 (340)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred             CCCE--EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec------------------------
Confidence            4678  55599999999999999999999999998887766544433332222222                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         +..+++|+.|+.+++||............+|...|.+++|++++  .++++++.|+.|++||+.+++.+..+.+|.+
T Consensus       140 ---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~  216 (340)
T 4aow_A          140 ---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG  216 (340)
T ss_dssp             ---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             ---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence               67799999999999999988877666668899999999999865  4688999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc--
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS--  236 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~--  236 (579)
                      .|++++|+|++++|++|+  +.|++||+++.+.+..+.. ...|.++.|+|++.+++ ++ .|+.|++||++......  
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~-~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLC-AA-TGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEE-EE-ETTEEEEEETTTTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceee-cc-CCCEEEEEECCCCeEEEec
Confidence            999999999999999998  8999999999999988875 46899999999986654 45 59999999998765321  


Q ss_pred             --ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                        .........+...+.++.|+     |+|++|++|+.||.|++||+.+|+
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence              00111222345566778887     999999999999999999999885

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.8e-30  Score=262.02  Aligned_cols=250  Identities=14%  Similarity=0.114  Sum_probs=203.8

Q ss_pred             CCcccceEEEEccC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccCccccccccccccccccccccccce
Q 008041            3 SSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTC   70 (579)
Q Consensus         3 ~~~V~~l~~~fspd----g---~~lasg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (579)
                      .++|  .+++|+|+    |   ++|++|+.||.|++||+.+++.     ...+..+....             ....+.+
T Consensus        62 ~~~v--~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~  126 (397)
T 1sq9_A           62 KSGL--HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFWA  126 (397)
T ss_dssp             TTCE--EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEEE
T ss_pred             CCcE--EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEEE
Confidence            4677  55699999    9   9999999999999999988775     66665442000             0234566


Q ss_pred             EEeeecc-cccccccCCcE-EEEEECCCeEEEEEccC------CeEEE-----Eec------CCCCCCEEEEEEccCCCE
Q 008041           71 MKWLSVD-RKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFATHGSC  131 (579)
Q Consensus        71 ~~w~~~~-~~~~~~~~~~~-l~~~~~~g~i~iwd~~~------~~~~~-----~~~------~~h~~~V~~l~~~~~~~~  131 (579)
                      +.|.+.. +      ++.. +++++.+|.|++||+.+      ++.+.     .+.      ..|...|++++|+|++ +
T Consensus       127 ~~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          127 LKWGASNDR------LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  199 (397)
T ss_dssp             EEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             EEEeeccCC------CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence            6776211 1      1677 99999999999999998      55443     332      4588999999999999 9


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEeec---C---CCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeec---
Q 008041          132 IYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSG---  197 (579)
Q Consensus       132 l~s~~~d~~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~---  197 (579)
                      +++++.|+.|++||+++++.+..+..   |   ...|.+++|+|++++|++++     +.|++||+++++.+..+.+   
T Consensus       200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            99999999999999999999999998   8   89999999999999999987     4899999999999999998   


Q ss_pred             ----------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee------cC---------------
Q 008041          198 ----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------HP---------------  246 (579)
Q Consensus       198 ----------h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~---------------  246 (579)
                                |...|.+++|+|++++|++++ .|+.|++||+.+++..     ..+.      .+               
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee-----EEEecccCcccchhhhhcccccccccc
Confidence                      999999999999999999988 7999999999887633     3343      33               


Q ss_pred             ceeEEeEEecCCcccCCC----------cEEEEEEcCCeEEEEEcCCce
Q 008041          247 AVFMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      ...+..+.|+     |++          .+|++++.||.|++||+++++
T Consensus       354 ~~~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          354 EPGVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SCCEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CCceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            5667778887     888          799999999999999988763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.5e-30  Score=255.58  Aligned_cols=235  Identities=13%  Similarity=0.100  Sum_probs=188.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~  160 (579)
                      +.+|++|+.|+.|++||+.++.. ....+.+|.++|++++|+|  ++++|++|+.|++|++||++++  +....+.+|..
T Consensus        25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~  104 (316)
T 3bg1_A           25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS  104 (316)
T ss_dssp             GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence            78899999999999999998753 2233478999999999976  4889999999999999999887  45667888999


Q ss_pred             CeeEEEEccC--CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecC-----------------CCEEEE
Q 008041          161 GISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN-----------------GKYVLS  216 (579)
Q Consensus       161 ~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~-----------------~~~l~s  216 (579)
                      .|.+++|+|+  |.+|++|+  +.|++||++++..   ...+.+|...|.++.|+|+                 +++|++
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  184 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS  184 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred             ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence            9999999998  78999998  8999999987632   3456789999999999997                 367888


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC----cEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      ++ .|+.|++||++.....  .....+..+...+..+.|+     |++    .+|++++.||+|++|++.+...-     
T Consensus       185 gs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D~~v~iw~~~~~~~~-----  251 (316)
T 3bg1_A          185 GG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQDGRVFIWTCDDASSN-----  251 (316)
T ss_dssp             CB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETTCEEEEEECSSTTCC-----
T ss_pred             ec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCCCeEEEEEccCcccc-----
Confidence            77 7999999999754311  1334555666677888887     775    89999999999999997653110     


Q ss_pred             eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008041          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~  372 (579)
                                   ...                                 ...+..|...|.+++|+|||.+| ++++.|+
T Consensus       252 -------------~~~---------------------------------~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~  284 (316)
T 3bg1_A          252 -------------TWS---------------------------------PKLLHKFNDVVWHVSWSITANIL-AVSGGDN  284 (316)
T ss_dssp             -------------CCB---------------------------------CCEEEECSSCEEEEEECTTTCCE-EEEESSS
T ss_pred             -------------chh---------------------------------hhhhhcCCCcEEEEEEcCCCCEE-EEEcCCC
Confidence                         000                                 00123567789999999999999 9999999


Q ss_pred             cccceeee
Q 008041          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      ++++|+..
T Consensus       285 ~v~lw~~~  292 (316)
T 3bg1_A          285 KVTLWKES  292 (316)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEC
Confidence            99999873

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=2.1e-29  Score=261.30  Aligned_cols=243  Identities=15%  Similarity=0.213  Sum_probs=204.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|++ +|++|+.||+|++||+.+++....+.+|...+.                  ++.|.+..    
T Consensus       161 h~~~V--~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~l~~~~~~----  215 (464)
T 3v7d_B          161 HDGGV--WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR------------------CLDIVEYK----  215 (464)
T ss_dssp             CSSCE--EEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEEESS----
T ss_pred             CCcCE--EEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccE------------------EEEEecCC----
Confidence            45788  556999988 999999999999999999999998887665554                  44444321    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEE----------------------EEecCCCCCCEEEEEEccCCCEEEEEeCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADG  139 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~  139 (579)
                         ++.++++|+.||.|++||+.++...                      .....+|...|.++  +++++++++++.|+
T Consensus       216 ---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~  290 (464)
T 3v7d_B          216 ---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN  290 (464)
T ss_dssp             ---SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred             ---CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence               1678999999999999999887532                      23446799999887  56889999999999


Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  217 (579)
                      .|++||+.+++.+..+.+|...|.+++|+|+++++++|+  |.|++||+++++.+.++.+|...|.++.|+  +++++++
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            999999999999999999999999999999999999998  899999999999999999999999999997  5789988


Q ss_pred             ecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                      + .|+.|++||+.+....     .... +........++     +++.++++++ ||.|++||+.+++.+..
T Consensus       369 s-~dg~v~vwd~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          369 A-ADGSIRGWDANDYSRK-----FSYH-HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             E-TTSEEEEEETTTCCEE-----EEEE-CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             e-CCCcEEEEECCCCcee-----eeec-CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            7 7999999999986532     3332 33345556666     8999999988 89999999999988864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-30  Score=263.89  Aligned_cols=296  Identities=9%  Similarity=-0.018  Sum_probs=219.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccc---------------cc-cccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL---------------ER-EHLSVD   67 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~   67 (579)
                      .-|  .+++|||||+++|+++.|++|+  |...++.   +.+|...+..+.|+|+-               .. +| ...
T Consensus        16 ~~v--~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~   87 (588)
T 2j04_A           16 DWK--NNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCY   87 (588)
T ss_dssp             SSS--CCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCC
T ss_pred             ccE--EEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCc
Confidence            346  4559999999999999999999  7666543   47888888888777541               00 22 456


Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCCCcEE
Q 008041           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVC  142 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d~~v~  142 (579)
                      +.+++|.|.         +..|++++.+|.|++||..+  ++..+ . |..     .|.+++|+|||++|++|+.||+|+
T Consensus        88 V~~vawSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           88 PRVCKPSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             EEEEEECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             EEEEEECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            788888885         78899999999999999544  44443 4 554     599999999999999999999999


Q ss_pred             EEeCCCCce-------eeEe----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee---eEEe-ecCCCCEEEEE
Q 008041          143 EIDPLTGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMT  206 (579)
Q Consensus       143 iwd~~~~~~-------~~~~----~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~---~~~~-~~h~~~v~~l~  206 (579)
                      +||+.++..       +.++    .+|...|.+++|+||| +++++. +.|++||+.+++.   ..++ .+|...|.+++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            999998753       5666    5677899999999999 555555 8999999988773   3566 47889999999


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe--cCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      |+  |+.+++++  ++.|++||+.+++..    ....+|. ..+..+.+  +     |++..|+++++||+ ++|..+. 
T Consensus       234 Fs--g~~LASa~--~~tIkLWd~~~~~~~----~~~~gh~-~~V~~va~~~s-----~d~~~La~a~edG~-klw~~d~-  297 (588)
T 2j04_A          234 IV--DYKVVLTC--PGYVHKIDLKNYSIS----SLKTGSL-ENFHIIPLNHE-----KESTILLMSNKTSY-KVLLEDE-  297 (588)
T ss_dssp             EE--TTEEEEEC--SSEEEEEETTTTEEE----EEECSCC-SCCCEEEETTC-----SSCEEEEECSSCEE-EEEESSS-
T ss_pred             EE--CCEEEEEe--CCeEEEEECCCCeEE----EEEcCCC-ceEEEEEeeeC-----CCCCEEEEEcCCCC-EEEeecc-
Confidence            99  68888875  699999999987642    2343444 44455677  6     99999999999999 9999772 


Q ss_pred             eeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCccee
Q 008041          285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL  364 (579)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (579)
                                ..      +++++.    .+++.  ++.++.++.     .|..    +..+.+ ...|.+++|||||+.+
T Consensus       298 ----------~~------~spd~~----l~a~~--d~~v~lW~~-----~g~~----l~~~~~-~~~I~~va~SPdG~~l  345 (588)
T 2j04_A          298 ----------LH------VTADNI----IAPYL--EKKFKKWST-----IWNE----FNNYET-TLVIHGISLSPDGYSI  345 (588)
T ss_dssp             ----------EE------EECCCS----SHHHH--HHHHHHTTT-----TTTS----SSSSCC-EEEEEEEEECTTSSEE
T ss_pred             ----------EE------ECCCce----EEEEc--CCEEEEEEC-----CCCc----eeeecc-ceEEEEEEECCCCCEE
Confidence                      11      344543    33333  666665431     1111    212222 4468999999999999


Q ss_pred             eccccc
Q 008041          365 PMSQSL  370 (579)
Q Consensus       365 ~~s~s~  370 (579)
                       ++++.
T Consensus       346 -A~~~~  350 (588)
T 2j04_A          346 -AIVYD  350 (588)
T ss_dssp             -EEEEE
T ss_pred             -EEEEe
Confidence             76663

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-31  Score=271.54  Aligned_cols=296  Identities=12%  Similarity=0.103  Sum_probs=221.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCccccccccccc-cccccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGN-RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|+|+++.+++++      .|+ .+++.+..+ .+|...+.++.|++ +                           +.++
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~---------------------------~~~l   79 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE---------------------------TPYL   79 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS---------------------------SCEE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC---------------------------CCEE
Confidence            5889998888765      388 467888887 66666555555554 3                           7889


Q ss_pred             EEEECCCeEEEEEccC---CeEEE-EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEeec-----
Q 008041           90 VLGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA-----  157 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~---~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~-----  157 (579)
                      ++|+.||.|++||+.+   +.... ....+|..+|++++|+|++++|++++.||.|++||+.   +++....+..     
T Consensus        80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence            9999999999999987   43211 1112599999999999999999999999999999994   5555444332     


Q ss_pred             -------CCCCeeEEE--EccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          158 -------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       158 -------~~~~v~~l~--~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                             +...+.++.  ++|+++++++++  +.|++||+++++.+..+.+  |...|++++|+|++++|++++ .|+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i  238 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGII  238 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCE
T ss_pred             EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeE
Confidence                   344666666  567899999998  8999999999999999988  899999999999999999988 79999


Q ss_pred             EEEEcCCCccccceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCC
Q 008041          225 ALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (579)
                      ++||++.++..     ..+. .+...+..+.+.+ .++|++.+|++++.||.|++||+.+++.+.........+.... +
T Consensus       239 ~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~  311 (437)
T 3gre_A          239 DIWDIRFNVLI-----RSWSFGDHAPITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-F  311 (437)
T ss_dssp             EEEETTTTEEE-----EEEBCTTCEEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG-G
T ss_pred             EEEEcCCccEE-----EEEecCCCCceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce-e
Confidence            99999986532     3332 3334566665542 1237888999999999999999999887665543322222111 2


Q ss_pred             cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec--CCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      +++++    .+...                          .+.+  |...|.+++|+ ++.+| ++|+.|+.+++|++.+
T Consensus       312 ~~~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          312 LPIEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNE  359 (437)
T ss_dssp             SCBCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTC
T ss_pred             ccccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCC
Confidence            33322    11000                          1224  88899999999 88899 9999999999999853

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.4e-30  Score=253.24  Aligned_cols=285  Identities=13%  Similarity=0.053  Sum_probs=203.5

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCc
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGM  140 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~  140 (579)
                      .++++.|.+.         +.+|++|+.||.|++||+.++.    .... +.+|..+|++++|+|  ++++|++++.||.
T Consensus        13 ~v~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A           13 LVHDVVYDFY---------GRHVATCSSDQHIKVFKLDKDTSNWELSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CEEEEEECSS---------SSEEEEEETTSEEEEEEECSSSCCEEEEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ceeEEEEcCC---------CCEEEEeeCCCeEEEEECCCCCCcceecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4566666653         7789999999999999999763    3333 368999999999999  6999999999999


Q ss_pred             EEEEeCCCC---------ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEee-----------
Q 008041          141 VCEIDPLTG---------SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS-----------  196 (579)
Q Consensus       141 v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~~~~~~~-----------  196 (579)
                      |++||+.++         +.+..+..|...|.+++|+|+  ++++++++  |.|++||+++++.+..+.           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999999877         557788899999999999999  99999987  899999999886544332           


Q ss_pred             --cCCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC----cEE
Q 008041          197 --GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYV  267 (579)
Q Consensus       197 --~h~~~v~~l~~s~~---~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l  267 (579)
                        +|...+.++.|+|+   +.++++++ .|+.+.+|+...++..   ....+..+...+.++.|+     |++    .+|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~~~~~l  233 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGRWYQLI  233 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSCSSEEE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCCcceEE
Confidence              67889999999997   88998887 6999988877766532   345555666677888888     888    899


Q ss_pred             EEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec
Q 008041          268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV  347 (579)
Q Consensus       268 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  347 (579)
                      ++++.||.|++||+.++................. ......    ....+..++.    .......+..........+.+
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD-NSADVD----MDAQGRSDSN----TEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             EEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEEEEECT
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccC-CCcccc----cccccccccc----cceeeeecccccccEEEEEec
Confidence            9999999999999887644332221111111000 011111    1111111110    000111111222244556778


Q ss_pred             CCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       348 h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      |...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus       305 h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKAT  336 (351)
T ss_dssp             TSSCEEEEEECSSSCCE-EEEETTSCEEEEEEC
T ss_pred             ccccEEEEEEcCCCCEE-EEecCCCcEEEEecC
Confidence            99999999999999999 999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.1e-31  Score=272.85  Aligned_cols=254  Identities=8%  Similarity=0.082  Sum_probs=190.3

Q ss_pred             CCcccceEEEEccC------CCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEee
Q 008041            3 SSNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         3 ~~~V~~l~~~fspd------g~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      .++|  ..++|+|+      +.+||+|+.||+|+|||+.++....  .+. ...+.  ..     ..+| ...++++.|.
T Consensus       207 ~~~V--~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~p~--~~-----l~~h-~~~v~sv~~s  275 (524)
T 2j04_B          207 FGEV--WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEKPS--LT-----LSLA-DSLITTFDFL  275 (524)
T ss_dssp             CCSE--EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCSCS--EE-----ECCT-TTCEEEEEES
T ss_pred             CCcE--EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecCce--EE-----EEcC-CCCEEEEEec
Confidence            3567  44599997      5799999999999999998764210  000 00000  00     1123 2456788886


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEE--EEccCC-CEEEEEeCCCcEEEEeCCCCce
Q 008041           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~~~d~~v~iwd~~~~~~  151 (579)
                      +          +..|++|+.||.|++||+.++........+|...|+++  .|+|+| ++|++|+.|++|++||++++++
T Consensus       276 ~----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          276 S----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             S----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             C----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            4          34699999999999999998754334447899999999  578887 8899999999999999999888


Q ss_pred             eeEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          152 LGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       152 ~~~~~~~~~--~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      ..++.+|..  .|.+++|+|+++.+++++  ++|++||++++.++.++.+|.+.|++++|+|+|++|++++ .|++|++|
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lw  424 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIIT  424 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECC
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEE
Confidence            777777654  588999999999999887  7999999999998889999999999999999999999988 79999999


Q ss_pred             EcCCCcccc---------------------------------------ceeeeeeecCceeEEeEEecCCcccCCC---c
Q 008041          228 RTDGVKKQS---------------------------------------ASCVLAMEHPAVFMDCRCIDNGGVDDAG---L  265 (579)
Q Consensus       228 d~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  265 (579)
                      |+.......                                       ..+...+..+...+.++.|+     |++   .
T Consensus       425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs-----p~~~~~~  499 (524)
T 2j04_B          425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN-----ETSAGGK  499 (524)
T ss_dssp             BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC-----CSTTTTT
T ss_pred             echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC-----CCCCccH
Confidence            975431110                                       00011111223344556776     875   5


Q ss_pred             EEEEEEcCCeEEEEEcCC
Q 008041          266 YVLAISETGVCYIWYGQN  283 (579)
Q Consensus       266 ~l~~~~~dg~i~iwd~~~  283 (579)
                      .+++|+.||.|+||+++-
T Consensus       500 ~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          500 CYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEEECTTSEEEEEECSC
T ss_pred             HHHhhccCceEEEEEccc
Confidence            999999999999999753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=256.43  Aligned_cols=250  Identities=11%  Similarity=0.143  Sum_probs=198.5

Q ss_pred             CCcccceEEEEccC---CCEEEEEeCCCcEEEEECCCCe-EEEEeccCccccccccccccccccccccccceEEeee---
Q 008041            3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS---   75 (579)
Q Consensus         3 ~~~V~~l~~~fspd---g~~lasg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---   75 (579)
                      .++|  .+++|+|+   |++|++|+.||.|++||+.+++ ....+.+|...+..                  +.|.+   
T Consensus        65 ~~~v--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~~~~~~  124 (357)
T 3i2n_A           65 AKPI--KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINA------------------IDGIGGLG  124 (357)
T ss_dssp             SSCE--EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEE------------------EEEESGGG
T ss_pred             cCcE--EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEE------------------Eeeccccc
Confidence            4577  56699999   7999999999999999999887 77777766655544                  43332   


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCC----CCEEEEE----EccCCCEEEEEeCCCcEEEEeC
Q 008041           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~----~~V~~l~----~~~~~~~l~s~~~d~~v~iwd~  146 (579)
                      .+++      +.++++++.+|.|++||+.+++ .+..+ ..|.    ..|.++.    |+|+++++++++.|+.|++||+
T Consensus       125 ~s~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (357)
T 3i2n_A          125 IGEG------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL  197 (357)
T ss_dssp             CC-C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred             cCCC------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence            1111      7789999999999999999887 44343 3343    3899998    7889999999999999999999


Q ss_pred             CCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCCCeeeEEee-----cCCCCEEEEEEecCCC-EEE
Q 008041          147 LTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVL  215 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--~~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~-~l~  215 (579)
                      ++++.... ..|...|.+++|+|   +++++++++  |.|++||+++++.+..+.     +|...|.+++|+|+++ +++
T Consensus       198 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          198 RNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL  276 (357)
T ss_dssp             TTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             ccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence            98887544 56788999999999   899999988  899999999877665554     8999999999999998 677


Q ss_pred             EEecCCCeEEEEEcCCCcccc--------------ceeeeeeecCceeEEeEEecCCcccCCCcEEE-EEEcCCeEEEEE
Q 008041          216 SSAVGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWY  280 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd  280 (579)
                      +++ .|+.|++||++......              ...+..+..+...+..+.|+     |++++|+ +++.||.|++||
T Consensus       277 ~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          277 TAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred             EEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEE
Confidence            776 79999999998654321              12455566667778888888     9999998 799999999999


Q ss_pred             cCCcee
Q 008041          281 GQNIEE  286 (579)
Q Consensus       281 ~~~~~~  286 (579)
                      +.+.+.
T Consensus       351 ~~~~~~  356 (357)
T 3i2n_A          351 VTKLNK  356 (357)
T ss_dssp             ECC---
T ss_pred             CCCccc
Confidence            987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-29  Score=259.32  Aligned_cols=256  Identities=13%  Similarity=0.053  Sum_probs=196.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccc----------c------------
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGN----------R------------   58 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~----------~------------   58 (579)
                      .|++++  +|+|||++|++++ ++.|++||+.+|+   .+..+..+........+..          .            
T Consensus         5 ~p~~~v--~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQNL--LTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCCEE--EECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccEEEE--EecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            577444  9999999777665 7899999999998   6666654432100000000          0            


Q ss_pred             ----------cccc----ccccccceEEeeecccccccccCCcE-EEEEECCCeEEEEEcc--CCeEEEEec-CCCCCCE
Q 008041           59 ----------LERE----HLSVDYTCMKWLSVDRKKKRKLGSSL-LVLGTGGGDVLALAVS--AGQLKWRLS-DCHPGGV  120 (579)
Q Consensus        59 ----------~~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~-l~~~~~~g~i~iwd~~--~~~~~~~~~-~~h~~~V  120 (579)
                                ...+    .....+.++.|.+.         +.+ +++|+.||.|++||+.  +++.+..+. ..|...|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP  152 (450)
T ss_dssp             ------------------CCCCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence                      0000    01225778888775         555 4888899999999999  777765543 2577899


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCceee----EeecCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee
Q 008041          121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK  191 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~---g~~l~~~~--~~i~vwd~~~~~~  191 (579)
                      ++++|+|++++|++++.||.|++|++.+++...    .+.+|...|++++|+|+   +++|++++  +.|++||+++++.
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            999999999999999999999999998887554    78889999999999999   99999998  8999999999988


Q ss_pred             eEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-----------------------cCc
Q 008041          192 MQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HPA  247 (579)
Q Consensus       192 ~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~  247 (579)
                      +.. +.+|...|.+++|+ ++++|++++ .|+.|++||+.+++..   ..+...                       ...
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccce
Confidence            877 56899999999999 999999988 7999999999987643   111111                       112


Q ss_pred             eeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEc
Q 008041          248 VFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG  281 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~  281 (579)
                      ..+..+.+.     |++++|++++ .|+.|++|++
T Consensus       308 ~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKIIKS-----KNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence            345566776     8999999999 8999999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=250.79  Aligned_cols=234  Identities=14%  Similarity=0.079  Sum_probs=183.8

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ..+.+++.+|++|+.||+|++||+.+++.+..+.  ...+..+.+++                            .  ++
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~----------------------------~--~~   89 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP----------------------------A--II   89 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC----------------------------S--EE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC----------------------------c--eE
Confidence            3456788999999999999999999998887765  22222222222                            2  78


Q ss_pred             EEECCCeEEEEEcc---------CCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeec-C
Q 008041           91 LGTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-S  158 (579)
Q Consensus        91 ~~~~~g~i~iwd~~---------~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~  158 (579)
                      +++.|+.|++|+..         +++.+.....+|.++|.+++|+|  +++++++++.||+|++||+.+++....+.. +
T Consensus        90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  169 (343)
T 3lrv_A           90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS  169 (343)
T ss_dssp             EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred             EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence            88888888888655         56655555567889999999999  999999999999999999999998776644 4


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-EEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~-~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ...+.+++|+|+|.++++|+  |.|++||+++++.+ ..+.+ |.++|++++|+|++.+|++++  |+.|++||+++.+.
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVG  247 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCc
Confidence            55899999999999999988  99999999999887 78888 999999999999999999987  44999999998764


Q ss_pred             ccceeeeeeecCceeE--EeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCce
Q 008041          235 QSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE  285 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  285 (579)
                      ..  .+..+..+...+  .++.|+     |+|++|++++. |+.+++|++....
T Consensus       248 ~~--~~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          248 TL--AYPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CB--SSCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ce--eecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEcccc
Confidence            31  111111111222  357777     99999999998 9999999986654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=253.61  Aligned_cols=236  Identities=14%  Similarity=0.161  Sum_probs=194.6

Q ss_pred             CcEEEEEECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041           86 SSLLVLGTGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +.+|++|+.||.|++||+.  +++.+..+ .+|..+|++++|+|+  +++|++++.||.|++||+.+++  .+..+..|.
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  101 (379)
T 3jrp_A           23 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS  101 (379)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence            7889999999999999998  44444444 689999999999977  8999999999999999999887  777788899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008041          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG  220 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~-------------~~~~l~s~~~~  220 (579)
                      ..|.+++|+|+  ++++++++  +.|++||++++.  ....+.+|...|.+++|+|             ++.++++++ .
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  180 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  180 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-T
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-C
Confidence            99999999999  99999988  899999999873  3456778999999999999             689999987 7


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC---CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      |+.|++||++..... ......+..+...+.++.|+     |+   +.+|++++.||.|++||+.++....     ....
T Consensus       181 dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~  249 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPW-----KKTL  249 (379)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEEE
T ss_pred             CCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEEC-----CCCCCCCeEEEEeCCCEEEEEeCCCCCccc-----eeee
Confidence            999999999876533 22344555666677888888     88   8999999999999999987653110     0000


Q ss_pred             eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                      .                                             ....|...+.+++|+|||.+| ++++.|+.+++|
T Consensus       250 ~---------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw  283 (379)
T 3jrp_A          250 L---------------------------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  283 (379)
T ss_dssp             S---------------------------------------------SSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEE
T ss_pred             e---------------------------------------------ccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEE
Confidence            0                                             011366689999999999999 899899999999


Q ss_pred             eee
Q 008041          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      ++.
T Consensus       284 ~~~  286 (379)
T 3jrp_A          284 KEN  286 (379)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.1e-28  Score=252.56  Aligned_cols=242  Identities=16%  Similarity=0.263  Sum_probs=202.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+|||++||+|+.||+|+|||+.+++++..+.+|...+                  .++.|.         
T Consensus       148 ~~V--~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v------------------~~~s~~---------  198 (420)
T 4gga_A          148 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV------------------GSLSWN---------  198 (420)
T ss_dssp             CCE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------------EEEEEE---------
T ss_pred             CcE--EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce------------------EEEeeC---------
Confidence            457  556999999999999999999999999999999887665433                  344442         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST  159 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~  159 (579)
                        +.++++|+.++.+++||..........+.+|...+..+.|+|+++++++++.|+.+++||..+++    .+..+..|.
T Consensus       199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          199 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred             --CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence              56799999999999999988765545557899999999999999999999999999999998765    345677788


Q ss_pred             CCeeEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008041          160 KGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK  233 (579)
Q Consensus       160 ~~v~~l~~~p~g~-~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~~d~~i~vwd~~~~~  233 (579)
                      ..|.+++|+|++. ++++++    +.|++||+.+++++..+..| ..+.++.|+|+++.+++++ ..|+.|++||+.+++
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence            9999999999665 455442    79999999999999888755 5788999999999888764 368999999999876


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                           ++..+..|...+.+++|+     |+|.+|++|+.||+|++||+......
T Consensus       356 -----~v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          356 -----KVAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             -----EEEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             -----EEEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCcc
Confidence                 345666666778888888     99999999999999999998766544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.6e-29  Score=247.59  Aligned_cols=243  Identities=14%  Similarity=0.150  Sum_probs=204.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++|++++.||.|++||+.+++....+. +...+                  .++.|.+.     
T Consensus        73 h~~~v--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v------------------~~~~~~~~-----  126 (369)
T 3zwl_B           73 HTGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPV------------------KRVEFSPC-----  126 (369)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCE------------------EEEEECTT-----
T ss_pred             cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCe------------------EEEEEccC-----
Confidence            35677  556999999999999999999999999999888776 33333                  44555442     


Q ss_pred             cccCCcEEEEEECC-----CeEEEEEccCCeE-----------EEEecCCCCC--CEEEEEEccCCCEEEEEeCCCcEEE
Q 008041           82 RKLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCE  143 (579)
Q Consensus        82 ~~~~~~~l~~~~~~-----g~i~iwd~~~~~~-----------~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~d~~v~i  143 (579)
                          +..+++++.+     |.|++||+..+..           ...+ ..|..  .+.+++|+|+++++++++.||.|++
T Consensus       127 ----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          127 ----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             ----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             ----CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence                7789999998     9999999987532           1111 34555  8999999999999999999999999


Q ss_pred             EeCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041          144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      ||+.+ ++.+..+..|...|.+++|+|++++|++++  +.|++||+++++.+..+. +...+..+.|+|+++++++++ .
T Consensus       202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~  279 (369)
T 3zwl_B          202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-G  279 (369)
T ss_dssp             EETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-C
T ss_pred             EECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-c
Confidence            99998 788888999999999999999999999987  899999999999988887 788999999999999999988 5


Q ss_pred             CC--------------eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          221 ER--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       221 d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      ++              .+++||..+++..     ..+..+...+..+.|+     |++++|++++.||.|++|+++++..
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          280 QEAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             CC-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             CCCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccc
Confidence            66              8999999887633     4555566677888888     9999999999999999999987654


Q ss_pred             e
Q 008041          287 L  287 (579)
Q Consensus       287 ~  287 (579)
                      .
T Consensus       350 ~  350 (369)
T 3zwl_B          350 D  350 (369)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.5e-30  Score=259.48  Aligned_cols=197  Identities=10%  Similarity=0.128  Sum_probs=154.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +.++|  .+++|+|+|++|++|+.||+|+|||+.++.   ....+.+|...+.++.|+++                    
T Consensus        54 h~~~v--~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------  111 (377)
T 3dwl_C           54 HDKIV--TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--------------------  111 (377)
T ss_dssp             CSSCE--EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT--------------------
T ss_pred             CCceE--EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC--------------------
Confidence            35678  556999999999999999999999999877   55555555555544444443                    


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--------
Q 008041           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------  147 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~--------  147 (579)
                             +.++++++.+|.|++||+.+++.   ...+...|...|++++|+|++++|++++.|+.|++||+.        
T Consensus       112 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          112 -------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             -------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             -------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence                   67899999999999999998873   445543499999999999999999999999999999985        


Q ss_pred             ----------CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCC
Q 008041          148 ----------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNG  211 (579)
Q Consensus       148 ----------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~  211 (579)
                                .++++..+ +|...|.+++|+|+|++|++++  |.|++||+++++.    +..+.+|..+|.+++|+|++
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES  263 (377)
T ss_dssp             CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred             cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence                      34566667 8999999999999999999988  8999999999887    78889999999999999999


Q ss_pred             CEEEEEecCCCeEEEEEcC
Q 008041          212 KYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~~  230 (579)
                      ++|++++ .|+ +.+|+..
T Consensus       264 ~~l~~~~-~~~-~~~~~~~  280 (377)
T 3dwl_C          264 AIVAAGY-NYS-PILLQGN  280 (377)
T ss_dssp             EEEEEES-SSS-EEEECCC
T ss_pred             CEEEEEc-CCc-EEEEEeC
Confidence            9888775 455 5577765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=4e-29  Score=256.42  Aligned_cols=248  Identities=13%  Similarity=0.197  Sum_probs=197.2

Q ss_pred             CCcccceEEEEccC-CCEEEEEeCCCcEEEEECCC----------CeEEEEeccCccccccccccccccccccccccceE
Q 008041            3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++|+  +++|+|+ +.+||+|+.||.|+|||+.+          ......+.+|..                  .+.++
T Consensus       128 ~~~v~--~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l  187 (430)
T 2xyi_A          128 EGEVN--RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------------EGYGL  187 (430)
T ss_dssp             SSCCS--EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS------------------CCCCE
T ss_pred             CCcEE--EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC------------------CeEEE
Confidence            46784  4599997 68999999999999999976          344455544443                  34566


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCCeE----E--EEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 008041           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----K--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEI  144 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~----~--~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iw  144 (579)
                      .|.+..        ..+|++|+.+|.|++||+.++..    +  .....+|...|.+++|+| ++..|++++.||.|++|
T Consensus       188 ~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          188 SWNPNL--------NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             EECTTS--------TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             EeCCCC--------CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence            665542        33899999999999999987322    1  123357999999999999 67889999999999999


Q ss_pred             eCCCC---ceeeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCC-EEEE
Q 008041          145 DPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YVLS  216 (579)
Q Consensus       145 d~~~~---~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~-~l~s  216 (579)
                      |++++   +.+..+..|...|++++|+|+++ ++++|+  |.|++||+++ ++.+..+.+|...|.++.|+|+++ +|++
T Consensus       260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            99987   57778889999999999999997 577776  8999999998 567889999999999999999996 5666


Q ss_pred             EecCCCeEEEEEcCCCcccc---------ceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCc
Q 008041          217 SAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  284 (579)
                      ++ .|+.|++||+.......         ...+.....+...+..+.|+     |++. +|++++.||.|++|++...
T Consensus       340 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          340 SG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred             Ee-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence            66 79999999998732110         12445555556667788887     8988 8999999999999998654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=4.5e-29  Score=252.05  Aligned_cols=238  Identities=15%  Similarity=0.183  Sum_probs=187.5

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| ++++|++|+.||.|++||+.+ .....+..+.              + ....+.++.|.+.    
T Consensus       117 h~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--------------~-~~~~v~~~~~~~~----  174 (383)
T 3ei3_B          117 PGDAI--TGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--------------S-WDYWYCCVDVSVS----  174 (383)
T ss_dssp             TTCBE--EEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--------------C-SSCCEEEEEEETT----
T ss_pred             cCCce--eEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--------------C-CCCCeEEEEECCC----
Confidence            34677  5569999 789999999999999999985 4444444222              0 1234566677653    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC----CceeeEe
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKF  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~----~~~~~~~  155 (579)
                           +.++++|+.+|.|++||+ +++.+..+ .+|...|.+++|+|+++ ++++++.|+.|++||+++    +..+..+
T Consensus       175 -----~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  247 (383)
T 3ei3_B          175 -----RQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM  247 (383)
T ss_dssp             -----TTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred             -----CCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence                 778999999999999999 45555455 57999999999999999 899999999999999987    5666666


Q ss_pred             ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----------------CCEEEEEEecCCCEEE
Q 008041          156 RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVL  215 (579)
Q Consensus       156 ~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~l~~s~~~~~l~  215 (579)
                       +|...|.+++|+| ++++|++++  +.|++||+++++.+..+.+|.                 ..+..+.|+|++++  
T Consensus       248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--  324 (383)
T 3ei3_B          248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--  324 (383)
T ss_dssp             -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred             -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence             6899999999999 999999988  899999999988877776553                 23444666666665  


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      +++ .|+.|++||+.+++..     ..+.  ++...+.++.|+     |++.+|++++ ||.|++||+++
T Consensus       325 s~s-~d~~i~iwd~~~~~~~-----~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 LLN-DKRTIDIYDANSGGLV-----HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CTT-CCCCEEEEETTTCCEE-----EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccC-CCCeEEEEecCCCcee-----eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence            444 7999999999987643     3333  245667777887     9999999997 99999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.6e-28  Score=242.54  Aligned_cols=292  Identities=10%  Similarity=-0.009  Sum_probs=206.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|||||++||+|+.|| ++|||+.+++.......+                    ...++.|.+..    
T Consensus        18 h~~~V--~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----   70 (355)
T 3vu4_A           18 VSNPV--TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT----   70 (355)
T ss_dssp             -CCCC--CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS----
T ss_pred             CCCce--EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC----
Confidence            34678  5559999999999998775 789999888766543211                    12233343321    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~  160 (579)
                          +.++++++.++.|++||..+++.+..+.  |..+|.++.|+++.  ++++ .|+.|++||+.++ +.+..+..   
T Consensus        71 ----~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---  138 (355)
T 3vu4_A           71 ----NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---  138 (355)
T ss_dssp             ----SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---
T ss_pred             ----CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---
Confidence                3344667788999999999999887663  67799999998764  4444 4889999999988 77777665   


Q ss_pred             CeeEEEEccCCCEEEEE--C--CeEEEEECCCCe----------------eeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041          161 GISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~--~--~~i~vwd~~~~~----------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      +...++++|  .+++++  +  |.|++||+++++                .+..+.+|.++|.+++|+|+|++|++++ .
T Consensus       139 ~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~  215 (355)
T 3vu4_A          139 FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-Q  215 (355)
T ss_dssp             EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-C
Confidence            445566777  566664  3  899999999875                2678899999999999999999999998 7


Q ss_pred             CCe-EEEEEcCCCccccceeeeeee-c-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc--cCCeeE
Q 008041          221 ERY-IALWRTDGVKKQSASCVLAME-H-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKI  295 (579)
Q Consensus       221 d~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~  295 (579)
                      |++ |++||+++++..     ..+. . +...+.++.|+     |++++|++++.||+|++||+........  ....  
T Consensus       216 d~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~--  283 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW--  283 (355)
T ss_dssp             TCSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--
T ss_pred             CCCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCcccccccce--
Confidence            998 999999987633     4454 2 55677788888     9999999999999999999876532111  0000  


Q ss_pred             EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                                        +....++. ..  .           ...+.-...+......++|++||.++ ++++.|+.++
T Consensus       284 ------------------~~~~~~~~-~~--~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~  330 (355)
T 3vu4_A          284 ------------------INMKYFQS-EW--S-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIE  330 (355)
T ss_dssp             ------------------EECCCCCC-SS--C-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEE
T ss_pred             ------------------eecccccc-cc--c-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEE
Confidence                              00000000 00  0           00000000122234678999999999 8888899999


Q ss_pred             ceeee
Q 008041          376 GRYVQ  380 (579)
Q Consensus       376 ~w~~~  380 (579)
                      +|++.
T Consensus       331 ~~~~~  335 (355)
T 3vu4_A          331 TFKVV  335 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-28  Score=237.24  Aligned_cols=236  Identities=13%  Similarity=0.208  Sum_probs=193.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .+++|+|++++|++|+.||.|++|++...   +....+.+|..                  .+.++.|.     
T Consensus        59 ~~~v--~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------------~i~~~~~~-----  113 (313)
T 3odt_A           59 QGFL--NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------------NVCSLSFQ-----  113 (313)
T ss_dssp             SSCE--EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------------CEEEEEEE-----
T ss_pred             CccE--EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------------CEEEEEec-----
Confidence            4667  55599999999999999999999998754   34444443333                  34455551     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-  157 (579)
                            +..+++++.+|.|++||  .++....+ ..|..+|.++.|+| +++++++++.|+.|++||  .++....+.. 
T Consensus       114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~  182 (313)
T 3odt_A          114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI  182 (313)
T ss_dssp             ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred             ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence                  66899999999999999  55555444 57999999999998 999999999999999999  5667777777 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |...+.+++|+|++. +++++  |.|++||+++++.+..+.+|...|.+++|+|++ .+++++ .|+.|++||+.+++..
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK  259 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence            888999999999999 55555  899999999999999999999999999999999 577777 7999999999987633


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                           ..+..+...+..+.|+     |+++ +++++.||.|++||+++++...
T Consensus       260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceee
Confidence                 4455566667788887     8888 6679999999999998876654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=7.5e-29  Score=252.18  Aligned_cols=247  Identities=14%  Similarity=0.207  Sum_probs=198.6

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCccccccccccccccccccccccceEEe
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      +.++|  .+++|+| ++++||+|+.||+|+|||+.++       +....+.+|...+                  .++.|
T Consensus        80 h~~~V--~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~  139 (402)
T 2aq5_A           80 HTAPV--LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV------------------GIVAW  139 (402)
T ss_dssp             CSSCE--EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE------------------EEEEE
T ss_pred             CCCCE--EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE------------------EEEEE
Confidence            35678  5569999 9999999999999999999987       4455555555444                  45555


Q ss_pred             eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  152 (579)
                      .+..        ..++++++.||.|++||+.+++.+..+. .+|...|++++|+|++++|++++.|+.|++||+++++.+
T Consensus       140 ~p~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          140 HPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             CSSB--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             CcCC--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            5432        3689999999999999999999887764 679999999999999999999999999999999999999


Q ss_pred             eEe-ecCCCC-eeEEEEccCCCEEEEE---C--CeEEEEECCCCee-eEEee-cCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041          153 GKF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       153 ~~~-~~~~~~-v~~l~~~p~g~~l~~~---~--~~i~vwd~~~~~~-~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~  223 (579)
                      ..+ ..|.+. +.++.|+|+++++++|   +  +.|++||+++++. +.... .|...+.++.|+|+++++++++..|+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            988 678775 8999999999999998   4  8999999998764 33332 577889999999999999876657999


Q ss_pred             EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      |++|++.+++.. ...+.... +...+..+.|+     |++.++++  .++.+++|++.+++
T Consensus       292 i~i~d~~~~~~~-~~~l~~~~-~~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          292 IRYFEITSEAPF-LHYLSMFS-SKESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEEEECSSTTC-EEEEEEEC-CSSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EEEEEecCCCcc-eEeecccc-cCCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence            999999987631 01222222 34556677787     89888764  57799999988754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=4.6e-28  Score=249.86  Aligned_cols=262  Identities=16%  Similarity=0.252  Sum_probs=211.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+  ++++++|+.||+|++||+.+++....+.+|...+.                  ++.|.       
T Consensus       158 h~~~v--~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~-------  208 (445)
T 2ovr_B          158 HTGGV--WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR------------------CMHLH-------  208 (445)
T ss_dssp             CSSCE--EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE-------
T ss_pred             CCCCE--EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE------------------EEEec-------
Confidence            34677  555886  67999999999999999999999988876655443                  44442       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++|+.||.|++||+.+++.+..+ .+|...|.++.|  +++++++++.||.|++||+.+++.+..+.+|...
T Consensus       209 ----~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  281 (445)
T 2ovr_B          209 ----EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR  281 (445)
T ss_dssp             ----TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence                556999999999999999999988666 679999999999  7889999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      |.+++|  +++++++++  |.|++||+++++.+..+.+|...+.++.++  ++++++++ .|+.|++||+++++..    
T Consensus       282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~----  352 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL----  352 (445)
T ss_dssp             EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred             eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE----
Confidence            999999  788899887  899999999999999999999999988875  56888887 7999999999887633    


Q ss_pred             eeeeec---CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc-----CCeeEEeeeccCCcccccccc
Q 008041          240 VLAMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-----KATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  311 (579)
                       ..+..   +...+.++.+       ++.+|++++.||.|++||+.+++.+...     .+....+.+.. +++++.   
T Consensus       353 -~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~---  420 (445)
T 2ovr_B          353 -QTLQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL---  420 (445)
T ss_dssp             -EEECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE---
T ss_pred             -EEEccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEE---
Confidence             33332   4445556665       4589999999999999999999877654     12222222222 455555   


Q ss_pred             hhhhhccccc
Q 008041          312 AAIFAAKLQD  321 (579)
Q Consensus       312 ~~i~~~~~~~  321 (579)
                       .+++++.|+
T Consensus       421 -~la~~~~dg  429 (445)
T 2ovr_B          421 -VCAVGSRNG  429 (445)
T ss_dssp             -EEEEECSSS
T ss_pred             -EEEEcccCC
Confidence             667777665

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=4.1e-29  Score=256.80  Aligned_cols=247  Identities=15%  Similarity=0.158  Sum_probs=183.7

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| ++++|++|+.||+|+|||++++........+..                ...+.++.|.+.    
T Consensus       163 H~~~V--~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~----  220 (435)
T 4e54_B          163 AGGSI--TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI----------------NIWFCSLDVSAS----  220 (435)
T ss_dssp             SSCCC--CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC----------------SCCCCCEEEETT----
T ss_pred             CCCCE--EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC----------------CccEEEEEECCC----
Confidence            45788  4559998 789999999999999999987655433322111                123345555543    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeE---ee
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGK---FR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~---~~  156 (579)
                           +.+|++|+.+|.|++||+.... +.. +.+|...|++++|+|+++ ++++|+.|+.|++||+++++....   ..
T Consensus       221 -----~~~l~~g~~dg~i~~wd~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~  293 (435)
T 4e54_B          221 -----SRMVVTGDNVGNVILLNMDGKE-LWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL  293 (435)
T ss_dssp             -----TTEEEEECSSSBEEEEESSSCB-CCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred             -----CCEEEEEeCCCcEeeeccCcce-eEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence                 7889999999999999987544 333 468999999999999886 688999999999999988765443   35


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCC------CEEEEEEecCCCEEEEEec---------
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG------AVRFMTFSDNGKYVLSSAV---------  219 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~------~v~~l~~s~~~~~l~s~~~---------  219 (579)
                      +|...|++++|+|+|++|++++  |.|++||+.+++....+..|..      .+....|+|++..+++++.         
T Consensus       294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  373 (435)
T 4e54_B          294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT  373 (435)
T ss_dssp             BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred             eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence            6889999999999999999998  8999999999988877766653      2334567777776666543         


Q ss_pred             --CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          220 --GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       220 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                        .++.|++||..+++..   ......|...+..+..|+     |+|.+|++|+ |++|+|||+++++.
T Consensus       374 ~~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          374 PYELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             TTCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred             ecCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence              3467999999888643   222223444444555687     9999998876 88999999988864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=3.4e-27  Score=231.43  Aligned_cols=239  Identities=15%  Similarity=0.242  Sum_probs=196.5

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|...+..                  ..+.         
T Consensus        68 ~~V--~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~------------------~~~~---------  118 (318)
T 4ggc_A           68 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS------------------LSWN---------  118 (318)
T ss_dssp             CCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------------------EEEE---------
T ss_pred             CeE--EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE------------------eecC---------
Confidence            457  56699999999999999999999999999999988766543321                  1111         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCC
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAST  159 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~  159 (579)
                        +..+++++.++.+++|+...+........+|...+..+.|+++++++++++.|+.|++||+.+++.    ......+.
T Consensus       119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  196 (318)
T 4ggc_A          119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  196 (318)
T ss_dssp             --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred             --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence              667999999999999999987665555578999999999999999999999999999999987753    34455677


Q ss_pred             CCeeEEEEccCCCEEE---EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008041          160 KGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK  233 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~---~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~~d~~i~vwd~~~~~  233 (579)
                      +.|.++.++|++..++   +++  +.|++||.+........ .+...+..+.|+|+++.+++++ ..|+.|++||+++++
T Consensus       197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~  275 (318)
T 4ggc_A          197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  275 (318)
T ss_dssp             SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence            8999999999776443   333  79999999988776654 4778899999999999887754 368999999999876


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .     +..+..|...+.++.|+     |+|++|++++.||+|++||+.+.
T Consensus       276 ~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          276 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCC
T ss_pred             E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCC
Confidence            3     45666667778888888     99999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=6.1e-28  Score=247.63  Aligned_cols=255  Identities=13%  Similarity=0.135  Sum_probs=198.8

Q ss_pred             ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC----------CeEEEEecCCCCCCEEEEEEccCCC-EEE
Q 008041           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIY  133 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----------~~~~~~~~~~h~~~V~~l~~~~~~~-~l~  133 (579)
                      ...++++.|.+.+        +.++++++.+|.|++||+.+          ......+ .+|...|++++|+|++. +|+
T Consensus       128 ~~~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          128 EGEVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             SSCCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEE
T ss_pred             CCcEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEE
Confidence            3467778887743        56899999999999999987          3444444 57999999999999998 999


Q ss_pred             EEeCCCcEEEEeCCCCce-------eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC---eeeEEeecCCC
Q 008041          134 SAGADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPG  200 (579)
Q Consensus       134 s~~~d~~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~---~~~~~~~~h~~  200 (579)
                      +|+.||.|++||+..+..       ...+.+|...|.+++|+| ++.+|++++  |.|++||++++   +.+..+..|..
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            999999999999987432       456778999999999999 677888886  89999999987   57778889999


Q ss_pred             CEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEE
Q 008041          201 AVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYI  278 (579)
Q Consensus       201 ~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i  278 (579)
                      .|++++|+|+++ .+++++ .|+.|++||++....    .+..+..+...+..+.|+     |++. +|++++.||.|++
T Consensus       279 ~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHV  348 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTS----CSEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEE
T ss_pred             CeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEE
Confidence            999999999998 566666 799999999998542    234455556667778887     8884 7999999999999


Q ss_pred             EEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041          279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ||+.........               .      .    ..++                .........+|...|.+++|+
T Consensus       349 wd~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~  387 (430)
T 2xyi_A          349 WDLSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWN  387 (430)
T ss_dssp             EEGGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEEC
T ss_pred             EeCCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEEC
Confidence            998663221100               0      0    0000                011222445788899999999


Q ss_pred             CCcc-eeeccccceecccceeee
Q 008041          359 QDGV-LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       359 ~dg~-~l~~s~s~d~~~~~w~~~  380 (579)
                      |++. ++ ++++.|+.+++|++.
T Consensus       388 p~~~~~l-~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          388 PNEPWII-CSVSEDNIMQVWQMA  409 (430)
T ss_dssp             SSSTTEE-EEEETTSEEEEEEEC
T ss_pred             CCCCCEE-EEEECCCCEEEeEcc
Confidence            9999 56 999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=3.6e-28  Score=243.41  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=161.2

Q ss_pred             EEEEccCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg~~lasg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +++|||||+++|+++  .|++|+|||+.+++++..+. |...+.++.|+++                           +.
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------g~  189 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------GK  189 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------SS
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------Cc
Confidence            459999999987554  68999999999999988875 4445555555554                           77


Q ss_pred             EEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEeCCCCce----eeEeecC
Q 008041           88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS  158 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~----~v~iwd~~~~~~----~~~~~~~  158 (579)
                      ++++++ ++.+.+|+..+++.+ .....+|...|.+++|+|+++++++++.|+    .++.||+..+..    ...+.+|
T Consensus       190 ~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~  268 (365)
T 4h5i_A          190 VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR  268 (365)
T ss_dssp             EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred             eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence            788877 455677777776654 345567899999999999999999999887    688899876643    3457788


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ...|++++|+|||++||+|+  ++|+|||+++++++.++ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus       269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~  344 (365)
T 4h5i_A          269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN  344 (365)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred             CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence            89999999999999999998  89999999999999886 78999999999999999999998 7999999999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1e-27  Score=242.70  Aligned_cols=232  Identities=12%  Similarity=0.025  Sum_probs=171.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEE----EecCCCCCCEEEEEEcc--------CCCEEEEEeCCCcEEEEeCCCCceee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~----~~~~~h~~~V~~l~~~~--------~~~~l~s~~~d~~v~iwd~~~~~~~~  153 (579)
                      +.++++++.|++|++||..+++...    ..+.+|.+.|++++|+|        |+++|++|+.|++|++||+.++.++.
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            5689999999999999999987543    23578999999999998        88999999999999999999988888


Q ss_pred             EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE-------------------------eecCCCCEEEE
Q 008041          154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM  205 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~-------------------------~~~h~~~v~~l  205 (579)
                      .+..|...+.+++|+|++. +|++++  ++|++||+++++....                         ..+|...+.++
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v  260 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV  260 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred             eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence            8888999999999999875 688877  8999999988754322                         24677888999


Q ss_pred             EEe-cCCCEEEEEecCCCeEEEEEcCCCccccce--------------eeeeeecCceeEEeEEecCCcccCCCcEEEEE
Q 008041          206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       206 ~~s-~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  270 (579)
                      .|+ |+++.+++++ .|+++++||+...+.....              ...........+...++.    .+++.++++|
T Consensus       261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg  335 (393)
T 4gq1_A          261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH  335 (393)
T ss_dssp             EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred             eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence            987 7999999987 7999999999876432100              011111222223333333    1355677788


Q ss_pred             EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008041          271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG  350 (579)
Q Consensus       271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~  350 (579)
                      +.||+|++||..+++...                                                       ....|..
T Consensus       336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~  360 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM  360 (393)
T ss_dssp             TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred             CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence            889999999987654321                                                       2235667


Q ss_pred             CcEEEeecCCcceeeccccceecccceee
Q 008041          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      .|.+++|||||++| +++++++. .+|.+
T Consensus       361 ~V~svafspdG~~L-A~as~~Gv-~lvrL  387 (393)
T 4gq1_A          361 PIVDFCWHQDGSHL-AIATEGSV-LLTRL  387 (393)
T ss_dssp             CEEEEEECTTSSEE-EEEESSEE-EEEEE
T ss_pred             cEEEEEEcCCCCEE-EEEeCCCe-EEEEE
Confidence            89999999999999 99987765 45544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.5e-27  Score=242.19  Aligned_cols=280  Identities=15%  Similarity=0.089  Sum_probs=213.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|+|++.++++++.|+.|++||..+++....+....            ..+| ...+.++.|.+.         +.+
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~  183 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NEL  183 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEE
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEE
Confidence            355999988888888889999999999998876432100            0112 123445566332         678


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      +++++.++.|++||+.+++.+..+ ..|...+.+++|+|+++.+++++ .|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus       184 ~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  261 (433)
T 3bws_A          184 WVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL  261 (433)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred             EEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence            899999999999999999887666 46889999999999999885554 7999999999999988887754 46899999


Q ss_pred             ccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          168 SSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       168 ~p~g~~l~~~~----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      +|+|+.+++++          +.|++||+++++.+..+ .|...+.+++|+|+++++++++..|+.|++||+.+++..  
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--  338 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--  338 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--
Confidence            99999888765          48999999999887665 466688999999999877666558999999999976533  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---------------CCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                         ..+.+. ..+..+.|+     |+|+++++++.               ||.|++||..+++.+..             
T Consensus       339 ---~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~-------------  396 (433)
T 3bws_A          339 ---KSIPVF-DKPNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF-------------  396 (433)
T ss_dssp             ---EEEECS-SSEEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE-------------
T ss_pred             ---EEecCC-CCCCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE-------------
Confidence               333333 334567777     99999988876               46888888776544321             


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                                +.. ...+..++|+|||++|.++++.|+++++|++.
T Consensus       397 ------------------------------------------~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          397 ------------------------------------------WEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ------------------------------------------EEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ------------------------------------------ecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                                                      111 22578899999999993444569999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.4e-27  Score=245.47  Aligned_cols=239  Identities=14%  Similarity=0.262  Sum_probs=191.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|  ++++|++|+.||.|++||+.+++....+.+|...+.+                  +.|.       
T Consensus       172 h~~~v--~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~------------------l~~~-------  222 (435)
T 1p22_A          172 HTGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH------------------LRFN-------  222 (435)
T ss_dssp             CSSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE------------------EECC-------
T ss_pred             CCCcE--EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE------------------EEEc-------
Confidence            34667  54466  8899999999999999999999999988766654443                  3332       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                          +..+++|+.||.|++||+.++....  ....+|...|.++.|  +++++++|+.||.|++||+.+++.+..+.+|.
T Consensus       223 ----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  296 (435)
T 1p22_A          223 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK  296 (435)
T ss_dssp             ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC
Confidence                4579999999999999999876542  445789999999999  78899999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-  236 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~-  236 (579)
                      ..|.++.++  ++++++|+  |.|++||+++++.+.++.+|...|.++.|  ++.++++++ .||.|++||+..+.... 
T Consensus       297 ~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~  371 (435)
T 1p22_A          297 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRA  371 (435)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred             CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCccc
Confidence            999999995  67888887  89999999999999999999999999999  688999988 79999999987654211 


Q ss_pred             ---ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                         ..++..+..+...+..+.|       ++.+|++++.||.|++||+.+....
T Consensus       372 ~~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          372 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC-------
T ss_pred             cccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCc
Confidence               1134445555555555655       5678999999999999999876554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=262.87  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=195.2

Q ss_pred             CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041           86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +.++++|+.||.|++||+..  ++....+ .+|.++|++++|+|+  ++++++|+.||.|++||+.+++  .+..+.+|.
T Consensus        21 g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~   99 (753)
T 3jro_A           21 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS   99 (753)
T ss_dssp             SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence            77899999999999999984  4444444 789999999999988  9999999999999999999887  677788899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008041          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG  220 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~-------------~~~~l~s~~~~  220 (579)
                      ..|++++|+|+  ++.+++|+  |.|++||++++  .....+.+|...|.++.|+|             ++.++++++ .
T Consensus       100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~  178 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  178 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-T
T ss_pred             CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-C
Confidence            99999999999  99999998  89999999887  34556788999999999999             588899987 7


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC---CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      ||.|++||++++... ......+..+...+.++.|+     |+   +.+|++++.||.|++||+.+++.....       
T Consensus       179 dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~s-----p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-------  245 (753)
T 3jro_A          179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK-------  245 (753)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEESSSCEEEEEESSSSSCCBC-------
T ss_pred             CCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEec-----cCCCCCCEEEEEecCCEEEEecCCCCCCccee-------
Confidence            999999999887532 22444555666777888888     88   899999999999999998765321000       


Q ss_pred             eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                                .     +                            .....|...+.+++|+|||.++ ++++.|+.+++|
T Consensus       246 ----------~-----~----------------------------~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vw  281 (753)
T 3jro_A          246 ----------T-----L----------------------------LKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  281 (753)
T ss_dssp             ----------C-----B----------------------------SSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECC
T ss_pred             ----------E-----E----------------------------eccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEE
Confidence                      0     0                            0012466789999999999999 999999999999


Q ss_pred             eee
Q 008041          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      ++.
T Consensus       282 d~~  284 (753)
T 3jro_A          282 KEN  284 (753)
T ss_dssp             BCC
T ss_pred             ecC
Confidence            985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.9e-27  Score=242.83  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=186.9

Q ss_pred             CcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCeEEEEec---cCcc------cccccccc--------------cc
Q 008041            4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYG--------------NR   58 (579)
Q Consensus         4 ~~V~~l~~~fspdg--~~lasg~~dg~i~vwd~~~~~~~~~~~---~~~~------~~~~~~~~--------------~~   58 (579)
                      ++|  .+++|+|++  .+|++++.||+|++||+.++.......   .+.+      .+....+.              ..
T Consensus        94 ~~V--~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           94 EKI--NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             CCC--CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             Cce--EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence            678  455999998  799999999999999998765532110   0000      00000000              00


Q ss_pred             ccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEE------ecCCCCCCEEEEEEccCC-C
Q 008041           59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWR------LSDCHPGGVSAISFATHG-S  130 (579)
Q Consensus        59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~------~~~~h~~~V~~l~~~~~~-~  130 (579)
                      +..+| ...+.++.|.+.         +.++++| .||.|++||+.++ +....      ...+|...|++++|+|++ +
T Consensus       172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  240 (447)
T 3dw8_B          172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN  240 (447)
T ss_dssp             ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred             eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence            01123 345677888763         6778888 8999999999954 44332      246899999999999998 9


Q ss_pred             EEEEEeCCCcEEEEeCCCCce----eeEeecCCC------------CeeEEEEccCCCEEEEEC-CeEEEEECCC-Ceee
Q 008041          131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM  192 (579)
Q Consensus       131 ~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~~p~g~~l~~~~-~~i~vwd~~~-~~~~  192 (579)
                      +|++|+.||.|++||+++++.    +..+..|..            .|.+++|+|+|++|++++ +.|++||+++ ++.+
T Consensus       241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV  320 (447)
T ss_dssp             EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred             EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence            999999999999999999887    788888876            899999999999999988 9999999997 8888


Q ss_pred             EEeecCCCC---------------EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee-----------------
Q 008041          193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV-----------------  240 (579)
Q Consensus       193 ~~~~~h~~~---------------v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~-----------------  240 (579)
                      ..+.+|...               +..++|+|++++|++++ .|+.|++||+.+++.......                 
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA  399 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence            888888642               23489999999999887 799999999988753210000                 


Q ss_pred             -----------eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                                 ... .....+..+.|+     |++.+|++++.++ +++|..
T Consensus       400 ~~~~~~~~~~~~~~-~~~~~i~~~~~~-----p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          400 SGKRKKDEISVDSL-DFNKKILHTAWH-----PKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             SSCCCTTCEEGGGC-CTTSCCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred             cCCccccccccccc-ccCCceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence                       000 111234456676     9999999988775 777764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=7.1e-26  Score=229.15  Aligned_cols=265  Identities=13%  Similarity=0.099  Sum_probs=206.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-EEEECCC
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG   96 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g   96 (579)
                      .++++++.|+.|++||+.++++...+..+..                   ..++.|.+.         +..+ ++++.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-------------------~~~~~~s~d---------g~~l~~~~~~d~   54 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-------------------PMGAVISPD---------GTKVYVANAHSN   54 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-------------------EEEEEECTT---------SSEEEEEEGGGT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-------------------cceEEECCC---------CCEEEEECCCCC
Confidence            4677888999999999999999888764432                   234555443         5545 6666899


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE-
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML-  174 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l-  174 (579)
                      .|++||+.+++.+..+.. + ..+.+++|+|++++++.+ +.|+.|++||+.+++.+..+..+ ..+.+++|+|+|+.+ 
T Consensus        55 ~i~v~d~~~~~~~~~~~~-~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPA-G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             eEEEEECCCCeEEEEEEC-C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            999999999998876643 3 389999999999987654 46799999999999988887754 478999999999977 


Q ss_pred             EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       175 ~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (579)
                      ++++  +.|++||+.+++.+..+..| ..+.+++|+|++++++.++..|+.|++||+.+++..     ....+.. .+..
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~  204 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG  204 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence            5665  89999999999998888765 456999999999988655557899999999887533     3344443 4556


Q ss_pred             EEecCCcccCCCcEEEEEE---cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceE
Q 008041          253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  329 (579)
                      +.|+     |++++|++++   .++.|++||+.+++.+..                                        
T Consensus       205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~----------------------------------------  239 (391)
T 1l0q_A          205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITAR----------------------------------------  239 (391)
T ss_dssp             EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEE----------------------------------------
T ss_pred             eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEEE----------------------------------------
Confidence            7777     9999999988   689999999877653211                                        


Q ss_pred             EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                     +..|. .+.+++|+|||+++.++++.|+.+++|++.+
T Consensus       240 ---------------~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          240 ---------------IPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             ---------------EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ---------------EecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence                           11122 4578899999998757888899999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=232.99  Aligned_cols=250  Identities=18%  Similarity=0.194  Sum_probs=191.3

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| ++++|++|+.||.|++||+.+++....+.. .                  ....++.|.+..++ 
T Consensus        98 ~~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~-  155 (408)
T 4a11_B           98 HRYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E------------------ETVYSHHMSPVSTK-  155 (408)
T ss_dssp             CSSCE--EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S------------------SCEEEEEECSSCSS-
T ss_pred             CCCcE--EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-C------------------CceeeeEeecCCCC-
Confidence            45678  5569999 778999999999999999999998877642 1                  23445566555433 


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEe---
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKF---  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~-~~~~~---  155 (579)
                           +.++++++.+|.|++||+.+++.+..+ .+|...|++++|+|++++ +++++.||.|++||++++. .+..+   
T Consensus       156 -----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~  229 (408)
T 4a11_B          156 -----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH  229 (408)
T ss_dssp             -----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred             -----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence                 668999999999999999999887665 679999999999999985 8899999999999998765 33333   


Q ss_pred             ------------ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEE
Q 008041          156 ------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       156 ------------~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~s  216 (579)
                                  ..|...|.+++|+|+++++++++  |.|++||+.+++....+.++.     ..+........+..+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T 4a11_B          230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF  309 (408)
T ss_dssp             TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred             ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence                        56888999999999999999987  899999999987765543322     11222222233344555


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ++ .|+.|++||+.+++.     +..+..+...+.++.|+     |++.+|++++.||.|++||+.+++.+...
T Consensus       310 ~~-~~~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          310 VP-YGSTIAVYTVYSGEQ-----ITMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EE-ETTEEEEEETTTCCE-----EEEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC-------
T ss_pred             Ee-cCCEEEEEECcCCcc-----eeeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence            55 589999999998763     35556666677788888     99999999999999999999988776543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=229.80  Aligned_cols=234  Identities=10%  Similarity=0.047  Sum_probs=178.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCC---------eEEEEeccCccccccccccccccccccccccceEEee
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      .+|+.+  +|+|+   +++|+.|++|++|+....         +.+..+.                .+| ...+.++.|.
T Consensus        77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~v~~~~~~  134 (343)
T 3lrv_A           77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE----------------VDS-ANEIIYMYGH  134 (343)
T ss_dssp             ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE----------------CCC-SSCEEEEECC
T ss_pred             CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee----------------cCC-CCCEEEEEcC
Confidence            456545  88888   999999999999987643         3222222                011 1245566665


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-e
Q 008041           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-G  153 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~  153 (579)
                      +..       .+.++++|+.||.|++||+.+++........|...|++++|+|+|.++++|+.||.|++||+++++.. .
T Consensus       135 ~~~-------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~  207 (343)
T 3lrv_A          135 NEV-------NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS  207 (343)
T ss_dssp             C----------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE
T ss_pred             CCC-------CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc
Confidence            511       17789999999999999999999865554556778999999999999999999999999999999887 7


Q ss_pred             Eeec-CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec---CCCCEE--EEEEecCCCEEEEEecCCCeEEE
Q 008041          154 KFRA-STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       154 ~~~~-~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~---h~~~v~--~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      .+.. |..+|++++|+|+|.+|++++ +.|++||+++++.+..+..   |...+.  +++|+|+|++|++++..|+.+++
T Consensus       208 ~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v  287 (343)
T 3lrv_A          208 RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI  287 (343)
T ss_dssp             ECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence            8888 999999999999999999998 8999999999876555443   444454  69999999999998744999999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecCCcccC---CCcEEEEEEcCCeEEEEE
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY  280 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd  280 (579)
                      |++......     +..    .....+.|.     +   +...+++++.||.+.++-
T Consensus       288 ~~~~~~~~~-----~~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          288 YKFDKKTKN-----WTK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEECTTTCS-----EEE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred             EEEcccccc-----eEe----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence            999776533     111    233445554     5   788999999999998874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-27  Score=242.64  Aligned_cols=249  Identities=14%  Similarity=0.174  Sum_probs=189.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|  .+++|||||.+||+++.||.|+|||.++  +...+. |...+.             ...+.+++|.|.      
T Consensus        85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------  140 (588)
T 2j04_A           85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------  140 (588)
T ss_dssp             SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred             CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence            3567  6779999999999999999999999644  555554 433211             123446666553      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeE-------EEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~-------~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-  151 (579)
                         +.+|++|+.||+|++||+.++..       +..+   ..+|.+.|.+++|+|+|  +++++.|++|++||+..+.. 
T Consensus       141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred             ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence               88899999999999999998853       3333   26788999999999999  88889999999999987773 


Q ss_pred             --eeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEE--ecCCCEEEEEecCCCeEE
Q 008041          152 --LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       152 --~~~~-~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~s~~~~d~~i~  225 (579)
                        .+++ .+|...|.+++|+  |+.+++++ +.|++||+.+++......+|.+.|..+.|  +|++..+++++ +||+ +
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k  291 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K  291 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred             cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence              3456 4788899999999  68888888 99999999988774444489999999999  99998888876 7999 9


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcc
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      +|....                     +.++     ||+..+++.  |+++++|+..... +...+. ...+.+.. ++|
T Consensus       292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va-~SP  340 (588)
T 2j04_A          292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGIS-LSP  340 (588)
T ss_dssp             EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEE-ECT
T ss_pred             EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEE-ECC
Confidence            999771                     2244     888877664  9999999875443 434444 33333333 688


Q ss_pred             cccccchhhhhccc
Q 008041          306 SQKSATAAIFAAKL  319 (579)
Q Consensus       306 ~~~~~~~~i~~~~~  319 (579)
                      +++    .+++++.
T Consensus       341 dG~----~lA~~~~  350 (588)
T 2j04_A          341 DGY----SIAIVYD  350 (588)
T ss_dssp             TSS----EEEEEEE
T ss_pred             CCC----EEEEEEe
Confidence            877    5655554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.3e-26  Score=235.38  Aligned_cols=242  Identities=11%  Similarity=0.052  Sum_probs=188.8

Q ss_pred             cccceEEEEccCCCEE-EEEeCCCcEEEEECC--CCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~l~~~fspdg~~l-asg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +|  .+++|+|+|++| ++|+.||.|+|||+.  ++.....+..+.                ....++++.|.+.     
T Consensus       104 ~v--~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------~~~~v~~~~~sp~-----  160 (450)
T 2vdu_B          104 YI--RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC----------------FSKRPNAISIAED-----  160 (450)
T ss_dssp             CE--EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE----------------CSSCEEEEEECTT-----
T ss_pred             ce--EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc----------------CCCCceEEEEcCC-----
Confidence            57  556999999996 899999999999999  888777765211                0223455666553     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEE---EecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGK-  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~---~~~~~h~~~V~~l~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~-  154 (579)
                          +.+|++|+.+|.|++|++.+++...   ....+|...|++++|+|+   +++|++++.|+.|++||+.+++.+.. 
T Consensus       161 ----~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          161 ----DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             ----SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred             ----CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence                7789999999999999998876532   134679999999999999   99999999999999999999988887 


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec-------------------------CCCCEEEEEE
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------------------HPGAVRFMTF  207 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~-------------------------h~~~v~~l~~  207 (579)
                      +.+|...|.+++|+ ++++|++++  +.|++||+++++.+..+..                         +...|.++.|
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            56899999999999 999999998  8999999999998888763                         2357899999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEc--CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc------CCeEEEE
Q 008041          208 SDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIW  279 (579)
Q Consensus       208 s~~~~~l~s~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iw  279 (579)
                      +|+++++++++..|+.|++|++  .....  ...+..+..+ ..+..+.|+     |++.++++++.      ++.|.+|
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~~~~~~-~~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGD--LALKQIITFP-YNVISLSAH-----NDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTC--EEEEEEEECS-SCEEEEEEE-----TTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCc--eeeccEeccC-CceEEEEec-----CCcEEEEEecccCCCCCCcceEEE
Confidence            9999999998756999999999  43321  1234444444 445667776     75444444343      4557888


Q ss_pred             EcC
Q 008041          280 YGQ  282 (579)
Q Consensus       280 d~~  282 (579)
                      .+.
T Consensus       388 ~~~  390 (450)
T 2vdu_B          388 EYN  390 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1.8e-26  Score=228.91  Aligned_cols=251  Identities=10%  Similarity=0.008  Sum_probs=192.6

Q ss_pred             cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 008041           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMV  141 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v  141 (579)
                      ..++++.|.+.         +.++++++.+|.|++||+.+++   ..... .+|...|++++|+|+++ ++++++.||.|
T Consensus        12 ~~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A           12 DYISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             SCEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CcEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            35666777663         6789999999999999999877   22233 47999999999999999 99999999999


Q ss_pred             EEEeC-CCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---------CeeeEEeecCCCCEEEEEE
Q 008041          142 CEIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       142 ~iwd~-~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~  207 (579)
                      ++||+ .+++. ..+.+  |...|.+++|+| ++.+++++  +.|++||+++         ++.+..+. |...|.+++|
T Consensus        82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred             EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence            99999 77754 67788  999999999999 99999888  8999999988         77776666 8899999999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCC-CccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEcCCce
Q 008041          208 SDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       208 s~~~~~l~s~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      +|++  +++++ .|+.|++||++. ....   .......+...+.++.|+     | ++.++++++.||.|++|+++...
T Consensus       159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             CSSE--EEEEE-STTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             cCCc--EEEEe-CCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCC
Confidence            9987  77776 799999999988 5432   112223444556777887     9 99999999999999999987651


Q ss_pred             eecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008041          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                      .-...... .....      ...                             ..    .-..|...+.+++|+|+|.+| 
T Consensus       228 ~~~~~~~~-~~~~~------~~~-----------------------------~~----~~~~~~~~i~~~~~s~~~~~l-  266 (342)
T 1yfq_A          228 DDYNSSKR-FAFRC------HRL-----------------------------NL----KDTNLAYPVNSIEFSPRHKFL-  266 (342)
T ss_dssp             CSTTCTTC-EEEEC------CCC-----------------------------CT----TCCSSCCCEEEEEECTTTCCE-
T ss_pred             cccccccc-eeeec------ccc-----------------------------cc----cccccceeEEEEEEcCCCCEE-
Confidence            00000000 00000      000                             00    001466689999999999999 


Q ss_pred             ccccceecccceeeee
Q 008041          366 MSQSLLKSKRGRYVQN  381 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~~  381 (579)
                      ++++.|+.+++|++.+
T Consensus       267 ~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          267 YTAGSDGIISCWNLQT  282 (342)
T ss_dssp             EEEETTSCEEEEETTT
T ss_pred             EEecCCceEEEEcCcc
Confidence            9999999999999853

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=2.2e-26  Score=232.96  Aligned_cols=239  Identities=10%  Similarity=0.007  Sum_probs=161.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEE-----eccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTE-----FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      .+++++.+||+|+.|++|+|||..++.....     +.+|...                  +.++.|.|..... ...++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~------------------v~~v~~~p~~~~~-~~~d~  156 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF------------------VNDIDIADVYSAD-NRLAE  156 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC------------------EEEEEEEEEECTT-CSEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCc------------------eEEEEEccccccc-cCCCC
Confidence            4566778999999999999999998876432     3344444                  4455555421100 00016


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF----------  155 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~----------  155 (579)
                      .+|++|+.|++|+|||+.++..+..+ .+|..+|.+++|+|++. +|++++.|++|++||+.+++.....          
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             CEEEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            78999999999999999988876565 46889999999999875 7999999999999999887543322          


Q ss_pred             ---------------ecCCCCeeEEEEc-cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec--------
Q 008041          156 ---------------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--------  209 (579)
Q Consensus       156 ---------------~~~~~~v~~l~~~-p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~--------  209 (579)
                                     .+|...+.++.|+ |+|+.+++++  +.+++||+.+++....+..|...+..+.+.|        
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence                           3466788999987 7999999998  8999999998877766666655544443332        


Q ss_pred             -----------CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041          210 -----------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       210 -----------~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  278 (579)
                                 .+..++++++.|+.|++||+.+++..     .....+...+..++|+     |||++||+++.+| +.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-----~~~~~~~~~V~svafs-----pdG~~LA~as~~G-v~l  384 (393)
T 4gq1_A          316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-----SIPIQLGMPIVDFCWH-----QDGSHLAIATEGS-VLL  384 (393)
T ss_dssp             CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-----EEEEECSSCEEEEEEC-----TTSSEEEEEESSE-EEE
T ss_pred             CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-----EEecCCCCcEEEEEEc-----CCCCEEEEEeCCC-eEE
Confidence                       23445555558999999999987644     2223344467788888     9999999998766 555


Q ss_pred             EEc
Q 008041          279 WYG  281 (579)
Q Consensus       279 wd~  281 (579)
                      |.+
T Consensus       385 vrL  387 (393)
T 4gq1_A          385 TRL  387 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=8.1e-25  Score=209.04  Aligned_cols=248  Identities=14%  Similarity=0.089  Sum_probs=178.0

Q ss_pred             EEEEEeCCCcEEEEECCCC---eEEEEeccCccccccccccccc------ccccc-ccccceEEeeecccccc-------
Q 008041           19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRL------EREHL-SVDYTCMKWLSVDRKKK-------   81 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~w~~~~~~~~-------   81 (579)
                      .+++++ ...|++|+..++   +..+++..+..++..+.+.++.      .-|++ ...+..+.+.|.++...       
T Consensus        56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            455566 568999999999   8999999999999988888841      11222 12344444444421100       


Q ss_pred             -----cccCCcEEEEEE---CCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC
Q 008041           82 -----RKLGSSLLVLGT---GGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        82 -----~~~~~~~l~~~~---~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~~~d~~v~iwd~~~~  149 (579)
                           .......++.++   .++.|++|++. +|+.+... .+|...++.++|+|   ++..|++++.|++|++||+.+|
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG  213 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG  213 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence                 001122333333   37889999984 46665544 47888888889988   7789999999999999999999


Q ss_pred             ceeeEeecCCC---CeeEEEEccCCCEEE------------EEC--CeEEEEECCCCeeeEEe-----ecCCCCEEEEEE
Q 008041          150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF  207 (579)
Q Consensus       150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~------------~~~--~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~  207 (579)
                      ++++++.+|..   .+.+++|+|+|++++            +|+  ++|++||..+++.+..+     .+|...+.+..+
T Consensus       214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~  293 (356)
T 2w18_A          214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV  293 (356)
T ss_dssp             CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred             cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence            99999986543   677889999999874            344  79999999999987765     367666544444


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       208 s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      +  +.++++++ .|++|++||+.+++.     +.++. |....+..+.|+     |||++|++|+.|++|+|||+
T Consensus       294 s--g~~lASgS-~DgTIkIWDl~tGk~-----l~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 K--DHCAAAIL-TSGTIAIWDLLLGQC-----TALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             E--TTEEEEEE-TTSCEEEEETTTCSE-----EEEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred             C--CCEEEEEc-CCCcEEEEECCCCcE-----EEEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence            3  77888877 799999999999873     34554 444455567888     99999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=223.96  Aligned_cols=272  Identities=11%  Similarity=0.021  Sum_probs=193.6

Q ss_pred             EECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEE
Q 008041           32 WDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKW  110 (579)
Q Consensus        32 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~  110 (579)
                      |+....+.+..+.+|...+.                  ++.|.+....      +.++++|+.||.|++||+.+ +..+.
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~~~------g~~l~~~~~dg~i~iw~~~~~~~~~~   79 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIG------------------CLSFSPPTLP------GNFLIAGSWANDVRCWEVQDSGQTIP   79 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEE------------------EEEECCTTSS------SEEEEEEETTSEEEEEEECTTSCEEE
T ss_pred             CCCCCcceeEeccCCCCceE------------------EEEEcCCCCC------ceEEEEECCCCcEEEEEcCCCCceeE
Confidence            34455556666666655554                  4555443211      47899999999999999998 66554


Q ss_pred             EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE--ccCCCEEEEEC--CeEEEEEC
Q 008041          111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA--GQLKTFNC  186 (579)
Q Consensus       111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~p~g~~l~~~~--~~i~vwd~  186 (579)
                      ....+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|  +|+++++++++  |.|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            5557899999999999999999999999999999999888766 5568999999999  89999999987  89999999


Q ss_pred             CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC--
Q 008041          187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG--  264 (579)
Q Consensus       187 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  264 (579)
                      ++++.+..+..|. .+.++.+.+  ..+++++ .|+.+.+|++......   .............+..+.     +++  
T Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~  226 (368)
T 3mmy_A          159 RSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AERGLIVYQLENQPSE---FRRIESPLKHQHRCVAIF-----KDKQN  226 (368)
T ss_dssp             SCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GGGCEEEEECSSSCEE---EEECCCSCSSCEEEEEEE-----ECTTS
T ss_pred             CCCcEEEEEecCC-CceEEEecC--CeeEEEe-CCCcEEEEEeccccch---hhhccccccCCCceEEEc-----ccCCC
Confidence            9999998888664 666666664  4667776 5999999999876532   111111111222233322     222  


Q ss_pred             --cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCcee
Q 008041          265 --LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF  342 (579)
Q Consensus       265 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~  342 (579)
                        ..+++++.||.|++||+..........    ...      ....                              ....
T Consensus       227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~----~~~------~~~~------------------------------~~~~  266 (368)
T 3mmy_A          227 KPTGFALGSIEGRVAIHYINPPNPAKDNF----TFK------CHRS------------------------------NGTN  266 (368)
T ss_dssp             CEEEEEEEETTSEEEEEESSCSCHHHHSE----EEE------CSEE------------------------------C---
T ss_pred             CCCeEEEecCCCcEEEEecCCCCccccce----eee------eeec------------------------------cccc
Confidence              339999999999999987653211000    000      0000                              0000


Q ss_pred             EEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          343 QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       343 ~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      .....|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus       267 ~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             -CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred             ccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence            0122456689999999999999 9999999999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=4.2e-24  Score=216.07  Aligned_cols=239  Identities=10%  Similarity=0.065  Sum_probs=188.8

Q ss_pred             eEEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+++|+|+|+++ ++++.|+.|++||..+++....+..+.                   .+.++.|.+.         +.
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spd---------g~   86 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPD---------GK   86 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SS
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCC---------CC
Confidence            566999999987 567789999999999999988776432                   3344555443         55


Q ss_pred             EEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           88 LLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      .+++ +..++.|++||+.+++.+..+.  +...+.+++|+|+|+.+ ++++.|+.|++||+.+++.+..+..+ ..+.++
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence            5554 4567999999999999876653  44578999999999987 67788999999999999988888765 467999


Q ss_pred             EEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceee
Q 008041          166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       166 ~~~p~g~~l~-~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      +|+|+|+.++ +++  +.|++||+++++.+..+. +...+.+++|+|+++++++++.  .++.|++||+.+++..     
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-----  237 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----  237 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence            9999999874 554  799999999998887776 5567899999999999998874  5899999999887533     


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEE-EEEEcCCeEEEEEcCCceeeccc
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ..+..+.. ...+.++     |++++| ++++.|+.|++||+.+++.+..+
T Consensus       238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            33333333 4556776     999887 56678999999999998876544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=4.8e-25  Score=219.89  Aligned_cols=233  Identities=12%  Similarity=0.094  Sum_probs=173.8

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++++++++++ +|+.|++|+|||..+++++..+. +...+                  .++.|.+           ..
T Consensus        63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v------------------~~v~~~~-----------~~  112 (355)
T 3vu4_A           63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPV------------------KDLFLSR-----------EF  112 (355)
T ss_dssp             EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCE------------------EEEEECS-----------SE
T ss_pred             EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCce------------------EEEEEcC-----------CE
Confidence            348888888885 56778999999999999988775 22223                  3333322           22


Q ss_pred             EEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEE--EeCCCcEEEEeCCCCc---------------
Q 008041           89 LVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS---------------  150 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s--~~~d~~v~iwd~~~~~---------------  150 (579)
                      ++++ .++.|++||+.++ +.+..+. .   +...+++++  .++++  |+.||.|++||+.+++               
T Consensus       113 ~~~~-~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~  185 (355)
T 3vu4_A          113 IVVS-YGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL  185 (355)
T ss_dssp             EEEE-ETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred             EEEE-EcCEEEEEECCCCceeeEEec-c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence            3443 5789999999988 5543332 1   455566777  56655  5789999999998765               


Q ss_pred             -eeeEeecCCCCeeEEEEccCCCEEEEEC--Ce-EEEEECCCCeeeEEee-c-CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          151 -LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       151 -~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~-i~vwd~~~~~~~~~~~-~-h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                       .+..+.+|...|++++|+|+|++|++|+  ++ |++||+++++++.++. + |...|.+++|+|++++|++++ .|++|
T Consensus       186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v  264 (355)
T 3vu4_A          186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTL  264 (355)
T ss_dssp             -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEE
T ss_pred             cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEE
Confidence             2678999999999999999999999998  87 9999999999999998 5 999999999999999999988 79999


Q ss_pred             EEEEcCCCcccccee-----------------eeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          225 ALWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      ++||+..........                 .+.+.. .......+.|+     +++++|++++.||.+++|++..++
T Consensus       265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCC
Confidence            999998764221100                 000110 01112445676     999999999999999999976543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.4e-25  Score=214.30  Aligned_cols=212  Identities=11%  Similarity=0.053  Sum_probs=160.2

Q ss_pred             CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEE-eccCcccccccccccccc-----ccccccccceEEe
Q 008041            4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLE-----REHLSVDYTCMKW   73 (579)
Q Consensus         4 ~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~w   73 (579)
                      ++|+.+  +||||    ++++++++.+  ++||++.+++.+.. ..+|...+....++++-.     .+| ....+.+.|
T Consensus       112 ~~v~sl--a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~-~~~v~~l~f  186 (356)
T 2w18_A          112 REIRAL--FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM-PPEETILTF  186 (356)
T ss_dssp             EEEEEE--CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC-CCSSCEEEE
T ss_pred             cceEEE--EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC-CCceeeEEe
Confidence            356555  99999    9999998854  78899988888777 467888888777776510     011 345667777


Q ss_pred             eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEE------------EEEeCCC
Q 008041           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGADG  139 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l------------~s~~~d~  139 (579)
                      .+.+..      +.+|++|+.|++|+|||+.+|+++..+..+|  ...+.+++|+|+|.++            ++|+.|+
T Consensus       187 s~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          187 AEVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             EEEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred             eccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence            774433      7899999999999999999999987774332  3468888999999876            5678899


Q ss_pred             cEEEEeCCCCceeeEe-----ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE-EEEEecCC
Q 008041          140 MVCEIDPLTGSLLGKF-----RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSDNG  211 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~-~l~~s~~~  211 (579)
                      +|++||..+++.+..+     .+|...+.+..+  ++..+++++  ++|+|||+.+++++.++.+|...+. +++|+|||
T Consensus       261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             EEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            9999999999887765     355555544444  478889887  8999999999999999999987655 68999999


Q ss_pred             CEEEEEecCCCeEEEEEc
Q 008041          212 KYVLSSAVGERYIALWRT  229 (579)
Q Consensus       212 ~~l~s~~~~d~~i~vwd~  229 (579)
                      ++|++++ .|++|++||+
T Consensus       339 ~~LaSGS-~D~TIklWd~  355 (356)
T 2w18_A          339 SHLLAGQ-KDGNIFVYHY  355 (356)
T ss_dssp             SEEEEEC-TTSCEEEEEE
T ss_pred             CEEEEEE-CCCcEEEecC
Confidence            9999987 7999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.1e-24  Score=228.87  Aligned_cols=323  Identities=8%  Similarity=-0.012  Sum_probs=227.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +|+|++.++++++.|++|.+||..+++++.++..... +..+.|+++                           +.++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v  195 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV  195 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence            5899999999999999999999999999988863222 333444444                           888999


Q ss_pred             EECCCeEEEEEc--cCCeEEEEecCCCCCCEEEEEEcc----CCCEEEEEe-CCCcEEEEeCCCCceeeEeecC------
Q 008041           92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------  158 (579)
Q Consensus        92 ~~~~g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~------  158 (579)
                      ++.++.|.+||+  .+++.+..+.  +...+..++|+|    +|+++++++ .+++|.+||..+++++.++..+      
T Consensus       196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence            999999999999  8888877663  456789999999    999999888 4899999999999998887642      


Q ss_pred             -----CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          159 -----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       159 -----~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                           ...+.++.++|++..+++..   +.|.+||..+.+.+.  .+ .+...+..+.|+|+|+++++++..+++|.+||
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                 22788999999887766554   899999998876544  44 35667889999999999887776789999999


Q ss_pred             cCCCccccceeeeee---ecCceeEEeEEecCCcccCC-CcEEEEEE-cCCeEEEEEcCC-------ceeecccCCeeEE
Q 008041          229 TDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKIL  296 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~  296 (579)
                      +.+++..   .....   .|+.....  ++.     |+ +..++++. .|++|.+||..+       ++.++.++.....
T Consensus       353 ~~tg~l~---~~i~~g~~ph~g~g~~--~~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          353 SKDRRLS---ALVDVGKTPHPGRGAN--FVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             TTTTEEE---EEEECSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             CCCCeEE---EeeccCCCCCCCCCcc--cCC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            9998643   11111   13322222  233     66 55566665 589999999988       6665554432211


Q ss_pred             eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE--------ecCCCCcEEEeecCCcceeeccc
Q 008041          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ  368 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~~~~s~dg~~l~~s~  368 (579)
                      ... ..++|+++    .+++++.-+--.-.+..+.+.+-......++.+        ..+...+..+.|+|||+.+.+|.
T Consensus       423 ~~~-v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          423 SLF-IKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             CCC-EECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             ceE-EEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence            111 12577777    566654211000002234444432222222443        24566799999999999984442


Q ss_pred             ----cceecccceeee
Q 008041          369 ----SLLKSKRGRYVQ  380 (579)
Q Consensus       369 ----s~d~~~~~w~~~  380 (579)
                          +.|++|.+|+.+
T Consensus       498 ~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          498 WNGKNDSSALVVVDDK  513 (543)
T ss_dssp             ECCTTSCCEEEEEETT
T ss_pred             ecCCCCCCeEEEEECC
Confidence                358999999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.1e-23  Score=214.48  Aligned_cols=311  Identities=9%  Similarity=-0.029  Sum_probs=214.0

Q ss_pred             EEccCCC-EEEEEe----CCC----cEEEEEC--CCCeEE--EEeccCccccccccccccccccccccccceEEeeeccc
Q 008041           12 SFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus        12 ~fspdg~-~lasg~----~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +|++.|. ++++|+    .||    .|++||+  .+++++  ..+.++...+....+.+.      ...+....+.+   
T Consensus        69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~g~~---  139 (415)
T 2hqs_A           69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTAS------DEVFEKLTGIK---  139 (415)
T ss_dssp             HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHH------HHHHHHHHSSC---
T ss_pred             HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHH------HHHHHHHcCCC---
Confidence            7888874 666876    467    8999999  899877  446666655544433321      00000000000   


Q ss_pred             ccccccCCcEEEEEECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCC
Q 008041           79 KKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTG  149 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---~v~iwd~~~~  149 (579)
                          ...+..++.++.+      +.|++||+..+.. ..+ .+|...|.+++|+|+|++|++++.++   .|++||+.++
T Consensus       140 ----~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          140 ----GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             ----CCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             ----CcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence                0003345555543      6899999986543 233 46889999999999999999999875   9999999988


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEE-EEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--
Q 008041          150 SLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--  222 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~-~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--  222 (579)
                      +.. .+..+...+.+++|+|||+.|+ +++    ..|++||+.+++. ..+..|...+.++.|+|||++|++++..++  
T Consensus       214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence            775 4666788999999999999888 554    3699999998875 567788899999999999999998874345  


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCceeecccCCeeEEeee
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      .|++||+.+++..      .+..+...+....|+     |+|++|++++.+   +.|++||+.+++...-. ... .+..
T Consensus       292 ~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~~~-~~~~  358 (415)
T 2hqs_A          292 QVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STF-LDET  358 (415)
T ss_dssp             EEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSS-SCEE
T ss_pred             EEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEEEec-CCC-CcCC
Confidence            6788898876532      222233445567777     999999988874   58999999988654322 211 1111


Q ss_pred             ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcce
Q 008041          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL  363 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (579)
                       ..++|+++    .|+.++.++.    ...+.+..-  .....+.+..|...|.+++|+|--.+
T Consensus       359 -~~~spdg~----~l~~~s~~~~----~~~l~~~d~--~g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          359 -PSLAPNGT----MVIYSSSQGM----GSVLNLVST--DGRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             -EEECTTSS----EEEEEEEETT----EEEEEEEET--TSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             -eEEcCCCC----EEEEEEcCCC----ccEEEEEEC--CCCcEEEeeCCCCCCcCCcccccccc
Confidence             12677877    6766666531    123444331  23445677889999999999997654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.7e-23  Score=214.74  Aligned_cols=236  Identities=9%  Similarity=0.055  Sum_probs=187.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ++|  .+++|+|+|+++++++.|+.|++||+.+++....+..+...+.                  ++.|.+.       
T Consensus       170 ~~v--~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~------------------~~~~~~~-------  222 (433)
T 3bws_A          170 GFV--ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK------------------ILLYDPI-------  222 (433)
T ss_dssp             CEE--EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE------------------EEEEETT-------
T ss_pred             Cce--eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee------------------EEEEcCC-------
Confidence            356  4559999999999999999999999999998888765554444                  4444432       


Q ss_pred             cCCcEEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--------CCCcEEEEeCCCCceeeE
Q 008041           84 LGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        84 ~~~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--------~d~~v~iwd~~~~~~~~~  154 (579)
                        +..++ +++.++.|++||+.+++.+..+ . +...+.+++|+|+|+++++++        .|+.|++||+.+++.+..
T Consensus       223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~  298 (433)
T 3bws_A          223 --RDLVYCSNWISEDISVIDRKTKLEIRKT-D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT  298 (433)
T ss_dssp             --TTEEEEEETTTTEEEEEETTTTEEEEEC-C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred             --CCEEEEEecCCCcEEEEECCCCcEEEEe-c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence              55554 5557899999999999887665 3 345699999999999999888        488999999999987776


Q ss_pred             eecCCCCeeEEEEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----------
Q 008041          155 FRASTKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----------  220 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~-~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-----------  220 (579)
                      +. +...+.+++|+|+++.++ +++  +.|++||+.+++.+..+. +...+.+++|+|+++++++++..           
T Consensus       299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred             cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence            63 456889999999997654 444  899999999999888776 77889999999999988887743           


Q ss_pred             ---CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCC
Q 008041          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (579)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  283 (579)
                         ||.|++||+.+++..     ..+... ..+..+.|+     |+|++|++++. ||.|++|+++.
T Consensus       377 g~~dg~v~~~d~~~~~~~-----~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          377 GLVLGKVYVIDTTTDTVK-----EFWEAG-NQPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CSSCCEEEEEETTTTEEE-----EEEECS-SSEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred             cccceEEEEEECCCCcEE-----EEecCC-CCCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence               469999999887633     333333 345667777     99999998875 99999999763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5.7e-23  Score=225.88  Aligned_cols=341  Identities=9%  Similarity=0.043  Sum_probs=216.3

Q ss_pred             CcccceEEEEccCCCEEEEEeC-CC-----cEEEEECCCCeEEEEeccCcccccccccccc--cc--ccccc--cccceE
Q 008041            4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNR--LE--REHLS--VDYTCM   71 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~--~~~~~~   71 (579)
                      .+|  ..++|||||++|++++. |+     .|++||+.+++....+..+........++..  ..  ..+..  ..+..+
T Consensus        37 ~~~--~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           37 PTL--MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCC--EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCC--CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            456  45599999999999998 88     8999999999887766543221000000000  00  00000  124455


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008041           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~  148 (579)
                      .|.|.         +..|++++. +.|++||+.++   +.. .+ ..|...+.+++|+|||++|++++ ++.|++||+.+
T Consensus       115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence            66553         677888876 99999999988   543 33 46778899999999999999887 56899999998


Q ss_pred             CceeeEeecCCCC----------------eeEEEEccCCCEEEEEC--C-------------------------------
Q 008041          149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G-------------------------------  179 (579)
Q Consensus       149 ~~~~~~~~~~~~~----------------v~~l~~~p~g~~l~~~~--~-------------------------------  179 (579)
                      ++.......+...                +.+++|+|||+.|++++  +                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            8776554443332                47899999999998875  3                               


Q ss_pred             --eEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEec----CCCeEEEEEcCCCccccceeeeeeecCce--
Q 008041          180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV--  248 (579)
Q Consensus       180 --~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--  248 (579)
                        .|++||+.+ ++......  .|...+..++| |||++|++++.    .+..|++||+.+++..   .+........  
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~  337 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP  337 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence              789999988 87654433  47788999999 99999987653    2567999999987643   2222211111  


Q ss_pred             eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC-CceeecccCCeeEEeeeccCCcccccccchhhh-hccccceecCC
Q 008041          249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIF-AAKLQDIVKPA  326 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~  326 (579)
                      .+....|+     |||+++++++.||.+++|.++ +++ ...+......+.....++++++    .|+ +++.++   ..
T Consensus       338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~---~~  404 (741)
T 2ecf_A          338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIES---AR  404 (741)
T ss_dssp             CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSC---TT
T ss_pred             cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCC---Cc
Confidence            22355666     999988998899988887665 233 3333222211111111566766    443 333322   00


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce---ecccceee
Q 008041          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYV  379 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~  379 (579)
                      ...++.....  ......+.. ...+..++|||||++++++.+..   ..+++++.
T Consensus       405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            1223333211  112233433 45678999999999985554432   34566654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=5.9e-22  Score=195.42  Aligned_cols=287  Identities=9%  Similarity=0.050  Sum_probs=195.0

Q ss_pred             EEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fspdg~~-lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      .|++++++ +++++.++.|.+||..+++....+..+...+                   .+.|.+.         +..++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~s~d---------g~~l~   55 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-------------------DTAITSD---------CSNVV   55 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-------------------EEEECSS---------SCEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-------------------eEEEcCC---------CCEEE
Confidence            47777665 6677789999999999999887765332222                   3333332         55556


Q ss_pred             EEEC-CCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        91 ~~~~-~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+ ..+.++
T Consensus        56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~  133 (331)
T 3u4y_A           56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI  133 (331)
T ss_dssp             EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred             EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence            5555 88999999999987 4444 44566666699999999998555443   8999999999988887653 456999


Q ss_pred             EEccCCCEEEEEC---Ce-EEEEECCCCeee----EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       166 ~~~p~g~~l~~~~---~~-i~vwd~~~~~~~----~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      +|+|+|+++++++   +. |.+|++.....+    .....+......++|+|+|+++++++..++.|.+||+.+++... 
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-  212 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-  212 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence            9999998666654   67 999998864333    12223445679999999999877776678999999998876410 


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                       .+..+... .....+.|+     |+|+++++++. ++.|.+||..+++.....     .... . ...+.         
T Consensus       213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~-~-~~~~~---------  269 (331)
T 3u4y_A          213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGH-G-LLIDP---------  269 (331)
T ss_dssp             -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEEC-C-CCCCC---------
T ss_pred             -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----cccc-c-cccCC---------
Confidence             12333333 333456676     99998877654 788999999887652100     0000 0 00000         


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                                                    .+......++|+|||++|.++++.++.+++|++.+.
T Consensus       270 ------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          270 ------------------------------RPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             ------------------------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             ------------------------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence                                          001122567899999988566777789999998643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=7.5e-23  Score=224.25  Aligned_cols=321  Identities=9%  Similarity=0.044  Sum_probs=206.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|||||+++++ +.||+|++||+.+++....+..+...               ...+..+.|.|.         +..
T Consensus        20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~---------------~~~v~~~~~SpD---------g~~   74 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REY   74 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSE
T ss_pred             cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc---------------ccccceEEECCC---------CCE
Confidence            45599999998876 78999999999999887776644321               001233444432         777


Q ss_pred             EEEEECC---------CeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           89 LVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        89 l~~~~~~---------g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                      |++++.+         +.|++||+.+++.. .+.  .+|...+..++|+|||+.|++++. +.|++||+.+++.......
T Consensus        75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            8888764         77999999998762 222  345556899999999999999875 7899999998887766554


Q ss_pred             CCCCe------------------eEEEEccCCCEEEEEC--C----------------------------------eEEE
Q 008041          158 STKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QLKT  183 (579)
Q Consensus       158 ~~~~v------------------~~l~~~p~g~~l~~~~--~----------------------------------~i~v  183 (579)
                      +...+                  .+++|+|||+.|++++  +                                  .|++
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            44333                  7899999999998875  2                                  7999


Q ss_pred             EECCCCeeeEEeecC------CCCEEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccceeeeeeecCceeE---E
Q 008041          184 FNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFM---D  251 (579)
Q Consensus       184 wd~~~~~~~~~~~~h------~~~v~~l~~s~~~~~l~s~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~  251 (579)
                      ||+.+++....+..+      ...+..++|+|||+++++.+.   .+..|++||+.+++..   .+....+.....   .
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQNE  309 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEeccCC
Confidence            999998866666654      567899999999998876642   2357999999887633   222222222111   2


Q ss_pred             eEEecCCcccCCCcEEEEE--EcCC------eEEEEE-cCCcee--ecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041          252 CRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ...|+     |||+.|+..  ..+|      .|++|| ..+++.  ...+......+.....++++++    .|+..+.+
T Consensus       310 ~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~~~  380 (723)
T 1xfd_A          310 EPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLSTE  380 (723)
T ss_dssp             CCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEESS
T ss_pred             CceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEEcC
Confidence            45666     999977754  4567      577777 344430  2222211111111112677777    55544333


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEec---CCCCcEEEeecCCcceeeccccce
Q 008041          321 DIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL  371 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~~s~s~d  371 (579)
                      +.  .....++...-.. ......+..   |...+..++|||||++++++.+.+
T Consensus       381 ~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          381 DL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             SC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             CC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            10  0122333332110 001112222   566688999999999885555443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.7e-20  Score=186.49  Aligned_cols=243  Identities=13%  Similarity=0.092  Sum_probs=184.6

Q ss_pred             eEEEEccCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            9 ILTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         9 l~~~fspdg~~lasg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..++|+|+|+++++++.       ++.|.+||..+++....+.... .                  ...+.|.+.     
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~------------------~~~~~~s~d-----   99 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-K------------------PFGATINNT-----   99 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-C------------------CCSEEEETT-----
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-C------------------cceEEECCC-----
Confidence            34599999999888774       5689999999999887775321 1                  223344432     


Q ss_pred             cccCCcEE-EEEECCCeEEEEEccCCeEEEEecCCCCC--------CEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCc
Q 008041           82 RKLGSSLL-VLGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGS  150 (579)
Q Consensus        82 ~~~~~~~l-~~~~~~g~i~iwd~~~~~~~~~~~~~h~~--------~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~  150 (579)
                          +..+ ++...++.|.+||+.+++.+..+..++..        .+.++.|+|+|+++++++  .++.|.+||+.+++
T Consensus       100 ----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A          100 ----TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             ----TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred             ----CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence                5544 44555789999999999987666432222        278999999999877776  47899999999999


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                      .+..+..+...+.+++|+|+|+.+++++  +.|.+||..+++.+..+..    +...+..++|+|+++++++++..++.|
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  255 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEV  255 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence            9888875666788999999999988887  8999999999998877764    556688899999999888877566999


Q ss_pred             EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecccC
Q 008041          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  291 (579)
                      .+||+.+++..     ........  ..+.|+     |+|+++++++ .++.|.+||..+++.+....
T Consensus       256 ~~~d~~~~~~~-----~~~~~~~~--~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          256 LVVDTRNGNIL-----AKVAAPES--LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             EEEETTTCCEE-----EEEECSSC--CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCcEE-----EEEEcCCC--ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999887643     22222221  345666     9999777666 58999999999988765543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=3.3e-21  Score=202.29  Aligned_cols=274  Identities=10%  Similarity=0.052  Sum_probs=202.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCCceeeEeecCCCCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~--~~~~~~~~~~~~~~~v~  163 (579)
                      +.++++++.++.|.+||..+++++..+..++.  +.+++|+|+|+++++++.|++|++||+  .+++.+.++.. ...+.
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~  225 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEAR  225 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEE
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcc
Confidence            66788888899999999999999877754554  899999999999999999999999999  88988888884 45679


Q ss_pred             EEEEcc----CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------P-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       164 ~l~~~p----~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h----------~-~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      .++|+|    ||+++++++   ++|.+||..+++++.++..+          . ..+..+.++|+++.++++...++.|.
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~  305 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  305 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence            999999    999999887   89999999999998887642          2 36889999998887777777899999


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecccCCeeEEe--eeccC
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILS--SSEDV  302 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~  302 (579)
                      +||+.+.+..   .+..+.+ ......+.|+     |+|+++++++ .+++|.+||..+++.+.........-  .....
T Consensus       306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred             EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence            9999886543   1223333 3344556777     9999877665 58999999999998765443110000  00000


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCC------CCceeEEEecCCCCcEEEeecCCcceeecccc-------
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-------  369 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s-------  369 (579)
                      +.+++..   .++++...      ++.+.+.+-..      ...+.+++.+|...+..++++|||++| .+++       
T Consensus       377 ~~p~~g~---~~~s~~~~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~~  446 (543)
T 1nir_A          377 VHPKYGP---VWSTSHLG------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDAR  446 (543)
T ss_dssp             EETTTEE---EEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSHH
T ss_pred             CCCCCcc---EEEeccCC------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCcc
Confidence            1233221   33333321      23333333221      256788999998889999999999999 6665       


Q ss_pred             ceecccceeeee
Q 008041          370 LLKSKRGRYVQN  381 (579)
Q Consensus       370 ~d~~~~~w~~~~  381 (579)
                      .++++.+|++.+
T Consensus       447 ~~~~v~v~d~~~  458 (543)
T 1nir_A          447 ISQSVAVFDLKN  458 (543)
T ss_dssp             HHTCEEEEETTC
T ss_pred             cCceEEEEECCC
Confidence            378999999853

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=6.2e-21  Score=194.11  Aligned_cols=225  Identities=15%  Similarity=0.118  Sum_probs=171.6

Q ss_pred             CCEEEEEeCC------CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        17 g~~lasg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +..+++++.+      +.|++||...+ ....+.+|...+....|+++                           +..|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd---------------------------g~~la  194 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD---------------------------GSKLA  194 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT---------------------------SSEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC---------------------------CCEEE
Confidence            6677777654      79999999754 34555555544444444444                           77889


Q ss_pred             EEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeE
Q 008041           91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        91 ~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +++.++   .|++||+.+++.. .+ ..|...+.+++|+|||+.|+ +++.|+.  |++||+.+++. ..+..|...+.+
T Consensus       195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~  271 (415)
T 2hqs_A          195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE  271 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred             EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence            888875   8999999999875 33 45788999999999999877 6666654  99999988876 566778889999


Q ss_pred             EEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccc
Q 008041          165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSA  237 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~~~~  237 (579)
                      ++|+|||+.|++++   +  .|++||+.+++. ..+..|...+.+++|+|+|++|++++..+  ..|++||+.+++..  
T Consensus       272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--  348 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--  348 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred             eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence            99999999888765   2  788899988764 45566778899999999999999887532  58999999887532  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCce
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE  285 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~  285 (579)
                          .+..+. .+....|+     |+|++|++++.++   .|++||+..+.
T Consensus       349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCCc
Confidence                222222 55667777     9999999998877   89999987543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=2.4e-21  Score=211.71  Aligned_cols=333  Identities=9%  Similarity=0.034  Sum_probs=204.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCcccccccccccccc-ccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLE-REHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|+  |+.+++++.|+ | +||+.+|+.+ ..+..+.....  .++..-. .......+.++.|.+.          ..+
T Consensus        32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd----------~~~   95 (706)
T 2z3z_A           32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCKFQTTDAFPSFRTLDAGR----------GLV   95 (706)
T ss_dssp             EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-----------CCCEEEEETTT----------TEE
T ss_pred             cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhccccccccCceeEEECCC----------CeE
Confidence            777  66777788788 8 9999999873 33322211000  0000000 0000134566777653          224


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CceeeEeecCCCC---
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKG---  161 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~~~~~---  161 (579)
                      +.+ .++.|++||+.+++.....  .+...+.+++|+|||++++++ .|+.|++||+.+     ++.......+...   
T Consensus        96 ~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           96 VLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             EEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            444 5699999999998775333  466778999999999999885 689999999988     7766544433332   


Q ss_pred             -----------eeEEEEccCCCEEEEEC-----------------------------------CeEEEEECCCCeeeEEe
Q 008041          162 -----------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       162 -----------v~~l~~~p~g~~l~~~~-----------------------------------~~i~vwd~~~~~~~~~~  195 (579)
                                 +.+++|+|||+.|++++                                   ..|++||+.+++.....
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       48999999999998874                                   57999999998765443


Q ss_pred             e--cCCCCEEEEEEecCCCEEEEEecCCC-----eEEEEEcCCCccccceeeeeeecCce--eEEeEEecCCcccC--CC
Q 008041          196 S--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDD--AG  264 (579)
Q Consensus       196 ~--~h~~~v~~l~~s~~~~~l~s~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~  264 (579)
                      .  .|...+.+++|+|||++|++++ .|+     .|.+||+.+++..  ..+........  .+..+.|+     |  ||
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~s-----p~~dg  323 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFV--RTLFVETDKHYVEPLHPLTFL-----PGSNN  323 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEE--EEEEEEECSSCCCCCSCCEEC-----TTCSS
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCcee--eEEEEccCCCeECccCCceee-----cCCCC
Confidence            2  4667899999999999998876 354     8999999987322  12222122211  12345666     9  99


Q ss_pred             cEEEEEEcCCeEEEEEcC-CceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeE
Q 008041          265 LYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ  343 (579)
Q Consensus       265 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  343 (579)
                      +++++++.||.+++|.++ +++.+..+......+.....++++++    .++.++.+..  .....++...-.. . ...
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~~-~-~~~  395 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIKG-G-KTK  395 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETTC-C-CCE
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcCC-C-Cce
Confidence            999999999999999876 45444443332211111112567766    4444433210  0012344443211 1 122


Q ss_pred             EEecCCCCcEEEeecCCcceeeccccce---ecccceeeee
Q 008041          344 KILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQN  381 (579)
Q Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~~  381 (579)
                      .+ .|...+..++|||||++++.+++.+   ..+++|++.+
T Consensus       396 ~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          396 DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            22 3666789999999999884444433   4588998753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=8.1e-21  Score=187.38  Aligned_cols=266  Identities=12%  Similarity=0.040  Sum_probs=193.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCcc--ccccccccccccccccccccceEEeeecccccccccCCcEE-EEEEC
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG   94 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~   94 (579)
                      ++|++++.++.|.+||..+++....+.....  .+.                  .+.|.+.         +..+ +++..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~~l~v~~~~   54 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM------------------VPMVAPG---------GRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC------------------CEEECTT---------SSEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc------------------ceEEcCC---------CCEEEEEeCC
Confidence            4789999999999999999998877652221  122                  3344332         4444 55556


Q ss_pred             CCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCceeeEeecC
Q 008041           95 GGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                      ++.|.+||+.+++.+..+..++    ...+.+++|+|+|+++++++            .++.|.+||+.+++.+..+.. 
T Consensus        55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-  133 (337)
T 1pby_B           55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence            7899999999998876654333    12577899999999988886            579999999999888877765 


Q ss_pred             CCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----------------
Q 008041          159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----------------  222 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~----------------  222 (579)
                      ...+.+++|+|+|++++++++.|++||+.+++.+..+..+... ..+.|+|++++++.++..++                
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence            4567889999999999988999999999999988777654311 12378999987766553333                


Q ss_pred             -------eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041          223 -------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       223 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                             .|.+||+.+++..    .............+.++     |+|++++++  ++.|++||+.+++.+....    
T Consensus       213 ~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----  277 (337)
T 1pby_B          213 DPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRVP----  277 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred             cccccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence                   4689999887632    12222233344557777     999999888  7999999987765432110    


Q ss_pred             EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                                                                         . ...+.+++|+|||+++ ++++.++.++
T Consensus       278 ---------------------------------------------------~-~~~~~~~~~s~dg~~l-~~~~~~~~i~  304 (337)
T 1pby_B          278 ---------------------------------------------------L-PHSYYSVNVSTDGSTV-WLGGALGDLA  304 (337)
T ss_dssp             ---------------------------------------------------C-SSCCCEEEECTTSCEE-EEESBSSEEE
T ss_pred             ---------------------------------------------------C-CCceeeEEECCCCCEE-EEEcCCCcEE
Confidence                                                               0 1135678999999988 6667799999


Q ss_pred             ceeee
Q 008041          376 GRYVQ  380 (579)
Q Consensus       376 ~w~~~  380 (579)
                      +|++.
T Consensus       305 v~d~~  309 (337)
T 1pby_B          305 AYDAE  309 (337)
T ss_dssp             EEETT
T ss_pred             EEECc
Confidence            99985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3.2e-20  Score=183.55  Aligned_cols=272  Identities=14%  Similarity=0.152  Sum_probs=178.0

Q ss_pred             EEEEEeCCCcEEEEECC-CCe--EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           19 YFAICSGDARIKIWDTL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+++++.|+.|++||+. ++.  ....+. +..                  ...++.|.+.         +..+++++.+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~spd---------g~~l~~~~~~   58 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG------------------QVQPMVVSPD---------KRYLYVGVRP   58 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS------------------CCCCEEECTT---------SSEEEEEETT
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC------------------CCceEEECCC---------CCEEEEeecC
Confidence            34444679999999985 343  222221 222                  2334555443         6667887776


Q ss_pred             -CeEEEEEcc--CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCC---CCceeeEeecCCCCeeEEE
Q 008041           96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        96 -g~i~iwd~~--~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~---~~~~~~~~~~~~~~v~~l~  166 (579)
                       +.|.+|++.  +++.  +..+ ..+ ..+.+++|+|+|+++++++. ++.|++||+.   .++....+..+ ..+.+++
T Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~  135 (343)
T 1ri6_A           59 EFRVLAYRIAPDDGALTFAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSAN  135 (343)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCE
T ss_pred             CCeEEEEEecCCCCceeecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEE
Confidence             899999998  5553  2233 223 37899999999998877664 8899999994   33444455433 4688999


Q ss_pred             EccCCCEEEEEC---CeEEEEECCC-CeeeE----Eeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC--Cccc
Q 008041          167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ  235 (579)
Q Consensus       167 ~~p~g~~l~~~~---~~i~vwd~~~-~~~~~----~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~--~~~~  235 (579)
                      |+|+|+.+++++   +.|++||+.+ ++...    .+.. ....+..++|+|+++++++++..++.|.+|++..  ++..
T Consensus       136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            999999777765   8999999987 64432    2332 3357889999999998877765789999999964  3221


Q ss_pred             cceeeeeeecC---ceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC--ceeecccCCeeEEeeeccCCcccccc
Q 008041          236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN--IEELRNTKATKILSSSEDVNSKSQKS  309 (579)
Q Consensus       236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (579)
                      ...........   ......+.|+     |+|++|+++. .++.|.+||+..  ++..        .             
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~~~~--------~-------------  269 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLS--------K-------------  269 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEE--------E-------------
T ss_pred             EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCCceE--------E-------------
Confidence            00011111111   1233456777     9998887655 689999999762  1100        0             


Q ss_pred             cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       310 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                      ...+..+. .+..++|+|||++|.+++..++.+.+|++.
T Consensus       270 --------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          270 --------------------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             --------------------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             --------------------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence                                            00111122 267789999999884555578999999774

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.1e-20  Score=182.42  Aligned_cols=221  Identities=11%  Similarity=0.069  Sum_probs=156.3

Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008041           23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA  102 (579)
Q Consensus        23 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd  102 (579)
                      ++.|++|++||+.+++..... .+...+.                  ++.|.|.         +.++++++ ++.|++||
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~-~~~~~v~------------------~~~~spd---------g~~l~~~~-~~~i~~~d   68 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVW-QTPELFE------------------APNWSPD---------GKYLLLNS-EGLLYRLS   68 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEE-EESSCCE------------------EEEECTT---------SSEEEEEE-TTEEEEEE
T ss_pred             CCcceeEEEEeCCCCceeeec-cCCcceE------------------eeEECCC---------CCEEEEEc-CCeEEEEe
Confidence            456899999999998876433 3333333                  4445442         66777765 88999999


Q ss_pred             ccC-CeEEEEecCCC-CCCEEEEEEccCCCEEEEEe--CCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEE-
Q 008041          103 VSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA-  175 (579)
Q Consensus       103 ~~~-~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~--~d~~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~-  175 (579)
                      +.+ ++..... ..| ...+.+++|+|+|+++++++  .++.  |..|++.+++ ...+..+ ..+.+++|+|+|+.++ 
T Consensus        69 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           69 LAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             SSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred             CCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence            999 7765433 344 47889999999999999998  3344  4445555554 3444433 3589999999999887 


Q ss_pred             EEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041          176 TAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       176 ~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (579)
                      ++.  +.+++|+++. +.....+..|...+.++.|+|+++++++++..++.+++|++......    ...+..+...+..
T Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~  221 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----VERITDSAYGDWF  221 (297)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----EEECCCCSEEEEE
T ss_pred             EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC----cEEEecCCcccCC
Confidence            443  7788887532 23445667788899999999999988877756889999998632211    2233444455666


Q ss_pred             EEecCCcccCCCcEEEEEEcC-----------CeEEEEEcCCc
Q 008041          253 RCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNI  284 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~  284 (579)
                      ..|+     |+|++|++++.+           +.|++||+.++
T Consensus       222 ~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          222 PHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             EEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             eEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            7787     999999988876           46888887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=5.5e-20  Score=181.25  Aligned_cols=238  Identities=9%  Similarity=0.048  Sum_probs=168.6

Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg~~lasg~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++|+|||+++++++. ++.|.+||..+++. ...+..+..+...                  +.|.+.         +.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~s~d---------g~   96 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD------------------VDITPD---------DQ   96 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC------------------EEECTT---------SS
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc------------------eEECCC---------CC
Confidence            5699999997777665 88999999999887 5555433322222                  334332         66


Q ss_pred             EEEEEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEeCCCCcee----eEeecC
Q 008041           88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLL----GKFRAS  158 (579)
Q Consensus        88 ~l~~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~-v~iwd~~~~~~~----~~~~~~  158 (579)
                      +++++..++   .|.+||+.+++.+..+.  +...+.+++|+|+|++++++ ..++. |.+|++.....+    ......
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  174 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG  174 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence            677555553   89999999999876653  34567999999999866555 55588 999998754332    112233


Q ss_pred             CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ...+.+++|+|+|+++++++   +.|++||+.+++.   +..+..+ ..+..++|+|+|+++++++..++.|.+||+.++
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            45689999999999665544   7999999999888   7777644 567889999999988777656788999999887


Q ss_pred             ccccceeeeeeecC----ce---eEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCce
Q 008041          233 KKQSASCVLAMEHP----AV---FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  285 (579)
                      +..   .+......    ..   ....+.|+     |+|++|++++. ++.|.+||+.+..
T Consensus       254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence            642   11111111    11   11235676     99999877765 6699999987643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=1.3e-19  Score=179.17  Aligned_cols=239  Identities=11%  Similarity=0.126  Sum_probs=163.4

Q ss_pred             EEEEccCCCEEEEEeCC-CcEEEEECC--CCeEE--EEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           10 LTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fspdg~~lasg~~d-g~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +++|+|+|++|++++.+ +.|.+|++.  +++..  ..+..+.                   ....+.|.+.        
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~d--------   94 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-------------------SLTHISTDHQ--------   94 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-------------------CCSEEEECTT--------
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-------------------CCcEEEEcCC--------
Confidence            45999999999998876 999999997  55533  3332211                   2334555443        


Q ss_pred             CCcEEEEEEC-CCeEEEEEcc---CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cceee----E
Q 008041           85 GSSLLVLGTG-GGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG----K  154 (579)
Q Consensus        85 ~~~~l~~~~~-~g~i~iwd~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~-~~~~~----~  154 (579)
                       +..+++++. ++.|.+||+.   +.+....+ . ....+.+++|+|+|+++++++ .++.|++||+.+ ++...    .
T Consensus        95 -g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  171 (343)
T 1ri6_A           95 -GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  171 (343)
T ss_dssp             -SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             -CCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence             565666554 7889999994   33444333 3 334689999999999888887 899999999987 65432    2


Q ss_pred             eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEee----cC--CCCEEEEEEecCCCEEEEEecC
Q 008041          155 FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       155 ~~~-~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~--~~~--~~~~~----~h--~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      +.. ....+.+++|+|+|+++++++   +.|.+|++..  ++.  ...+.    ++  ...+..++|+|+|+++++++..
T Consensus       172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence            232 234788999999999765543   8999999953  432  22222    11  2356789999999988866657


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEc--CCce
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG--QNIE  285 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~  285 (579)
                      ++.|.+|++...... ...+........ ...+.|+     |+|++|++++ .++.|.+|++  .+++
T Consensus       252 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          252 ASLITVFSVSEDGSV-LSKEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             TTEEEEEEECTTSCC-EEEEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCEEEEEEEcCCCCc-eEEeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            899999999842111 112333333333 5567777     9999998888 5899999954  4553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=1.7e-20  Score=213.42  Aligned_cols=267  Identities=11%  Similarity=-0.025  Sum_probs=185.8

Q ss_pred             cEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--------
Q 008041           87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--------  157 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------  157 (579)
                      .++++++.+|.+.+|.+.. +.....+ ..|. .+...+|+|||++++++ .++.|++||+... .+..+..        
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~  290 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED  290 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred             EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence            4556667778888887654 3233233 3344 46677999999998887 5899999998443 3335544        


Q ss_pred             ---CCCCeeEEEEc-cCCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-CEEEEEEecCCCEEEEEecCCCeEE-EEEcC
Q 008041          158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD  230 (579)
Q Consensus       158 ---~~~~v~~l~~~-p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~~d~~i~-vwd~~  230 (579)
                         |...+.+++|+ |||+.++++. +.|++|+..+++.. .+..|.. .+..+.|+ ||+.+++++ .++.+. +|++.
T Consensus       291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~  367 (1045)
T 1k32_A          291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR  367 (1045)
T ss_dssp             EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred             ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence               23468999999 9999998887 99999999887644 4667777 89999999 999999887 577888 89988


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccccc
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      .++..      .+..+...+..+.|+     |||++|++++.++.|++||+.+++...........+... .++|+++  
T Consensus       368 ~~~~~------~l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~-~~SpDG~--  433 (1045)
T 1k32_A          368 TGKAE------KFEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF-TISDNSR--  433 (1045)
T ss_dssp             TCCEE------ECCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE-EECTTSC--
T ss_pred             CCCce------EecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce-EECCCCC--
Confidence            76532      222334455677787     999999999999999999999887654332211111111 2688888  


Q ss_pred             chhhhhccccc--e-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          311 TAAIFAAKLQD--I-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       311 ~~~i~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                        .++.++.++  . ....+..+.+.+-. .. ....+..|...+..++|+|||++| +.++.++..+.|+.
T Consensus       434 --~la~~~~~~~~~~~~~~~~~i~l~d~~-~g-~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          434 --FIAYGFPLKHGETDGYVMQAIHVYDME-GR-KIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR  500 (1045)
T ss_dssp             --EEEEEEEECSSTTCSCCEEEEEEEETT-TT-EEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred             --eEEEEecCccccccCCCCCeEEEEECC-CC-cEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence              666655432  0 00112344444322 12 245666788788999999999999 77777777777765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=6e-20  Score=208.98  Aligned_cols=242  Identities=12%  Similarity=0.022  Sum_probs=181.7

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEee-ecccccccccCCcE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~   88 (579)
                      +.+|||||++|+++. ++.|.+||....... .+..+..... ..+      ......+..+.|. |.         +..
T Consensus       249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~-~~~------~~~~~~v~~~~~S~pd---------G~~  310 (1045)
T 1k32_A          249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESP-EDR------IISIPSKFAEDFSPLD---------GDL  310 (1045)
T ss_dssp             EEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBC-CSE------EEECGGGGEEEEEECG---------GGC
T ss_pred             eeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccccc-ccc------cccccccceeeecCCC---------CCE
Confidence            459999999999885 899999999554443 4443211000 000      0012245677787 54         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCC-CEEEEEEccCCCEEEEEeCCCcEE-EEeCCCCceeeEeecCCCCeeEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +++++ ++.|++|+..+++... + ..|.. .+.+++|+ ||+.+++++.++.+. +||+..++... +..|...+.+++
T Consensus       311 la~~~-~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~  385 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMG  385 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEE
T ss_pred             EEEEE-cCEEEEEcCCCCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeE
Confidence            67766 8899999999887643 3 46777 89999999 999999999888898 99988776544 447778999999


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC---------CeEEEEEcCCCccc
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ  235 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d---------~~i~vwd~~~~~~~  235 (579)
                      |+|||+.|++++  +.|++||+.+++....+.+|...+.+++|+|||++|++++..+         +.|++||+.+++. 
T Consensus       386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-  464 (1045)
T 1k32_A          386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-  464 (1045)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-
T ss_pred             ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-
Confidence            999999999887  7999999999988877778999999999999999998876322         4899999988652 


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                           ..+..+........|+     |||++|++++.++...+|+.....
T Consensus       465 -----~~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          465 -----FAATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             -----EECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSC
T ss_pred             -----EEeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhccc
Confidence                 2233333444556777     999999999998888888765443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=7.1e-20  Score=176.70  Aligned_cols=231  Identities=11%  Similarity=0.062  Sum_probs=164.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.|  .+++|+|||++|++++ ++.|.+||+.+ ++.......+.                 ...+.++.|.+.      
T Consensus        42 ~~v--~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spd------   95 (297)
T 2ojh_A           42 ELF--EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-----------------TICNNDHGISPD------   95 (297)
T ss_dssp             SCC--EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-----------------CCBCSCCEECTT------
T ss_pred             cce--EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-----------------cccccceEECCC------
Confidence            456  4559999999999987 78999999998 77665443321                 123344555543      


Q ss_pred             ccCCcEEEEEEC--CCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCC-CCceeeEee
Q 008041           83 KLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPL-TGSLLGKFR  156 (579)
Q Consensus        83 ~~~~~~l~~~~~--~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~-~~~~~~~~~  156 (579)
                         +..+++++.  ++.  |..|+..+++.. .+ . +...+.+++|+|++++++ +++.|+.+++|++. .+.....+.
T Consensus        96 ---g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  169 (297)
T 2ojh_A           96 ---GALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT  169 (297)
T ss_dssp             ---SSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             ---CCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence               677888883  344  555555555532 33 2 233599999999999876 77789999999853 233445566


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------C
Q 008041          157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------R  222 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d----------~  222 (579)
                      .+...+.+++|+|+|+.++.++   +.+++|++. .+..+..+..|...+..+.|+|+|++|++++..+          +
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence            6778999999999999877654   688888876 5556777888888899999999999998877421          5


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                      .|++||+.+++..   .+.....+...+..+.|+     |++++|++++.+.
T Consensus       250 ~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~  293 (297)
T 2ojh_A          250 RVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred             EEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence            6999999887643   333333333344556666     9999998887753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=9.9e-20  Score=180.59  Aligned_cols=238  Identities=11%  Similarity=0.093  Sum_probs=174.5

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-   89 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-   89 (579)
                      +++++++.++++++.+++|.+||..+++....+..+..                 .....+.|.+.         +..+ 
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~d---------g~~~~   58 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPD---------NRTAY   58 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTT---------SSEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCC---------CCEEE
Confidence            37899999999999999999999999998877753220                 01223344332         4544 


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCC-----CCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCce-
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL-  151 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~-  151 (579)
                      +++..++.|.+||+.+++....+...+     ...+.+++|+|+|+++++++.+            +.|.+||+.+++. 
T Consensus        59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            445567899999999998876654333     2237889999999999998865            8999999988543 


Q ss_pred             --eeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCC------------------------------
Q 008041          152 --LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP------------------------------  199 (579)
Q Consensus       152 --~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~------------------------------  199 (579)
                        +..+.. ...+.+++|+|+|+ ++++++.|++||..+++.+..+..+.                              
T Consensus       139 ~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          139 KPVRTFPM-PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             CCSEEEEC-CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             ceeeeccC-CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence              334443 34688999999999 66677779999999988776664331                              


Q ss_pred             --------------------------------------CCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          200 --------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       200 --------------------------------------~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                                                            ..+..++|+| ++++++++   ++.|.+||+.+++..     
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~-----  288 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI-----  288 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE-----
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE-----
Confidence                                                  1345667789 99988876   679999999887633     


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ..+..... ...+.|+     |+|++|++++.++.|++||..+++.+..+
T Consensus       289 ~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          289 KAANLDHT-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEEECSSC-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCC-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence            22222222 3456676     99999988888999999999998876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=8.7e-19  Score=173.94  Aligned_cols=242  Identities=11%  Similarity=0.111  Sum_probs=160.3

Q ss_pred             EEEEccCCCEEEEEeC---CCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           10 LTSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fspdg~~lasg~~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++|||||+ |++++.   ++.|.+||+.++..  +..+..+...+                  ..+.|.+.        
T Consensus        44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p------------------~~~a~spd--------   96 (347)
T 3hfq_A           44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP------------------AYVAVDEA--------   96 (347)
T ss_dssp             CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC------------------SEEEEETT--------
T ss_pred             eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC------------------EEEEECCC--------
Confidence            359999999 555543   68999999987764  22222222222                  33444432        


Q ss_pred             CCcEEEEEE-CCCeEEEEEcc-CCe--EEEEecC-C-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCce
Q 008041           85 GSSLLVLGT-GGGDVLALAVS-AGQ--LKWRLSD-C-------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSL  151 (579)
Q Consensus        85 ~~~~l~~~~-~~g~i~iwd~~-~~~--~~~~~~~-~-------h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~  151 (579)
                       +.++++++ .++.|.+|++. .+.  .+..+.. +       +...+.+++|+|+|+.+++...++.|++||+. +++.
T Consensus        97 -g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A           97 -RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             -TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred             -CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence             67677777 67899999996 333  2222211 1       22358999999999966666678899999998 5543


Q ss_pred             ee--EeecCC-CCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEeecCC------CCEEEEEEecCCCEEE
Q 008041          152 LG--KFRAST-KGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVL  215 (579)
Q Consensus       152 ~~--~~~~~~-~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~--~~~--~~~~~~h~------~~v~~l~~s~~~~~l~  215 (579)
                      ..  .+..+. ..+..++|+|||+++++++   +.|.+|++..  ++.  +..+....      ..+..++|+|||++|+
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence            32  223322 3678999999999776654   7999999874  543  33333332      3488899999999886


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEE--EcCCcee
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW--YGQNIEE  286 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~  286 (579)
                      +++..++.|.+|++.....  ...+............+.|+     |||++|++++. ++.|.+|  |.++++.
T Consensus       256 v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGH--LTLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEETTTEEEEEEECGGGC--EEEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEeCCCCEEEEEEECCCCc--EEEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            6655789999999974321  11333333333344567777     99999988876 4899999  4555654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=9e-20  Score=200.36  Aligned_cols=281  Identities=7%  Similarity=-0.005  Sum_probs=193.9

Q ss_pred             ccceEEeeecccccccccCCcEEEEEEC-CC-----eEEEEEccCCeEEEEecCCCC-----------------------
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP-----------------------  117 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g-----~i~iwd~~~~~~~~~~~~~h~-----------------------  117 (579)
                      .+..+.|.+.         +..|++++. +|     .|++||+.+++....+ ..+.                       
T Consensus        38 ~~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           38 TLMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------C
T ss_pred             CCCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhcc
Confidence            3556677664         778888888 88     8999999999875444 2222                       


Q ss_pred             -CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008041          118 -GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       118 -~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~  193 (579)
                       ..|.+++|+|||++|++++. +.|++||+.++.  ....+..+...+.+++|+|||+.|+.++ +.|++||+.+++...
T Consensus       108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence             23789999999999999876 999999998873  4455667778899999999999999888 899999999987665


Q ss_pred             EeecCCCC----------------EEEEEEecCCCEEEEEecCCC---------------------------------eE
Q 008041          194 KFSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YI  224 (579)
Q Consensus       194 ~~~~h~~~----------------v~~l~~s~~~~~l~s~~~~d~---------------------------------~i  224 (579)
                      ....+...                +..+.|+|||++|++++. |+                                 .|
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            44444432                477999999999988863 44                                 78


Q ss_pred             EEEEcCC-CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-----CCeEEEEEcCCceeecccCCeeEE--
Q 008041          225 ALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL--  296 (579)
Q Consensus       225 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--  296 (579)
                      .+||+.+ ++..   .+.....+...+..+.|      |||++|++++.     ++.|++||..+++...........  
T Consensus       266 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          266 GVISPAEQAQTQ---WIDLGKEQDIYLARVNW------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEECSSTTCCCE---EECCCSCSSEEEEEEEE------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCceE---EecCCCCcceEEEEEEe------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            8899887 6532   11111112233333333      58898887764     568999999988754332211100  


Q ss_pred             -eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeecccccee--
Q 008041          297 -SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK--  372 (579)
Q Consensus       297 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~--  372 (579)
                       ......|+++++    .++++..++.     ..++...-.  .. ...+..|...+..+ .|||||+.+.++++.++  
T Consensus       337 ~~~~~~~~spdg~----~~~~~~~~g~-----~~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~  404 (741)
T 2ecf_A          337 PLHNSLRFLDDGS----ILWSSERTGF-----QHLYRIDSK--GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR  404 (741)
T ss_dssp             CCCSCCEECTTSC----EEEEECTTSS-----CEEEEECSS--SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred             CcCCceEECCCCe----EEEEecCCCc-----cEEEEEcCC--CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence             001223677766    5666666542     233433311  12 45667787778887 59999998756676666  


Q ss_pred             cccceeee
Q 008041          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      .+++|.+.
T Consensus       405 ~~~l~~~~  412 (741)
T 2ecf_A          405 ESQIYAVP  412 (741)
T ss_dssp             CBEEEEEE
T ss_pred             eEEEEEEE
Confidence            78899874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=4.4e-18  Score=168.82  Aligned_cols=233  Identities=12%  Similarity=0.081  Sum_probs=154.6

Q ss_pred             CcEEEEEEC---CCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCc--eeeEee
Q 008041           86 SSLLVLGTG---GGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL-TGS--LLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~---~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~-~~~--~~~~~~  156 (579)
                      +. +++++.   ++.|++|++.+++.  +... ..+...+..++|+|+|+++++++ .++.|.+||+. ++.  .+..+.
T Consensus        51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~  128 (347)
T 3hfq_A           51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ  128 (347)
T ss_dssp             CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence            55 555444   57899999988764  2222 34667789999999999988887 78999999985 333  233332


Q ss_pred             cC---------CCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCeee--EEeecCC-CCEEEEEEecCCCEEEEEecCC
Q 008041          157 AS---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGHP-GAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       157 ~~---------~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-~~~~~--~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                      ..         ...+.+++|+|+|+++++..  +.|++|++. +++..  ..+..+. ..+..++|+|||+++++++..+
T Consensus       129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  208 (347)
T 3hfq_A          129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS  208 (347)
T ss_dssp             CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence            21         12488999999999555554  799999998 55432  2223222 3678899999999888776678


Q ss_pred             CeEEEEEcCC--CccccceeeeeeecCc------eeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeecccCC
Q 008041          222 RYIALWRTDG--VKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       222 ~~i~vwd~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      +.|.+|++..  ++..   .........      .....+.|+     |||++|+++ ..++.|.+|++.....+.    
T Consensus       209 ~~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~----  276 (347)
T 3hfq_A          209 SQIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT----  276 (347)
T ss_dssp             TEEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred             CEEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence            9999999875  3211   111221111      335567777     999988554 558999999975211100    


Q ss_pred             eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008041          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~  372 (579)
                         .                                             ...+..+...+..++|+|||++|.+++..++
T Consensus       277 ---~---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          277 ---L---------------------------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             ---E---------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             ---E---------------------------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence               0                                             0011123335678899999998845555568


Q ss_pred             cccceeee
Q 008041          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      .+.+|++.
T Consensus       309 ~v~v~~~d  316 (347)
T 3hfq_A          309 NATLYARD  316 (347)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEe
Confidence            89999763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=1.3e-19  Score=184.93  Aligned_cols=209  Identities=12%  Similarity=0.042  Sum_probs=151.7

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +++++++.++++++.|+ ++||+............+.  .....+.+. ..-+....+.++.|.+.         +.+|+
T Consensus        42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~v~~l~~spd---------g~~la  108 (434)
T 2oit_A           42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP--NKIVDKVQG-LLVPMKFPIHHLALSCD---------NLTLS  108 (434)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT--TCEEECCCC-EEECCSSCEEEEEECTT---------SCEEE
T ss_pred             EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc--ccccccCcc-ccccCCCcccEEEEcCC---------CCEEE
Confidence            39999999999999888 8998764221100000000  000000000 00112345778888775         56677


Q ss_pred             ----EEECCCeEEEEEccCC--------eE--EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           91 ----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        91 ----~~~~~g~i~iwd~~~~--------~~--~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                          +|+.|+.|++||+.++        +.  ......+|...|++++|+|+ +.+|++++.||+|++||++++..+...
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             EEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence                6777899999999765        11  12445679999999999997 789999999999999999998777777


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-------CCEEEEEEecCCCEEEEEecCCC----
Q 008041          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVGER----  222 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~s~~~~d~----  222 (579)
                      .+|...|++++|+|+|++|++|+  |.|++||.+ ++....+..|.       ..|.++.|++++.++++.+..||    
T Consensus       189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            77888999999999999999998  899999998 55555555442       37999999999988876554554    


Q ss_pred             --eEEEEEcCCCc
Q 008041          223 --YIALWRTDGVK  233 (579)
Q Consensus       223 --~i~vwd~~~~~  233 (579)
                        .+++|++...+
T Consensus       268 ~~~v~i~~l~~~~  280 (434)
T 2oit_A          268 SPDVVMALLPKKE  280 (434)
T ss_dssp             CCEEEEEECCCTT
T ss_pred             CCceEEEEeccCC
Confidence              38999998753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=7.8e-19  Score=173.10  Aligned_cols=240  Identities=10%  Similarity=0.030  Sum_probs=173.8

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|||++++ +++.++.|.+||..+++....+.......             .......+.|.+.         +..
T Consensus        38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d---------g~~   95 (337)
T 1pby_B           38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD---------GKT   95 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT---------SSE
T ss_pred             ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC---------CCE
Confidence            449999998765 45567899999999999877665211000             0011234444432         566


Q ss_pred             EEEEE------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           89 LVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                      ++++.            .++.|.+||+.+++.+..+..  ...+.+++|+|+|++++++  ++.|++||+.+++....+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~  171 (337)
T 1pby_B           96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred             EEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence            77775            578999999999988766532  4567889999999988887  6889999999998887776


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC---C-----------------------eEEEEECCCCeee-EEeecCCCCEEEEEEec
Q 008041          157 ASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFMTFSD  209 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~---~-----------------------~i~vwd~~~~~~~-~~~~~h~~~v~~l~~s~  209 (579)
                      .+.. ...+.|+|+|+.++.++   +                       .|.+||+.+++.. ..+..+...+.+++|+|
T Consensus       172 ~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~  250 (337)
T 1pby_B          172 IQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP  250 (337)
T ss_dssp             STTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred             cccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC
Confidence            5441 11237899998776544   2                       4789999998764 33456667788999999


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                      +|++++++   ++.|.+||+.+++..     ..+.... ....+.|+     |+|++|++++.++.|++||+.+++.+..
T Consensus       251 dg~~l~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          251 AKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             TSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEe---CCeEEEEECCCCcCc-----ceecCCC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence            99998876   589999999887533     2222222 23456676     9999999998999999999999877654


Q ss_pred             c
Q 008041          290 T  290 (579)
Q Consensus       290 ~  290 (579)
                      +
T Consensus       317 ~  317 (337)
T 1pby_B          317 V  317 (337)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=4.1e-18  Score=169.23  Aligned_cols=233  Identities=9%  Similarity=0.091  Sum_probs=172.6

Q ss_pred             EEEEccCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~lasg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+|++++.+ ..++.|.+||..+++....+..+......         .........+.|.+.         +..
T Consensus        93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~d---------g~~  154 (353)
T 3vgz_A           93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE---------EVRPLQPRELVADDA---------TNT  154 (353)
T ss_dssp             SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS---------SCCCCEEEEEEEETT---------TTE
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc---------ccCCCCCceEEECCC---------CCE
Confidence            34999999966655 45799999999999988777543211000         000011234555543         555


Q ss_pred             EEEEE--CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCe
Q 008041           89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI  162 (579)
Q Consensus        89 l~~~~--~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v  162 (579)
                      ++++.  .++.|.+||+.+++.+..+. .+...+.+++|+|+|+++++++.++.|.+||+.+++....+..    +...+
T Consensus       155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  233 (353)
T 3vgz_A          155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF  233 (353)
T ss_dssp             EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred             EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence            66665  47889999999999886663 3555688999999999999999999999999999998887764    44568


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+++|+|+|+.+++++   +.|.+||..+++.+..+..+.  ...+.|+|+|+++++++..++.|.+||..+++..    
T Consensus       234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----  307 (353)
T 3vgz_A          234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV----  307 (353)
T ss_dssp             EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence            8899999999777665   799999999999888776543  2569999999987777657899999999887633    


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                       ..+.... ....+.|+     |+|++|+++..++
T Consensus       308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~  335 (353)
T 3vgz_A          308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK  335 (353)
T ss_dssp             -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred             -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence             2333333 34566777     9999888877654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=6.6e-20  Score=200.68  Aligned_cols=328  Identities=10%  Similarity=0.031  Sum_probs=195.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|+|||++++++ .|+.|++||+.+++....+..+...               ...+.++.|.|.         ++.|
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpD---------g~~l   74 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPD---------RQFV   74 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTT---------SSEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCC---------CCeE
Confidence            45999999766654 6999999999999987766533221               011334455443         7778


Q ss_pred             EEEEC---------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCC
Q 008041           90 VLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST  159 (579)
Q Consensus        90 ~~~~~---------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~  159 (579)
                      ++++.         ++.|++||+.+++.+...  .....+.+++|+|||+.|+++. |+.|++||+.+++..... .++.
T Consensus        75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~  151 (719)
T 1z68_A           75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE  151 (719)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred             EEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence            88776         688999999999873111  1235688999999999999885 789999999888765432 2222


Q ss_pred             CCe-----------------eEEEEccCCCEEEEEC-C-----------------------------------eEEEEEC
Q 008041          160 KGI-----------------SCMAVSSDGKMLATAA-G-----------------------------------QLKTFNC  186 (579)
Q Consensus       160 ~~v-----------------~~l~~~p~g~~l~~~~-~-----------------------------------~i~vwd~  186 (579)
                      ..+                 .+++|+|||+.|++++ .                                   .|++||+
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence            222                 4899999999999875 1                                   7889999


Q ss_pred             CCCeee--------EEeecCCCCEEEEEEecCCCEEEEEecC-C--CeEEEEE----cCCCccccceeeee--eecCcee
Q 008041          187 SDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA--MEHPAVF  249 (579)
Q Consensus       187 ~~~~~~--------~~~~~h~~~v~~l~~s~~~~~l~s~~~~-d--~~i~vwd----~~~~~~~~~~~~~~--~~~~~~~  249 (579)
                      .+++..        ..+.+|...+..++|+||++.+++.... +  ..|.+||    +.+++...   +..  ...+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~---~~~~~~~~~~~~  308 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK---TQEHIEESRTGW  308 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG---GGEEEEECSSSC
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE---EEecccccCCce
Confidence            988653        1234688889999999998776664321 2  2488899    66665331   111  0122222


Q ss_pred             EE-----eEEecCCcccCCCcEEEE--EEcCC--eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041          250 MD-----CRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       250 ~~-----~~~~~~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      +.     ...|+     |||+.++.  ...+|  .|++||+.+++.. .+......+.... +. +++    .|+..+.+
T Consensus       309 ~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~-~~-d~~----~i~~~~~~  376 (719)
T 1z68_A          309 AGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIF-RV-TQD----SLFYSSNE  376 (719)
T ss_dssp             SSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEE-EE-CSS----EEEEEESC
T ss_pred             EccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEE-EE-eCC----EEEEEEec
Confidence            22     45676     99986654  44555  5777777665422 1211111111111 12 333    33333222


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEe----cCCCCcEEEeecCCcceeeccccce--ecccceeee
Q 008041          321 DIVKPASVHTFVAYGLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYVQ  380 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d--~~~~~w~~~  380 (579)
                      +........++......-....+.+.    +|...+..+.|||||++++++++.+  ..+++|++.
T Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR  442 (719)
T ss_dssp             GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred             CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence            00000122333332100000112222    2555678899999999885555544  345667663

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1e-17  Score=167.24  Aligned_cols=239  Identities=14%  Similarity=0.124  Sum_probs=157.8

Q ss_pred             EEEccCCCEEEEEeCC----CcEEEEECCC--CeEEEE--eccCccccccccccccccccccccccceEEeeeccccccc
Q 008041           11 TSFSPALDYFAICSGD----ARIKIWDTLK--GQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        11 ~~fspdg~~lasg~~d----g~i~vwd~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++|||||++|++++.+    +.|.+|++..  |+....  ...+.                  .....+.+   +     
T Consensus        55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~------------------~~p~~~~~---d-----  108 (361)
T 3scy_A           55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG------------------ADPCYLTT---N-----  108 (361)
T ss_dssp             EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS------------------SCEEEEEE---C-----
T ss_pred             EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC------------------CCcEEEEE---C-----
Confidence            4999999999999875    7999998765  544322  11111                  11122222   1     


Q ss_pred             ccCCcEEEEEE-CCCeEEEEEccCCeEEEEe-----c--------CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008041           83 KLGSSLLVLGT-GGGDVLALAVSAGQLKWRL-----S--------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL  147 (579)
Q Consensus        83 ~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~-----~--------~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~  147 (579)
                         +..+++++ .++.|.+|++.....+...     .        ..+...+.+++|+|+|+++++++ .++.|++|++.
T Consensus       109 ---g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          109 ---GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             ---SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ---CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence               55566665 6788999999754322111     0        11233468999999999776655 58899999887


Q ss_pred             CCce------e------eE-eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEee---cCCCCEEEEE
Q 008041          148 TGSL------L------GK-FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFMT  206 (579)
Q Consensus       148 ~~~~------~------~~-~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~--~~~~~---~h~~~v~~l~  206 (579)
                      ....      +      .. ...+...+.+++|+|||+++++++   +.|.+|++.+++.  +..+.   .+......++
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence            5431      1      11 222345788999999999776655   7999999987754  33332   3335578999


Q ss_pred             EecCCCEEEEEecC-CCeEEEEEcCC--CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEE--
Q 008041          207 FSDNGKYVLSSAVG-ERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY--  280 (579)
Q Consensus       207 ~s~~~~~l~s~~~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd--  280 (579)
                      |+|||++|+++... ++.|.+|++..  ++..   .+..... ......+.|+     |+|++|++++ .++.|.+|+  
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEEE
Confidence            99999999877755 58999999963  3321   2223333 3344566777     9999999888 578999965  


Q ss_pred             cCCceee
Q 008041          281 GQNIEEL  287 (579)
Q Consensus       281 ~~~~~~~  287 (579)
                      ..+++..
T Consensus       337 ~~~g~~~  343 (361)
T 3scy_A          337 QATGLLT  343 (361)
T ss_dssp             TTTCCEE
T ss_pred             CCCCcEe
Confidence            4466543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.1e-18  Score=186.19  Aligned_cols=233  Identities=12%  Similarity=0.068  Sum_probs=160.0

Q ss_pred             CcccceEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+|  .+++|+|||++||+++. ||+++||++.++...+ +..+. ..+....                  |.|      
T Consensus        22 ~~~--~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~------------------~sp------   74 (582)
T 3o4h_A           22 VEK--YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPH------------------YGV------   74 (582)
T ss_dssp             SCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEEC------------------TTC------
T ss_pred             cch--heeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eeccccccccccc------------------CCC------
Confidence            467  55699999999999887 9999999997776654 33222 2333333                  332      


Q ss_pred             cccCCcEEEEEEC---CCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE
Q 008041           82 RKLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~---~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                          ..++++++.   +....+|.+..   +... .+..  ...+...+|+|+|+. +++.+.++.+.+||+.+++....
T Consensus        75 ----d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l  147 (582)
T 3o4h_A           75 ----GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL  147 (582)
T ss_dssp             ----SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             ----CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence                234555554   34455555433   2222 3322  223456688888864 33444455566999998876655


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEE
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL  226 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~v  226 (579)
                      ...+.   .+++|+|||+.+++++      +.|++||+.+++.. .+..|...+..++|+|||++|+++. .++  .|++
T Consensus       148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~  222 (582)
T 3o4h_A          148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVT  222 (582)
T ss_dssp             EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEE
T ss_pred             ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEE
Confidence            54333   8899999999999765      46999999888754 6788889999999999999999655 688  8999


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEE--------ecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRC--------IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      ||+.+++..      .+..+...+....        |+     |||..+++++.||++++|++  ++...
T Consensus       223 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          223 VDPRDGSVE------DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             ECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             EcCCCCcEE------EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence            999887532      2222222222222        66     99988999999999999999  66554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=3e-18  Score=187.18  Aligned_cols=254  Identities=12%  Similarity=0.092  Sum_probs=175.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +.+..+  +|||||++||++ .|+.|++||+.+     ++.......+...+..   ..+....+ .....++.|.|.  
T Consensus       121 ~~~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~---g~~~~~ee-~~~~~~~~~SpD--  191 (706)
T 2z3z_A          121 EETASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY---GQAVHQRE-FGIEKGTFWSPK--  191 (706)
T ss_dssp             TCCTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE---SSCCGGGC-TTCCCSEEECTT--
T ss_pred             ccccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc---ccchhhhh-cCCCceEEECCC--
Confidence            345444  999999999995 589999999998     7765543322221100   00000001 112345666654  


Q ss_pred             ccccccCCcEEEEEE---------------------------------CCCeEEEEEccCCeEEEEec-CCCCCCEEEEE
Q 008041           79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS  124 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~---------------------------------~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~  124 (579)
                             +..|++++                                 .++.|++||+.+++...... ..|...+.+++
T Consensus       192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  264 (706)
T 2z3z_A          192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS  264 (706)
T ss_dssp             -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred             -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence                   66777776                                 34669999999988654332 25777899999


Q ss_pred             EccCCCEEEEEeCCC-----cEEEEeCCCCceeeEee-c-CCC---CeeEEEEcc--CCCEEEEEC--CeEEEEECC-CC
Q 008041          125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH  189 (579)
Q Consensus       125 ~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~p--~g~~l~~~~--~~i~vwd~~-~~  189 (579)
                      |+|||+++++++.++     .|++||+.+++....+. . +..   .+.+++|+|  ||++++++.  +.+++|+++ ++
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            999999999888776     89999999984443332 2 222   246789999  999988887  777888775 66


Q ss_pred             eeeEEeecCCCCEEE-EEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC
Q 008041          190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       190 ~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      +.+..+..|...+.. +.|+|+|+.|+.++..++    .|..||+.+++..      .+.+.. .+..+.|+     |||
T Consensus       345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~-~~~~~~~s-----pdg  412 (706)
T 2z3z_A          345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPES-GMHRTQLS-----PDG  412 (706)
T ss_dssp             CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSS-SEEEEEEC-----TTS
T ss_pred             CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCC-ceEEEEEC-----CCC
Confidence            777888888888877 799999998887775555    6777777765422      222333 34567777     999


Q ss_pred             cEEEEEEcC----CeEEEEEcCCce
Q 008041          265 LYVLAISET----GVCYIWYGQNIE  285 (579)
Q Consensus       265 ~~l~~~~~d----g~i~iwd~~~~~  285 (579)
                      ++++....+    +.|++||..+++
T Consensus       413 ~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          413 SAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CEEEEEecCCCCCcEEEEEECCCCe
Confidence            998877553    569999998876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=4.6e-18  Score=171.38  Aligned_cols=238  Identities=10%  Similarity=0.051  Sum_probs=159.9

Q ss_pred             EEEccCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           11 TSFSPALDYFAICSG-DAR--IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        11 ~~fspdg~~lasg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+|||||++|++++. +|.  |.+||..+++......++........|+++                           +.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~   93 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD   93 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence            479999999999987 664  888899999887655444333333344444                           77


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE--EccCCCEEEEE----------------------eCCCcEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE  143 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------~~d~~v~i  143 (579)
                      .|+.++.++.|++||+.+++..... ..+...+....  ++|+++.++..                      ..+..|++
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            8999999999999999998865433 34555454443  48999987743                      23467999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC-C-------eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCC
Q 008041          144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK  212 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~-~-------~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~  212 (579)
                      ||+.+++... +..+...+..++|+| ||+.++.+. +       .|+++|...++ ...+..+.  ..+..+.|+|||+
T Consensus       173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCC
Confidence            9999886544 444566789999999 999887755 1       68888876654 34444444  3577899999999


Q ss_pred             EEEEEecCCC----eEEEEEcCCCccccceeeeeeecCcee---EEeEEecCCcccCCCcEEEEE---------EcCCeE
Q 008041          213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC  276 (579)
Q Consensus       213 ~l~s~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~---------~~dg~i  276 (579)
                      .|+..+..++    .|++||+.+++..   .+.........   .....|+     |||+.|+..         ..+..|
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence            7766543322    3999999987643   22222110000   0112344     899888754         345689


Q ss_pred             EEEEcCCcee
Q 008041          277 YIWYGQNIEE  286 (579)
Q Consensus       277 ~iwd~~~~~~  286 (579)
                      ++||+.+++.
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=2.3e-18  Score=188.58  Aligned_cols=237  Identities=11%  Similarity=0.052  Sum_probs=165.2

Q ss_pred             eEEEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccC---ccccccccccccccccccccccceEEeeec
Q 008041            9 ILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADI---ASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         9 l~~~fspdg~~lasg~~d---------g~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      .+++|||||++||+++.+         +.|.+||+.+++. ..+...   ...+....|+++                  
T Consensus        64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd------------------  124 (723)
T 1xfd_A           64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK------------------  124 (723)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS------------------
T ss_pred             ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC------------------
Confidence            455999999999999864         7788999998876 333321   112334444444                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC------------------EEEEEEccCCCEEEEEeCC
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSAGAD  138 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~------------------V~~l~~~~~~~~l~s~~~d  138 (579)
                               +..|+.++. +.|++||+.+++..... ..+...                  +.+++|+|||++|++++.|
T Consensus       125 ---------G~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          125 ---------GQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             ---------TTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ---------CCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence                     667887776 79999999998876444 333333                  3789999999999988755


Q ss_pred             C----------------------------------cEEEEeCCCCceeeEeecC------CCCeeEEEEccCCCEEEEEC
Q 008041          139 G----------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       139 ~----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~g~~l~~~~  178 (579)
                      +                                  .|++||+.+++....+..+      ...+.+++|+|||+++++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence            3                                  7999999988765666544      55789999999999887653


Q ss_pred             ------CeEEEEECCCCeeeEEeec-CCCCE----EEEEEecCCCEEEEE-ecCCC------eEEEEE-cCCCcccccee
Q 008041          179 ------GQLKTFNCSDHKKMQKFSG-HPGAV----RFMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKKQSASC  239 (579)
Q Consensus       179 ------~~i~vwd~~~~~~~~~~~~-h~~~v----~~l~~s~~~~~l~s~-~~~d~------~i~vwd-~~~~~~~~~~~  239 (579)
                            ..|++||+.+++....+.. +...+    ..+.|+|||+.|+.. +..++      .|.+|| ...+...   +
T Consensus       274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~  350 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---N  350 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---C
T ss_pred             cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---c
Confidence                  4799999999987666543 33444    378999999977764 44677      566677 3333300   0


Q ss_pred             eeeee-cCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCC
Q 008041          240 VLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~  283 (579)
                      ...+. +.........|+     |||+.|+..+.+   +.+++|++..
T Consensus       351 ~~~l~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          351 IQSITSGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             CCBSCCSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             eeEeecCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence            11222 223333445777     999999877665   7899999764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=2e-17  Score=165.38  Aligned_cols=240  Identities=13%  Similarity=0.157  Sum_probs=161.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC-ccccccccccccccccccccccceEEeeecccccccccCC
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ..++|+|||++|++++.+ .|.+|++. +|+........ ...+..+.++++                           +
T Consensus        43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g   94 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------T   94 (365)
T ss_dssp             SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------C
T ss_pred             cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------C
Confidence            455999999999999888 99999997 78765433211 012333444443                           5


Q ss_pred             cE--EEEEE-------------CCCeEEEEEcc-CCeEEEEec---CCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeC
Q 008041           87 SL--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDP  146 (579)
Q Consensus        87 ~~--l~~~~-------------~~g~i~iwd~~-~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~  146 (579)
                      ..  ++++.             .+|.+.+|++. .++....+.   ..+...+.+++|+|||++++++.. ++.|++||+
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A           95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence            53  33442             68899999997 465433221   135568999999999998887764 679999999


Q ss_pred             C-CCcee--eEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCeee---EEee-------cCCC------
Q 008041          147 L-TGSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------  200 (579)
Q Consensus       147 ~-~~~~~--~~~~--~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~~~~---~~~~-------~h~~------  200 (579)
                      . +++..  ..+.  .+...+..++|+|||+++++++   +.|.+|+++  +++..   ..+.       +|..      
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            8 67653  2343  2356789999999999887765   789999765  56542   1222       1222      


Q ss_pred             CEEEEE-EecCCCEEEEEecCCC-----eEEEEEcC-CCccccceeee-eeecCceeEEeEEecCCcccC---CCcEEEE
Q 008041          201 AVRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLA  269 (579)
Q Consensus       201 ~v~~l~-~s~~~~~l~s~~~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~~  269 (579)
                      .+..++ |+|||++|+++...++     .|.+|++. +++..   .+. ...........+.++     |   ||++|++
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v  326 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAI  326 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEE
Confidence            478999 9999999887653333     89999996 33321   111 122222222344555     8   8999999


Q ss_pred             EEcC-CeEEEEEcCCc
Q 008041          270 ISET-GVCYIWYGQNI  284 (579)
Q Consensus       270 ~~~d-g~i~iwd~~~~  284 (579)
                      ++.+ +.|.+|+.+..
T Consensus       327 ~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          327 TDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSSCEEEEEEEETT
T ss_pred             EEcCCCeEEEEEEchh
Confidence            9874 89999998655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=2.3e-17  Score=180.81  Aligned_cols=247  Identities=11%  Similarity=0.016  Sum_probs=169.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|+|||++++++  ||.|++||+.++++...+.++........             .....|.|.         +..
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~Spd---------g~~   75 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHS-------------INDYSISPD---------GQF   75 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSC-------------CCEEEECTT---------SSE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhccc-------------ccceEECCC---------CCE
Confidence            345999999999986  89999999999998877766543221111             111333332         777


Q ss_pred             EEEEECC---------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecC
Q 008041           89 LVLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAS  158 (579)
Q Consensus        89 l~~~~~~---------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~  158 (579)
                      |++++.+         +.+++||+.+++.. . +..|...+...+|+|||+.|+.+ .|+.|++||+.+++..+. ..++
T Consensus        76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~  152 (740)
T 4a5s_A           76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (740)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEEC-C-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             EEEEECCeeeEEEccceEEEEEECCCCcEE-E-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence            8888875         66789999999875 2 35677889999999999999888 578999999988875542 2222


Q ss_pred             CCCe-----------------eEEEEccCCCEEEEEC---C-----------------------------------eEEE
Q 008041          159 TKGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKT  183 (579)
Q Consensus       159 ~~~v-----------------~~l~~~p~g~~l~~~~---~-----------------------------------~i~v  183 (579)
                      ...+                 .++.|||||+.|+.+.   +                                   .|++
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence            2222                 3589999999998763   1                                   5889


Q ss_pred             EECCC---Ce--eeEEee------cCCCCEEEEEEecCCCEEEEEecC---CCeEEEEEcCCCc----cccceeeeeeec
Q 008041          184 FNCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEH  245 (579)
Q Consensus       184 wd~~~---~~--~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~~---d~~i~vwd~~~~~----~~~~~~~~~~~~  245 (579)
                      ||+.+   ++  ....+.      +|...+..++|+|||+.++.....   +..|.+||+.+++    ......+....+
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~  312 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence            99998   73  233343      377889999999999966655322   2379999998876    211111111222


Q ss_pred             Ccee----EEeEEecCCcccCCCcEEE-EEEc-CC--eEEEEEcCCceee
Q 008041          246 PAVF----MDCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEEL  287 (579)
Q Consensus       246 ~~~~----~~~~~~~~~~~~~~~~~l~-~~~~-dg--~i~iwd~~~~~~~  287 (579)
                      ....    .....|+     |||+.|+ ..+. +|  .|++||..+++..
T Consensus       313 ~~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          313 TGWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             SSCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             CceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            2211    1234566     9999877 6654 44  7888898876544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.7e-16  Score=158.38  Aligned_cols=235  Identities=14%  Similarity=0.083  Sum_probs=149.6

Q ss_pred             EccCCCEEEEEeC----CCcEEEEEC--CCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041           13 FSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        13 fspdg~~lasg~~----dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ..+...+++.|+.    ++.|.+|++  .+++.......+...+.                  .+.|.+.         +
T Consensus         9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~------------------~l~~spd---------g   61 (361)
T 3scy_A            9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS------------------YLIPSAD---------G   61 (361)
T ss_dssp             GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC------------------SEEECTT---------S
T ss_pred             hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc------------------eEEECCC---------C
Confidence            3455556777754    567999865  56665432221222222                  3334332         6


Q ss_pred             cEEEEEECC----CeEEEEEccC--CeEE--EEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEe--
Q 008041           87 SLLVLGTGG----GDVLALAVSA--GQLK--WRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKF--  155 (579)
Q Consensus        87 ~~l~~~~~~----g~i~iwd~~~--~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~--  155 (579)
                      .+|++++.+    |.|.+|++..  ++..  ... ..+......+++  +++++++++ .++.|.+|++.....+..+  
T Consensus        62 ~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~  138 (361)
T 3scy_A           62 KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD  138 (361)
T ss_dssp             SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE
T ss_pred             CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce
Confidence            778888875    7899999876  4432  222 234556778888  888877776 6889999999754332211  


Q ss_pred             --e--c--------CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------e-------EEeecCCCCEEEEEE
Q 008041          156 --R--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------M-------QKFSGHPGAVRFMTF  207 (579)
Q Consensus       156 --~--~--------~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~------~-------~~~~~h~~~v~~l~~  207 (579)
                        .  +        +...+.+++|+|+|+++++++   +.|++|++.....      +       .....+...+..++|
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  218 (361)
T 3scy_A          139 VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF  218 (361)
T ss_dssp             EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE
T ss_pred             eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE
Confidence              1  1        122458899999999776654   7999998875431      1       112234456789999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC--CeEEEEEcC
Q 008041          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ  282 (579)
Q Consensus       208 s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~  282 (579)
                      +|||+++++++..++.|.+|++.+++......+............+.|+     |||++|++++.+  +.|.+|++.
T Consensus       219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          219 NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEc
Confidence            9999988887756899999999866432111111111112233567777     999999777664  899999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1.6e-17  Score=169.53  Aligned_cols=197  Identities=11%  Similarity=0.065  Sum_probs=142.1

Q ss_pred             CcccceEEEEccCCCEEE----EEeCCCcEEEEECCCC--------eE---EEEeccCcccccccccccccccccccccc
Q 008041            4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QV---QTEFADIASTETTSLYGNRLEREHLSVDY   68 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~la----sg~~dg~i~vwd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (579)
                      ++|  .+++|+|+|++||    +|+.|+.|+|||+.++        +.   ...+.                 +| ...+
T Consensus        93 ~~v--~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~h-~~~V  152 (434)
T 2oit_A           93 FPI--HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-----------------DA-GGMV  152 (434)
T ss_dssp             SCE--EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-----------------SG-GGSE
T ss_pred             Ccc--cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-----------------CC-CCce
Confidence            357  5569999999999    7888999999998754        11   22222                 22 2356


Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008041           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~  148 (579)
                      .++.|.+..        +.++++++.||.|++||+.++...... .+|...|++++|+|+|++|++|+.||+|++||++ 
T Consensus       153 ~~v~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-  222 (434)
T 2oit_A          153 IDMKWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-  222 (434)
T ss_dssp             EEEEECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred             EEEEECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence            677777653        678999999999999999998765444 4688999999999999999999999999999997 


Q ss_pred             CceeeEeecCC-------CCeeEEEEccCCCEEEEEC---C------eEEEEECCCCe-----eeEEee-------cCCC
Q 008041          149 GSLLGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHK-----KMQKFS-------GHPG  200 (579)
Q Consensus       149 ~~~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~---~------~i~vwd~~~~~-----~~~~~~-------~h~~  200 (579)
                      ++....+..+.       ..+.+++|++++.++++.+   |      .+++|+++..+     ....+.       +...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~  302 (434)
T 2oit_A          223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ  302 (434)
T ss_dssp             CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred             CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence            66666555432       3799999999988876543   2      38999998642     112221       2222


Q ss_pred             CEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          201 AVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      +-..+.+.++.+++++++.....|.+....
T Consensus       303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          303 HHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cceeeehhccCCEEEEecCCCCceeEEEec
Confidence            333344447778877777666666666643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=4.3e-16  Score=155.64  Aligned_cols=191  Identities=15%  Similarity=0.088  Sum_probs=130.5

Q ss_pred             CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCE--EEEEe-------------CCCcEEEEeCC-C
Q 008041           86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~~-------------~d~~v~iwd~~-~  148 (579)
                      +.++++++.+ .|.+|++. +++..........+.+.+++|+|+|++  +++++             .++.+.+|++. +
T Consensus        51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~  129 (365)
T 1jof_A           51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET  129 (365)
T ss_dssp             SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred             CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence            6778888877 99999997 777643221101123556899999995  44553             68999999997 4


Q ss_pred             CceeeEee----cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeee--EEee--cCCCCEEEEEEecCCCEEEE
Q 008041          149 GSLLGKFR----ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       149 ~~~~~~~~----~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~-~~~~~--~~~~--~h~~~v~~l~~s~~~~~l~s  216 (579)
                      ++....+.    .+...+.+++|+|||+++++++   +.|++||+. +++..  ..+.  .|...+..++|+|||+++++
T Consensus       130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence            66554443    2456789999999999888764   699999998 67643  3333  24567899999999999988


Q ss_pred             EecCCCeEEEEEcCC--Ccccc-ceeeeeeecC----ce------eEEeEE-ecCCcccCCCcEEEEEEcC-C-----eE
Q 008041          217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP----AV------FMDCRC-IDNGGVDDAGLYVLAISET-G-----VC  276 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~----~~------~~~~~~-~~~~~~~~~~~~l~~~~~d-g-----~i  276 (579)
                      ++..++.|.+|++..  ++... ...+..+...    ..      ....+. |+     |||++|++++.+ +     .|
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i  284 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence            775578999998763  33210 0011111111    10      345566 77     999998877653 3     89


Q ss_pred             EEEEcC
Q 008041          277 YIWYGQ  282 (579)
Q Consensus       277 ~iwd~~  282 (579)
                      .+|++.
T Consensus       285 ~v~~~~  290 (365)
T 1jof_A          285 AGFKLR  290 (365)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=1.6e-16  Score=157.43  Aligned_cols=144  Identities=17%  Similarity=0.173  Sum_probs=112.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCC-----
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST-----  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~-----  159 (579)
                      +.++++++.++.|++||+.+++.+..+..+....+..++|+|+|++++ ++..++.|++||+.+++.+..+....     
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~   90 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   90 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence            677889999999999999999987666433323678999999998765 45578999999999998887766432     


Q ss_pred             -CCeeEEEEccCCCEEEEEC--------------CeEEEEECCCCe---eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041          160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       160 -~~v~~l~~~p~g~~l~~~~--------------~~i~vwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                       ..+.+++|+|+|+++++++              +.|.+||+.+++   .+..+. +...+.+++|+|+|+ +++++   
T Consensus        91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~---  165 (349)
T 1jmx_B           91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG---  165 (349)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---
T ss_pred             cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---
Confidence             2378999999999998876              789999998854   334444 344688999999999 55543   


Q ss_pred             CeEEEEEcCCCcc
Q 008041          222 RYIALWRTDGVKK  234 (579)
Q Consensus       222 ~~i~vwd~~~~~~  234 (579)
                      +.|.+||+.+++.
T Consensus       166 ~~i~~~d~~~~~~  178 (349)
T 1jmx_B          166 PDIYKMDVKTGKY  178 (349)
T ss_dssp             SSEEEECTTTCCE
T ss_pred             CcEEEEeCCCCce
Confidence            3399999988763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=3.3e-15  Score=143.67  Aligned_cols=240  Identities=15%  Similarity=0.185  Sum_probs=163.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++|+|+++++...++.|.+||.. ++....+......           .++.. ....+++.+.+        +. 
T Consensus        33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----------~~~~~-~p~~i~~~~~~--------g~-   90 (286)
T 1q7f_A           33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQLL-YPNRVAVVRNS--------GD-   90 (286)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTCBS-SEEEEEEETTT--------TE-
T ss_pred             ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----------ccccc-CceEEEEEcCC--------Ce-
Confidence            455999999988888889999999987 6666555321100           01111 12334442221        33 


Q ss_pred             EEEEE-C-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--cCCCCeeE
Q 008041           89 LVLGT-G-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISC  164 (579)
Q Consensus        89 l~~~~-~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~  164 (579)
                      ++++. . ++.|.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|++||. .++.+..+.  .+...+.+
T Consensus        91 l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~  168 (286)
T 1q7f_A           91 IIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNG  168 (286)
T ss_dssp             EEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEE
T ss_pred             EEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEE
Confidence            44444 3 78899999 5666665554445567999999999987777777899999995 566666664  33457899


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCcccccee
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~-~i~vwd~~~~~~~~~~~  239 (579)
                      ++++|+|+++++..  +.|++||. +++.+..+..+  ...+..++++++|+.+++.. .++ .|.+|+..... .   .
T Consensus       169 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g~~-~---~  242 (286)
T 1q7f_A          169 VVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDGQL-I---S  242 (286)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTSCE-E---E
T ss_pred             EEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCCCE-E---E
Confidence            99999999877765  79999997 45566666533  36789999999998777765 565 99999964332 1   1


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .+...........+.++     |+|+++++ +.|++|++|+....
T Consensus       243 ~~~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEcccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence            12221222224456676     89986666 67999999987543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=2e-16  Score=159.65  Aligned_cols=232  Identities=9%  Similarity=0.012  Sum_probs=153.1

Q ss_pred             EEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           11 TSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        11 ~~fspdg~~lasg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ++|||||++|+.+...   ..|.+||..+++......+.....                  ....|.+.         +.
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~------------------~~~~~spd---------g~   93 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNT------------------FGGFISTD---------ER   93 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCT------------------TTCEECTT---------SS
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCcc------------------ccceECCC---------CC
Confidence            3899999999887643   468888999887654322211111                  11334332         77


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEE-------------------EEEccCCCEEEEE-----eCCCcEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GADGMVCE  143 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----~~d~~v~i  143 (579)
                      .|+.++.++.|++||+.+++..... ..+......                   +.|+|+++.++.+     ..+..|++
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            8999999999999999988764333 333332222                   3467777765543     35678999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC--------CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCC
Q 008041          144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGK  212 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~  212 (579)
                      ||+.+++..... .+...+..+.|+| +|+.++...        ..|++||+.+++. ..+..+  ...+..+.|+|+|+
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCC
Confidence            999888765544 4566889999999 788666653        2688999876643 333333  23578899999999


Q ss_pred             EEEEEecCC----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEE----------------
Q 008041          213 YVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS----------------  271 (579)
Q Consensus       213 ~l~s~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~----------------  271 (579)
                      +|+.++..+    +.|++||+.+++..   .+...  +.  .. ..|+     | +|+++++++                
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~--~~--~~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLENE---EVMVM--PP--CS-HLMS-----NFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCEE---EEEEC--CS--EE-EEEE-----CSSSSEEEEEECCC----------CCC
T ss_pred             EEEEEecCCCCccceEEEEECCCCCeE---EeeeC--CC--CC-CCcc-----CCCCceEEEecCCcceeeccccccccC
Confidence            877765322    44999999877533   22211  11  12 5565     8 999888765                


Q ss_pred             cCCeEEEEEcCCce
Q 008041          272 ETGVCYIWYGQNIE  285 (579)
Q Consensus       272 ~dg~i~iwd~~~~~  285 (579)
                      .++.|++||..+++
T Consensus       318 ~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          318 NDPFLYVLNTKAKS  331 (396)
T ss_dssp             CCCEEEEEETTTTB
T ss_pred             CCCcEEEEecccCc
Confidence            24689999987664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=1e-16  Score=175.44  Aligned_cols=273  Identities=13%  Similarity=0.059  Sum_probs=175.3

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCC---CEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeeEee
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~  156 (579)
                      ++..+.+|.|++||+.+++....+ .+|..   .+.+++|+|||++|++++.         ++.|++||+.+++.+....
T Consensus        29 ~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           29 YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence            555567999999999999876443 33432   4899999999999998876         7899999999887631111


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCE-----------------EEEEEecCCCEEEEE
Q 008041          157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV-----------------RFMTFSDNGKYVLSS  217 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~-~~h~~~v-----------------~~l~~s~~~~~l~s~  217 (579)
                       ....+.+++|+|||+.|+.+. +.|++||+.+++..... .++...|                 .++.|+|||++|+++
T Consensus       108 -l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~  186 (719)
T 1z68_A          108 -LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA  186 (719)
T ss_dssp             -CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred             -cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence             124688999999999999888 99999999988765322 2333322                 489999999999988


Q ss_pred             ecCCC---------------------------------eEEEEEcCCCccccceee---eeeecCceeEEeEEecCCccc
Q 008041          218 AVGER---------------------------------YIALWRTDGVKKQSASCV---LAMEHPAVFMDCRCIDNGGVD  261 (579)
Q Consensus       218 ~~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  261 (579)
                      +..++                                 .|++||+.+++......+   ..+..+...+..+.|+     
T Consensus       187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-----  261 (719)
T 1z68_A          187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-----  261 (719)
T ss_dssp             EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-----
T ss_pred             EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-----
Confidence            74221                                 788999987653100000   1122345566777787     


Q ss_pred             CCCcEEEEEEcC----CeEEEEE----cCCceeecccC----CeeEEee----eccCCcccccccchhhhh--cccccee
Q 008041          262 DAGLYVLAISET----GVCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKSQKSATAAIFA--AKLQDIV  323 (579)
Q Consensus       262 ~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~i~~--~~~~~~~  323 (579)
                      ||++.+++....    ..|.+||    ..+++......    .....+.    ....++++++    .++.  +..++  
T Consensus       262 pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~g--  335 (719)
T 1z68_A          262 TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI----SYYKIFSDKDG--  335 (719)
T ss_dssp             SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS----CEEEEEECTTS--
T ss_pred             CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC----eEEEEEEccCC--
Confidence            998877775433    2588899    87776554331    1111111    0123567766    3332  22222  


Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc----eecccceeee
Q 008041          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ  380 (579)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~----d~~~~~w~~~  380 (579)
                         ...++...-..  .....+..+...+..+.++ ||..+.++++.    ++..++|.+.
T Consensus       336 ---~~~l~~~~~~~--~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          336 ---YKHIHYIKDTV--ENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             ---CEEEEEESSCS--TTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             ---ceEEEEEECCC--CceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence               22333332111  1133455566667788878 88877455554    4778889874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=3.7e-15  Score=146.53  Aligned_cols=239  Identities=8%  Similarity=0.087  Sum_probs=167.0

Q ss_pred             CcccceEEEEccCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEecc-Ccccccccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFAD-IASTETTSLYGNR   58 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~d------------------------g~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~   58 (579)
                      +.+  ..++|+|+|+++++...+                        ++|.+||..+++....+.. +-..+        
T Consensus        24 ~~v--~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p--------   93 (329)
T 3fvz_A           24 GQV--SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP--------   93 (329)
T ss_dssp             SCE--EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE--------
T ss_pred             CCc--eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc--------
Confidence            456  445999999999888777                        4799999998988765531 11111        


Q ss_pred             ccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEec--------CCCCCCEEEEEEcc-C
Q 008041           59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-H  128 (579)
Q Consensus        59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~--------~~h~~~V~~l~~~~-~  128 (579)
                                ..+++.+.         +.++++.+.++.|++||..... .+..+-        .++.....+++|+| +
T Consensus        94 ----------~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~  154 (329)
T 3fvz_A           94 ----------HGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST  154 (329)
T ss_dssp             ----------EEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT
T ss_pred             ----------eEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC
Confidence                      22333321         6677777778999999986552 333332        24555799999999 7


Q ss_pred             CCEEEEEe-CCCcEEEEeCCCCceeeEeecCC----------CCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEE
Q 008041          129 GSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       129 ~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~  194 (579)
                      |..+++.+ .++.|++|| .+++.+..+....          ..+..++++|+ |.++++..  +.|++||..+++.+.+
T Consensus       155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~  233 (329)
T 3fvz_A          155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE  233 (329)
T ss_dssp             CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            87777775 699999999 5787777764322          24899999998 66666655  7999999998988888


Q ss_pred             ee--cCCCCEEEEEEecCCCEEEEEe------cCCCeEEEEEcCCCccccceeeeeee---cCceeEEeEEecCCcccCC
Q 008041          195 FS--GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLAME---HPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       195 ~~--~h~~~v~~l~~s~~~~~l~s~~------~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  263 (579)
                      +.  .+...+..++|+| +..+.+.+      ..+..|++|+..+++..     ..+.   ........++++     |+
T Consensus       234 ~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~~p~~ia~~-----~d  302 (329)
T 3fvz_A          234 IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----DVFKPVRKHFDMPHDIVAS-----ED  302 (329)
T ss_dssp             ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----EEECCSSSCCSSEEEEEEC-----TT
T ss_pred             EeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----EEEcCCCCccCCeeEEEEC-----CC
Confidence            74  4566788999999 43333222      13458999999887643     2221   223334566777     99


Q ss_pred             CcEEEEEEcCCeEEEEEcCC
Q 008041          264 GLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       264 ~~~l~~~~~dg~i~iwd~~~  283 (579)
                      |..+++...+++|++|++..
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98778888899999998753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.71  E-value=1.9e-16  Score=168.68  Aligned_cols=265  Identities=10%  Similarity=-0.031  Sum_probs=172.4

Q ss_pred             cccceEEeeecccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcE
Q 008041           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMV  141 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v  141 (579)
                      .++..+.+.+.         +..|++++. +|.+.||++.+++.. ++...+...+.++.|+|| +.+++++.   +...
T Consensus        22 ~~~~~~~~~~D---------G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           22 VEKYSLQGVVD---------GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             SCEEEEEEEET---------TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred             cchheeecCCC---------CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence            34555555553         677888776 999999999777664 444444468999999999 77777765   4555


Q ss_pred             EEEeCCC---CceeeEeecCCCCeeEEEEccCCCE--EEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041          142 CEIDPLT---GSLLGKFRASTKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       142 ~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~g~~--l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      .+|.+..   +... .+... ..+...+|+|+|+.  ++++. +.+.+||+.+++.......+ .  .++.|+|||++++
T Consensus        91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la  165 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIA  165 (582)
T ss_dssp             EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEE
T ss_pred             EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEE
Confidence            5654432   3332 33322 23456788888864  44444 66779999998765544433 3  7899999999999


Q ss_pred             EEecCC----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC--eEEEEEcCCceeecc
Q 008041          216 SSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRN  289 (579)
Q Consensus       216 s~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~  289 (579)
                      +++ .|    +.|++||+.+++..      .+..+........|+     |||++|+++..+|  .|++||+.+++.. .
T Consensus       166 ~~~-~~~~~~~~i~~~d~~~g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          166 GLG-FFGGGRVSLFTSNLSSGGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEE-EEETTEEEEEEEETTTCCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             EEE-EcCCCCeEEEEEcCCCCCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            776 35    67999999887643      233444455777887     9999999888888  8999999988765 3


Q ss_pred             cCCeeEEeeeccC--------CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008041          290 TKATKILSSSEDV--------NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG  361 (579)
Q Consensus       290 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (579)
                      .......+.. ..        ++++++    .+++++.++.++++.     . |.    ..   ..+...+.+++|+ ||
T Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~spdg~----~~~~~~~~g~~~l~~-----~-g~----~~---~~~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          233 LELPSKDFSS-YRPTAITWLGYLPDGR----LAVVARREGRSAVFI-----D-GE----RV---EAPQGNHGRVVLW-RG  293 (582)
T ss_dssp             CCCSCSHHHH-HCCSEEEEEEECTTSC----EEEEEEETTEEEEEE-----T-TE----EE---CCCSSEEEEEEEE-TT
T ss_pred             ccCCCcChhh-hhhccccceeEcCCCc----EEEEEEcCCcEEEEE-----E-CC----ee---ccCCCceEEEEec-CC
Confidence            2222111111 12        567764    677777766443322     1 21    11   1334567899999 99


Q ss_pred             ceeeccccceec---ccceee
Q 008041          362 VLLPMSQSLLKS---KRGRYV  379 (579)
Q Consensus       362 ~~l~~s~s~d~~---~~~w~~  379 (579)
                      +++ ++++.+.+   +++|+.
T Consensus       294 ~~l-~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          294 KLV-TSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEE-EEEEETTEEEEEEEETT
T ss_pred             EEE-EEEcCCCCCCeEEEEcC
Confidence            998 66665533   445544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=5.3e-15  Score=160.12  Aligned_cols=249  Identities=9%  Similarity=0.037  Sum_probs=159.5

Q ss_pred             CcccceEEEEccCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeee-ccccc
Q 008041            4 SNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKK   80 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~   80 (579)
                      ..|+  .++|++++-++++.  +.+++..||....+.....+..+...+.....         ........|.. ++   
T Consensus        24 ~~~~--~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~SPD---   89 (662)
T 3azo_A           24 GRPA--CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVF---------EYSGFPWAGVPRPA---   89 (662)
T ss_dssp             SCCE--EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGG---------GTCCCCEEEECCSS---
T ss_pred             Cccc--eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccccccc---------ccCCccceeeeecC---
Confidence            4453  44899887777776  55888999986544444555544322221000         00111233441 22   


Q ss_pred             ccccCCcE-EEEEEC-CCeEEEEEcc--C-CeEEEEecCC----CCCCEEEEEEccCCCEEEEEeCC----------CcE
Q 008041           81 KRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GMV  141 (579)
Q Consensus        81 ~~~~~~~~-l~~~~~-~g~i~iwd~~--~-~~~~~~~~~~----h~~~V~~l~~~~~~~~l~s~~~d----------~~v  141 (579)
                           +.. |+.++. +..|++|++.  + ++.. .+...    |...+.+++|+|||+.|++++.|          ..|
T Consensus        90 -----g~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i  163 (662)
T 3azo_A           90 -----GGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL  163 (662)
T ss_dssp             -----SSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred             -----CCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence                 454 554443 5667777776  3 4432 33221    66788999999999999988877          589


Q ss_pred             EEEeCCC------CceeeEee-cCCCCeeEEEEccCCCEEEEEC----------CeEEEEECC-CC---eeeEEeecCCC
Q 008041          142 CEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA----------GQLKTFNCS-DH---KKMQKFSGHPG  200 (579)
Q Consensus       142 ~iwd~~~------~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~-~~---~~~~~~~~h~~  200 (579)
                      ++||+.+      ++. ..+. .+...+..++|+|||+.|+.++          ..|++||+. ++   +......+|..
T Consensus       164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~  242 (662)
T 3azo_A          164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE  242 (662)
T ss_dssp             EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred             EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence            9999987      544 4444 5556788899999999998765          279999999 57   44444455678


Q ss_pred             CEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecCcee--------EEeEEecCCcccCCCcEEEEE
Q 008041          201 AVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       201 ~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~  270 (579)
                      .+..+.|+|||++++++. .++  .|.+||+.+++..   .  ...++...        ...+.++     |++++++++
T Consensus       243 ~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~---~--l~~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~~  311 (662)
T 3azo_A          243 AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT---Q--LCRREEEFAGPLWTPGMRWFAPL-----ANGLIAVVH  311 (662)
T ss_dssp             CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE---E--SSCCSSBSSCCCCSTTCCSEEEC-----TTSCEEEEE
T ss_pred             eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee---e--cccccccccCccccccCceEeEe-----CCCEEEEEE
Confidence            899999999999666554 677  5666666555422   1  11111111        2345555     889999999


Q ss_pred             EcCCeEEEE--EcCCce
Q 008041          271 SETGVCYIW--YGQNIE  285 (579)
Q Consensus       271 ~~dg~i~iw--d~~~~~  285 (579)
                      +. |.+++|  |..+++
T Consensus       312 ~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          312 GK-GAAVLGILDPESGE  327 (662)
T ss_dssp             BS-SSCEEEEEETTTTE
T ss_pred             Ec-CccEEEEEECCCCc
Confidence            88 999998  555554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=2.3e-14  Score=140.98  Aligned_cols=242  Identities=12%  Similarity=0.107  Sum_probs=162.6

Q ss_pred             CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         1 ~~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      |++..|..+  +|+|++..++..+.++.++.|   .+.....+..+...                  ...+.|.+.    
T Consensus         3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~----   55 (333)
T 2dg1_A            3 MSQQDLPTL--FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQ------------------LEGLNFDRQ----   55 (333)
T ss_dssp             ---CCCCBC--CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCC------------------EEEEEECTT----
T ss_pred             cccccccee--eecCCccceeEEeecccCccc---ccceeEEEeccCcc------------------ccCcEECCC----
Confidence            456678555  999999888877888899999   34444444332222                  234455431    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEee
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~  156 (579)
                           +.++++++.++.|.+||..+++..... ..+...+.+++|+|+|+.+++...+    +.|.+||..++.....+.
T Consensus        56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~  129 (333)
T 2dg1_A           56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  129 (333)
T ss_dssp             -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence                 666677788899999999988765333 2456789999999999877777666    689999988776543332


Q ss_pred             --cCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       157 --~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                        .+...+.+++++|+|+++++..        +.|+.||..+++.. .+..+...+..++|+|++++++.+...++.|.+
T Consensus       130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence              2345789999999999888765        35666666555433 333334557899999999877665546789999


Q ss_pred             EEcCCC-ccccc---eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          227 WRTDGV-KKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       227 wd~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      |++... .....   ....... .......++++     ++|+..++...++.|.+||.+
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFT-GHEGPDSCCID-----SDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEB-----TTCCEEEEEETTTEEEEECTT
T ss_pred             EEecCCCcCcccccceEEEecC-CCCCCCceEEC-----CCCCEEEEEcCCCEEEEECCC
Confidence            999642 21100   0011111 11345567776     889887777778999999873

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.65  E-value=2.4e-14  Score=144.08  Aligned_cols=218  Identities=13%  Similarity=0.093  Sum_probs=152.9

Q ss_pred             EEEECCCCeEEEEeccCcccccc-----ccccccccccccccccceEEeeecccccccccCCcEEEEEEC-CC--eEEEE
Q 008041           30 KIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG--DVLAL  101 (579)
Q Consensus        30 ~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g--~i~iw  101 (579)
                      ..+|..+|.....+..+......     ..|+++                           +..|+.++. +|  .|.+|
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~   65 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLL   65 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEE
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEE
Confidence            34577788888777765533332     334443                           677777776 66  49999


Q ss_pred             EccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE--EccCCCEEEEE--
Q 008041          102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA--  177 (579)
Q Consensus       102 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~--~~p~g~~l~~~--  177 (579)
                      |+.+++... +..++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|+|+.++..  
T Consensus        66 d~~~g~~~~-lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  144 (388)
T 3pe7_A           66 DLNTQVATQ-LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEI  144 (388)
T ss_dssp             ETTTCEEEE-CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred             eCCCCceEE-eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccc
Confidence            999988763 4455665666778999999999999999999999999988777766665554444  48999998742  


Q ss_pred             --------------------C--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecC-----CCeEEEEEc
Q 008041          178 --------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRT  229 (579)
Q Consensus       178 --------------------~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~-----d~~i~vwd~  229 (579)
                                          .  +.|++||+.+++.. .+..+...+..+.|+| ||+.++.++..     +..|.+++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                                1  57999999998654 4455677899999999 99988877632     236888887


Q ss_pred             CCCccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEEc-CC----eEEEEEcCCcee
Q 008041          230 DGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEE  286 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~  286 (579)
                      ......   .+  ..+. ...+....|+     |||+.|+..+. ++    .|++||+.+++.
T Consensus       224 ~~~~~~---~l--~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          224 DGTNMR---KV--KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TSCCCE---ES--CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCceE---Ee--eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            765422   11  1122 1344556677     99998766554 22    399999987753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=3.4e-14  Score=141.36  Aligned_cols=291  Identities=11%  Similarity=0.034  Sum_probs=184.1

Q ss_pred             cCCCEEEEEe------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        15 pdg~~lasg~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++++++....      .|+.|.+||..+++.+..+.....+  .+.|+++                           +.+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~   63 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK   63 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence            4677666554      3789999999999988777543322  3444444                           677


Q ss_pred             EEEEEC----------CCeEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCce
Q 008041           89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL  151 (579)
Q Consensus        89 l~~~~~----------~g~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~  151 (579)
                      ++++..          ++.|.+||+.+++.+.++...     +......++|+|||++++++..  +++|.+||+.+++.
T Consensus        64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY  143 (361)
T ss_dssp             EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred             EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence            777763          567999999998887665321     2345678999999999998864  68999999999988


Q ss_pred             eeE-eecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCC-CeeeEE------eecCCCCEEEEEEecCCCEEEEEecC
Q 008041          152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 ~~~-~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~-~~~~~~------~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      +.. +...  ....+.+.|++ ..+++.+  |.+.+|+... ++....      +..+..++ .+.+++++..++..+ .
T Consensus       144 ~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~  219 (361)
T 2oiz_A          144 VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y  219 (361)
T ss_dssp             EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred             EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence            877 5532  22335677876 3444433  8888888865 554422      22222332 344578887777776 6


Q ss_pred             CCeEEEEEcCCCccccceeeeeee-------cCc---eeEEeEEecCCcccCCCcEEEEEEc-----------CCeEEEE
Q 008041          221 ERYIALWRTDGVKKQSASCVLAME-------HPA---VFMDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIW  279 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iw  279 (579)
                      ++.+.++|+......   ......       ...   .....+.++     |+++.++++..           .+.|.+|
T Consensus       220 ~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          220 YGNVYSADFSGDEVK---VDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             TSEEEEEECSSSSCE---EEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CCeEEEEEecCCCce---ecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            899999999765422   111110       000   001124555     89888877654           3489999


Q ss_pred             EcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC--ceeEEEecCCCCcEEEee
Q 008041          280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNC  357 (579)
Q Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~~~~  357 (579)
                      |..+++.+..+....  .... .++++++    .+++++. +.+..       .+ ....  .....+..+...-..+++
T Consensus       292 D~~t~~~v~~i~~~~--p~~i-a~spdg~----~l~v~n~-~~v~v-------~D-~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD--ALSM-TIDQQRN----LMLTLDG-GNVNV-------YD-ISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             ETTTTEEEEEEECTT--CCEE-EEETTTT----EEEEECS-SCEEE-------EE-CSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             ECCCCcEEEEEecCC--eeEE-EECCCCC----EEEEeCC-CeEEE-------EE-CCCCcceeeEEeccCCCCcEEEEe
Confidence            999998887654333  1211 2577777    6666554 32222       22 2223  444455455556788999


Q ss_pred             cCCcc
Q 008041          358 SQDGV  362 (579)
Q Consensus       358 s~dg~  362 (579)
                      +|||.
T Consensus       356 ~p~G~  360 (361)
T 2oiz_A          356 HPVGG  360 (361)
T ss_dssp             CCCSC
T ss_pred             cCCCC
Confidence            99986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.63  E-value=1.2e-14  Score=159.30  Aligned_cols=194  Identities=13%  Similarity=0.079  Sum_probs=135.0

Q ss_pred             EEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041           11 TSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus        11 ~~fspdg~~lasg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+|||||++|++++.+         +.+.+||+.+++... +..+...+..                  ..|.|.     
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~------------------~~~SPd-----  122 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQW------------------VTWSPV-----  122 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEE------------------EEECSS-----
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCccee------------------eEECCC-----
Confidence            4889999999998875         566799999998653 4333333333                  344432     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----------------EEEEEccCCCEEEEEeCCC-----
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGADG-----  139 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~~~l~s~~~d~-----  139 (579)
                          +..|+.+ .+++|++|++.+++.......++...+                 .++.|+|||+.|+.++.|.     
T Consensus       123 ----G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~  197 (740)
T 4a5s_A          123 ----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL  197 (740)
T ss_dssp             ----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred             ----CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence                6667776 568999999999886544434444433                 3489999999998875332     


Q ss_pred             -------------------------------cEEEEeCCC---Cc--eeeEee------cCCCCeeEEEEccCCCEEEEE
Q 008041          140 -------------------------------MVCEIDPLT---GS--LLGKFR------ASTKGISCMAVSSDGKMLATA  177 (579)
Q Consensus       140 -------------------------------~v~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~p~g~~l~~~  177 (579)
                                                     +|++||+.+   ++  ....+.      ++...+..++|+|||+.++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence                                           488899988   73  222333      266789999999999976665


Q ss_pred             C------CeEEEEECCCCe----e--eEEe--ecCCCCEE-----EEEEecCCCEEE-EEecCCC--eEEEEEcCCCc
Q 008041          178 A------GQLKTFNCSDHK----K--MQKF--SGHPGAVR-----FMTFSDNGKYVL-SSAVGER--YIALWRTDGVK  233 (579)
Q Consensus       178 ~------~~i~vwd~~~~~----~--~~~~--~~h~~~v~-----~l~~s~~~~~l~-s~~~~d~--~i~vwd~~~~~  233 (579)
                      .      ..|++||+.+++    +  +.++  .+|...|.     .+.|+|||+.++ ..+..+|  .|++||+.+++
T Consensus       278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            3      379999999887    2  2222  45665554     789999999877 6654444  68888888765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=1.5e-13  Score=130.87  Aligned_cols=213  Identities=10%  Similarity=0.099  Sum_probs=157.2

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041           15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        15 pdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      ..+++|++++.|+.|.+||.++|+.+.++..+. ..+....+.++                           +++++  +
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---------------------------G~ilv--s   53 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---------------------------GEILF--S   53 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---------------------------SCEEE--E
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---------------------------CCEEE--e
Confidence            346799999999999999999999999887543 12222222222                           56566  5


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecC------CCCeeEEE
Q 008041           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAS------TKGISCMA  166 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~------~~~v~~l~  166 (579)
                      .++.|+.||. +++.++++..++...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+...      ......++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            6788999999 899998885444457899999999999999887 888888885 78887776521      12455678


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +.++|+++++..  +.|.+||.+ |+.+.++..+ ..+.++.+.++|+.+++++ .++.|..+|..+++..     ....
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~-----w~~~  203 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV-----RRVN  203 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE-----EEEE
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE-----EEec
Confidence            899999999887  899999988 9999888764 3456778889999888776 5778999999987643     3332


Q ss_pred             cC------ceeEEeEEecCCcccCCCcEEEEEE
Q 008041          245 HP------AVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       245 ~~------~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      ..      -.........     ++|..+++..
T Consensus       204 ~~~~~~~~l~~~~~~~~~-----~~G~i~v~~~  231 (276)
T 3no2_A          204 ANDIEGVQLFFVAQLFPL-----QNGGLYICNW  231 (276)
T ss_dssp             GGGSBSCCCSEEEEEEEC-----TTSCEEEEEE
T ss_pred             CCCCCCccccccccceEc-----CCCCEEEEec
Confidence            11      1223444444     7888877764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=3.4e-13  Score=141.08  Aligned_cols=233  Identities=9%  Similarity=-0.006  Sum_probs=164.4

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        13 fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      .+|.+.++++...+++|.++|..+++.+.++.... .+..+.|+++                           +.+++++
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpD---------------------------Gr~lyv~  214 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVI  214 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCC---------------------------CCEEEEE
Confidence            34545566677778999999999999988775322 1223334443                           7889999


Q ss_pred             ECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEc----cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------
Q 008041           93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------  158 (579)
Q Consensus        93 ~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-------  158 (579)
                      +.++.|.+||+.  +++.+.++..+  .....++|+    |||+++++++ .+++|.++|..+.+.+..+...       
T Consensus       215 ~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~  292 (567)
T 1qks_A          215 GRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ  292 (567)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred             cCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence            999999999996  77777666432  347899999    6999987766 5699999999999888876532       


Q ss_pred             ----CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       159 ----~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                          ...+..+..++++..++...   |.|.++|..+.+.+  ..+ ........+.|+|+|+++++++..++.|.++|+
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence                12678899999877666553   89999998875432  222 234456788999999999888767899999999


Q ss_pred             CCCccccceee-eeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCC
Q 008041          230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQN  283 (579)
Q Consensus       230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  283 (579)
                      .+++......+ ....|+.....  ++.     |++..+.+.+  .++.|.++|..+
T Consensus       372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence            98864421111 11223322222  244     7755554444  368999999887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=1.4e-13  Score=136.93  Aligned_cols=237  Identities=13%  Similarity=0.100  Sum_probs=161.3

Q ss_pred             EEEEccCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCc------cccccccccccccccccccccceEEe
Q 008041           10 LTSFSPALDYFAICSG----------DARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        10 ~~~fspdg~~lasg~~----------dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      .++|||||+++++++.          ++.|.+||..+++.+.++....      ..+..+.++++               
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd---------------  118 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD---------------  118 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence            4599999999988862          6789999999999888775321      12222333333               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCC-
Q 008041           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT-  148 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~-  148 (579)
                                  +++++++..  ++.|.+||+.+++.+.. +.  + .....+.+.|++ ..+++.+.||.+..|++.. 
T Consensus       119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTA--A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGG--G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEec--C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence                        777888774  57899999999998876 52  2 233446677876 5688889999999999865 


Q ss_pred             Cceee------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeec------C----CCCEEEEEEe
Q 008041          149 GSLLG------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG------H----PGAVRFMTFS  208 (579)
Q Consensus       149 ~~~~~------~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~--~~~~~~------h----~~~v~~l~~s  208 (579)
                      ++...      .+.....+ ..+.++|++..++..+  +.++++|+.....  +..+.-      +    ......++|+
T Consensus       184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~  262 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH  262 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred             CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence            55442      22222222 2334467777666655  8999999875532  222211      0    0112237899


Q ss_pred             cCCCEEEEEec----------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041          209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       209 ~~~~~l~s~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  278 (579)
                      |+++.++++..          .++.|.+||+.+.+..     ..+..+.  ...+.++     |||++|++++. +.|.+
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence            99888877642          1348999999987643     3444444  5666777     99999998887 99999


Q ss_pred             EEcCCc--eeeccc
Q 008041          279 WYGQNI--EELRNT  290 (579)
Q Consensus       279 wd~~~~--~~~~~~  290 (579)
                      ||..++  +.+..+
T Consensus       330 ~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          330 YDISQPEPKLLRTI  343 (361)
T ss_dssp             EECSSSSCEEEEEE
T ss_pred             EECCCCcceeeEEe
Confidence            999999  877654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=3.5e-13  Score=146.86  Aligned_cols=237  Identities=12%  Similarity=0.079  Sum_probs=159.8

Q ss_pred             eEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      -.++|||||++||.++.++     .|++||+.+|+........                   .....+.|.+.       
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------------------~~~~~~~wspD-------  181 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------------------VKFSCMAWTHD-------  181 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------------------ECSCCEEECTT-------
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------------------cccceEEEEeC-------
Confidence            3459999999999876533     8999999999876532110                   01234566553       


Q ss_pred             cCCcEEEEEECCCe----------------EEEEEccCCeEE--EEe-cCCCCCCEEEEEEccCCCEEEEEeC-----CC
Q 008041           84 LGSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DG  139 (579)
Q Consensus        84 ~~~~~l~~~~~~g~----------------i~iwd~~~~~~~--~~~-~~~h~~~V~~l~~~~~~~~l~s~~~-----d~  139 (579)
                        +..|+.++.++.                |++|++.++...  ..+ ...|...+.++.|+|||++|+.++.     +.
T Consensus       182 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  259 (710)
T 2xdw_A          182 --GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (710)
T ss_dssp             --SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             --CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence              667888777655                999999887621  111 1235566889999999999887764     56


Q ss_pred             cEEEEeCCC------Cc-eeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe--eeEEeecCCC--CE
Q 008041          140 MVCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AV  202 (579)
Q Consensus       140 ~v~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~--~~~~~~~h~~--~v  202 (579)
                      .|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+      +.|.+||+.+++  ....+..|..  .+
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  338 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence            899999976      43 45566666665554 5889998777654      379999998874  2345555544  67


Q ss_pred             EEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-E---cCCeE
Q 008041          203 RFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVC  276 (579)
Q Consensus       203 ~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---~dg~i  276 (579)
                      ..+.|++++..+++.. .|+.  |.+|++.+++..     ..+..+...+..+.++     |++..++.. +   ..+++
T Consensus       339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             EEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEE
T ss_pred             EEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEE
Confidence            8899987776666665 5774  566676555422     2233334445555665     788766544 2   25799


Q ss_pred             EEEEcCCce
Q 008041          277 YIWYGQNIE  285 (579)
Q Consensus       277 ~iwd~~~~~  285 (579)
                      +.||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=2.2e-13  Score=129.50  Aligned_cols=238  Identities=8%  Similarity=-0.050  Sum_probs=155.9

Q ss_pred             eEEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..++++|+|++++ +.+.++.|.+||..++...........                  ....+.+.+.         +.
T Consensus        27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------~p~~i~~~~~---------g~   79 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY------------------QPQGLAVDGA---------GT   79 (270)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC------------------SCCCEEECTT---------CC
T ss_pred             cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC------------------CcceeEECCC---------CC
Confidence            4558999999777 446788999999765543221111101                  1223333321         44


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                       ++++..++.|.+||..++... .+.......+.++++.++|+.+++...++.|.+|+..+.............+.++++
T Consensus        80 -l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           80 -VYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             -EEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             -EEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence             455555889999998876543 232233367899999999987777777889999986555433322223346789999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      +|+|+++++..  +.|.+||............+...+..++++++|..+++.. .++.|.+|+.......     .....
T Consensus       158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~-----~~~~~  231 (270)
T 1rwi_B          158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST-----VLPFT  231 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE-----ECCCC
T ss_pred             eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce-----eeccC
Confidence            99999777765  7999999887655433333446788999999997666554 6889999998765322     11111


Q ss_pred             CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      .......++++     ++|+.+++...+++|++|+....+.
T Consensus       232 ~~~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          232 GLNTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             SCSCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence            11334566676     8999888888899999999876554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.61  E-value=1.8e-13  Score=134.48  Aligned_cols=222  Identities=11%  Similarity=0.035  Sum_probs=151.5

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEee---------cCCCCeeEE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM  165 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~---------~~~~~v~~l  165 (579)
                      +.|.+||..+++.......++...+.+++++|+|+.+++...++.|++||..... .+..+.         .+...+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4799999999998766655566789999999999988888889999999975332 455552         333478999


Q ss_pred             EEcc-CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       166 ~~~p-~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h----------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      +++| +|.++++.+   +.|++|| .+++.+..+...          -.....++++|++..++++...++.|++|+..+
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            9999 888888873   7999999 567777766422          234789999999444444445789999999986


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE-------EEcCCeEEEEEcCCceeecccCCeeEEeeeccCCc
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-------ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS  304 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  304 (579)
                      ++..   ..............+.++     | +..+++       ...+++|++||..+++.+....+            
T Consensus       228 G~~~---~~~~~~~~~~~~~~~~~~-----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------  286 (329)
T 3fvz_A          228 KEFV---REIKHASFGRNVFAISYI-----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------  286 (329)
T ss_dssp             CCEE---EEECCTTTTTCEEEEEEE-----T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------
T ss_pred             CcEE---EEEeccccCCCcceeeec-----C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------
Confidence            6532   111112222233345555     6 333332       23344788888776654432110            


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                              ...+......++++|||.++ ++.+.++.|++|++.
T Consensus       287 ----------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~  321 (329)
T 3fvz_A          287 ----------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT  321 (329)
T ss_dssp             ----------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred             ----------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence                                                    01233457889999999777 888888999999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=1.1e-13  Score=139.44  Aligned_cols=249  Identities=10%  Similarity=0.056  Sum_probs=151.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccc---ccccccccccccccccceEEeeecccccccccCCc
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT---SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +.|||||++|++++.++.|.+||+.+++....+..+......   +.|...  ............|.+.         +.
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~~spd---------g~  154 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVGIEILKRDWQPL---------TS  154 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCC---------CS
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--CccccccccccccCCC---------Cc
Confidence            479999999999999999999999988876555433221100   111100  0000000000112111         22


Q ss_pred             EEEEE-----ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceeeEe
Q 008041           88 LLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        88 ~l~~~-----~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~  155 (579)
                      .++.+     ..+..|++||+.+++.....  .+...+..+.|+| +++.++.++.+      ..|.+||+..++.....
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  232 (396)
T 3c5m_A          155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK  232 (396)
T ss_dssp             HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred             ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence            23332     34567999999988765333  4667899999999 78877766543      46889998765543333


Q ss_pred             ecC-CCCeeEEEEccCCCEEEEEC-----Ce--EEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEec-------
Q 008041          156 RAS-TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV-------  219 (579)
Q Consensus       156 ~~~-~~~v~~l~~~p~g~~l~~~~-----~~--i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~-------  219 (579)
                      ... ...+..++|+|||+.|+.++     ..  |++||+.+++...... ... .. +.|+| +|+++++++.       
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~  309 (396)
T 3c5m_A          233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVA  309 (396)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred             ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeec
Confidence            321 23578899999999877764     24  9999998886543222 222 33 89999 9998877541       


Q ss_pred             --------CCCeEEEEEcCCCccccceeeeeeecCce----------eEEeEEecCCcccCCCcEEEEEEc-CCeEEEE-
Q 008041          220 --------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW-  279 (579)
Q Consensus       220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw-  279 (579)
                              .+..|++||+.+++..   .+.  .+...          ......|+     |+|+.|+.++. ++...+| 
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~~---~l~--~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          310 DADSYNIENDPFLYVLNTKAKSAQ---KLC--KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             -----CCCCCCEEEEEETTTTBCC---EEE--ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTTSSCEEEE
T ss_pred             cccccccCCCCcEEEEecccCceE---Ecc--CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCCCCceEEE
Confidence                    2478999999877533   111  11111          12234565     99998887765 5554444 


Q ss_pred             -EcCCce
Q 008041          280 -YGQNIE  285 (579)
Q Consensus       280 -d~~~~~  285 (579)
                       ++.+++
T Consensus       380 ~~~~~~~  386 (396)
T 3c5m_A          380 ADVPESY  386 (396)
T ss_dssp             EECCTTC
T ss_pred             EEEcccc
Confidence             554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=6.2e-13  Score=128.43  Aligned_cols=231  Identities=12%  Similarity=0.084  Sum_probs=152.4

Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+|+ +++++..++.|..||..++  ...+..+...+.                  .+.+.+.         +.+
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------~l~~~~d---------g~l   82 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQN------------------GHCLNKQ---------GHL   82 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEE------------------EEEECTT---------CCE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcc------------------eeeECCC---------CcE
Confidence            458999998 6777788899999999887  444543332222                  3333321         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEec--C-CCCCCEEEEEEccCCCEEEEE----e-------------CCCcEEEEeCCC
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLS--D-CHPGGVSAISFATHGSCIYSA----G-------------ADGMVCEIDPLT  148 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~--~-~h~~~V~~l~~~~~~~~l~s~----~-------------~d~~v~iwd~~~  148 (579)
                      +++...++.|.+||..+++......  . .....+.+++++|+|+++++.    +             ..+.|..++.. 
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence            5555556889999998887643221  1 112356789999999987773    2             13467777754 


Q ss_pred             CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                      ++ +..+..+...+..++|+|+|+.+++..  +.|++|++. +++.   ...+..+...+..++++++|+.+++.   ++
T Consensus       162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~  237 (296)
T 3e5z_A          162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD  237 (296)
T ss_dssp             SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred             CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence            44 344455566789999999999986555  799999987 4544   23333345567789999999866554   67


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      .|.+|+.. ++.     ...+..+.. ...+.|.    .|+++.|++++.+ .+.-++.++.+.
T Consensus       238 ~v~~~~~~-g~~-----~~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          238 GVHVLTPD-GDE-----LGRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEECTT-SCE-----EEEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             eEEEECCC-CCE-----EEEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence            89999986 332     223333333 4555562    1888989888875 455666665543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=1.6e-12  Score=124.74  Aligned_cols=181  Identities=13%  Similarity=0.205  Sum_probs=129.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEec-----CCCCCCEEEEEE-ccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec-
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-----DCHPGGVSAISF-ATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA-  157 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-----~~h~~~V~~l~~-~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~-  157 (579)
                      +.++++.+.++.|.+||.. ++.+..+.     .+|...+.++++ .++++.+++... ++.|++|| .+++.+..+.. 
T Consensus        41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~  118 (286)
T 1q7f_A           41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT  118 (286)
T ss_dssp             CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT
T ss_pred             CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc
Confidence            5666666788999999987 55544442     134567899999 467765555533 88999999 67777776643 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +...+.+++++|+|+++++..  +.|++||. .++.+..+.  ++...+..++++|+|+.+++.. .++.|++|+.....
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~  196 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAHCVKVFNYEGQY  196 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGTEEEEEETTCCE
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CCCEEEEEcCCCCE
Confidence            335789999999999888765  79999996 455666664  4456789999999998666654 68899999975432


Q ss_pred             cccceeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCC-eEEEEEc
Q 008041          234 KQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG  281 (579)
Q Consensus       234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~  281 (579)
                            +..+...  ......++++     ++|+++++...++ .|.+||.
T Consensus       197 ------~~~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          197 ------LRQIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             ------EEEESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECT
T ss_pred             ------EEEEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECC
Confidence                  1222222  1345567776     8998888887776 9999984

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=1.4e-12  Score=128.84  Aligned_cols=213  Identities=10%  Similarity=0.081  Sum_probs=137.6

Q ss_pred             EEccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041           12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        12 ~fspdg~~lasg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++  ||+++|...         .++.|.+||+.+++... +    ..+.                  ...|.|.      
T Consensus        21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~------------------~~~~SpD------   69 (347)
T 2gop_A           21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENAT------------------MPRISPD------   69 (347)
T ss_dssp             EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCE------------------EEEECTT------
T ss_pred             eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCC------------------CeEECCC------
Confidence            56  899888753         25679999999887543 2    1222                  3344432      


Q ss_pred             ccCCcEEEEEECC---C--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-------------------
Q 008041           83 KLGSSLLVLGTGG---G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------------------  138 (579)
Q Consensus        83 ~~~~~~l~~~~~~---g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-------------------  138 (579)
                         +..|+.++.+   +  .|++||+.+++..... . +.. +.++.|+|||+.|+.++.+                   
T Consensus        70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             ---CCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence               6667666643   3  3888899888765333 2 223 9999999999998887643                   


Q ss_pred             --------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C--------eEEEEECCCCeeeEEeecCCCC
Q 008041          139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA  201 (579)
Q Consensus       139 --------~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~--------~i~vwd~~~~~~~~~~~~h~~~  201 (579)
                              ..|++||+.+++.+..+.. . .+..++|+||| +++++. .        ...+|.+.+++. ..+..+ ..
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~  218 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS  218 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred             cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence                    5799999988877455554 4 78899999999 777663 1        234443335543 444444 55


Q ss_pred             EEEEEEecCCCEEEEEecCC-------CeEEEEEcCCCccccceeeeeeecCceeEEe-EEecCCcccCCCcEEEEEEcC
Q 008041          202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       202 v~~l~~s~~~~~l~s~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d  273 (579)
                      +..+  +|||++|+..+..+       ..|.+||  +++..     .........+.. ..|+      ++ .+++++.+
T Consensus       219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-----~l~~~~~~~~~~~~~~s------dg-~~~~~~~~  282 (347)
T 2gop_A          219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-----GILDEVDRGVGQAKIKD------GK-VYFTLFEE  282 (347)
T ss_dssp             EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-----ESSTTCCSEEEEEEEET------TE-EEEEEEET
T ss_pred             eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-----eccccCCcccCCccEEc------Cc-EEEEEecC
Confidence            5554  99999888776322       3677787  33311     112222333442 5553      66 88888999


Q ss_pred             CeEEEEEcCC
Q 008041          274 GVCYIWYGQN  283 (579)
Q Consensus       274 g~i~iwd~~~  283 (579)
                      |.+++| +.+
T Consensus       283 ~~~~l~-~~~  291 (347)
T 2gop_A          283 GSVNLY-IWD  291 (347)
T ss_dssp             TEEEEE-EES
T ss_pred             CcEEEE-EcC
Confidence            999999 763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=4.3e-12  Score=124.65  Aligned_cols=224  Identities=13%  Similarity=0.115  Sum_probs=146.6

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|+|+|++++++..++.|.+||..+++.......+..                  .+.++.|.+.         +.++
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~~~~i~~~~d---------g~l~  101 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA------------------NPAAIKIHKD---------GRLF  101 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS------------------SEEEEEECTT---------SCEE
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCC------------------CcceEEECCC---------CcEE
Confidence            458999999888888899999999988876554322222                  2233444332         5555


Q ss_pred             EEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecC
Q 008041           90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        90 ~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~  158 (579)
                      ++...+    +.|.+||..++.....+. ..+...+.++.++|+|+.+++...      .+.|..+|..+++... +...
T Consensus       102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  180 (333)
T 2dg1_A          102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN  180 (333)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred             EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence            555555    589999998877642222 234567999999999987776653      3567777766554433 3233


Q ss_pred             CCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE--------eecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~~~~--------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      ...+..++|+|+|+.++.+.   +.|++||..+ ++.+..        +.++ ..+..++++++|+.+++.. .++.|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence            34678999999998665543   7999999964 333221        1222 4678899999998777665 5789999


Q ss_pred             EEcCCCccccceeeeeeecCce------eEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          227 WRTDGVKKQSASCVLAMEHPAV------FMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                      ||.. ++..     ..+..+..      ....++|+     |++..|++++.+|
T Consensus       259 ~d~~-g~~~-----~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g  301 (333)
T 2dg1_A          259 FNKR-GYPI-----GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI  301 (333)
T ss_dssp             ECTT-SCEE-----EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred             ECCC-CCEE-----EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence            9984 3321     22222221      34566676     8887777666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=1.4e-12  Score=127.89  Aligned_cols=234  Identities=9%  Similarity=0.044  Sum_probs=159.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++ +++.+++...++.|.+||..+++.+.++... ..+                  ..+.+.+.         + .+++
T Consensus        50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~p------------------~~i~~~~~---------g-~lyv   99 (328)
T 3dsm_A           50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TSP------------------RYIHFLSD---------E-KAYV   99 (328)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SSE------------------EEEEEEET---------T-EEEE
T ss_pred             EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CCC------------------cEEEEeCC---------C-eEEE
Confidence            553 3445555556799999999999998877421 111                  12333221         4 4566


Q ss_pred             EE-CCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        92 ~~-~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +. .++.|.+||+.+++....+..+.    ......+++  ++..++.+.  .++.|.+||+.+++.+..+... .....
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~  176 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS  176 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence            66 78999999999999876553322    114566777  345555555  4889999999999988887653 35678


Q ss_pred             EEEccCCCEEEEECC------------eEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       165 l~~~p~g~~l~~~~~------------~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ++++|+|++++++.+            .|.+||..+++....+... ......++|+|++++++++.   +.|.+||..+
T Consensus       177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t  253 (328)
T 3dsm_A          177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEA  253 (328)
T ss_dssp             CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES---SSEEEEETTC
T ss_pred             eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc---cEEEEEECCC
Confidence            999999998777652            6999999999887776532 23678999999999888764   2899999988


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCC-CcEEEEE----EcCCeEEEEEcCCceeeccc
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAI----SETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~----~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ++.... .  ...........+.++     |+ +...++.    ..++.|.+||.. ++.+..+
T Consensus       254 ~~~~~~-~--~~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          254 DRVPVR-P--FLEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             SSCCSS-C--SBCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             Cceeee-e--eecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            764210 1  111112345566776     74 5555554    468899999988 7766544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=1.9e-13  Score=147.89  Aligned_cols=238  Identities=11%  Similarity=0.028  Sum_probs=149.0

Q ss_pred             EEc--cCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        12 ~fs--pdg~~-lasg~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .|+  |||++ |+.++. +..|.+|+..  + +. ...+.....             .........+.|.|.        
T Consensus        83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD--------  140 (662)
T 3azo_A           83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE--------  140 (662)
T ss_dssp             EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred             eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence            455  99998 887664 5667777765  2 43 233332100             000122334556553        


Q ss_pred             CCcEEEEEECC----------CeEEEEEccC------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--------c
Q 008041           85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------M  140 (579)
Q Consensus        85 ~~~~l~~~~~~----------g~i~iwd~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--------~  140 (579)
                       ++.|++++.+          ..|++||+.+      ++.. .+...+...+..++|+|||++|+.++.++        .
T Consensus       141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence             6678777766          5799999988      5543 34314556788999999999998877553        7


Q ss_pred             EEEEeCC-CC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--C--eEEEEECCCCeeeEEeecCCCC--------EEE
Q 008041          141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF  204 (579)
Q Consensus       141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~--~i~vwd~~~~~~~~~~~~h~~~--------v~~  204 (579)
                      |++||+. ++   +.......+...+..++|+|||+++++++  +  .|++||+.+++.......+...        +..
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            9999998 56   44444455577899999999999777776  4  7888887777654333333222        567


Q ss_pred             EEEecCCCEEEEEecCCCeEEEE--EcCCCccccceeeeeeecCceeEEeE-EecCCcccCCCcEEEEEEcCC--eEEEE
Q 008041          205 MTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCR-CIDNGGVDDAGLYVLAISETG--VCYIW  279 (579)
Q Consensus       205 l~~s~~~~~l~s~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg--~i~iw  279 (579)
                      ++|+|++++++++. . +.+++|  |+.+++.      ..+..+...+..+ .++     ++...+++++.+.  .|++|
T Consensus       299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          299 FAPLANGLIAVVHG-K-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVS-----GTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             EEECTTSCEEEEEB-S-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEE
T ss_pred             EeEeCCCEEEEEEE-c-CccEEEEEECCCCcE------EEecCCCCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEE
Confidence            89999999888876 6 888898  5444432      2333333333433 332     2323333444454  56666


Q ss_pred             EcCCcee
Q 008041          280 YGQNIEE  286 (579)
Q Consensus       280 d~~~~~~  286 (579)
                      |..+++.
T Consensus       366 d~~~g~~  372 (662)
T 3azo_A          366 DTVTGRA  372 (662)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCce
Confidence            7666653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=2.2e-12  Score=140.59  Aligned_cols=193  Identities=9%  Similarity=-0.008  Sum_probs=132.7

Q ss_pred             CcEEEEEECC-C----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc----------------EEEE
Q 008041           86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM----------------VCEI  144 (579)
Q Consensus        86 ~~~l~~~~~~-g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~----------------v~iw  144 (579)
                      +..|+.+... |    .|++||+.+++........  ..+.+++|+|||+.|+.++.++.                |++|
T Consensus       136 g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~  213 (710)
T 2xdw_A          136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (710)
T ss_dssp             SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence            6667766554 3    7999999999876543322  22678999999999999888766                9999


Q ss_pred             eCCCCce--eeEeec--CCCCeeEEEEccCCCEEEEEC-------CeEEEEECCC------Ce-eeEEeecCCCCEEEEE
Q 008041          145 DPLTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------HK-KMQKFSGHPGAVRFMT  206 (579)
Q Consensus       145 d~~~~~~--~~~~~~--~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~------~~-~~~~~~~h~~~v~~l~  206 (579)
                      ++.+++.  ...+..  +...+..+.|+|||++|+.+.       ..|++||+.+      +. ....+..+...+.. .
T Consensus       214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~  292 (710)
T 2xdw_A          214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y  292 (710)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred             ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence            9988763  222333  345678999999999888764       3799999986      43 45667767666655 5


Q ss_pred             EecCCCEEEEEecCC---CeEEEEEcCCCccccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCCe--EEEEE
Q 008041          207 FSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWY  280 (579)
Q Consensus       207 ~s~~~~~l~s~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd  280 (579)
                      |+|+|+.|+..+..+   ..|.+||+.++.......  ...+.. ..+..+.+.     +++.++++...||.  |++|+
T Consensus       293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~~~~~-----~~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACV-----RSNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCEEEEEEEE-----TTTEEEEEEEETTEEEEEEEE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee--ccCCCCCCeEEEEEEE-----cCCEEEEEEEECCEEEEEEEE
Confidence            889999887776333   369999998764211111  122323 355556665     67788888888884  56677


Q ss_pred             cCCceeec
Q 008041          281 GQNIEELR  288 (579)
Q Consensus       281 ~~~~~~~~  288 (579)
                      +.+++.+.
T Consensus       366 ~~~g~~~~  373 (710)
T 2xdw_A          366 LATGALLK  373 (710)
T ss_dssp             TTTCCEEE
T ss_pred             CCCCCEEE
Confidence            76665443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=6.6e-13  Score=131.28  Aligned_cols=218  Identities=10%  Similarity=0.023  Sum_probs=140.2

Q ss_pred             eEEEEccCCCEEEEEeCC---C--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|||||++||+++.+   +  .|.+||+.+++.........                    +..+.|.|.       
T Consensus        62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------------~~~~~wspd-------  114 (347)
T 2gop_A           62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--------------------IRSLEWNED-------  114 (347)
T ss_dssp             EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--------------------EEEEEECTT-------
T ss_pred             CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--------------------ccceeECCC-------
Confidence            345999999999988754   3  37888998887655433211                    334455443       


Q ss_pred             cCCcEEEEEEC---------------------------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe
Q 008041           84 LGSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG  136 (579)
Q Consensus        84 ~~~~~l~~~~~---------------------------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~  136 (579)
                        +..|+.++.                           ...|++||+.+++.+..+..  . .+..+.|+||| .+++++
T Consensus       115 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          115 --SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             --SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred             --CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence              555665553                           25699999999887434433  2 78899999999 777776


Q ss_pred             CCC-------cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCC
Q 008041          137 ADG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHP  199 (579)
Q Consensus       137 ~d~-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~~~~~~~~~~~h~  199 (579)
                      .++       ...+|.+.+++. ..+..+ ..+..+  +|||+.++.++          ..|++||  +++......+|.
T Consensus       189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~  262 (347)
T 2gop_A          189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD  262 (347)
T ss_dssp             CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred             cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence            542       334443335544 334334 455444  99999887654          2688888  555444445567


Q ss_pred             CCEEE-EEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeE-E
Q 008041          200 GAVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-Y  277 (579)
Q Consensus       200 ~~v~~-l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-~  277 (579)
                      ..+.. +.|+ ++ .+++++ .++.+++| +.+++.     .....+ ...+..+.++     |  ..+++++.++.. .
T Consensus       263 ~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~  325 (347)
T 2gop_A          263 RGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLRE  325 (347)
T ss_dssp             SEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCE
T ss_pred             cccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHH
Confidence            77886 8999 88 777766 68999999 874321     122223 4455666776     6  677777777654 6


Q ss_pred             EEEcC
Q 008041          278 IWYGQ  282 (579)
Q Consensus       278 iwd~~  282 (579)
                      +|.++
T Consensus       326 l~~~~  330 (347)
T 2gop_A          326 LFTWD  330 (347)
T ss_dssp             EEEES
T ss_pred             heEeC
Confidence            77664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=1.6e-12  Score=123.83  Aligned_cols=188  Identities=12%  Similarity=0.124  Sum_probs=145.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~  164 (579)
                      +++|++++.++.|.+||..+|+.++++..+....+.++.+.|+|+.++  +.++.|+.||. +|+.+..+..+. ..+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            678999999999999999999999888543225789999999999888  45788999998 899999988753 47889


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      +.+.|+|+++++.+   +.|..+|. +++.+.++..      +......+.+.++|+++++.. .++.|..||.. ++..
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence            99999999999875   46666664 7777777642      223455678899999998876 79999999988 6633


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                           ........... ....     ++|..+++++.+++|..||.++++.+...
T Consensus       159 -----w~~~~~~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          159 -----NSVKLSGTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             -----EEEECSSCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             -----EEEECCCCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence                 33333322222 3344     89999999888889999999999887554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=8.4e-12  Score=130.58  Aligned_cols=192  Identities=14%  Similarity=0.112  Sum_probs=148.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~  163 (579)
                      +.++++...++.|.++|..+++.+.++..  ...+..+.|+|||+++++++.|+.|.+||+.  +++.+..+... ....
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~  243 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR  243 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence            34566666778999999999999877743  3457899999999999999999999999995  78888887753 3468


Q ss_pred             EEEEc----cCCCEEEEEC---CeEEEEECCCCeeeEEeec----------CC-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HP-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       164 ~l~~~----p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~----------h~-~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      .++|+    |||++++++.   ++|.++|..+.+.+.++..          |. ..+..+.+++++..++.....+|.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            99999    7999999887   8999999999998877652          11 25788899998877666666789999


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecc
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~  289 (579)
                      ++|....+..   .+..+.. ........|+     |+|+++++++ .+++|.++|..+++.+..
T Consensus       324 ~vd~~~~~~~---~v~~i~~-~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~  379 (567)
T 1qks_A          324 LVDYTDLNNL---KTTEISA-ERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAI  379 (567)
T ss_dssp             EEETTCSSEE---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEecCCCccc---eeeeeec-cccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence            9998876422   1222222 2334455676     9999987776 488999999999886543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=9.5e-12  Score=120.03  Aligned_cols=189  Identities=8%  Similarity=-0.018  Sum_probs=131.6

Q ss_pred             ceEEeeecccccccccCCc-EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           69 TCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~-~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                      ....|.+.         ++ ++++++.++.|+.||..++  ...+ ..+...+.+++++|+|+.+++...++.|.+||..
T Consensus        31 eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           31 EGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             cCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            35666654         44 7888888999999999988  3333 3466789999999999987777667899999998


Q ss_pred             CCceeeEeecC----CCCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEE
Q 008041          148 TGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (579)
Q Consensus       148 ~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-------------------~~i~vwd~~~~~~~~~~~~h~~~v~~  204 (579)
                      +++........    ...+..++++|+|+++++..                   +.|+.++.. ++ +..+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence            88754433221    13567899999999888621                   356666654 43 4455566777899


Q ss_pred             EEEecCCCEEEEEecCCCeEEEEEcC-CCcc-ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          205 MTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       205 l~~s~~~~~l~s~~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ++|+|+++.+++. ..++.|.+|++. .+.. . ....+  .........++++     ++|++.++.  ++.|.+||.+
T Consensus       177 i~~s~dg~~lv~~-~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          177 LAFLPSGNLLVSD-TGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEECTTSCEEEEE-TTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECTT
T ss_pred             EEECCCCCEEEEe-CCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECCC
Confidence            9999999988544 468899999997 3332 1 01122  2222334556676     888866655  7889999864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=1.3e-12  Score=141.97  Aligned_cols=236  Identities=9%  Similarity=-0.004  Sum_probs=151.2

Q ss_pred             eEEEEccCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAIC-----SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|||||++||.+     +.+..|++||+.+|+...  ..+..                ......+.|.+.       
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~----------------~~~~~~~~wspD-------  178 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIE----------------GGKYATPKWTPD-------  178 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBS----------------CCTTCCCEECTT-------
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccC----------------cccccceEEecC-------
Confidence            455999999999943     345689999999987531  10000                001134566654       


Q ss_pred             cCCcEEEEEECCCe-------------EEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEE
Q 008041           84 LGSSLLVLGTGGGD-------------VLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVC  142 (579)
Q Consensus        84 ~~~~~l~~~~~~g~-------------i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~----~v~  142 (579)
                        +..|+.++.+..             |++|++.++.    ++.. ...|...+.++.|+|||++++.++.++    .|+
T Consensus       179 --g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          179 --SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY  255 (695)
T ss_dssp             --SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred             --CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence              667888877655             9999998876    2222 234556899999999999988877666    677


Q ss_pred             EEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee--eEEeecC--CCCEEEEEEecCCCE
Q 008041          143 EIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKFSGH--PGAVRFMTFSDNGKY  213 (579)
Q Consensus       143 iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~--~~~~~~h--~~~v~~l~~s~~~~~  213 (579)
                      +||..+++ ...+..+...+....+ |+|.+++.+.     +.|.+||+.+++.  ...+..|  ...+..+.|+ ++..
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l  332 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL  332 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence            78765554 3445555556666666 5666545443     5899999987753  2334333  4567888888 5556


Q ss_pred             EEEEecCCCeEEEEEcCC-CccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEE----cCCeEEEEEcCCcee
Q 008041          214 VLSSAVGERYIALWRTDG-VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS----ETGVCYIWYGQNIEE  286 (579)
Q Consensus       214 l~s~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~  286 (579)
                      +++.. .|+..++|.+.. ++.     ...+..+ ...+..+.++     |++..++...    ..++|++||+.+++.
T Consensus       333 v~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          333 SLEYL-KDATSEVRVATLKGKP-----VRTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEE-ETTEEEEEEEETTCCE-----EEECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEE-ECCEEEEEEEeCCCCe-----eEEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66655 688888886652 221     1222222 3334444454     7887766433    357899999988753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=3.3e-12  Score=138.80  Aligned_cols=236  Identities=10%  Similarity=-0.006  Sum_probs=146.3

Q ss_pred             EccCCCEEEEEeCCC---cEEEE--ECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        13 fspdg~~lasg~~dg---~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+|+|++++....++   .-.+|  +...+.....+.. .          .+..+| ........|.|.         +.
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~-~----------~~a~~~-~~~~~~~~~SPD---------G~  133 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDP-N----------GWSKDG-TVSLGTWAVSWD---------GK  133 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECG-G----------GSSSSS-CEEEEEEEECTT---------SS
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEch-H----------HhccCC-CEEEEEEEECCC---------CC
Confidence            458999998877643   33444  4444443222211 0          001122 123445556543         56


Q ss_pred             EEEEEEC-C----CeEEEEEccCCeEEEEecCCCCCCE--EEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008041           88 LLVLGTG-G----GDVLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAGADGM-------------VCEIDPL  147 (579)
Q Consensus        88 ~l~~~~~-~----g~i~iwd~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~d~~-------------v~iwd~~  147 (579)
                      +|+.+.. +    ..|++||+.+++.+.   ..+...+  .+++|+|||+.|+.++.|..             |++|++.
T Consensus       134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~  210 (695)
T 2bkl_A          134 KVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG  210 (695)
T ss_dssp             EEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT
T ss_pred             EEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC
Confidence            6664332 3    469999999998641   1122222  68899999999999988776             9999998


Q ss_pred             CCc----eeeEeecCCCCeeEEEEccCCCEEEEEC--C----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041          148 TGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       148 ~~~----~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  217 (579)
                      ++.    .+.....+...+.++.|+|||++++.+.  +    .|++|+..+++ ...+..+...+....+ ++|. ++..
T Consensus       211 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~  287 (695)
T 2bkl_A          211 TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVL  287 (695)
T ss_dssp             SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEE
T ss_pred             CCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEE
Confidence            876    2223333445788999999999888765  4    77888766554 4455556666666666 6666 5555


Q ss_pred             ec---CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          218 AV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       218 ~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      +.   .++.|.+||+.+++......+ ...++...+..+.+.      ++..+++...||..++|...
T Consensus       288 s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          288 TDEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             ECTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred             ECCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence            43   247899999977643111111 112224445555554      56788888999988888654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.49  E-value=1.8e-11  Score=119.02  Aligned_cols=237  Identities=14%  Similarity=0.119  Sum_probs=154.2

Q ss_pred             EEEEccCCCEEEE-------EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041           10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        10 ~~~fspdg~~las-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|+++|+++++       +..++.|.+||..+++....... .            ..++ ......+.+.+.      
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~------------~~~~-~~~~~~i~~~~~------   81 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-E------------VNGY-GGIPAGCQCDRD------   81 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-E------------ETTE-ECCEEEEEECSS------
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-c------------cCCC-CCCCceEEEecC------
Confidence            4589999988887       56788999999888876432110 0            0001 112233444332      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCC----CCCCEEEEEEccCCCEEEEEeCC---------------CcEEE
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD---------------GMVCE  143 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~----h~~~V~~l~~~~~~~~l~s~~~d---------------~~v~i  143 (579)
                         +..+++++..+.|.+||.. ++........    ....+.+++++++|+.+++...+               +.|..
T Consensus        82 ---~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           82 ---ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             ---SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             ---CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence               1456777766689999998 7654220211    12358899999999877776555               57888


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEc----cCCCEEEEE-C--CeEEEEECC-CCe-----eeEEeecCC-CCEEEEEEec
Q 008041          144 IDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFSD  209 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~----p~g~~l~~~-~--~~i~vwd~~-~~~-----~~~~~~~h~-~~v~~l~~s~  209 (579)
                      ||.. ++..... .+......++++    |+|+.++.+ .  +.|++||.. +++     ....+.++. ..+..+++++
T Consensus       158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            8865 5543332 233456889999    999765554 3  799999986 454     233344443 5678899999


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  283 (579)
                      +|+.+++.. .++.|.+||..+++..     .....+......+.++     |+++.|++++ .++.|..|+...
T Consensus       236 ~G~l~v~~~-~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 DNNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEc-CCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence            998877765 5789999998865432     1223333445666676     8999665554 568999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=2.1e-11  Score=119.51  Aligned_cols=223  Identities=10%  Similarity=0.022  Sum_probs=151.4

Q ss_pred             CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008041           25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS  104 (579)
Q Consensus        25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~  104 (579)
                      .++.|.+||..+++....+.....   .         ..+......+...          ++.+.++...++.|.+||..
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n---~---------~~lg~~~~~i~~~----------~~~lyv~~~~~~~v~viD~~   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRAN---G---------FKLGDVAQSMVIR----------DGIGWIVVNNSHVIFAIDIN   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHH---S---------SCCBSCEEEEEEE----------TTEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEECCCCEEhhhhHhhhc---C---------cccCccceEEEEE----------CCEEEEEEcCCCEEEEEECc
Confidence            478999999999987654321000   0         0001111122221          14445555567889999999


Q ss_pred             CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCC-----CCeeEEEEccCCCEEEEE-
Q 008041          105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA-  177 (579)
Q Consensus       105 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~g~~l~~~-  177 (579)
                      +++.+.++.  .......+++++++ .++.+. .++.|.+||..+++....+....     .....+++ .+++++++. 
T Consensus        73 t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           73 TFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             TCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             ccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence            999987773  34678999999998 455554 79999999999998887776433     14567777 455555554 


Q ss_pred             --CCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeeeeeec
Q 008041          178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       178 --~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                        ++.|.+||..+++.+.++.... ....+.++|+|++++++. .+          +.|.+||..+.+..   .......
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~  223 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL  223 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred             CCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence              2789999999999888876433 457889999998766654 44          78999999887533   1122211


Q ss_pred             CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                       ......++++     |++++|+++..  .|.+||..+++.
T Consensus       224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred             -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence             1234567776     89999888765  899999877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.44  E-value=2.1e-10  Score=110.28  Aligned_cols=231  Identities=8%  Similarity=-0.027  Sum_probs=153.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+++++++|+++++...++.|.+||.. +...... .....                  ....+.+.+.         +.
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~------------------~~~~i~~~~~---------g~   69 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDA------------------KVMCLTISSD---------GE   69 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTC------------------CEEEEEECTT---------SC
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccC------------------ceeeEEECCC---------CC
Confidence            455999999987776667899999988 6543221 11111                  1222333221         55


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA  166 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~  166 (579)
                      +.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||. +++.... .......+.+++
T Consensus        70 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           70 VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT  147 (299)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence            55555557889999986 44322222234567999999999987777777889999998 5654432 222345789999


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      ++|+|+++++..  +.|..||. +++.... +..+...+..++++++|+.+++.. .++.|.+|+. +++..    ....
T Consensus       148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~  220 (299)
T 2z2n_A          148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----EFKI  220 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEEC
T ss_pred             EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----EEEC
Confidence            999998888775  79999998 6654432 333456688999999998766553 5789999998 54422    1222


Q ss_pred             ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .........+.++     ++|...++...++.|..||.
T Consensus       221 ~~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          221 PTPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             SSTTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred             CCCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence            2233445566676     88886665557889999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.43  E-value=1.6e-10  Score=111.47  Aligned_cols=198  Identities=17%  Similarity=0.156  Sum_probs=131.4

Q ss_pred             eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008041           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~  149 (579)
                      ...|.+.+        +.++++...++.|+.||..+++.. .+  .....+.+++++++|++++ +. ++.|.+||..++
T Consensus        17 gp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           17 SPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQ   83 (297)
T ss_dssp             EEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTT
T ss_pred             CCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCC
Confidence            55666543        556777777889999999988763 22  2446799999999999544 44 567999999877


Q ss_pred             ceeeEeecC----CCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC
Q 008041          150 SLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       150 ~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~  212 (579)
                      +........    ...++.++++|+|+++++..             +.|+.++.. ++. ..+..+....+.++|+|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSC
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCC
Confidence            654333221    23578899999999777652             244444432 333 23333445568999999999


Q ss_pred             EEEEEecCCCeEEEEEcC--CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          213 YVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       213 ~l~s~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      .++.+...++.|.+|++.  ++..........+.........++++     ++|++.++....+.|..||.++++.+
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            877666567899999974  44321111222222223345666776     88987777777889999998777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.41  E-value=3.9e-11  Score=131.30  Aligned_cols=235  Identities=11%  Similarity=0.029  Sum_probs=147.6

Q ss_pred             EEEEccCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           10 LTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fspdg~~lasg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      ..+|||||++||.++.+     ..|++||+.+|+.+.... .                  ......+.|.+.        
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~------------------~~~~~~~~wspD--------  219 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K------------------WVKFSGLAWLGN--------  219 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E------------------EEESCCCEESTT--------
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-C------------------CceeccEEEECC--------
Confidence            45999999999987653     359999999998754311 0                  001234556553        


Q ss_pred             CCcEEEEEECCC--------------eEEEEEccCCeE--EEEe-cCCCCCCEEEEEEccCCCEEEEEeCCC-----cEE
Q 008041           85 GSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MVC  142 (579)
Q Consensus        85 ~~~~l~~~~~~g--------------~i~iwd~~~~~~--~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~-----~v~  142 (579)
                        ..|+.++.++              .|++|++.++..  ...+ ...+...+.++.|+|||++++..+.++     .|+
T Consensus       220 --~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          220 --DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             --SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             --CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence              2355555443              399999987652  1111 123334589999999999988777544     899


Q ss_pred             EEeCCCC--ceeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCC--eeeEEeecCCCCEEEEEEecCCC
Q 008041          143 EIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       143 iwd~~~~--~~~~~~~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~  212 (579)
                      +||+.++  +....+..+...+... ++|+|+.|+..+      +.|++||+.++  +....+..+...+..+.++ ++.
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~  375 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR  375 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred             EEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence            9999877  3145555555555554 348888877664      46999999875  3333445555566677777 444


Q ss_pred             EEEEEecCCCeEEEEEcC-CCccccceeeeeeec-CceeEEeEEecCCcccCCCcEEEEE-E---cCCeEEEEEcCCcee
Q 008041          213 YVLSSAVGERYIALWRTD-GVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIEE  286 (579)
Q Consensus       213 ~l~s~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~  286 (579)
                      .+++.. .|+..++|.+. .++.     ...+.. ....+..+.++     |++..|+.. +   ..++|++||+.+++.
T Consensus       376 lv~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          376 LFASYI-HDAKSQVLAFDLDGKP-----AGAVSLPGIGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEE-ETTEEEEEEEETTSCE-----EEECBCSSSCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEE-ECCEEEEEEEeCCCCc-----eeeccCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            555554 68887777654 2221     122322 23344555665     777755533 2   357999999988763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.40  E-value=4.9e-10  Score=107.71  Aligned_cols=233  Identities=8%  Similarity=0.024  Sum_probs=147.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++++|+++++...++.|..||.. ++. ..+....               . ......+.+.+.         +.+
T Consensus        60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---------------~-~~~~~~i~~~~~---------g~l  112 (299)
T 2z2n_A           60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN---------------P-DSAPYGITEGPN---------GDI  112 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred             eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---------------c-CCCceeeEECCC---------CCE
Confidence            445899999988877768889999976 443 2222100               0 011122333221         455


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|.+||. +++........+...+.++++.++|+.+++...++.|..||. +++.... .......+.++++
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  190 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK  190 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence            555556788999998 665543333345567999999999987777666789999998 6665432 2333457889999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +++|+++++..  +.|.+||. +++.... ...+...+.+++++++|+.+++.. .++.|..||.. +...    .+...
T Consensus       191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~  263 (299)
T 2z2n_A          191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQ  263 (299)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECS
T ss_pred             CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCC
Confidence            99999877774  79999998 6654322 233456789999999998666543 57899999983 3211    12222


Q ss_pred             cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      ........+.+      ++|...++.+ .+.+..++.++.
T Consensus       264 ~~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          264 IKSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence            22223333333      3666555544 677888876654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=4.7e-10  Score=113.14  Aligned_cols=233  Identities=11%  Similarity=0.026  Sum_probs=149.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|+|+|+++++...++.|++||..++...........                   . ++.|.+.         +..
T Consensus       134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-------------------~-~ia~~~~---------g~~  184 (409)
T 3hrp_A          134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-------------------G-KPAVTKD---------KQR  184 (409)
T ss_dssp             EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-------------------C-BCEECTT---------SSE
T ss_pred             eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-------------------C-ceeEecC---------CCc
Confidence            4569999999777777789999999998887655432110                   1 1334332         566


Q ss_pred             EEEEECCC--eEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE----eecCC
Q 008041           89 LVLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAST  159 (579)
Q Consensus        89 l~~~~~~g--~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~  159 (579)
                      ++++..++  .|.+|+...+.....+   ...+...+.+++++|++..|+.+..++.|+.||..++.....    ..++.
T Consensus       185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~  264 (409)
T 3hrp_A          185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL  264 (409)
T ss_dssp             EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred             EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence            77777765  7999998876543222   122446678999999655666677889999999887753222    12222


Q ss_pred             CC--eeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCC---------------CCEEEEEEecCCCEEEEEec
Q 008041          160 KG--ISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       160 ~~--v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~---------------~~v~~l~~s~~~~~l~s~~~  219 (579)
                      ..  ...++|+|+ +.++++-.  +.|+.|+....  +..+.++.               .....++++|+|+.+++ ..
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva-d~  341 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV-DG  341 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE-ET
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE-eC
Confidence            22  139999995 55554444  79999987643  33444432               34789999999985554 44


Q ss_pred             -CCCeEEEEEcCCCccccceeeeeeec------------CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          220 -GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       220 -~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                       .++.|+.|++..+...   .+.....            .-.....++++     ++|.++++-..+++|+.+++
T Consensus       342 ~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 FKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence             5789999997666422   1111000            01224556666     77777777777788887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.38  E-value=9.5e-10  Score=109.29  Aligned_cols=241  Identities=12%  Similarity=0.072  Sum_probs=152.5

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++|||||++++.+.          .++.|.+||..+++.+.++.......           .........+.|.+.    
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-----------~~~g~~p~~~~~spD----  135 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----------FDVGPYSWMNANTPN----  135 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-----------cccCCCccceEECCC----
Confidence            48999999998876          36789999999988887764320000           000001112333332    


Q ss_pred             ccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                           +++++++..  ++.|.++| .+++.+.. +..  ..   ++.+.|+++ .+++.+.||.+..+|. +++......
T Consensus       136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence                 677888774  47799999 99988766 421  12   244556553 4667778999999999 887764322


Q ss_pred             -----cCCCC-eeEEEEccCCCEEE-EEC-CeEEEEECCCCe--eeEEeec----------CCCCEEEEEEecCCCEEEE
Q 008041          157 -----ASTKG-ISCMAVSSDGKMLA-TAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       157 -----~~~~~-v~~l~~~p~g~~l~-~~~-~~i~vwd~~~~~--~~~~~~~----------h~~~v~~l~~s~~~~~l~s  216 (579)
                           ....+ .....+.+++..++ ... +.+.+.|+.++.  .+..+.-          .......+.++|+++.+++
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence                 11122 12345666655433 333 899999987652  2233321          1223445789999988877


Q ss_pred             Eec---------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEE-cCCeEEEEEcCCce
Q 008041          217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       217 ~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~  285 (579)
                      +..         .++.|.++|+.+.+..     ..+.... ....+.++     |||+ .++++. .++.|.+||..+++
T Consensus       284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~~i~~g~-~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EeccCCcccccCCCCeEEEEECCCCEEE-----EEEECCC-CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            642         1357999999887643     2333222 23456666     9999 777777 48999999999998


Q ss_pred             eecc
Q 008041          286 ELRN  289 (579)
Q Consensus       286 ~~~~  289 (579)
                      .+..
T Consensus       353 vv~~  356 (373)
T 2mad_H          353 QDQS  356 (373)
T ss_pred             EEee
Confidence            8755

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=1.6e-09  Score=107.64  Aligned_cols=186  Identities=8%  Similarity=-0.103  Sum_probs=123.3

Q ss_pred             EEccCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041           12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        12 ~fspdg~~lasg~~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ...|+++++.....  ..   +|.+||..+++.+.++.....+  .+.++++                           +
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD---------------------------g   77 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS---------------------------G   77 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC---------------------------C
Confidence            45688887776653  22   8899999999988776533221  4444444                           6


Q ss_pred             cEEEEEE----------CCCeEEEEEccCCeEEEEecCC------CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCC
Q 008041           87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT  148 (579)
Q Consensus        87 ~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~  148 (579)
                      ..++++.          .++.|.+||+.+.+.+.++.-+      +......+.|+|||+++++++.  ++.|.++| .+
T Consensus        78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence            6777775          3577999999998877655322      0123568999999999998874  57899999 99


Q ss_pred             CceeeE-eecCCCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEee-----cCCCCE-EEEEEecCCCEEEEEe
Q 008041          149 GSLLGK-FRASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFS-----GHPGAV-RFMTFSDNGKYVLSSA  218 (579)
Q Consensus       149 ~~~~~~-~~~~~~~v~~l~~~p~g~~-l~~~~--~~i~vwd~~~~~~~~~~~-----~h~~~v-~~l~~s~~~~~l~s~~  218 (579)
                      ++.+.. +....    |+.+.|+++. +++..  |.+.++|. +++.+....     ....++ ....+.+++..++..+
T Consensus       157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  231 (373)
T 2mad_H          157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV  231 (373)
T ss_pred             CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence            988877 65322    3556666643 23332  89999999 877663321     112222 2346677766555544


Q ss_pred             cCCCeEEEEEcCCCc
Q 008041          219 VGERYIALWRTDGVK  233 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~  233 (579)
                       .++.+.+.|+....
T Consensus       232 -~~~~v~vid~~~~~  245 (373)
T 2mad_H          232 -YSGKILQADISAAG  245 (373)
T ss_pred             -CCceEEEEeccCCc
Confidence             57889999987653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=7e-11  Score=129.23  Aligned_cols=184  Identities=12%  Similarity=0.016  Sum_probs=120.7

Q ss_pred             CcEEEEEECC-C----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc--------------EEEEeC
Q 008041           86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--------------VCEIDP  146 (579)
Q Consensus        86 ~~~l~~~~~~-g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~--------------v~iwd~  146 (579)
                      ++.|+.+..+ |    .|++||+.+++.+....  +...+.+++|+|| +.|+.++.|+.              |++|++
T Consensus       174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l  250 (741)
T 1yr2_A          174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL  250 (741)
T ss_dssp             SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence            6667666543 3    59999999998764321  1112357899999 98888876654              899999


Q ss_pred             CCCce--eeEeec--CCCCeeEEEEccCCCEEEEEC--C-----eEEEEECCCC--eeeEEeecCCCCEEEEEEecCCCE
Q 008041          147 LTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       147 ~~~~~--~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~-----~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~  213 (579)
                      .++..  ...+..  +...+..+.|+|||++++...  +     .|++||+.++  +....+..+...+.... +|+|+.
T Consensus       251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~  329 (741)
T 1yr2_A          251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ  329 (741)
T ss_dssp             TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred             CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence            87752  223333  223588999999999887765  2     8999999887  31455665655555553 488888


Q ss_pred             EEEEecC---CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          214 VLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       214 l~s~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      |+..+..   ++.|.+|++.+.. ..  ......+....+..+.+.      ++..+++...||..++|..+
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence            8877632   3459999987742 10  111223344445444553      55778888889987777543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=1e-10  Score=126.77  Aligned_cols=233  Identities=12%  Similarity=0.055  Sum_probs=149.3

Q ss_pred             EEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           10 LTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fspdg~~lasg~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++|||||++||.+.     .+..|+|||+.+|+.+.... .                  ......+.|. .        
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~------------------~~k~~~~~Ws-D--------  184 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-K------------------DVKFSGISWL-G--------  184 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E------------------EEESCCCEEE-T--------
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-C------------------CceeccEEEe-C--------
Confidence            348999999999643     23579999999998654210 0                  0012344565 3        


Q ss_pred             CCcEEEEEECCC-------------eEEEEEccCCeE----EEEecCC-CCCCEEEEEEccCCCEEEEEeC----CCcEE
Q 008041           85 GSSLLVLGTGGG-------------DVLALAVSAGQL----KWRLSDC-HPGGVSAISFATHGSCIYSAGA----DGMVC  142 (579)
Q Consensus        85 ~~~~l~~~~~~g-------------~i~iwd~~~~~~----~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~----d~~v~  142 (579)
                       +..|+.++.+.             .|++|++.++..    +... .. |...+.++.|+|||++++....    +..|+
T Consensus       185 -g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          185 -NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY  262 (693)
T ss_dssp             -TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred             -CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence             55577776663             399999987642    2111 23 4556789999999998754432    35899


Q ss_pred             EEeCCCCc-eeeEeecCCCCeeEEEEccCCCEEEE-EC-----CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCE
Q 008041          143 EIDPLTGS-LLGKFRASTKGISCMAVSSDGKMLAT-AA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       143 iwd~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~~-~~-----~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~  213 (579)
                      ++|+.++. ....+..+....... ++++|..|+. +.     +.|..+|+.++..  ...+..|...+.  .|++++++
T Consensus       263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY  339 (693)
T ss_dssp             EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred             EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence            99998764 445566566555554 6666665554 33     5799999988754  355666766655  89999998


Q ss_pred             EEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC----CeEEEEEcCCce
Q 008041          214 VLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIE  285 (579)
Q Consensus       214 l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~  285 (579)
                      |+.....++  .|++|++..+...    ...+.... .+....++     +++..++....+    ++++.||+.+++
T Consensus       340 lv~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~-~~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          340 LFAEYMVDATARVEQFDYEGKRVR----EVALPGLG-SVSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEEEETTEEEEEEECTTSCEEE----EECCSSSS-EEEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEEECCeeEEEEEECCCCeeE----EeecCCCc-eEEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            888775555  6888888754321    11222222 23333333     677766665544    799999988765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=3.3e-10  Score=111.20  Aligned_cols=239  Identities=13%  Similarity=0.113  Sum_probs=157.5

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCc-------cccccccccccccccccccccceEEe
Q 008041           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      +++||||++++.++          .++.|.+||..+++.+.++....       .....+.++++               
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD---------------  147 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD---------------  147 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence            49999999887765          36789999999999988775321       12333444444               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cc
Q 008041           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS  150 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~  150 (579)
                                  +.+++++..  ++.|.++|+.+++.+.++.-.   .. ...+....+.+++.+.||.+.+.++.+ ++
T Consensus       148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence                        777887764  678999999999998777321   12 223333455677888999999999876 55


Q ss_pred             eeeEeecC----CCCe-eEEEEc-cCCCEEEEEC-CeEEEEECCCCe--eeEEee----------cCCCCEEEEEEecCC
Q 008041          151 LLGKFRAS----TKGI-SCMAVS-SDGKMLATAA-GQLKTFNCSDHK--KMQKFS----------GHPGAVRFMTFSDNG  211 (579)
Q Consensus       151 ~~~~~~~~----~~~v-~~l~~~-p~g~~l~~~~-~~i~vwd~~~~~--~~~~~~----------~h~~~v~~l~~s~~~  211 (579)
                      ...+...+    ..++ ....|. ++|++++... |.+++.|..++.  .+..+.          ........+++++++
T Consensus       212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence            43322111    1222 224664 7887766665 999999997653  333222          012234457889999


Q ss_pred             CEEEEEecC---------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEc-CCeEEEEE
Q 008041          212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISE-TGVCYIWY  280 (579)
Q Consensus       212 ~~l~s~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-dg~i~iwd  280 (579)
                      +.++..-..         .+.|.+.|+.+.+..     ..+.-.. ....+.++     +|++ +|++.+. ++.|.++|
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-----~~i~vg~-~~~~lavs-----~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMGH-EIDSINVS-----QDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEE-----EEEECCC-CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence            888776421         257999999998754     2222222 23445666     8986 6777654 89999999


Q ss_pred             cCCceeecccC
Q 008041          281 GQNIEELRNTK  291 (579)
Q Consensus       281 ~~~~~~~~~~~  291 (579)
                      ..+++.+...+
T Consensus       361 ~~t~k~~~~i~  371 (386)
T 3sjl_D          361 AESGEELRSVN  371 (386)
T ss_dssp             TTTCCEEEEEC
T ss_pred             CCCCcEEEEec
Confidence            99998876654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=5.4e-10  Score=108.46  Aligned_cols=191  Identities=9%  Similarity=0.075  Sum_probs=124.6

Q ss_pred             CcEEEE-------EECCCeEEEEEccCCeEEEEec---CCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~-------~~~~g~i~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                      +.++++       ++.++.|.+||..+++......   .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus        29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~  106 (314)
T 1pjx_A           29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI  106 (314)
T ss_dssp             SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred             CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence            555555       4778899999998887643221   124467999999999 65 4444445579999987 765433


Q ss_pred             -eec----CCCCeeEEEEccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEe----
Q 008041          155 -FRA----STKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS----  208 (579)
Q Consensus       155 -~~~----~~~~v~~l~~~p~g~~l~~~~-----------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s----  208 (579)
                       ...    ....+.+++++|+|+++++..                 +.|..||.. ++.. .+..+......++|+    
T Consensus       107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d  184 (314)
T 1pjx_A          107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMND  184 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTT
T ss_pred             EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccC
Confidence             221    123588999999999888775                 256677765 5443 333344556889999    


Q ss_pred             cCCCEEEEEecCCCeEEEEEcC-CCccccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       209 ~~~~~l~s~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      |+++.++.+...++.|.+|++. .++.............. .....++++     ++|+..++...++.|.+||.++++
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence            9997766665467899999986 33211111112222221 334556676     889888887788999999876553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=1.8e-09  Score=103.75  Aligned_cols=232  Identities=10%  Similarity=0.037  Sum_probs=151.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++++++|+++++...++.|.+||.. ++... +....               . ......+.+.+.         +.+
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l   75 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---------------P-DAKVMCLIVSSL---------GDI   75 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---------------C-CCcceeEEECCC---------CCE
Confidence            445899999988777678999999987 65543 21100               0 011222333221         454


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.++++
T Consensus        76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred             EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence            4544457889999988 655322223344679999999999877777668899999987 655422 2323457899999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +|+|+++++..  +.|..||. +++.... ...+...+..+.++++|..+++.. ..+.|.+|+. .++..    .....
T Consensus       154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~  226 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIP  226 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred             CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECC
Confidence            99999777765  78999998 5554331 223445688999999998766553 5678999998 33321    12222


Q ss_pred             cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      ........+.++     ++|+..++...++.|..||.
T Consensus       227 ~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          227 TPNARPHAITAG-----KNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred             CCCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence            223344566676     78886666556789999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.32  E-value=8.3e-11  Score=111.55  Aligned_cols=194  Identities=8%  Similarity=-0.024  Sum_probs=130.7

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++++++|+++++.. ++.|.+||..++... .+....                 ......+.+.+.         +.++
T Consensus        71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~-----------------~~~p~~i~~~~~---------g~l~  122 (270)
T 1rwi_B           71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDG-----------------LNYPEGLAVDTQ---------GAVY  122 (270)
T ss_dssp             CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCS-----------------CSSEEEEEECTT---------CCEE
T ss_pred             eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCC-----------------cCCCcceEECCC---------CCEE
Confidence            449999999666655 889999998765432 221100                 011223333321         5555


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p  169 (579)
                      ++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||...+........+...+.++++++
T Consensus       123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~  201 (270)
T 1rwi_B          123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE  201 (270)
T ss_dssp             EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred             EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence            55566788999976655443222 23334678999999998777766788999999876654433333336789999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +|.++++..  +.|.+||............+...+.+++++++|+.+++.. .++.|+++++...+
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence            998777775  7899999876544332223446789999999998666655 78999999987764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.31  E-value=2.3e-11  Score=120.00  Aligned_cols=183  Identities=8%  Similarity=0.077  Sum_probs=126.6

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +++.+  ++++...++++|+.+ .++||++.+.+...  ......     +.+..... ... ++.+.|   +       
T Consensus        39 ~~nlL--ais~~~gll~a~~~~-~l~v~~~~~l~~~~--~~~~~~-----~~~~~~~~-lp~-V~~l~f---d-------   96 (388)
T 1xip_A           39 SLQNL--DISNSKSLFVAASGS-KAVVGELQLLRDHI--TSDSTP-----LTFKWEKE-IPD-VIFVCF---H-------   96 (388)
T ss_dssp             CCBCE--EEETTTTEEEEEETT-EEEEEEHHHHHHHH--HSSSCC-----CCCSEEEE-CTT-EEEEEE---E-------
T ss_pred             cccEE--EEcCCCCEEEEeCCC-EEEEEEhhHhhhhh--cccccc-----ccceEEee-CCC-eeEEEE---C-------
Confidence            45445  999999999999988 46779875433000  000000     00000001 112 556666   2       


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                       +..++++ .+|.|++||+.+....... ..|..++.++.+.+.  .+++++.||.|.+||+.++....    +...|+|
T Consensus        97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~  167 (388)
T 1xip_A           97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS  167 (388)
T ss_dssp             -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred             -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence             6778888 8899999999876543332 457778998887764  38889999999999999887653    3458999


Q ss_pred             EEEccCCCEEEEECCeEEEEECCCCee--eEEe------e---cCCCCEEEEEEecCCCEEEEEe
Q 008041          165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~~~i~vwd~~~~~~--~~~~------~---~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ++|+|+|..+..+.|.+++|+...++.  ..++      .   +|...|.+|.|.+++.++++-+
T Consensus       168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999999943333339999999888775  5566      2   4788999999999999888744

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=3.1e-09  Score=103.85  Aligned_cols=183  Identities=14%  Similarity=0.023  Sum_probs=121.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~  161 (579)
                      +.++++...++.|..||..+++.....   ....+.++.|+|+|+++++. .+ .|.+||..+++........    ...
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~  135 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR  135 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEE---CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCC
Confidence            456677777889999999988754221   34679999999999876654 44 4999999888754332211    236


Q ss_pred             eeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--C
Q 008041          162 ISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--G  231 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~--~  231 (579)
                      +..++++|+|+++++..        +.|+.++  +++.. .+..+......++|+|+++.++.+...++.|.+|++.  +
T Consensus       136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc
Confidence            88999999999777653        3566666  45433 3333344578899999999876665567899999986  4


Q ss_pred             C-ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          232 V-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      + ..........+.........+.++     ++|.+.++...++.|..||.
T Consensus       213 Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred             CCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence            4 321111222222222344556666     78887766666788888876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=3.6e-09  Score=101.62  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=146.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++++|+++++...++.|..||.. ++.. .+....               . ......+...+.         +.+
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l  117 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDI  117 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCE
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCE
Confidence            445889999877776667889999987 6553 222110               0 011223333221         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|..||.. ++............+.++++.++|+.+++...++.|..||. +++.... ...+...+.++++
T Consensus       118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  195 (300)
T 2qc5_A          118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS  195 (300)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE
Confidence            5555557889999988 66543223334567899999999996666656788999998 5654432 2223457899999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +++|++.++..  +.|.+||. +++.... +..+...+.+++++++|+.+++.. .++.|..|+.. ++..    .+...
T Consensus       196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~-g~~~----~~~~~  268 (300)
T 2qc5_A          196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRITND-NTIQ----EYQLQ  268 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECTT-SCEE----EEECC
T ss_pred             CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEECCC-CcEE----EEECC
Confidence            99998877765  68999998 5544332 334456788999999998666543 57899999983 3211    12222


Q ss_pred             cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      ........+.++     ++|...++.. . .|..+|.
T Consensus       269 ~~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          269 TENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             STTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred             ccCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence            222334555565     7887555544 4 7777764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=3.3e-09  Score=102.13  Aligned_cols=219  Identities=11%  Similarity=0.084  Sum_probs=136.2

Q ss_pred             EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ..|+|++. ++++...++.|..||..++... .+. ...                  ...++.+.+.         +. +
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~------------------~~~~i~~~~d---------G~-l   67 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDA------------------PVSSVALRQS---------GG-Y   67 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSS------------------CEEEEEEBTT---------SS-E
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCC------------------ceEEEEECCC---------CC-E
Confidence            47899655 4555556889999999887653 222 111                  2233444332         45 4


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEe
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s~~~-----------d~~v~iwd~~~~~~~~~~  155 (579)
                      +++. ++.|.+||..+++......  .+ ....+.+++++|+|+++++...           .+.|+.+|. .++... +
T Consensus        68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-~  144 (297)
T 3g4e_A           68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-DHHVKK-Y  144 (297)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-TSCEEE-E
T ss_pred             EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-CCCEEE-E
Confidence            5555 5679999999887642221  11 1235889999999996665432           234555553 244333 3


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC---CeEEEEEC--CCCee-----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~--~~~~~-----~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      .......+.++|+|+++.++.+.   +.|.+|++  .++..     +..+..+......++++++|++.++.. .++.|.
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~  223 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVI  223 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEE
Confidence            33344568999999999776554   78999987  45532     223333445678999999998776655 578899


Q ss_pred             EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      .||..+++..     ..+..+...+.+++|.    -|+++.|++++.
T Consensus       224 ~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~  261 (297)
T 3g4e_A          224 RLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA  261 (297)
T ss_dssp             EECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred             EEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence            9999877633     3344444445566664    156676666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.28  E-value=1.6e-09  Score=106.29  Aligned_cols=276  Identities=14%  Similarity=0.016  Sum_probs=164.1

Q ss_pred             CcEEEEEEC-----CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008041           86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~-----~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~  150 (579)
                      +..+++...     ++.|.++|..+++.+.++..+.. + . +.++|||+++++++          .++.|.+||..+++
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            566777765     57899999999999887754433 4 4 99999999988875          36789999999999


Q ss_pred             eeeEeecCC-------CCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041          151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       151 ~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      .+.++....       .....++++|||++++++.    +.|.++|+.+++.+.++.-..  . ...+....+.+++.+ 
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~-  196 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC-  196 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence            988875432       2467899999999888764    689999999999998885321  1 223333445566665 


Q ss_pred             CCCeEEEEEcCC-Cccccceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce--eecccC----
Q 008041          220 GERYIALWRTDG-VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK----  291 (579)
Q Consensus       220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~----  291 (579)
                      .||.+.+.++.. ++... .....+. ..........|.    .++|++++ .+.+|+|+++|..+..  .+....    
T Consensus       197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             CCCCEEEEECCCCCeEEE-eecceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence            688888888876 33210 0000000 001111111221    16776555 6668999999986653  221111    


Q ss_pred             -----CeeEEeeeccCCcccccccchhhhhcccc---ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-
Q 008041          292 -----ATKILSSSEDVNSKSQKSATAAIFAAKLQ---DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-  362 (579)
Q Consensus       292 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-  362 (579)
                           .....-.....+.++++    .++.+..+   +.-+.....+++.+-. .+....++..-. ....+++++||+ 
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg~-~~~~lavs~D~~~  344 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMGH-EIDSINVSQDEKP  344 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEE-EECEEEECSSSSC
T ss_pred             ccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECCC-CcceEEECCCCCe
Confidence                 00000000000122222    23332211   1111112456666543 334444443322 678999999997 


Q ss_pred             eeeccccceecccceeee
Q 008041          363 LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       363 ~l~~s~s~d~~~~~w~~~  380 (579)
                      .|.++...++++.+.+..
T Consensus       345 ~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCCeEEEEECC
Confidence            553445557888888774

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.26  E-value=7e-10  Score=119.44  Aligned_cols=240  Identities=16%  Similarity=0.193  Sum_probs=157.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccC-cccc-ccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      ++..++.++.|+.|..+|..+|+.+..+... .... .....++             +..            +..+++++
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-------------~v~------------~g~v~vg~  174 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-------------RVV------------NGKVVIGN  174 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-------------EEE------------TTEEEECC
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-------------EEE------------CCEEEEEe
Confidence            4567888889999999999999999887642 1100 0000000             000            34455554


Q ss_pred             C------CCeEEEEEccCCeEEEEecCCC-C-----------------------------CCEEEEEEccCCCEEEEEeC
Q 008041           94 G------GGDVLALAVSAGQLKWRLSDCH-P-----------------------------GGVSAISFATHGSCIYSAGA  137 (579)
Q Consensus        94 ~------~g~i~iwd~~~~~~~~~~~~~h-~-----------------------------~~V~~l~~~~~~~~l~s~~~  137 (579)
                      .      +|.|+.||..+|+.++++.... .                             .....+++.|++..++.++.
T Consensus       175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~  254 (689)
T 1yiq_A          175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG  254 (689)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence            3      6889999999999988764211 0                             01125788898889999887


Q ss_pred             CCc-------------------EEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEE
Q 008041          138 DGM-------------------VCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTF  184 (579)
Q Consensus       138 d~~-------------------v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--~~i~vw  184 (579)
                      ++.                   |..||..+|+.+..++..  .       .++.......+|+   .++.++  |.++++
T Consensus       255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence            764                   999999999999887642  1       1222223334665   677776  899999


Q ss_pred             ECCCCeeeEEeecCC-C--------------------------------------CEEEEEEecCCCEEEEEecC-----
Q 008041          185 NCSDHKKMQKFSGHP-G--------------------------------------AVRFMTFSDNGKYVLSSAVG-----  220 (579)
Q Consensus       185 d~~~~~~~~~~~~h~-~--------------------------------------~v~~l~~s~~~~~l~s~~~~-----  220 (579)
                      |.++|+.+....-.. .                                      .-..++|+|+...+++...+     
T Consensus       335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  414 (689)
T 1yiq_A          335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY  414 (689)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred             ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence            999999874332110 0                                      01236888988877765311     


Q ss_pred             ---------------------------------------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCccc
Q 008041          221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD  261 (579)
Q Consensus       221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (579)
                                                             ++.|..||+.+++..     .....+....... +.     
T Consensus       415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----  483 (689)
T 1yiq_A          415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-----WEVPYVTIFNGGT-LS-----  483 (689)
T ss_dssp             ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----
T ss_pred             eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-----eEccCCCCccCcc-ce-----
Confidence                                                   377999999998744     3333333222222 22     


Q ss_pred             CCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          262 DAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..+..+++++.||.++.||.++|+.+...+
T Consensus       484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          484 TAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            467789999999999999999999986554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=1.8e-09  Score=107.89  Aligned_cols=237  Identities=13%  Similarity=0.123  Sum_probs=157.5

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------ccccccccccccccccccccccceEEe
Q 008041           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      ++|||||++++.+.          .++.|.++|..+++.+.++.-.       ......+.++++               
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD---------------  187 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD---------------  187 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence            48999999888775          3678999999999998877532       122334444444               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc
Q 008041           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~  150 (579)
                                  +.+++++..  ++.|.+.|+.+++.+.++.-+.   .  ....|++ +.+++.+.||.+.+.+..+++
T Consensus       188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence                        777888774  5789999999999987764321   1  2334443 556777788888888886665


Q ss_pred             eeeE----eecCCCC-eeEEEEccCCCEEEEEC--CeEEEEECCCCeee--EEeec----------CCCCEEEEEEecCC
Q 008041          151 LLGK----FRASTKG-ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSG----------HPGAVRFMTFSDNG  211 (579)
Q Consensus       151 ~~~~----~~~~~~~-v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~--~~~~~----------h~~~v~~l~~s~~~  211 (579)
                      ....    +.....+ ...+.+.+++..++...  +.+.+.|.......  ..+.-          .......++++|++
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg  330 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS  330 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence            5422    2222222 12456789888766655  89999998765321  11110          01122236899999


Q ss_pred             CEEEEEec---------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEE-cCCeEEEEE
Q 008041          212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY  280 (579)
Q Consensus       212 ~~l~s~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd  280 (579)
                      +.++++..         .++.|.++|+.+.+..     ..+.-.. ....+.++     |||+ ++++.. .++.|.++|
T Consensus       331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~-~P~gia~s-----pDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGH-EIDSINVS-----QDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCC-CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence            87777642         1357999999998744     2222222 23455666     9999 888888 499999999


Q ss_pred             cCCceeeccc
Q 008041          281 GQNIEELRNT  290 (579)
Q Consensus       281 ~~~~~~~~~~  290 (579)
                      ..+++.+..+
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999887654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=1.3e-08  Score=99.47  Aligned_cols=218  Identities=14%  Similarity=0.107  Sum_probs=135.1

Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+|+|++. ++++...++.|.+||..+++... +..                   ...+.++.|.+.         +. 
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~d---------g~-  102 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISD---------SK-  102 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEET---------TE-
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCC---------Ce-
Confidence            348999865 44555567899999998876532 211                   112345556542         44 


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecC--CC-CCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~--~h-~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +++++.+ .|.+||..+++.......  +. ...+.++.++|+|+++++...      .+.|+.+|  +++.. .+....
T Consensus       103 l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          103 QLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            4445544 499999988876422211  11 235899999999987665432      24566666  45443 333333


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECC--CC-e-----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-K-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~-~-----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      .....++|+|+|+.++.+.   +.|.+||+.  ++ +     .+..+.........+.+.++|.+.++.. .++.|.+|+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d  257 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD  257 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence            4678999999998776554   789999986  55 3     2223333445678899999998776654 568899999


Q ss_pred             cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      .. ++.     +..+..+...+.+++|.    .+++..|++++.
T Consensus       258 ~~-g~~-----~~~i~~~~~~~~~~af~----g~d~~~L~vt~~  291 (326)
T 2ghs_A          258 TD-GNH-----IARYEVPGKQTTCPAFI----GPDASRLLVTSA  291 (326)
T ss_dssp             TT-CCE-----EEEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred             CC-CCE-----EEEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence            84 332     12333344445566663    156666655554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=1.4e-09  Score=116.90  Aligned_cols=241  Identities=17%  Similarity=0.225  Sum_probs=161.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccC-ccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      ++..++.++.|+.|..+|..+|+.+..+... .........+.+            +.            .+..+++++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p------------~v------------~~~~v~v~~~  182 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP------------RV------------FKGKVIIGNG  182 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC------------EE------------ETTEEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc------------EE------------ECCEEEEEec
Confidence            4567888888999999999999999887643 110000000000            00            0445666654


Q ss_pred             ------CCeEEEEEccCCeEEEEecCCCCC-------------------------------CEEEEEEccCCCEEEEEeC
Q 008041           95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA  137 (579)
Q Consensus        95 ------~g~i~iwd~~~~~~~~~~~~~h~~-------------------------------~V~~l~~~~~~~~l~s~~~  137 (579)
                            +|.|+.||..+|+.++++......                               ....++++|++..++.++.
T Consensus       183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~  262 (677)
T 1kb0_A          183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG  262 (677)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence                  688999999999998877432111                               1135788899999888876


Q ss_pred             CC-------------------cEEEEeCCCCceeeEeecCC---------CCeeEEEEccCC---CEEEEEC--CeEEEE
Q 008041          138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF  184 (579)
Q Consensus       138 d~-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g---~~l~~~~--~~i~vw  184 (579)
                      ++                   .|..+|..+|+.+..++...         .....+....+|   +.++.++  |.++++
T Consensus       263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l  342 (677)
T 1kb0_A          263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL  342 (677)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence            64                   59999999999988876421         123333444577   5677776  899999


Q ss_pred             ECCCCeeeEEeecCCCC-----------E------------------------EEEEEecCCCEEEEEecC---------
Q 008041          185 NCSDHKKMQKFSGHPGA-----------V------------------------RFMTFSDNGKYVLSSAVG---------  220 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~~-----------v------------------------~~l~~s~~~~~l~s~~~~---------  220 (579)
                      |.++|+.+..+.-...+           +                        ..++|+|++..+++....         
T Consensus       343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred             ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence            99999988766422100           1                        156889988887775420         


Q ss_pred             ---------------------------------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEE
Q 008041          221 ---------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       221 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                                                       .+.|..||+.+++..     ....+........ +.     .++..+
T Consensus       423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----~~g~~v  491 (677)
T 1kb0_A          423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----WSVEHVSPWNGGT-LT-----TAGNVV  491 (677)
T ss_dssp             TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEE
T ss_pred             ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----eecCCCCCCcCcc-eE-----eCCCEE
Confidence                                             267999999988743     3333332222222 22     467788


Q ss_pred             EEEEcCCeEEEEEcCCceeecccC
Q 008041          268 LAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       268 ~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ++++.||.+++||..+++.+..+.
T Consensus       492 ~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          492 FQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCcEEEEECCCCceeeeee
Confidence            889999999999999999886654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.18  E-value=2.8e-08  Score=100.14  Aligned_cols=186  Identities=12%  Similarity=0.076  Sum_probs=123.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEe----ecCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~----~~~~  159 (579)
                      +.++++...++.|++||+.++...... ... .... ++|+|+++.++++..++  .|..|+...+.....+    ....
T Consensus       142 g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~  218 (409)
T 3hrp_A          142 NTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS  218 (409)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred             CCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence            555555566688999999988775433 222 2233 99999999999888766  7999998766544343    2144


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE----eecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~----~~~h~~~v--~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ..+.+++++|++..|+++.  +.|+.||..++.....    ..++...-  ..++|+|++..|+.+...++.|+.|+...
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            5778999999444444455  7899999987754322    22222222  39999996555555555788999998765


Q ss_pred             CccccceeeeeeecC--------------ceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCce
Q 008041          232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  285 (579)
                      ...    . . ....              -.....++++     ++|.++++-+ .+++|+.|+..+++
T Consensus       299 ~~~----~-~-~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          299 ECE----W-F-CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             CEE----E-E-EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             CEE----E-E-EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCE
Confidence            311    1 1 1111              1224556676     8999777777 78899999977665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.17  E-value=8.7e-09  Score=101.74  Aligned_cols=232  Identities=11%  Similarity=-0.024  Sum_probs=144.8

Q ss_pred             EEc--cCCCEEEEEe-CCCcEEEEECCCC----eEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041           12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        12 ~fs--pdg~~lasg~-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++  +++++|...+ .+++|.|+|+.+.    +...++...  .+.    ..   .+. +.+. .+...+         
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~----~~---~g~-s~Ph-~~~~~p---------  147 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVK----KV---SGY-SRLH-TVHCGP---------  147 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHH----HH---HCE-EEEE-EEEECS---------
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcc----cc---cCC-Cccc-ceeECC---------
Confidence            457  8888877654 6889999999765    555555200  000    00   000 0000 000011         


Q ss_pred             CCcEEEEEECC------CeEEEEEccCCeEEEEecCC-CC-CCEEEEEEccCCCEEEEEe-------------------C
Q 008041           85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A  137 (579)
Q Consensus        85 ~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~s~~-------------------~  137 (579)
                      ++ +++++..+      |.|.++|..+++.+.+...+ .. .--..+.|+|+++.+++..                   .
T Consensus       148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence            13 45554444      67999999999998777533 22 2234688899999888874                   3


Q ss_pred             CCcEEEEeCCCCceeeEeecCC--CCeeEEEE--ccCCCEEEEEC--------CeEEEEECCCCee--eEE--eecC---
Q 008041          138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQK--FSGH---  198 (579)
Q Consensus       138 d~~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--~p~g~~l~~~~--------~~i~vwd~~~~~~--~~~--~~~h---  198 (579)
                      +.+|.+||+.+++.+.++....  .....+.|  +|+|+++.++.        ++|.+|..+.++.  ...  +...   
T Consensus       227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            6899999999998888877531  24556666  99999776643        5787766554432  111  1110   


Q ss_pred             -------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc----------e----eEE
Q 008041          199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA----------V----FMD  251 (579)
Q Consensus       199 -------------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----------~----~~~  251 (579)
                                   ......|.+++||++|+++....+.|.+||+......  +.+..+....          .    .-.
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~--~lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP--VLTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--EEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEEEEeCCeeccccccccccCCCCCC
Confidence                         2346789999999999998877899999998643221  1222222110          0    135


Q ss_pred             eEEecCCcccCCCcEEEEEE
Q 008041          252 CRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~~~  271 (579)
                      .+.++     |||++|+++.
T Consensus       385 ~~~lS-----pDGk~LyVaN  399 (462)
T 2ece_A          385 MLEIS-----RDGRRVYVTN  399 (462)
T ss_dssp             CEEEC-----TTSSEEEEEC
T ss_pred             EEEEc-----CCCCEEEEEc
Confidence            56666     9999999998

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.15  E-value=2.2e-11  Score=121.22  Aligned_cols=222  Identities=9%  Similarity=0.012  Sum_probs=117.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..+++++.||.|..||..+|+....+..  ..+....+..                           ++..+++++.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~---------------------------~g~~~v~~s~d   58 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV---------------------------EEPAFLPDPND   58 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc---------------------------CCCEEEEeCCC
Confidence            578899999999999999999999988764  2111110100                           14456777899


Q ss_pred             CeEEEEEccCCeEEEEecCCCCC-CEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPG-GVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~-~V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      |.|+.||..+|+.++.... +.. .+. +..+. ++..+++++.|+.|+.||..+|+.+..+..+.    ...++|++..
T Consensus        59 g~l~a~d~~tG~~~w~~~~-~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~  132 (369)
T 2hz6_A           59 GSLYTLGSKNNEGLTKLPF-TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL  132 (369)
T ss_dssp             CCEEEC-----CCSEECSC-CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             CEEEEEECCCCceeeeeec-cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence            9999999999987665521 211 110 00111 34567888889999999999999888776543    2345677777


Q ss_pred             EEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCce
Q 008041          174 LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV  248 (579)
Q Consensus       174 l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  248 (579)
                      +++++  +.|+.||.++|+.+..+..+.  .....+.++.   ..+++++ .|+.|..||..+++..     ........
T Consensus       133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~-----W~~~~~~p  204 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL-----WIQNYASP  204 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE-----EEEECSSC
T ss_pred             EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE-----EEecCCCc
Confidence            77776  899999999998876654221  1223333331   3455555 6999999999988743     33333333


Q ss_pred             eEEeEEecCCcccCCCcEEEE--EEcCCeEEEEEcCCce
Q 008041          249 FMDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE  285 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~  285 (579)
                      ......++     ++|...+.  ...++.++.+|..+|+
T Consensus       205 v~~~~~~~-----~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          205 VVAFYVWQ-----REGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             EEEEEECT-----TSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             eEEEEEec-----CCceEeccceeecccceeeeehhcCC
Confidence            33333343     45432110  0113455666665555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.14  E-value=8.2e-09  Score=103.19  Aligned_cols=274  Identities=12%  Similarity=-0.004  Sum_probs=165.3

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008041           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~  150 (579)
                      +..+++....     +.|.++|+.+++.+.++..+. .+  .+.++|||++++.+.          .++.|.++|..+++
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            4556666553     689999999999988875443 34  899999999988876          36789999999999


Q ss_pred             eeeEeecC-------CCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEe
Q 008041          151 LLGKFRAS-------TKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA  218 (579)
Q Consensus       151 ~~~~~~~~-------~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~  218 (579)
                      .+.++.-.       ......+.++|||++++++.    +.|.++|+.+++.+.++.-..  .  ....|++ +.+++.+
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNC  236 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEc
Confidence            98887532       23456789999999988864    689999999999988886321  1  2334443 4444444


Q ss_pred             cCCCeEEEEEcCCCccccce-eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCee---
Q 008041          219 VGERYIALWRTDGVKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK---  294 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  294 (579)
                       .||.+.+.+...++..... ..+..... .......+.     +++..++..+..|.+.+.|........ ..+..   
T Consensus       237 -~dG~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~-----~dg~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~~~~  308 (426)
T 3c75_H          237 -RDGSLARVDFADGETKVTNTEVFHTEDE-LLINHPAFS-----LRSGRLVWPTYTGKIFQADLTAEGATF-RAPIEALT  308 (426)
T ss_dssp             -TTSSEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEEC-----TTTCEEEEEBTTSEEEEEEECSSCEEE-CCCEESSC
T ss_pred             -CCCCEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeec-----CCCCEEEEEeCCCcEEEEeccCCceEE-eeeeeecc
Confidence             6888887787444321000 00111111 111112334     788888778888999999986543211 00000   


Q ss_pred             -------EEeee--ccCCcccccccchhhhhccccc---eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc
Q 008041          295 -------ILSSS--EDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV  362 (579)
Q Consensus       295 -------~~~~~--~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~  362 (579)
                             .....  ...++++++    .++.+...+   .-+...+.+.+.+- .......++.... ....++|+|||+
T Consensus       309 ~~~i~~g~~p~g~~~va~s~dg~----rlyVa~~~~~~gthk~~s~~VsVID~-~T~kvv~~I~vg~-~P~gia~spDg~  382 (426)
T 3c75_H          309 EAERADDWRPGGWQQTAYHRQSD----RIYLLVDQRDEWKHKAASRFVVVLNA-ETGERINKIELGH-EIDSINVSQDAE  382 (426)
T ss_dssp             TTTGGGTEEECSSSCEEEEGGGT----EEEEEEEECCTTCTTSCEEEEEEEET-TTCCEEEEEEEEE-EECEEEECCSSS
T ss_pred             ccccccccccCCceeeEEcCCCC----EEEEEecccccccccCCCCEEEEEEC-CCCeEEEEEECCC-CcCeEEEccCCC
Confidence                   00000  001233333    233322110   00011345666553 2334444444332 478899999999


Q ss_pred             -eeeccccceecccceeee
Q 008041          363 -LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       363 -~l~~s~s~d~~~~~w~~~  380 (579)
                       ++.++...++++.+.|..
T Consensus       383 ~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          383 PLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             CEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEcCCCCeEEEEECC
Confidence             773444358888888874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.13  E-value=1.3e-09  Score=107.29  Aligned_cols=239  Identities=9%  Similarity=0.072  Sum_probs=140.3

Q ss_pred             EEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++++|+|+++++...  ++.++||.+.+++.. .+.....         . ..+++. ....+.+.+.         +.
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~---------~-~~~~~~-~p~gv~~d~~---------g~   79 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSG---------N-AIITFD-TVLGIKSDGN---------GI   79 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCS---------S-CCCCCS-CEEEEEECSS---------SE
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCccc---------C-ccccee-EeeEEEEcCC---------Cc
Confidence            3489999999888642  343556655456532 2321100         0 011111 2223334331         44


Q ss_pred             EEEEEEC-----CCeEEEEEccCCeEEEEecC-----CCCCCEEEEEEccCCCEEE-EEe---CCCcEEEEeCCCCceee
Q 008041           88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIY-SAG---ADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        88 ~l~~~~~-----~g~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~-s~~---~d~~v~iwd~~~~~~~~  153 (579)
                      +.++-+.     ++.|.+||+.+++.+..+.-     .+...+.++++++++..++ +..   .++.|.+||+.+++..+
T Consensus        80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            4444333     47899999999986654421     1234568999998655554 444   57899999998887666


Q ss_pred             EeecCC-----------------------------CCeeEEEEccCCCEEEEEC---CeEEEEECC---CC-----eeeE
Q 008041          154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DH-----KKMQ  193 (579)
Q Consensus       154 ~~~~~~-----------------------------~~v~~l~~~p~g~~l~~~~---~~i~vwd~~---~~-----~~~~  193 (579)
                      .+.+|.                             ..+..|+|+|+|+.|+.+.   +.++.++..   .+     +...
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            553321                             2358899999999888776   466666532   11     0000


Q ss_pred             --EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       194 --~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                        ...++......++++++|..+++.. .++.|.+||..+++..   .+.... .......+++.     +++.++++.+
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~  309 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN  309 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred             ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence              1223445567799999998777765 6889999998444321   122211 13345566776     7777777766


Q ss_pred             cCCeEEEE
Q 008041          272 ETGVCYIW  279 (579)
Q Consensus       272 ~dg~i~iw  279 (579)
                      ..+.+.+|
T Consensus       310 ~~~~~~~f  317 (343)
T 2qe8_A          310 QLHHSAPL  317 (343)
T ss_dssp             CGGGSGGG
T ss_pred             cccccccc
Confidence            55544444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=2.7e-08  Score=107.06  Aligned_cols=199  Identities=12%  Similarity=0.121  Sum_probs=127.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+..+...............    ....  ....            .+..+++++.+|
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~g~v~v~~~dg  131 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCD----AVNR--GVAV------------WKGKVYVGVLDG  131 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------ETTEEEEECTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccccccc----CCCC--ccEE------------ECCEEEEEccCC
Confidence            456777788899999999999999988643221100000000    0000  0000            156789999999


Q ss_pred             eEEEEEccCCeEEEEecCC-CCCCEEEEEEcc---CCCEEEEEe------CCCcEEEEeCCCCceeeEeecCC-------
Q 008041           97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST-------  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~---~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~-------  159 (579)
                      .|+.+|..+|+.+++.... +......+..+|   ++ .++.++      .++.|+.||..+|+.+..+....       
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            9999999999998877543 211111111112   44 444443      37899999999999988765211       


Q ss_pred             ------------------------CCeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEE
Q 008041          160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK  194 (579)
Q Consensus       160 ------------------------~~v~~l~~~p~g~~l~~~~--~-------------------~i~vwd~~~~~~~~~  194 (579)
                                              .....++++|++.+++.+.  +                   .|..||.++|+.+..
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~  290 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH  290 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence                                    0112578899888888876  3                   399999999999887


Q ss_pred             eec--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       195 ~~~--h~-------~~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ++.  |.       .++.......+|+   .++.++ .+|.++++|..+++..
T Consensus       291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL  342 (689)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence            764  21       2222223334665   566655 7999999999998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.10  E-value=1.6e-08  Score=93.87  Aligned_cols=191  Identities=12%  Similarity=0.061  Sum_probs=133.5

Q ss_pred             EEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++|+|||.++++.+.  ++.|+++|..+++.+..+.-...     .|         .   .-+.+.          ++.+
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-----~f---------g---eGi~~~----------g~~l   78 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-----YF---------G---EGLTLL----------NEKL   78 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----CC---------E---EEEEEE----------TTEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----cc---------e---EEEEEe----------CCEE
Confidence            389998755555443  57999999999999887642110     00         0   001111          1333


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS  163 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~  163 (579)
                      .++.-.++.+.++|..+.+.+.++..+ ...  ...+++||+.++.+..+++|.++|..+.+.+..+....     ..++
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            444445688999999999988777433 111  23355688888877788999999999998888766422     1467


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      .+.|. +|..++...  +.|.+.|..+++.+.++.-.             ....+.|+|+|+++.+++++...+.+.+.+
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            88888 776666554  89999999999998887521             135689999999987777776778888888


Q ss_pred             cCCC
Q 008041          229 TDGV  232 (579)
Q Consensus       229 ~~~~  232 (579)
                      +...
T Consensus       235 l~~~  238 (266)
T 2iwa_A          235 LHLV  238 (266)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            7654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.10  E-value=2e-08  Score=102.72  Aligned_cols=240  Identities=9%  Similarity=0.018  Sum_probs=155.6

Q ss_pred             cCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041           15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        15 pdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      +||+++..+.. +++|.+.|+.+.++...+.-.. ..+..+.+                  ... +      ++.+++++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~------------------~~~-p------~~~~v~~~  153 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRP------------------QKW-P------RSNYVFCN  153 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEE------------------CCS-S------BCSEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceee------------------eec-C------CCcEEEEe
Confidence            48888887765 5679999999999888553221 11111111                  100 0      15555555


Q ss_pred             E------------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---------------
Q 008041           93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---------------  139 (579)
Q Consensus        93 ~------------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---------------  139 (579)
                      +                  .++.+.+.|..+.+..+++.-+-  ....++++|+|+++++++.+.               
T Consensus       154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d  231 (595)
T 1fwx_A          154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  231 (595)
T ss_dssp             ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence            3                  23469999999999888875432  346677999999988887543               


Q ss_pred             -----------------------cEEEEeCCC--Cce-eeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe
Q 008041          140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK  190 (579)
Q Consensus       140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~  190 (579)
                                             .|.+.|..+  ++. +..+.. .....++.++|||+++++++   ++|.++|+.+.+
T Consensus       232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~  310 (595)
T 1fwx_A          232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  310 (595)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence                                   477788776  544 445543 23568899999999999988   799999998653


Q ss_pred             ------------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc------cccceeeeeeecCceeEEe
Q 008041          191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK------KQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       191 ------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~  252 (579)
                                  .+.+.. -......++|+|+| +++++..-|+.|.+||+....      .. ...+..+.-+-..-..
T Consensus       311 ~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yqpGh~  387 (595)
T 1fwx_A          311 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQPGHL  387 (595)
T ss_dssp             HHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSCEEEE
T ss_pred             cccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccccccc
Confidence                        233333 22456889999999 777777789999999987621      10 1133333333222111


Q ss_pred             EEecCCcccCCCcEEEEEEc-C-CeE-----------EEEEcCCce
Q 008041          253 RCIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE  285 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~~~~~-d-g~i-----------~iwd~~~~~  285 (579)
                      ........+|||++|++.+. . .++           .++|+..++
T Consensus       388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            11122334599999999965 1 234           889985543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.10  E-value=1.5e-09  Score=107.03  Aligned_cols=163  Identities=12%  Similarity=0.120  Sum_probs=114.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCe---------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                      ..++++|+.+ .+.+|++....         ........+.. |+.++|  |+++++++ .++.|++||+.+........
T Consensus        49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~  123 (388)
T 1xip_A           49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT  123 (388)
T ss_dssp             TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE
T ss_pred             CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc
Confidence            6677777776 55569976433         11111123666 999999  89999998 88999999998877666677


Q ss_pred             cCCCCeeEEEEccCCCEEEEE-C-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          157 ASTKGISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~-~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .+...+.++.+.+..  ++++ . |.|.+||+.+++...    +...|++++|+|+|  ++.+. .||.+++|+......
T Consensus       124 ~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          124 SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KDRSFQSFAWRNGEM  194 (388)
T ss_dssp             ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TTSCEEEEEEETTEE
T ss_pred             eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cCCcEEEEcCCCccc
Confidence            777888888877653  4444 3 999999999887643    44689999999999  45565 799999998877652


Q ss_pred             ccceeeeee------e---cCceeEEeEEecCCcccCCCcEEEEE
Q 008041          235 QSASCVLAM------E---HPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       235 ~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~~~  270 (579)
                      ..   ...+      .   .+...+..+.|.     +++.++++=
T Consensus       195 ~~---k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y  231 (388)
T 1xip_A          195 EK---QFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVF  231 (388)
T ss_dssp             EE---EEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEE
T ss_pred             cc---cceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEE
Confidence            10   1112      1   134555666666     777877753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.09  E-value=2.7e-11  Score=120.61  Aligned_cols=184  Identities=14%  Similarity=0.124  Sum_probs=103.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-Cee-
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS-  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~-  163 (579)
                      +..+++++.+|.|+.||..+|+.++++..   +++.+..+..++..+++++.|+.|+.||..+|+.+..+..+.. .+. 
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            77899999999999999999999988743   4555555666787788888999999999999988766653321 110 


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +..+. ++..+++++  +.++.||.++|+.+.++..+.    ...++|++..+++++ .|+.|+.||..+++..-   .+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W---~~  156 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELRW---NA  156 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCCC---EE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEEE---eE
Confidence            11111 233455544  899999999999888776553    234567778888877 68999999999887541   11


Q ss_pred             eeecCceeEEeEEecCCcccCCC---cEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ...  .  .....+.     ++.   ..+++++.||.++.||..+++.+...
T Consensus       157 ~~~--~--~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          157 TYF--D--YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             EEE--E--ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             ecc--c--ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            111  1  1111111     221   45777899999999999999876543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=8.7e-09  Score=99.58  Aligned_cols=217  Identities=15%  Similarity=0.118  Sum_probs=131.9

Q ss_pred             EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+|+|+|+ +++++..++.|..|+. ++.. ..+..+...+                  ..+.|.+.         +.++
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~------------------~gl~~d~d---------G~l~  100 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFT------------------NGNAVDAQ---------QRLV  100 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCE------------------EEEEECTT---------SCEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCcc------------------ceeeECCC---------CCEE
Confidence            47999999 4556666889999998 4543 2333222222                  22333321         5544


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCC
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPLTG  149 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s----~~~-------------d~~v~iwd~~~~  149 (579)
                      +....++.|.+|+.. ++......  .+ ....+.++++.|+|+.+++    |..             .+.|+.||..++
T Consensus       101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g  179 (305)
T 3dr2_A          101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS  179 (305)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred             EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence            443445789999986 55421111  11 1234678999999997775    321             256888887777


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCee--eEEe-ecCCCCEEEEEEecCCCEEEEEe
Q 008041          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~--~~~~-~~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      +.....  .......++|+|||+.|+.+.        +.|++|++..+..  ...+ ....+....+.++++|++.++ +
T Consensus       180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~  256 (305)
T 3dr2_A          180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-S  256 (305)
T ss_dssp             CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-C
T ss_pred             cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-c
Confidence            654433  344678899999999776654        3799999876541  1112 112344567899999985443 3


Q ss_pred             cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  274 (579)
                       .+ .|.+|+.....      ...+..+. ....++|.     ++++.|..++.++
T Consensus       257 -~~-gv~~~~~~g~~------~~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~  298 (305)
T 3dr2_A          257 -GT-GVCVFDSDGQL------LGHIPTPG-TASNCTFD-----QAQQRLFITGGPC  298 (305)
T ss_dssp             -SS-EEEEECTTSCE------EEEEECSS-CCCEEEEC-----TTSCEEEEEETTE
T ss_pred             -CC-cEEEECCCCCE------EEEEECCC-ceeEEEEe-----CCCCEEEEEcCCe
Confidence             34 49999985332      12233333 24556676     8888888887754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.08  E-value=5.4e-08  Score=97.01  Aligned_cols=234  Identities=9%  Similarity=0.022  Sum_probs=143.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..+..++.++.|..+|..+|+....+........    ...     ....   +...+..       .+..+++++.+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~-----~~~~---~~~~~~~-------~~~~v~v~~~~  112 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSK-----EPAL---LSGGVTV-------SGGHVYIGSEK  112 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSC-----CCCC---EEEEEEE-------ETTEEEEEETT
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccc-----cCcc---cccCceE-------eCCEEEEEcCC
Confidence            356777888899999999999998877653221000    000     0000   0000000       15678899999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD  170 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~  170 (579)
                      +.|..+|..+|+..++.... .........  .+..++.++.++.|..+|..+|+.+..+.......     ...... +
T Consensus       113 g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~  188 (376)
T 3q7m_A          113 AQVYALNTSDGTVAWQTKVA-GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F  188 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECS-SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred             CEEEEEECCCCCEEEEEeCC-CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence            99999999999988776422 111111122  24478888899999999999999888766432211     222222 4


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeecCCCC----------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~----------v-~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      + .++.+.  +.+..+|..+++.+.........          + .....  .+..++.++ .++.+..+|..+++..  
T Consensus       189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~--  262 (376)
T 3q7m_A          189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM--  262 (376)
T ss_dssp             T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred             C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence            4 445554  89999999999887766532110          1 11111  234566665 6899999999988643  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                         .......  .....       .++..+++++.+|.+..+|..+++.+...
T Consensus       263 ---w~~~~~~--~~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          263 ---WKRELGS--VNDFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             ---EEECCCC--EEEEE-------EETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             ---eeccCCC--CCCce-------EECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence               2222211  11122       24567888889999999999999876443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=8.6e-08  Score=102.97  Aligned_cols=199  Identities=11%  Similarity=0.099  Sum_probs=128.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+.++..............+    ...   .....           .+..+++++.++
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~---~~~a~-----------~~~~v~v~~~dg  138 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD----VVN---RGVAL-----------WKGKVYVGAWDG  138 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC----SCC---CCCEE-----------ETTEEEEECTTS
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccc----CCC---CCceE-----------ECCEEEEEcCCC
Confidence            445667777899999999999999888643221100000000    000   00000           156789999999


Q ss_pred             eEEEEEccCCeEEEEecCCCC----CCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC-----
Q 008041           97 DVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG-----  161 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~-----  161 (579)
                      .|+.+|..+|+.++++.....    ..+.+--.- .+..++.++.      ++.|+.||..+|+.+..+......     
T Consensus       139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence            999999999999888743201    112111011 2345555543      799999999999998877642211     


Q ss_pred             ---------------------------eeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeE
Q 008041          162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ  193 (579)
Q Consensus       162 ---------------------------v~~l~~~p~g~~l~~~~--~-------------------~i~vwd~~~~~~~~  193 (579)
                                                 ...++++|++..++.+.  +                   .|..+|.++|+.+.
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W  297 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW  297 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence                                       13578899888888776  2                   49999999999988


Q ss_pred             Eeec--CC-------CCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccc
Q 008041          194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       194 ~~~~--h~-------~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .++.  |.       .....+....+|   +.++.++ .+|.++++|..+++..
T Consensus       298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence            7753  21       122233444577   5666665 7999999999998754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.04  E-value=6e-08  Score=96.67  Aligned_cols=224  Identities=16%  Similarity=0.135  Sum_probs=143.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..+..++.++.|..+|..+|+....+......     .+.+            . .           .+..+++++.+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~p------------~-~-----------~~~~v~v~~~~  152 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-----LSRP------------V-V-----------SDGLVLIHTSN  152 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-----CSCC------------E-E-----------ETTEEEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-----EcCC------------E-E-----------ECCEEEEEcCC
Confidence            4567778888999999999999988776532210     0000            0 0           04568889999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCE------EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------  161 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V------~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~--------  161 (579)
                      |.|..+|..+|+.+++....  .++      .....  .+..++.++.++.+..+|..+|+.+..+......        
T Consensus       153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  228 (376)
T 3q7m_A          153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL  228 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECC--C-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred             CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence            99999999999988776421  111      11122  2456788888999999999999988776532110        


Q ss_pred             --eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          162 --ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 --v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                        +.......++.+++.+. +.+..+|.++++.+....  ......+...  +..++.++ .++.+..+|..+++..   
T Consensus       229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~--~~~l~~~~-~~g~l~~~d~~tG~~~---  300 (376)
T 3q7m_A          229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVD--GNRIYLVD-QNDRVMALTIDGGVTL---  300 (376)
T ss_dssp             -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEE--TTEEEEEE-TTCCEEEEETTTCCEE---
T ss_pred             cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEE--CCEEEEEc-CCCeEEEEECCCCcEE---
Confidence              11111111444444443 899999999998876654  2334444443  45666666 6889999999988643   


Q ss_pred             eeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041          239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  289 (579)
                        .... ...........       .+..|++++.+|.++.||..+++.+..
T Consensus       301 --w~~~~~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~  343 (376)
T 3q7m_A          301 --WTQSDLLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQ  343 (376)
T ss_dssp             --EEECTTTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             --EeecccCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEE
Confidence              2222 11111111111       346788899999999999999987654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.03  E-value=7.1e-08  Score=93.13  Aligned_cols=180  Identities=13%  Similarity=0.060  Sum_probs=113.4

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v  162 (579)
                      .+++++..++.|..|+. +++.. .+ ..+...+.+++++++|+.+++...++.|..||.. ++........    ...+
T Consensus        58 ~l~~~d~~~~~i~~~~~-~g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~  133 (305)
T 3dr2_A           58 TLVWSDLVGRRVLGWRE-DGTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP  133 (305)
T ss_dssp             EEEEEETTTTEEEEEET-TSCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred             EEEEEECCCCEEEEEeC-CCCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence            36777778889999998 45432 22 2355679999999999866655566889999975 6533222111    1356


Q ss_pred             eEEEEccCCCEEEE----EC---------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC---
Q 008041          163 SCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG---  220 (579)
Q Consensus       163 ~~l~~~p~g~~l~~----~~---------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~---  220 (579)
                      ..++++|+|+++++    |.               +.|+.||..+++.....  .......++|+||++.|+.+...   
T Consensus       134 ~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC--
T ss_pred             CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcC
Confidence            78999999998886    21               46788887666644332  34556889999999987776533   


Q ss_pred             --CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          221 --ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       221 --d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                        ++.|.+|++...... ....+. .........+.++     ++|++ .+++.+ .|.+|+.
T Consensus       212 ~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~l-wv~~~~-gv~~~~~  265 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWL-WSSSGT-GVCVFDS  265 (305)
T ss_dssp             -CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCE-EECCSS-EEEEECT
T ss_pred             CCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCE-EEecCC-cEEEECC
Confidence              268999998765311 011111 1111222344554     77774 333433 4777765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=4.3e-08  Score=105.19  Aligned_cols=240  Identities=19%  Similarity=0.235  Sum_probs=154.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC--
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--   94 (579)
                      +..++.++.|+.|..+|..+|+.+..+............+.+            +.            .+..++++..  
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v------------~~~~v~vg~~~~  172 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP------------RV------------VKGKVIIGNGGA  172 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC------------EE------------ETTEEEECCBCT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC------------EE------------ECCEEEEeCCCC
Confidence            457778888999999999999999887642211000000000            00            0344566654  


Q ss_pred             ----CCeEEEEEccCCeEEEEecCC--CC----------------------------CCEEEEEEccCCCEEEEEeCCC-
Q 008041           95 ----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG-  139 (579)
Q Consensus        95 ----~g~i~iwd~~~~~~~~~~~~~--h~----------------------------~~V~~l~~~~~~~~l~s~~~d~-  139 (579)
                          +|.|+.+|..+|+.++++...  ..                            .....+++.|++..++.++.++ 
T Consensus       173 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~  252 (668)
T 1kv9_A          173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS  252 (668)
T ss_dssp             TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             CcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence                488999999999998877421  10                            0112467888888888887766 


Q ss_pred             ------------------cEEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEEECC
Q 008041          140 ------------------MVCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTFNCS  187 (579)
Q Consensus       140 ------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--~~i~vwd~~  187 (579)
                                        .|..+|..+|+.+..++..  .       .++....+..+|+   .++.++  |.++++|..
T Consensus       253 ~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~  332 (668)
T 1kv9_A          253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT  332 (668)
T ss_dssp             SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred             ccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC
Confidence                              3999999999998887642  1       2233333444675   566666  899999999


Q ss_pred             CCeeeEEeecCCC------------C------------------------EEEEEEecCCCEEEEEe-------------
Q 008041          188 DHKKMQKFSGHPG------------A------------------------VRFMTFSDNGKYVLSSA-------------  218 (579)
Q Consensus       188 ~~~~~~~~~~h~~------------~------------------------v~~l~~s~~~~~l~s~~-------------  218 (579)
                      +|+.+........            +                        -..++++|+...++...             
T Consensus       333 tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~  412 (668)
T 1kv9_A          333 NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD  412 (668)
T ss_dssp             TCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred             CCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence            9998744322110            0                        01267788766655421             


Q ss_pred             ----------------------cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeE
Q 008041          219 ----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (579)
Q Consensus       219 ----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  276 (579)
                                            ..++.|..||+.+++..     ...............      ..+..+++++.||.+
T Consensus       413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~vf~g~~dg~l  481 (668)
T 1kv9_A          413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGGTLS------TAGNLVFQGTAAGQM  481 (668)
T ss_dssp             CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCCEEE------ETTTEEEEECTTSEE
T ss_pred             cccccccccCccccccCCCCCCCccceEEEEeCCCCcEE-----EEccCCCCCcCceeE------eCCCEEEEECCcccc
Confidence                                  12478999999988743     232222222211211      456788889999999


Q ss_pred             EEEEcCCceeecccC
Q 008041          277 YIWYGQNIEELRNTK  291 (579)
Q Consensus       277 ~iwd~~~~~~~~~~~  291 (579)
                      +.||.++++.+...+
T Consensus       482 ~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          482 HAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             hhhhhhcChhheEec
Confidence            999999999886553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.99  E-value=6.8e-09  Score=102.05  Aligned_cols=231  Identities=10%  Similarity=-0.003  Sum_probs=143.4

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCc-------cccccccccccccccccccccceEEe
Q 008041           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      ++|||||++++.+.          .++.|.+||..+++.+.++....       .....+.++++               
T Consensus        70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD---------------  134 (368)
T 1mda_H           70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS---------------  134 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT---------------
T ss_pred             eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence            48999999888876          36889999999999999886331       12333444444               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEE--EEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC
Q 008041           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLA--LAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~i--wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~  148 (579)
                                  +.+++++..  +..|.+  +|+.+   +.++.-+..     ..+.|+|+ .+++.+.|+.+...|+.+
T Consensus       135 ------------Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          135 ------------SACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             ------------SSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             ------------CCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence                        667788775  356888  99887   333321111     12335443 355666788888889876


Q ss_pred             -----Cceee----EeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe--eeEEeec-------C---CCCEEEEE
Q 008041          149 -----GSLLG----KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK--KMQKFSG-------H---PGAVRFMT  206 (579)
Q Consensus       149 -----~~~~~----~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~--~~~~~~~-------h---~~~v~~l~  206 (579)
                           ++...    .+.....+.   . .+++..++..+ +.+.+.|..+..  .+..+.-       +   ......+.
T Consensus       195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence                 43321    122222333   3 55555554444 899999986542  2222211       0   11122268


Q ss_pred             EecCCCEEEEEec---C-----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcE-EEEEE-cCCeE
Q 008041          207 FSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAIS-ETGVC  276 (579)
Q Consensus       207 ~s~~~~~l~s~~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~dg~i  276 (579)
                      |+|+++.++.+..   .     ++.+.++|+.+.+..     ..+.-.. ....+.++     |||++ +++.. .++.|
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-----~~i~vg~-~p~gi~~s-----~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-----GPISNGH-DSDAIIAA-----QDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-----ECCEEEE-EECEEEEC-----CSSSCEEEEEETTTTEE
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE-----EEEECCC-CcceEEEC-----CCCCEEEEEccCCCCeE
Confidence            9999998887642   1     235669999998744     2222221 24556676     89985 55555 49999


Q ss_pred             EEEEcCCceeecccC
Q 008041          277 YIWYGQNIEELRNTK  291 (579)
Q Consensus       277 ~iwd~~~~~~~~~~~  291 (579)
                      .++|..+++.+..++
T Consensus       340 sVID~~t~kvv~~I~  354 (368)
T 1mda_H          340 DIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEESSSCEEEEECC
T ss_pred             EEEECCCCcEEEEEE
Confidence            999999999887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.98  E-value=2.5e-07  Score=94.72  Aligned_cols=189  Identities=9%  Similarity=0.051  Sum_probs=132.8

Q ss_pred             CcEEEEEECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEE-c-cCCCEEEEEe------------------CCCcEEEE
Q 008041           86 SSLLVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------ADGMVCEI  144 (579)
Q Consensus        86 ~~~l~~~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~-~-~~~~~l~s~~------------------~d~~v~iw  144 (579)
                      +.++++...++ .|.+.|+.+.++...+.-.......++++ + |+++++++++                  .++.+.++
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            66777766654 59999999999876332233456889998 5 9999998884                  34579999


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------------------------------------eEEEE
Q 008041          145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------------------------------------QLKTF  184 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~---------------------------------------~i~vw  184 (579)
                      |..+.+...++.-.. ....++++|+|+++++++ +                                       .|.+.
T Consensus       181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            999998888877533 457788999999888776 2                                       26667


Q ss_pred             ECCC--Cee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccce-eeeeeecCceeEEeEE
Q 008041          185 NCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSAS-CVLAMEHPAVFMDCRC  254 (579)
Q Consensus       185 d~~~--~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~~~~~  254 (579)
                      |.++  ++. +..++.. ....++.++|||+++++++..+.+|.++|+.+.+.      .... ......- ..-.....
T Consensus       260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTA  337 (595)
T ss_dssp             ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEE
T ss_pred             eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEE
Confidence            7776  444 4455432 24577999999999999888889999999986531      0001 1122222 22334566


Q ss_pred             ecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041          255 IDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       255 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  283 (579)
                      |+     |+| ++.+.. .|++|.+||+++
T Consensus       338 F~-----~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          338 FD-----GRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EC-----TTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EC-----CCC-eEEEEEecCCcEEEEEhhH
Confidence            76     999 555554 499999999877

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=6.4e-08  Score=95.60  Aligned_cols=190  Identities=11%  Similarity=0.053  Sum_probs=130.9

Q ss_pred             CcEEEEEECCCeEEEEEccCC----eEEEEec------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~----~~~~~~~------~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~  149 (579)
                      ..+++.+..++.|+++|+.+.    +....+.      +........+...|+| .++++..+      +.|.++|..++
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            445666777788999999765    5554441      1011245667888999 77776655      78999999999


Q ss_pred             ceeeEeecCCC---CeeEEEEccCCCEEEEE---------------------CCeEEEEECCCCeeeEEeecC-C-CCEE
Q 008041          150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR  203 (579)
Q Consensus       150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~~~---------------------~~~i~vwd~~~~~~~~~~~~h-~-~~v~  203 (579)
                      +.+.++.....   --+.+.|+|+++.+++.                     +++|.+||+.+++.+.++.-. . ....
T Consensus       175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~  254 (462)
T 2ece_A          175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL  254 (462)
T ss_dssp             CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred             eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence            99998874322   23457889999999988                     379999999999888887642 1 2345


Q ss_pred             EEEE--ecCCCEEEEEec-----CCCeEEEEEcCCCccccceeeeeeecC----------------ceeEEeEEecCCcc
Q 008041          204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV  260 (579)
Q Consensus       204 ~l~~--s~~~~~l~s~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  260 (579)
                      .+.|  +|+++++++++.     .+++|.+|....++... ..+..+...                ......+.++    
T Consensus       255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS----  329 (462)
T 2ece_A          255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA-EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS----  329 (462)
T ss_dssp             EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE-EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred             eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE-EEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence            6666  999999988886     67789887776543211 011101100                1223445565    


Q ss_pred             cCCCcEEEEEEc-CCeEEEEEcC
Q 008041          261 DDAGLYVLAISE-TGVCYIWYGQ  282 (579)
Q Consensus       261 ~~~~~~l~~~~~-dg~i~iwd~~  282 (579)
                       +||++|.++.. .+.|.+||+.
T Consensus       330 -~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          330 -LDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             -TTSCEEEEEETTTTEEEEEECS
T ss_pred             -CCCCEEEEEeCCCCEEEEEEec
Confidence             99999998876 7899999985

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.90  E-value=4.1e-07  Score=95.53  Aligned_cols=245  Identities=13%  Similarity=0.104  Sum_probs=151.5

Q ss_pred             EEccCCCE----EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fspdg~~----lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +++|.+..    ++.++.|+.|.-+|..+|+.+...............+.+            +..            +.
T Consensus       112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP------------~v~------------~g  167 (599)
T 1w6s_A          112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YVV------------KD  167 (599)
T ss_dssp             EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TT
T ss_pred             EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC------------EEE------------CC
Confidence            55554444    778888999999999999998876532211000001111            000            34


Q ss_pred             EEEEEEC------CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEE
Q 008041           88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS  124 (579)
Q Consensus        88 ~l~~~~~------~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~  124 (579)
                      .+++++.      +|.|+.+|..+|+.++++......                                    .+ ...+
T Consensus       168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a  247 (599)
T 1w6s_A          168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA  247 (599)
T ss_dssp             EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred             EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence            4666653      789999999999998876432110                                    01 1345


Q ss_pred             EccCCCEEEEEeCC----------------CcEEEEeCCCCceeeEeecCCC---------CeeEEEEc-cCC---CEEE
Q 008041          125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDG---KMLA  175 (579)
Q Consensus       125 ~~~~~~~l~s~~~d----------------~~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~-p~g---~~l~  175 (579)
                      +.++...++.+..+                +.|..+|..+|+.+..++....         ...-+... .+|   +.++
T Consensus       248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~  327 (599)
T 1w6s_A          248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT  327 (599)
T ss_dssp             EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred             EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence            66777788877665                3799999999999888765321         11112222 567   4566


Q ss_pred             EEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEE
Q 008041          176 TAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYV  214 (579)
Q Consensus       176 ~~~--~~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~s~~~~~l  214 (579)
                      .++  |.++++|.++|+.+....-..             .++                          ..++++|+...+
T Consensus       328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~  407 (599)
T 1w6s_A          328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF  407 (599)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence            665  899999999999877654211             111                          245677776665


Q ss_pred             EEEec--------------------------------------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEec
Q 008041          215 LSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID  256 (579)
Q Consensus       215 ~s~~~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (579)
                      ++...                                      .++.|..||+.+++..     ............... 
T Consensus       408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~~~-  481 (599)
T 1w6s_A          408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGTMA-  481 (599)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE-
T ss_pred             EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-----eEecCCCCccCcceE-
Confidence            55320                                      2367888888877643     222221111111111 


Q ss_pred             CCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                           ..+..++.++.||.++.||.++|+.+...+
T Consensus       482 -----tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          482 -----TAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             -----ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -----ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence                 256777789999999999999999886553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.90  E-value=1.7e-07  Score=85.96  Aligned_cols=173  Identities=8%  Similarity=0.077  Sum_probs=119.8

Q ss_pred             EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspdg~~lasg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|+ ++.++.+.+.+|  .|+++|.++|+....+.....     .|..         .   +...           +..+
T Consensus        49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~Fge---------G---it~~-----------g~~l   99 (262)
T 3nol_A           49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YFGE---------G---ISDW-----------KDKI   99 (262)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CCEE---------E---EEEE-----------TTEE
T ss_pred             EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----ccee---------E---EEEe-----------CCEE
Confidence            677 676666777665  899999999999887752110     0100         0   0000           3334


Q ss_pred             EEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008041           90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS  163 (579)
Q Consensus        90 ~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~  163 (579)
                      +..+ .++.+.+||..+.+.+.++..+..+  ++++  ++++.++.+..++.|.++|..+.+.+.++....     ..++
T Consensus       100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          100 VGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             EEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            4444 5788999999999998777532211  3343  577777777667889999999999888866422     2345


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEe
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~s~~~~~l~s~~  218 (579)
                      .+.|. +|++.+..-  +.|.+.|.++++.+..+.-.            ....+.|+|+|+++.|+.+|
T Consensus       176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            67776 787666554  89999999999998887532            13468999999988887776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.89  E-value=4.8e-07  Score=95.00  Aligned_cols=240  Identities=15%  Similarity=0.135  Sum_probs=150.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC--
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--   94 (579)
                      +..++.++.|+.|..+|..+|+.+..+............+.+            +.            .+..+++++.  
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v------------~~g~v~vg~~~~  170 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FV------------AKDTVLMGCSGA  170 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EE------------ETTEEEEECBCG
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC------------EE------------ECCEEEEEecCC
Confidence            557777888999999999999998876532210000000000            00            0345666665  


Q ss_pred             ----CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEEEccCCCEEE
Q 008041           95 ----GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAISFATHGSCIY  133 (579)
Q Consensus        95 ----~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~~~~~~~~l~  133 (579)
                          +|.|+.+|..+|+.++++......                                    .+ ..+++.++...++
T Consensus       171 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy  250 (571)
T 2ad6_A          171 ELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY  250 (571)
T ss_dssp             GGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE
T ss_pred             ccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE
Confidence                789999999999998876422110                                    00 1356667666777


Q ss_pred             EEeCC----------------CcEEEEeCCCCceeeEeecCC---------CCeeEEEEccCCC---EEEEEC--CeEEE
Q 008041          134 SAGAD----------------GMVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKT  183 (579)
Q Consensus       134 s~~~d----------------~~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g~---~l~~~~--~~i~v  183 (579)
                      .++.+                +.|..+|..+|+.+..++...         ....-+...++|+   .++.++  |.+++
T Consensus       251 ~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~  330 (571)
T 2ad6_A          251 YGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYT  330 (571)
T ss_dssp             EECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEE
T ss_pred             EECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEE
Confidence            66532                359999999999988876421         1111223335774   556666  89999


Q ss_pred             EECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEEEEEec-----
Q 008041          184 FNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV-----  219 (579)
Q Consensus       184 wd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~s~~~~~l~s~~~-----  219 (579)
                      +|..+|+.+..+.-..             .++                          ..++|+|++..+++.+.     
T Consensus       331 lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~  410 (571)
T 2ad6_A          331 LNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMD  410 (571)
T ss_dssp             EETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred             EECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccc
Confidence            9999999877654221             111                          24578888777766541     


Q ss_pred             -------------------------------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041          220 -------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       220 -------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                                                     .++.|..||+.+++..     ...............      ..+..++
T Consensus       411 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~v~  479 (571)
T 2ad6_A          411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLVW  479 (571)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEEE
T ss_pred             ccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-----EEecCCCCccceeEE------ECCCEEE
Confidence                                           2478889998887643     222222211111111      2456777


Q ss_pred             EEEcCCeEEEEEcCCceeecccC
Q 008041          269 AISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       269 ~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      +++.||.++.||.++++.+..++
T Consensus       480 ~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          480 YATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCCEEEEEe
Confidence            79999999999999999876543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.88  E-value=9.4e-08  Score=103.48  Aligned_cols=186  Identities=12%  Similarity=0.047  Sum_probs=120.7

Q ss_pred             CcEEEEEE-CCC----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008041           86 SSLLVLGT-GGG----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~-~~g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-------------v~iwd~~  147 (579)
                      +++++.+. ..|    .|++||+.+++.+.....+.  ...+++|+ ||+.|+.++.+..             |++|++.
T Consensus       140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg  216 (693)
T 3iuj_A          140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG  216 (693)
T ss_dssp             SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred             CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence            56566543 233    59999999998754322211  12567899 9999988887743             9999998


Q ss_pred             CCce--eeEee--c-CCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEE
Q 008041          148 TGSL--LGKFR--A-STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       148 ~~~~--~~~~~--~-~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~  215 (579)
                      ++..  ...+.  . +...+.++.|+|||++++...      +.|+++|+.++. ....+..+....... ++++|..|+
T Consensus       217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~  295 (693)
T 3iuj_A          217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY  295 (693)
T ss_dssp             SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred             CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence            7643  22333  2 344578899999999886543      489999998763 455666666665555 667776666


Q ss_pred             EEecCC---CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CC--eEEEEEcCCce
Q 008041          216 SSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIE  285 (579)
Q Consensus       216 s~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~  285 (579)
                      ..+..+   +.|..|++.++.......  ...+....+   .++     +++++|+.... +|  .|++|++..+.
T Consensus       296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~---~~s-----~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          296 LLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQVL---TVH-----SGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCE---EEE-----EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCEE---EEE-----EECCEEEEEEEECCeeEEEEEECCCCe
Confidence            555333   579999998765321111  123333333   455     77887777665 44  78999987543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.86  E-value=1.6e-07  Score=91.55  Aligned_cols=249  Identities=16%  Similarity=0.199  Sum_probs=157.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc--ccccceEEeeeccccccccc-----
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL--SVDYTCMKWLSVDRKKKRKL-----   84 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~-----   84 (579)
                      .++.+|. +..++.++.|..|| .+++....+......+.......+   +.+  .... ...+.+ +.+.....     
T Consensus        26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~---g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~   98 (330)
T 3hxj_A           26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKD---GTIYFGSDK-VYAINP-DGTEKWRFDTKKA   98 (330)
T ss_dssp             EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTT---TEECCSSCE-EEEECC-CGGGGGGSCC---
T ss_pred             eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecC---CcEEEecCc-EEEECC-CCcEEEEEECCCC
Confidence            4555664 55566788899999 888877655433222222222211   111  0011 222222 21111111     


Q ss_pred             -------CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           85 -------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        85 -------~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                             .+..+.+++.++.|..+|.. ++..+... .+...+.++...+++. ++.++.++.|..+|.. ++....+..
T Consensus        99 ~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A           99 IVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             --CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             cccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence                   14568888889999999998 77766553 2344566667777776 6667788999999988 887777776


Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ....+.++.+.++|.+.+.. +.|..|| .+++.+..+......+.++...++|...+ ++ .++.+..++... +..  
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-~~~gl~~~~~~g-~~~--  247 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TS-LDGHLYAINPDG-TEK--  247 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EE-TTTEEEEECTTS-CEE--
T ss_pred             CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-Ec-CCCeEEEECCCC-CEe--
Confidence            66678888888899887777 9999999 78877777765666788888988886554 44 578888887433 211  


Q ss_pred             eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                         ................     +++ .|.+++.+|.+..||. +++.+.
T Consensus       248 ---~~~~~~~~~~~~~~~~-----~~g-~l~v~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          248 ---WRFKTGKRIESSPVIG-----NTD-TIYFGSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             ---EEEECSSCCCSCCEEC-----TTS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred             ---EEeeCCCCccccceEc-----CCC-eEEEecCCCCEEEECC-CCcEEE
Confidence               2222222222223332     344 5777888989999995 565543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.85  E-value=9.9e-08  Score=93.77  Aligned_cols=125  Identities=10%  Similarity=-0.040  Sum_probs=91.6

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCceeeEeecC-------C
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS-------T  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~-------~  159 (579)
                      .|.++|..+++.+.++..+.. +  .+.|+|||++++++.          .++.|.+||+.+++.+.++...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            789999999999988865553 5  799999999998886          3788999999999999998644       1


Q ss_pred             CCeeEEEEccCCCEEEEEC----CeEEE--EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~----~~i~v--wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .....++++|||++++++.    +.+.+  +|..+   +.++.-- +.   ..+.|+++..+.+.+.|+.+.+.++..
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence            2467899999999998874    47888  88877   4444311 11   123455543333333688888888876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.85  E-value=4.2e-07  Score=88.48  Aligned_cols=216  Identities=18%  Similarity=0.231  Sum_probs=139.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..+..++.++.|..+|.. |+....+......+......                            ....+.+++.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~----------------------------~~g~l~vgt~~~  157 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS----------------------------EDGTIYVGSNDN  157 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC----------------------------TTSCEEEECTTS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc----------------------------CCCEEEEEcCCC
Confidence            3455566667778888877 66655544222111111100                            033477888889


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      .|..||.. ++..+... .....+.++.+.+++.. +.++  +.|..+| .+++....+......+.++...++|.+.+.
T Consensus       158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~  231 (330)
T 3hxj_A          158 YLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT  231 (330)
T ss_dssp             EEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred             EEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence            99999999 77765553 23455677777777764 4454  8899999 788877777666667889999999888777


Q ss_pred             EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041          177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       177 ~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                      .. +.+..+| .+++.+..+......+..+.+.+++.. ..++ .++.|..+|. +++..     .........+.....
T Consensus       232 t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~  302 (330)
T 3hxj_A          232 SLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTI-YFGS-YDGHLYAINP-DGTEK-----WNFETGSWIIATPVI  302 (330)
T ss_dssp             ETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCE-EEEC-TTCEEEEECT-TSCEE-----EEEECSSCCCSCCEE
T ss_pred             cCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeE-EEec-CCCCEEEECC-CCcEE-----EEEEcCCccccceEE
Confidence            76 8888887 466666666655444555666667754 4454 5778999985 44322     222233333444444


Q ss_pred             cCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          256 DNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      .     ++|. |..++.+|.+++...+
T Consensus       303 d-----~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          303 D-----ENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             C-----TTCC-EEEECTTSCEEEEEC-
T ss_pred             c-----CCCE-EEEEcCCCeEEEEecc
Confidence            3     4555 6678899999988654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.85  E-value=2.6e-07  Score=90.78  Aligned_cols=188  Identities=10%  Similarity=0.110  Sum_probs=117.1

Q ss_pred             eEEEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|+++|+++++-..     ++.|.+||..+++.+..+........           + ......+.+.+.       
T Consensus        70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~-----------~-~~~~~~v~vd~~-------  130 (343)
T 2qe8_A           70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITL-----------S-NSFVNDLAVDLI-------  130 (343)
T ss_dssp             EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSC-----------T-TCCCCEEEEETT-------
T ss_pred             eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcc-----------c-ccccceEEEecC-------
Confidence            55699999986665433     57899999999997776643211000           0 001122333321       


Q ss_pred             cCCcEEEEEE----CCCeEEEEEccCCeEEEEecCCCC-----------------------------CCEEEEEEccCCC
Q 008041           84 LGSSLLVLGT----GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGS  130 (579)
Q Consensus        84 ~~~~~l~~~~----~~g~i~iwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~~~~~~  130 (579)
                        +..++++.    .++.|.+||+.+++....+ .+|.                             ..+.+++|+|+|+
T Consensus       131 --~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~  207 (343)
T 2qe8_A          131 --HNFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE  207 (343)
T ss_dssp             --TTEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred             --CCEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence              23344443    4678999999888765333 2221                             2368999999999


Q ss_pred             EEEEEeCCC-cEEEEeCC---CCc-----eee--EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041          131 CIYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       131 ~l~s~~~d~-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~  197 (579)
                      .++.+..++ .++.++..   .+.     ...  ...++......++++++|.++++..  +.|.+||..+++.......
T Consensus       208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~  287 (343)
T 2qe8_A          208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD  287 (343)
T ss_dssp             EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence            988887666 55555531   111     001  1112334567899999998888776  7999999866664332221


Q ss_pred             -CCCCEEEEEEecCCCEEEEEe
Q 008041          198 -HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       198 -h~~~v~~l~~s~~~~~l~s~~  218 (579)
                       +...+.+++|.++++.+++.+
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEC
T ss_pred             CceecCCeeEECCCCcEEEEeC
Confidence             245688999999988777665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.82  E-value=4.7e-06  Score=78.44  Aligned_cols=190  Identities=9%  Similarity=-0.023  Sum_probs=117.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++++-...+.|..+++..+... .+.........++++++++..++.+ ...+.|.++++..................
T Consensus        48 ~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~  126 (267)
T 1npe_A           48 KVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG  126 (267)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE
Confidence            334444445678999999876543 2222233568999999976666555 45678999998643322222222246789


Q ss_pred             EEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          165 MAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       165 l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ++++|++..+..+.     +.|..++.... ....+. ........+++++++..|+.+....+.|.++++......   
T Consensus       127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~---  202 (267)
T 1npe_A          127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---  202 (267)
T ss_dssp             EEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred             EEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE---
Confidence            99999655544433     47888887643 233332 233457899999988877776667789999998764322   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeeccc
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  290 (579)
                      ...  ...... ..++.       ++..|.++. ..+.|..+|..+++.+..+
T Consensus       203 ~~~--~~~~~P-~gi~~-------d~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          203 KVL--EGLQYP-FAVTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEE--ECCCSE-EEEEE-------ETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEe--cCCCCc-eEEEE-------eCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            111  111112 22232       345555555 4689999999988776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=2e-06  Score=78.09  Aligned_cols=174  Identities=10%  Similarity=0.145  Sum_probs=119.4

Q ss_pred             EEccCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspdg~~lasg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|++ +.++.+.+.+  ..|+++|..+|+....+.-...     .|..         ..   ...          ++.+.
T Consensus        27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-----~fge---------Gi---~~~----------~~~ly   78 (243)
T 3mbr_X           27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-----YFGA---------GI---VAW----------RDRLI   78 (243)
T ss_dssp             EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-----CCEE---------EE---EEE----------TTEEE
T ss_pred             EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-----ccee---------EE---EEe----------CCEEE
Confidence            6776 5555566654  4899999999999887742211     0100         00   000          13444


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (579)
                      .+.-.++.+.+||..+.+.+.++..+..  =++++  ++++.++.+..++.|.++|..+.+.+.++....     ..++.
T Consensus        79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           79 QLTWRNHEGFVYDLATLTPRARFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECCcCcEEEEEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            5555678899999999999887753322  24554  467777777778899999999998888776432     24566


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008041          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~~~~l~s~~  218 (579)
                      +.+. +|+.++..-  +.|.+.|.++++.+..+.-.             ....+.|+++|+++.|+.+|
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            7766 777666653  89999999999998877511             13568899999888777766

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.72  E-value=1.9e-06  Score=90.57  Aligned_cols=244  Identities=18%  Similarity=0.141  Sum_probs=147.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc-EEEEEEC-
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG-   94 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~~~~-   94 (579)
                      +..++.++.|+.|.-+|..+|+....+............+.+            +...  +..     ++. .+++++. 
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP------------~v~~--~~~-----~G~~~v~vg~~~  177 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP------------TIVK--DGK-----TGKVLLIHGSSG  177 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC------------EEEE--CTT-----TCCEEEEECCBC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC------------EEeC--CCc-----CCcEEEEEeccc
Confidence            456777888999999999999998877533211000000111            0000  000     011 5666653 


Q ss_pred             -----CCeEEEEEccCCeEEEEecCCCCCCE-----------------------------------------EEEEEccC
Q 008041           95 -----GGDVLALAVSAGQLKWRLSDCHPGGV-----------------------------------------SAISFATH  128 (579)
Q Consensus        95 -----~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------------------------------~~l~~~~~  128 (579)
                           +|.|+.+|..+|+.++..... ...+                                         ..+++.|+
T Consensus       178 ~e~~~~g~v~alD~~tG~~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~  256 (582)
T 1flg_A          178 DEFGVVGRLFARDPDTGEEIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE  256 (582)
T ss_dssp             GGGCCBCEEEEECTTTCCEEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT
T ss_pred             cccCCCCEEEEEECCCCCEEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC
Confidence                 688999999999988765321 0000                                         13456677


Q ss_pred             CCEEEEEeC--------------------C----CcEEEEeCCCCceeeEeec--CCC-------CeeEEEEc-cCCC--
Q 008041          129 GSCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRA--STK-------GISCMAVS-SDGK--  172 (579)
Q Consensus       129 ~~~l~s~~~--------------------d----~~v~iwd~~~~~~~~~~~~--~~~-------~v~~l~~~-p~g~--  172 (579)
                      ...++.+..                    |    +.|..+|..+|+.+..++.  |..       ...-+... .+|+  
T Consensus       257 ~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~  336 (582)
T 1flg_A          257 TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIV  336 (582)
T ss_dssp             TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEE
T ss_pred             CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEE
Confidence            777776653                    2    5899999999999888754  211       11112222 4674  


Q ss_pred             -EEEEEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------------EE
Q 008041          173 -MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------------RF  204 (579)
Q Consensus       173 -~l~~~~--~~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~  204 (579)
                       .++.++  |.++++|.++|+.+..+....             .++                                ..
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  416 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP  416 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred             EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence             666676  899999999999887664321             000                                13


Q ss_pred             EEEecCCCEEEEEec--------------------------------CCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041          205 MTFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       205 l~~s~~~~~l~s~~~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (579)
                      ++++|+...+++...                                .++.|..||+.+++..     ............
T Consensus       417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g  491 (582)
T 1flg_A          417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-----WEHKEHLPLWAG  491 (582)
T ss_dssp             CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-----EEEEESSCCCSC
T ss_pred             ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-----EEecCCCCCccc
Confidence            456666555544321                                2578889999888743     222222111111


Q ss_pred             EEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ...      ..+..++.++.||.++.||.++|+.+...+
T Consensus       492 ~~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          492 VLA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CEE------ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceE------eCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            111      245678889999999999999999886554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.72  E-value=1e-06  Score=80.74  Aligned_cols=173  Identities=9%  Similarity=0.080  Sum_probs=119.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|+ ++.++.+.+.+|.|+++|.++|+.+..+ -.. .    .|...            +..  .        ++.+..+
T Consensus        61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~----~FgeG------------it~--~--------g~~Ly~l  111 (268)
T 3nok_A           61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-N----IFAEG------------LAS--D--------GERLYQL  111 (268)
T ss_dssp             EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T----CCEEE------------EEE--C--------SSCEEEE
T ss_pred             EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C----cceeE------------EEE--e--------CCEEEEE
Confidence            666 3556667777889999999999987765 111 0    01100            000  0        1344444


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeEEE
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISCMA  166 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~l~  166 (579)
                      .-.++.+.+||..+.+.+.++..+  ..-++++  ++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.
T Consensus       112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            456788999999999998777532  2224444  578888887779999999999999888766422     1456777


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008041          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~~~~l~s~~  218 (579)
                      |. +|++++..-  +.|.+.|.++++.+.++.-.             ....+.|+++|+++.|+.+|
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            77 787666554  89999999999998877421             13568999999877666665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.71  E-value=7.2e-06  Score=79.58  Aligned_cols=249  Identities=14%  Similarity=0.085  Sum_probs=136.1

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccc--ccccccccccceEEeeecccccccccCCcE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++++++|+++.++..++.|..||..++.... +...............  ............+.+.+.         ...
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g~   93 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NNQ   93 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TTE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCC---------CCc
Confidence            4899999977788888999999987765432 2210000000000000  000000001123333321         334


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEe--cCC-CCCCEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCC
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDPL  147 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~--~~~-h~~~V~~l~~~~-~~~~l~s~~~-----------------d~~v~iwd~~  147 (579)
                      |+++...+.|..+|..++......  ..+ ......++++.+ +|+..++-..                 ++.|..||..
T Consensus        94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            677766666888988766432111  111 123578999999 8976665432                 3679999987


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecC--
Q 008041          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--  220 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~--  220 (579)
                      +++...... .......++++|+|+.++.+.   +.|++|++....  ....+....+ ...+++.++|++.++.. .  
T Consensus       174 ~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~-~~~  250 (322)
T 2fp8_A          174 TKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS-EEL  250 (322)
T ss_dssp             TTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE-EET
T ss_pred             CCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec-Ccc
Confidence            665433222 223457899999999766664   799999987521  1122221223 78899999998766653 2  


Q ss_pred             --------CCeEEEEEcCCCccccceeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          221 --------ERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       221 --------d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                              .+.|..+|.. ++..   ..+.....  ......+.+      .++...++...++.|..+++.
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred             cccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence                    3567777764 3211   11221111  122333333      355555555567788888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.70  E-value=1e-05  Score=86.79  Aligned_cols=198  Identities=14%  Similarity=0.156  Sum_probs=126.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+.++...............    ....  ....            .+..+++++.+|
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~~~v~v~~~dg  127 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD----AVNR--GVAL------------WGDKVYVGTLDG  127 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------EBTEEEEECTTS
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCcccccccccc----CCcc--ceEE------------ECCEEEEEcCCC
Confidence            446777778899999999999999887643221110000000    0000  0000            156788999999


Q ss_pred             eEEEEEccCCeEEEEecCCCC---CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCC------
Q 008041           97 DVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTK------  160 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~---~~V~~-l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~------  160 (579)
                      .|+.+|..+|+.+++......   ..+.+ ..+ .++ .++.++.      +|.|+.+|..+|+.+..+.....      
T Consensus       128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  205 (668)
T 1kv9_A          128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY  205 (668)
T ss_dssp             EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence            999999999999887743211   11111 011 134 5555543      58999999999999888753110      


Q ss_pred             -------------------------CeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEE
Q 008041          161 -------------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK  194 (579)
Q Consensus       161 -------------------------~v~~l~~~p~g~~l~~~~--~-------------------~i~vwd~~~~~~~~~  194 (579)
                                               ....++++|++..++.+.  +                   .|..+|.++|+.+..
T Consensus       206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~  285 (668)
T 1kv9_A          206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH  285 (668)
T ss_dssp             SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred             cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence                                     112478888888877775  3                   399999999999887


Q ss_pred             eec--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       195 ~~~--h~-------~~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ++.  |.       .+.....+..+|+   .++.++ .+|.++++|..+++..
T Consensus       286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             eecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence            764  22       3333334445675   466655 7999999999998754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.65  E-value=3.2e-05  Score=72.65  Aligned_cols=194  Identities=9%  Similarity=-0.056  Sum_probs=117.0

Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+++.|..+. .++.|.+++..++.....+.....                  ....+.+.+..        +.+
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~------------------~p~~ia~d~~~--------~~l   93 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG------------------SPEGIALDHLG--------RTI   93 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC------------------CEEEEEEETTT--------TEE
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC------------------CccEEEEEecC--------CeE
Confidence            458898776666554 467899999876543322211000                  11233333221        333


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC  164 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~-~~~~~v~~  164 (579)
                      +++-...+.|.++++...... .+..........++++|++..++.+..   .+.|..+++. +.....+. ........
T Consensus        94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG  171 (267)
T ss_dssp             EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred             EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence            444445677999998754332 222222246789999997767666654   3688888875 43333332 23346789


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      ++++|++..|..+.   +.|.++|.........+.+ ......+++.  +..++.+....+.|.++|..+++.
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence            99999887766665   7999999976544333333 2334566654  456666654678999999987763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=1.4e-05  Score=74.13  Aligned_cols=183  Identities=14%  Similarity=0.072  Sum_probs=123.6

Q ss_pred             EEEEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCee
Q 008041           88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      .++.++.   ++.|.++|+.+++.+..+.-+......++++.  ++.++.+. .++.+.++|..+++.+.++.....  .
T Consensus        33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~  108 (266)
T 2iwa_A           33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--D  108 (266)
T ss_dssp             EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--S
T ss_pred             eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--C
Confidence            4666654   46799999999998877642222233455554  55655554 688999999999999998864311  2


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      ...+++||+.++++.  +.|.++|..+.+.+.++.-..     ..++.+.|. +|. +++....++.|.+.|+.+++...
T Consensus       109 g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~  186 (266)
T 2iwa_A          109 GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLG  186 (266)
T ss_dssp             CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEE
T ss_pred             eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEE
Confidence            244667888777766  899999999998887775221     236788888 674 44544457899999999987541


Q ss_pred             ceeeeeee-----------cCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCc
Q 008041          237 ASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNI  284 (579)
Q Consensus       237 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~  284 (579)
                         ...+.           ........+.++     |+++.+++++ ..+++.+.++...
T Consensus       187 ---~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          187 ---WILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ---EEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ---EEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence               12221           112355777887     8887665555 5788888886543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.60  E-value=2.5e-05  Score=81.96  Aligned_cols=197  Identities=14%  Similarity=0.134  Sum_probs=120.1

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC
Q 008041           17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        17 g~~lasg~~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      +..+..++. ++.|.-+|. .+|+.+.++...............    ....  ....            .+..+++++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~~~v~v~~~  123 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----VVDR--GLAY------------GAGQIVKKQA  123 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------ETTEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccc----cccc--ccEE------------ECCEEEEEeC
Confidence            345666666 889999999 999999887533211000000000    0000  0000            1567889999


Q ss_pred             CCeEEEEEccCCeEEEEecCCC-C--CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC---
Q 008041           95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG---  161 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h-~--~~V~~-l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~---  161 (579)
                      ++.+..+|..+|+.+++..... .  ..+.+ ... .++ .++.++.      ++.|+.+|..+|+.+.++......   
T Consensus       124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~  201 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV  201 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             CCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence            9999999999999988764221 0  01111 111 134 5666654      799999999999988876542210   


Q ss_pred             -----------------------------------eeEEEEccCCCEEEEECC------------------eEEEEECCC
Q 008041          162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD  188 (579)
Q Consensus       162 -----------------------------------v~~l~~~p~g~~l~~~~~------------------~i~vwd~~~  188 (579)
                                                         ...++++++...+..+.+                  .|..+|.++
T Consensus       202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t  281 (571)
T 2ad6_A          202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT  281 (571)
T ss_dssp             TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred             ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence                                               023567776666665541                  599999999


Q ss_pred             CeeeEEeec--CC--------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          189 HKKMQKFSG--HP--------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       189 ~~~~~~~~~--h~--------~~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |+.+..++.  |.        .++. +...++|+   .++.++ .+|.++++|..+++..
T Consensus       282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI  339 (571)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence            998877753  21        2221 23335774   445554 7899999999988744

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.50  E-value=6.2e-06  Score=75.51  Aligned_cols=157  Identities=12%  Similarity=0.061  Sum_probs=103.8

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEE
Q 008041          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~  194 (579)
                      .-..++.|+ ++..+.+.+.+|.|+.+|+.+++.+..+ -. .........++++.+....   +.+.+||..+.+.+.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            345789987 3556677778899999999999988887 32 3333333334455554444   8999999999999999


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCce---eEEeEEecCCcccCCCcEEEEEE
Q 008041          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      +.-...   ...+++|++.|+.+. .++.|.++|..+.+...   .........   .+.-+.+      .+|+..+..-
T Consensus       132 i~~~~e---GwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~---~I~V~~~g~~v~~lNeLe~------~dG~lyanvw  198 (268)
T 3nok_A          132 TRYSGE---GWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG---AVQVKLRGQPVELINELEC------ANGVIYANIW  198 (268)
T ss_dssp             EECSSC---CCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE------ETTEEEEEET
T ss_pred             EeCCCc---eeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE---EEEeCCCCcccccccccEE------eCCEEEEEEC
Confidence            874322   234446788887775 58899999999876542   111111111   2233344      2665444444


Q ss_pred             cCCeEEEEEcCCceeeccc
Q 008041          272 ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~  290 (579)
                      .++.|.+.|.++++.+..+
T Consensus       199 ~s~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEE
T ss_pred             CCCeEEEEeCCCCcEEEEE
Confidence            5789999999999876544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.49  E-value=6.2e-06  Score=75.54  Aligned_cols=160  Identities=11%  Similarity=0.099  Sum_probs=106.2

Q ss_pred             CCCC--EEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC
Q 008041          116 HPGG--VSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD  188 (579)
Q Consensus       116 h~~~--V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~  188 (579)
                      |...  ..++.|+ ++..+.+++.+|  .|+.+|+.+++.+..+.-.. .+....+.++++.+....   +.+.+||..+
T Consensus        39 hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           39 HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            5443  5899998 666666777766  89999999999998876543 333433444455555554   8999999999


Q ss_pred             CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc---eeEEeEEecCCcccCCCc
Q 008041          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDDAGL  265 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  265 (579)
                      .+.+.++.-..   ....+++|++.|+.+. .++.|.++|..+.+...   ........   ..+.-+.+.      +|+
T Consensus       117 ~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---~I~V~~~g~~~~~lNELe~~------~G~  183 (262)
T 3nol_A          117 LRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---TITVTAHGEELPELNELEWV------DGE  183 (262)
T ss_dssp             CCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---EEECEETTEECCCEEEEEEE------TTE
T ss_pred             CcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---EEEeccCCccccccceeEEE------CCE
Confidence            99999987432   2244556787777765 57889999999876442   11121111   122223442      565


Q ss_pred             EEEEEEcCCeEEEEEcCCceeeccc
Q 008041          266 YVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       266 ~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ..+..-.++.|.+.|.++++.+..+
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEE
Confidence            4444445889999999999876544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.47  E-value=8.2e-05  Score=71.45  Aligned_cols=225  Identities=12%  Similarity=0.043  Sum_probs=122.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|+|+|+++++-..+++|..||..++ ....+.. ..                  ....+.+.+.         +.++
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~------------------~p~gia~~~d---------G~l~   86 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EG------------------KVSGLAFTSN---------GDLV   86 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SS------------------EEEEEEECTT---------SCEE
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CC------------------CceeEEEcCC---------CcEE
Confidence            3489999987666667889999987654 3322221 11                  1122333221         4544


Q ss_pred             EEEECC-C-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eeEee---------c
Q 008041           90 VLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR---------A  157 (579)
Q Consensus        90 ~~~~~~-g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~---------~  157 (579)
                      ++.... + .|..+|..+++...............++..+++..+++-..++.|+.+|...++. +....         .
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            433332 2 4777888887754222112223345666666554444444688999999765431 11110         1


Q ss_pred             CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .-...+.+  +|+++.++.+.   +.|+.|++.. ++.  ...+.. ......++++++|+++++.. ..+.|.+++.. 
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-  241 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-  241 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-
Confidence            11234555  88888776665   7999999875 322  122221 13456789999998766544 57889999875 


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  273 (579)
                      ++..   .+...........+++|...  .|++..|++++..
T Consensus       242 G~~~---~~~~~~~~~~~p~~~a~~g~--~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 RSTT---IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG  278 (306)
T ss_dssp             CCEE---EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred             CCEE---EEeecccccCCceEEEEecc--cCCCCEEEEECCC
Confidence            3321   11122222233455555310  0466666666543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.47  E-value=0.00028  Score=68.00  Aligned_cols=231  Identities=7%  Similarity=-0.036  Sum_probs=131.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeE
Q 008041           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      +|+.+.. ..|+..|+.++.....+...                   .....+.|.+..        +.++++-...+.|
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~-------------------~~p~g~~~d~~~--------~~ly~~D~~~~~I   54 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVAS--------NRIYWSDLSQRMI   54 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSC-------------------SSEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCC-------------------CceEEEEEEeCC--------CEEEEEECCCCcE
Confidence            4444443 46888898877654433211                   112244554432        3344444456789


Q ss_pred             EEEEccC---CeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008041           99 LALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (579)
Q Consensus        99 ~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l  174 (579)
                      ..+++.+   +.....+.........++++.+.+..++ +-...+.|.++|+........+.........++++|.+..+
T Consensus        55 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l  134 (316)
T 1ijq_A           55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  134 (316)
T ss_dssp             EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             EEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE
Confidence            9999876   1222222222224567899987555554 44567899999986443333333334577999999966555


Q ss_pred             EEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCcee
Q 008041          175 ATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       175 ~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      ..+.    +.|..++... .....+ ...-.....+++++++..|+.+-...+.|..+|+......   .+.........
T Consensus       135 y~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~  210 (316)
T 1ijq_A          135 YWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAH  210 (316)
T ss_dssp             EEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSS
T ss_pred             EEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCC
Confidence            4443    5788888753 333333 2234567899999988777776656789999998754322   22221111111


Q ss_pred             EEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      ...+++.      .+..+++-...+.|..++..+++.+
T Consensus       211 P~giav~------~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          211 PFSLAVF------EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             cEEEEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence            2233332      3455555556788999987776543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.41  E-value=5.6e-05  Score=82.30  Aligned_cols=191  Identities=11%  Similarity=0.029  Sum_probs=107.3

Q ss_pred             EEEEc-cCCCEEEEEeC-CC----cEEEEECCCC-eEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041           10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        10 ~~~fs-pdg~~lasg~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|| |||++||.+.. +|    +|+++|+.+| +.+..                    .+........|.+.      
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~~~~~~~~WspD------  231 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVSGTNGEIVWGPD------  231 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEEEECSCCEECSS------
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------cccCceeeEEEecC------
Confidence            45899 99999986653 23    4999999988 52110                    00011234556553      


Q ss_pred             ccCCcEEEEEECC-----CeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-e
Q 008041           83 KLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-L  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~-----g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~-~  151 (579)
                         +..|+....+     ..|+++++.++..  ...+...+.....++.|+|||++|+..+.   ...|+++|+.++. .
T Consensus       232 ---g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~  308 (751)
T 2xe4_A          232 ---HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH  308 (751)
T ss_dssp             ---TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred             ---CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence               4445555543     2588898877642  11111123345678899999999776553   3468889987752 2


Q ss_pred             e--eEe-ecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCC
Q 008041          152 L--GKF-RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       152 ~--~~~-~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                      .  ..+ ........++.|+.++.+++...      ..|..+|+.++..... +..|...+.--.+++.+..|+.....+
T Consensus       309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~  388 (751)
T 2xe4_A          309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA  388 (751)
T ss_dssp             CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred             ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence            2  333 33344555666554444444433      3788888875322222 333444333233444566666655567


Q ss_pred             Ce--EEEEEc
Q 008041          222 RY--IALWRT  229 (579)
Q Consensus       222 ~~--i~vwd~  229 (579)
                      +.  |.++++
T Consensus       389 g~~~l~~~dl  398 (751)
T 2xe4_A          389 GLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            75  455564

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.40  E-value=3.1e-05  Score=70.34  Aligned_cols=158  Identities=11%  Similarity=0.022  Sum_probs=103.1

Q ss_pred             CCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee
Q 008041          118 GGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM  192 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~  192 (579)
                      .-..++.|++ +..+.+.+.+|  .|+.+|+.+++.+..+.-... +......++++.+....   +.+.+||.++.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            4477999986 55556666654  899999999999988764433 33333334455555544   89999999999999


Q ss_pred             EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc---eeEEeEEecCCcccCCCcEEEE
Q 008041          193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       193 ~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~  269 (579)
                      .+++....   ...++++++.|+.+. .++.|.++|..+.+...   ........   ..+.-+.+      .+|+..+.
T Consensus        99 ~ti~~~~~---Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~---~I~V~~~g~~~~~lNeLe~------~~G~lyan  165 (243)
T 3mbr_X           99 ARFRYPGE---GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVG---SIKVTAGGRPLDNLNELEW------VNGELLAN  165 (243)
T ss_dssp             EEEECSSC---CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE------ETTEEEEE
T ss_pred             EEEeCCCC---ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEE---EEEEccCCcccccceeeEE------eCCEEEEE
Confidence            99874322   234456777777665 58899999999876442   11111111   12222333      25665544


Q ss_pred             EEcCCeEEEEEcCCceeeccc
Q 008041          270 ISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       270 ~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      .-.+..|.+.|.++++.+..+
T Consensus       166 vw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          166 VWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             ETTTTEEEEECTTTCBEEEEE
T ss_pred             ECCCCeEEEEECCCCCEEEEE
Confidence            446789999999999876543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.38  E-value=8e-05  Score=78.20  Aligned_cols=195  Identities=12%  Similarity=0.106  Sum_probs=117.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      ..++.++.++.|.-+|..+|+.+.++.............      ....  ....            .+..+++++.++.
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~------~~~~--g~a~------------~~~~v~~~t~dg~  128 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCD------VVNR--GAAI------------YGDKVFFGTLDAS  128 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSC------SCCC--CCEE------------ETTEEEEEETTTE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccc------cCCC--ccEE------------ECCEEEEEeCCCE
Confidence            345555654458999999999998876432211000000      0000  0000            1567889999999


Q ss_pred             EEEEEccCCeEEEEecCCC--------CCCEEEEEEc-cCCC-EEEEEe------CCCcEEEEeCCCCceeeEeecCCCC
Q 008041           98 VLALAVSAGQLKWRLSDCH--------PGGVSAISFA-THGS-CIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~~~h--------~~~V~~l~~~-~~~~-~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      |..+|..+|+.+++.....        ..++.  .=. .+|+ .+++++      .++.|+.+|..+|+.+.........
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~  206 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGH  206 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTC
T ss_pred             EEEEECCCCCEEeeecCCCCCcCcccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccc
Confidence            9999999999988764221        11221  100 1233 566654      3789999999999988765432100


Q ss_pred             e-----------------------------------------eEEEEccCCCEEEEEC----------------------
Q 008041          162 I-----------------------------------------SCMAVSSDGKMLATAA----------------------  178 (579)
Q Consensus       162 v-----------------------------------------~~l~~~p~g~~l~~~~----------------------  178 (579)
                      +                                         ..++++|+..+++.+.                      
T Consensus       207 ~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d  286 (582)
T 1flg_A          207 MGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYD  286 (582)
T ss_dssp             EEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCC
T ss_pred             cccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccC
Confidence            0                                         2356667666666433                      


Q ss_pred             ----CeEEEEECCCCeeeEEeec--CCC----CEEE-EEEe---cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          179 ----GQLKTFNCSDHKKMQKFSG--HPG----AVRF-MTFS---DNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       179 ----~~i~vwd~~~~~~~~~~~~--h~~----~v~~-l~~s---~~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                          +.|..+|.++|+.+..++.  |..    .+.. +.+.   .+|+   .++.++ .+|.++++|..+++..
T Consensus       287 ~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  359 (582)
T 1flg_A          287 SLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQ  359 (582)
T ss_dssp             CTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEe
Confidence                4799999999999887753  321    1111 2222   4674   555555 7999999999988744

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.33  E-value=0.00019  Score=69.46  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=115.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEec-C---------C--------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-D---------C--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~---------~--------h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~  147 (579)
                      +.+++++..++.|..|+..+++...... .         +        ....+.++++.+++..|+.+...+.|..+|..
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~  109 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE  109 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence            5567888889999999988765431110 0         0        01357899999833356666555668899976


Q ss_pred             CCceeeEeec-----CCCCeeEEEEcc-CCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCE
Q 008041          148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV  202 (579)
Q Consensus       148 ~~~~~~~~~~-----~~~~v~~l~~~p-~g~~l~~~~-------------------~~i~vwd~~~~~~~~~~~~h~~~v  202 (579)
                      ++.. ..+..     ....+..+++.| +|++.++..                   +.|..||..+++....... ....
T Consensus       110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p  187 (322)
T 2fp8_A          110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVP  187 (322)
T ss_dssp             CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCC
T ss_pred             CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccC
Confidence            5532 22221     113578899999 998877642                   4688899877764322222 2334


Q ss_pred             EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc----------
Q 008041          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----------  272 (579)
Q Consensus       203 ~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------  272 (579)
                      ..++|+|++++|+.+....+.|.+|++.............  ...  ...++++     ++|.+.++...          
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~  258 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV  258 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence            6799999998776664457899999987643211111111  122  4556666     88886666544          


Q ss_pred             CCeEEEEEc
Q 008041          273 TGVCYIWYG  281 (579)
Q Consensus       273 dg~i~iwd~  281 (579)
                      .+.|..+|.
T Consensus       259 ~~~v~~~d~  267 (322)
T 2fp8_A          259 DPKGIKFDE  267 (322)
T ss_dssp             EEEEEEECT
T ss_pred             ccEEEEECC
Confidence            356777765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.30  E-value=0.0011  Score=66.03  Aligned_cols=192  Identities=8%  Similarity=-0.057  Sum_probs=114.2

Q ss_pred             cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      .++.+-...+.|+.+++....   ....+.........++++.+.+..|+ +-...+.|.+.++........+.......
T Consensus       125 ~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P  204 (400)
T 3p5b_L          125 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP  204 (400)
T ss_dssp             EEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCE
T ss_pred             ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCc
Confidence            333444456778888887521   11122233445688999988555554 44567889999986554443444344568


Q ss_pred             eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ..|+++|.+..|+.+.    +.|...++............-.....|++++++..|+.+-...+.|..+|+......   
T Consensus       205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---  281 (400)
T 3p5b_L          205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---  281 (400)
T ss_dssp             EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---
T ss_pred             ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---
Confidence            9999999665555544    578888886543333333334567899999988877776656788999998765422   


Q ss_pred             eeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      .+.... ....... +.+.      .+..+.+-...+.|..+|..+++.+.
T Consensus       282 ~~~~~~~~l~~P~g-l~v~------~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          282 TILEDEKRLAHPFS-LAVF------EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             EEEECSSTTSSEEE-EEEE------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             EEEeCCCCCCCCEE-EEEe------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            222211 1122222 2222      33444555567789999977775543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.29  E-value=0.0015  Score=63.83  Aligned_cols=189  Identities=6%  Similarity=-0.079  Sum_probs=112.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++++-...+.|+.+++..+...... ........++++.+.+..|+ +-...+.|.+.++........+...-.....
T Consensus        85 ~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~  163 (349)
T 3v64_C           85 ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  163 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred             cEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence            334444446677999998876543222 22234467889987655554 4456778999997644333233333456799


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++++|.+..|..+.    +.|..+++.... ...+ ...-...+.|+++|++..|+.+-...+.|..+++......   .
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~---~  239 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---A  239 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE---E
Confidence            99999666555554    568888876432 2333 2233457899999887777776656788999998764322   1


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      +.. ...... ..+.+.      ++...++-...+.|..++..+++..
T Consensus       240 ~~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          240 VIS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEe-CCCCCc-eEEEEE------CCEEEEecCCCCeEEEEEccCCCcc
Confidence            111 111111 223332      3344444445778888886666543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.28  E-value=0.00017  Score=75.57  Aligned_cols=147  Identities=16%  Similarity=0.201  Sum_probs=97.1

Q ss_pred             CcEEEEEECCC----------------eEEEEEccCCeEEEEecCCCC---------CCEEEEEEc-cCC---CEEEEEe
Q 008041           86 SSLLVLGTGGG----------------DVLALAVSAGQLKWRLSDCHP---------GGVSAISFA-THG---SCIYSAG  136 (579)
Q Consensus        86 ~~~l~~~~~~g----------------~i~iwd~~~~~~~~~~~~~h~---------~~V~~l~~~-~~~---~~l~s~~  136 (579)
                      ..++++++.++                .|..+|..+|+.++.+...|.         .++. +... .+|   ..++.++
T Consensus       252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~  330 (599)
T 1w6s_A          252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD  330 (599)
T ss_dssp             TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred             CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence            56777777653                799999999999988754432         2232 2222 467   4677788


Q ss_pred             CCCcEEEEeCCCCceeeEeecCC------------C-Ce--------------------------eEEEEccCCCEEEEE
Q 008041          137 ADGMVCEIDPLTGSLLGKFRAST------------K-GI--------------------------SCMAVSSDGKMLATA  177 (579)
Q Consensus       137 ~d~~v~iwd~~~~~~~~~~~~~~------------~-~v--------------------------~~l~~~p~g~~l~~~  177 (579)
                      .+|.++++|..+|+.+.......            + ++                          ..++++|+..++++.
T Consensus       331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~  410 (599)
T 1w6s_A          331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG  410 (599)
T ss_dssp             TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred             CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence            99999999999999887654211            0 11                          235666665554431


Q ss_pred             ----------------------------------------C-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041          178 ----------------------------------------A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       178 ----------------------------------------~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                                                              . |.|..||+.+++.+.+... ..+...-.....+..++.
T Consensus       411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~  489 (599)
T 1w6s_A          411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFY  489 (599)
T ss_dssp             EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEE
T ss_pred             ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEE
Confidence                                                    2 5788999999988777642 222221112334556777


Q ss_pred             EecCCCeEEEEEcCCCccc
Q 008041          217 SAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~  235 (579)
                      ++ .|+.++.||.++++..
T Consensus       490 gt-~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          490 GT-LDGYLKARDSDTGDLL  507 (599)
T ss_dssp             EC-TTSEEEEEETTTCCEE
T ss_pred             EC-CCCeEEEEECCCCCEE
Confidence            66 7999999999999854

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.28  E-value=0.00057  Score=67.86  Aligned_cols=190  Identities=6%  Similarity=-0.086  Sum_probs=114.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++++-...+.|+.+++..+.....+ ........++++.+.+..|+ +-...+.|.+.++........+...-.....
T Consensus       128 ~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~g  206 (386)
T 3v65_B          128 ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  206 (386)
T ss_dssp             TEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcE
Confidence            344444456677999998876543333 22233457888987655554 4445678998887644333333333357799


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      ++++|.+..|..+.    +.|+.++.............-.....|+|+|++..|+.+-...+.|..+++......   .+
T Consensus       207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~  283 (386)
T 3v65_B          207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AV  283 (386)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EE
T ss_pred             EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EE
Confidence            99999776666554    578888876543322223334457899999877777776656788999998754322   11


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      .. ...... ..+.+.      .+..+++-...+.|..++..+++..
T Consensus       284 ~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          284 IS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EE-CCCCCc-eEEEEE------CCEEEEeeCCCCeEEEEECCCCcce
Confidence            11 111112 223332      3444555555778888886666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.24  E-value=0.0013  Score=72.31  Aligned_cols=246  Identities=8%  Similarity=0.127  Sum_probs=146.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .++..+++|.+- .|+.++-|..|+..++.... +..... .          .+-....+.++....        
T Consensus       310 ~~i--~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~-~----------~~l~~~~V~~i~~d~--------  366 (795)
T 4a2l_A          310 RSV--RSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKN-IRNIPY-K----------NSLSDNVVSCIVEDK--------  366 (795)
T ss_dssp             SCE--EEEEECTTSCEE-EEESSSCEEEECGGGGSSEE-ECCCTT-S----------SSCSCSSEEEEEECT--------
T ss_pred             CcE--EEEEEeCCcCEE-EEECCCCeEEeCCCcccceE-EcCCCC-C----------CCCCCCeeEEEEECC--------
Confidence            346  344778888644 46666668888866554322 211000 0          000011222332221        


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                        ...+.+|+.++-|..||..++....-...       -....|.++...++|+.+..|+.++-|..||..+++......
T Consensus       367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~  444 (795)
T 4a2l_A          367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ  444 (795)
T ss_dssp             --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred             --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence              34478899988899999988765432211       123579999998888757777777779999988776433221


Q ss_pred             ----cCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041          157 ----ASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       157 ----~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                          .....|.++...++|++.+...+-+.+||..+++.......      ....|.++...++|+..+. + . +-+..
T Consensus       445 ~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t-~-~Gl~~  521 (795)
T 4a2l_A          445 RNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-G-E-EGLSV  521 (795)
T ss_dssp             TTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-E-S-SCEEE
T ss_pred             CCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-e-C-CceEE
Confidence                12357899999999987776667789999887754322111      2357899999999886654 3 3 45888


Q ss_pred             EEcCCCccccceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          227 WRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       227 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      |+..+.+. ..... .....+...+.++..+     ++|...+ ++.. -+..||.++.+
T Consensus       522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDKQ  573 (795)
T ss_dssp             EEEETTEE-EECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTTE
T ss_pred             EeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCCc
Confidence            98876542 00000 0001122345556555     6777544 4444 57889877654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.20  E-value=0.00011  Score=78.79  Aligned_cols=242  Identities=10%  Similarity=0.028  Sum_probs=126.3

Q ss_pred             ceEEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041            8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         8 ~l~~~fsp-dg~~lasg~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ...+++.| +|+.++.|+.+.           .+.+||..+++....-...               ......+.......
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------------~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------------TKHDMFCPGISMDG  252 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------------CSCCCSSCEEEECT
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------------CCCCCccccccCCC
Confidence            34567888 888888887543           4778888776532110000               00000010111111


Q ss_pred             cccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEe-CC-----CcEEEEeCC
Q 008041           76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAG-AD-----GMVCEIDPL  147 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~-~d-----~~v~iwd~~  147 (579)
                               ++.++++|+. ++.+.+||+.+++....- ..+... -.++++.++|+.++.|+ .+     ..+.+||..
T Consensus       253 ---------~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          253 ---------NGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             ---------TSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ---------CCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence                     1667777774 457999999988654221 112221 13455667899988888 34     569999988


Q ss_pred             CCceeeEe----ecCCCCeeEEEEccCCCEEEEE----------C-CeEEEEECCCCeeeEEeecCCC---------CEE
Q 008041          148 TGSLLGKF----RASTKGISCMAVSSDGKMLATA----------A-GQLKTFNCSDHKKMQKFSGHPG---------AVR  203 (579)
Q Consensus       148 ~~~~~~~~----~~~~~~v~~l~~~p~g~~l~~~----------~-~~i~vwd~~~~~~~~~~~~h~~---------~v~  203 (579)
                      +++-...-    ......-....+..+++.++.+          . ..+..||..+.........+..         .-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            76532210    0000000001112344444444          2 5688999987764433322211         223


Q ss_pred             EEEEec-CCCEEEEEecCCC-----------eEEEEEcCCCccccceeee--eeecCceeEEeEEecCCcccCCCcEEEE
Q 008041          204 FMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       204 ~l~~s~-~~~~l~s~~~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (579)
                      ++.|.. +++.++.+|. ++           .+.+||..+....   .+.  .+...... .....-     |+++.++.
T Consensus       403 av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~R~~-~~~~~l-----~~g~i~v~  472 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFARTF-HTSVVL-----PDGSTFIT  472 (656)
T ss_dssp             EEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSCCBS-CEEEEC-----TTSCEEEE
T ss_pred             eEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCCccc-CCeEEC-----CCCCEEEE
Confidence            444543 6666666653 22           5777887765422   111  11122111 222232     78999999


Q ss_pred             EEcC-----------CeEEEEEcCCc
Q 008041          270 ISET-----------GVCYIWYGQNI  284 (579)
Q Consensus       270 ~~~d-----------g~i~iwd~~~~  284 (579)
                      |+.+           ..+.+||..+.
T Consensus       473 GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          473 GGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCcccCcCcCCCCcccceEEEcCCCC
Confidence            8764           46788887654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.20  E-value=0.0012  Score=63.57  Aligned_cols=190  Identities=6%  Similarity=-0.078  Sum_probs=112.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++.+-...+.|..+++..+.....+.........++++.+.+..| ++-...+.|.++++........+.........
T Consensus        47 ~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~g  126 (318)
T 3sov_A           47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA  126 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccE
Confidence            34444555567799999877632111111222356788998755554 44456788999997643322223334457789


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++++|.+..|..+.    +.|..++..... ...+ ...-...+.|+++|++..|+.+-...+.|..+++......   .
T Consensus       127 iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~  202 (318)
T 3sov_A          127 IALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ---A  202 (318)
T ss_dssp             EEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E
T ss_pred             EEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE---E
Confidence            99999655544443    578888876432 2233 2233456899999987777776656789999998754322   1


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      +.. ...... ..+++.      .+..+.+-...+.|..++..+++..
T Consensus       203 ~~~-~~~~~P-~glav~------~~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          203 VVK-GSLPHP-FALTLF------EDILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEC-SCCSCE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             Eec-CCCCCc-eEEEEe------CCEEEEEecCCCeEEEEECCCCCce
Confidence            111 111122 223332      2344444445788999998777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.19  E-value=0.0012  Score=60.77  Aligned_cols=196  Identities=13%  Similarity=0.132  Sum_probs=126.2

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~  146 (579)
                      ..+-++|.+..        +.+.++...++.|...|.. ++.+.++.-+-....-++++.+++.++++.-.++.+.++++
T Consensus        28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            35566666542        5567778888889999998 77776653233356889999998877666557788999987


Q ss_pred             CCCce---eeEee------cCCCCeeEEEEccCCCEEEEEC--C--eEEEEEC-CCCeeeEEee-------cCCCCEEEE
Q 008041          147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNC-SDHKKMQKFS-------GHPGAVRFM  205 (579)
Q Consensus       147 ~~~~~---~~~~~------~~~~~v~~l~~~p~g~~l~~~~--~--~i~vwd~-~~~~~~~~~~-------~h~~~v~~l  205 (579)
                      .....   +....      .....+..++|+|+++.|+++.  .  .|+.|+- .....+..+.       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   22221      1234678999999997777766  3  5555551 0111222221       123457899


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC-------ceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------AVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  278 (579)
                      +++|....++..+..++.+.++|.... ..   ....+...       -.....+++.     ++|+ |...++-+.++.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGN-IYIVSEPNRFYR  248 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCC-EEEEETTTEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCC-EEEEcCCceEEE
Confidence            999987777777768889999997754 22   12222211       1234667777     8887 555588888888


Q ss_pred             EEc
Q 008041          279 WYG  281 (579)
Q Consensus       279 wd~  281 (579)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.14  E-value=0.0025  Score=69.88  Aligned_cols=239  Identities=12%  Similarity=0.056  Sum_probs=142.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++..+++|++. .|+.++-|..||..++....-.........          +-....+.++...+         ++.+
T Consensus       360 ~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~---------~g~~  419 (795)
T 4a2l_A          360 SCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESAR----------GIGSNNIKAVYVDE---------KKSL  419 (795)
T ss_dssp             EEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEET---------TTTE
T ss_pred             EEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCccc----------CCCCccEEEEEEcC---------CCCE
Confidence            444778888754 466676789999887765432211000000          00011222222221         1444


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec------CC
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST  159 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~------~~  159 (579)
                      |.+|+.++-|..||..+++...-...   .....|.++...++|...+ |+.+ -+..||..+++.......      ..
T Consensus       420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVS  497 (795)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred             EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCC
Confidence            78899888899999998876422210   1345799999988887544 4454 488999877654332211      23


Q ss_pred             CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee-------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ..|.++...++|++.+...+-+..||..+++.  .+.       .....|.++...++|...+++  .. -+..||..+.
T Consensus       498 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          498 KQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT--RE-GFYCFNEKDK  572 (795)
T ss_dssp             CCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE--SS-CEEEEETTTT
T ss_pred             ceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe--CC-CceeECCCCC
Confidence            57899999999987776667788999887765  332       123568899999999866554  24 5888998765


Q ss_pred             ccccceeeeee--ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          233 KKQSASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      +..    .+..  .-+...+..+..+     ++|...+++  ++-|..||.++.+
T Consensus       573 ~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          573 QIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             EEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE--TTEEEEEETTTTE
T ss_pred             cEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc--CCceEEEcCCCCc
Confidence            422    1111  1122334455554     667655544  3567788877654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.12  E-value=0.0017  Score=62.05  Aligned_cols=183  Identities=13%  Similarity=0.098  Sum_probs=108.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C-cEEEEeCCCCceeeEeec-CCCCe
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRA-STKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~-~v~iwd~~~~~~~~~~~~-~~~~v  162 (579)
                      +.++++-..++.|..||...+... ...  ....+.++++.++|+.+++.... + .|..+|..+++....... .....
T Consensus        43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~  119 (306)
T 2p4o_A           43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  119 (306)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence            555555557888999998764332 221  23468999999999865554332 2 477788777765433221 12234


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEee---------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~---------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      ..++..+++..+++-.  +.|+.+|..+++. +....         +.-...+.+  +|++++|+.+....+.|..|++.
T Consensus       120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            5566666666555553  8999999876531 21111         111234555  88888777776678899999987


Q ss_pred             C-CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      . ++..........    .....++++     ++|++.++....+.|.+||..
T Consensus       198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECCC
Confidence            5 322111111111    122345555     788776666667788888753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0032  Score=60.49  Aligned_cols=181  Identities=12%  Similarity=0.051  Sum_probs=111.7

Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCC---CceeeE-eecCCCCeeEE
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLT---GSLLGK-FRASTKGISCM  165 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~---~~~~~~-~~~~~~~v~~l  165 (579)
                      +-+....|+..|+.+++....+ . ....+.+++|+++++.++.+ ..++.|+.+++..   +..... +...-..+..+
T Consensus         5 l~~~~~~I~~i~~~~~~~~~~~-~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl   82 (316)
T 1ijq_A            5 FFTNRHEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (316)
T ss_dssp             EEECBSSEEEEETTSCCCEEEE-C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEECCCeEEEEECCCcceEehh-c-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence            3344467999999887654333 2 34568999999876665555 4568999999875   122222 32223456889


Q ss_pred             EEccCCCEEEEE-C--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeee
Q 008041          166 AVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       166 ~~~p~g~~l~~~-~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-~~i~vwd~~~~~~~~~~~~~  241 (579)
                      ++++.+..|..+ .  +.|.+++.........+.........++++|.+..++.+.... +.|...++......   . .
T Consensus        83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~---~-~  158 (316)
T 1ijq_A           83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---S-L  158 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---E-E
T ss_pred             EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE---E-E
Confidence            999755555444 3  7999999875433322333345678999999777666654333 67888887654321   1 1


Q ss_pred             eeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  283 (579)
                       ....-.....++++     +++..|..+. ..+.|..+|.+.
T Consensus       159 -~~~~~~~P~gla~d-----~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 -VTENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             -ECSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred             -EECCCCCceEEEEe-----ccCCEEEEEECCCCeEEEEecCC
Confidence             11222334566676     7777776665 467899999763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.00084  Score=67.63  Aligned_cols=148  Identities=13%  Similarity=0.120  Sum_probs=85.8

Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++++| ++..|..+...+.|+.+|..++....... ....+                  ..++|.+.         +..
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P------------------~~ia~d~~---------G~~  192 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKV------------------RTICWTHE---------ADS  192 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCE------------------EEEEECTT---------SSE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCc------------------ceEEEeCC---------CCE
Confidence            458998 45556666555889999998776554332 11111                  22333322         554


Q ss_pred             EEEEECC-C----eEEEEEccCCeE-EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-CCC
Q 008041           89 LVLGTGG-G----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK  160 (579)
Q Consensus        89 l~~~~~~-g----~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~  160 (579)
                      ++++... +    .+..++...... ...+.  ......+++++| +|..+++-..++.|+.++...+.....+.. ...
T Consensus       193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            5555542 2    244444332211 01111  123456788999 666555555778999999876654232222 223


Q ss_pred             CeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008041          161 GISCMAVSSDGKMLATAA---GQLKTFNCS  187 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---~~i~vwd~~  187 (579)
                      ....++|+|+|++|..+.   +.|+.++..
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            578999999999665554   789998765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.002  Score=63.87  Aligned_cols=195  Identities=11%  Similarity=-0.042  Sum_probs=112.0

Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..++|++.+..|.... ..+.|..++...+.....+......+.                  .++..+..        +.
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~------------------glavd~~~--------g~  172 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG------------------GLAVDWVH--------DK  172 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC------------------CEEEETTT--------TE
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc------------------EEEEEeCC--------Ce
Confidence            3457887655555444 467788888776544332221111111                  11221111        33


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCeeE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGISC  164 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-~~v~iwd~~~~~~~~~~-~~~~~~v~~  164 (579)
                      ++++-...+.|.+.++...... .+.........++++.|.+..++.+. .. +.|..+++. |.....+ ...-.....
T Consensus       173 lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNG  250 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred             EEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCeee
Confidence            4444445567888887654432 22233345679999999777666554 34 688888875 4333333 233346789


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      |+++|++..|..+.   +.|..+|+........+.........+++. .+ .++.+....+.|..++..+++
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCc
Confidence            99998777777665   789999987543332333334456778883 34 344444467888888865554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.07  E-value=0.0025  Score=62.20  Aligned_cols=144  Identities=11%  Similarity=-0.035  Sum_probs=89.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCe
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-~~v~iwd~~~~~~~~~~-~~~~~~v  162 (579)
                      +.+.++-...+.|.+.++...... .+.........++++.|.+..++.+. .. +.|..+++. |.....+ ...-...
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~P  205 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWP  205 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESCCSSCSCE
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCc
Confidence            344444445677888888755432 22233345679999999666655544 44 789889875 4333333 2233467


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +.++++|++..|..+.   +.|..+|+........+.........+++. .+ .++.+....+.|..++..+++
T Consensus       206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence            8999999777777665   789999987543332233334456777773 34 444444467788888865554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.06  E-value=0.0026  Score=58.53  Aligned_cols=189  Identities=7%  Similarity=0.059  Sum_probs=112.4

Q ss_pred             EEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ++|+|++..| ++...++.|...|.. ++....+.-.               +.  .....+++...         +.++
T Consensus        32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g~--~D~EGIa~~~~---------g~~~   84 (255)
T 3qqz_A           32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------FV--KDLETIEYIGD---------NQFV   84 (255)
T ss_dssp             EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------SC--SSEEEEEECST---------TEEE
T ss_pred             eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------CC--CChHHeEEeCC---------CEEE
Confidence            4999987655 456678889999987 8877766311               10  11222333321         4434


Q ss_pred             EEEECCCeEEEEEccCCeE---EEEec-----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEee--
Q 008041           90 VLGTGGGDVLALAVSAGQL---KWRLS-----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFR--  156 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~---~~~~~-----~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~~~~~~~~~--  156 (579)
                      ++.-.++.+.++++.....   .....     ...+...-+++|+|+++.|+++.......+|.+.   ....+..+.  
T Consensus        85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            4444566788888765432   11111     1245567999999999888877765554555443   111222221  


Q ss_pred             -----cCCCCeeEEEEccCCCEEEE-EC--CeEEEEECCCCeeeEEeecC---------CCCEEEEEEecCCCEEEEEec
Q 008041          157 -----ASTKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGH---------PGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       157 -----~~~~~v~~l~~~p~g~~l~~-~~--~~i~vwd~~~~~~~~~~~~h---------~~~v~~l~~s~~~~~l~s~~~  219 (579)
                           .+...+.+++++|....+.+ ..  +.+..+|.+ ++.+..+.-.         -.....|+|.++|+.+++ + 
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s-  241 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S-  241 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E-
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c-
Confidence                 12336789999996554444 44  789999965 5555444211         125688999999985554 5 


Q ss_pred             CCCeEEEEEc
Q 008041          220 GERYIALWRT  229 (579)
Q Consensus       220 ~d~~i~vwd~  229 (579)
                      +-+.++.+..
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            5666666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.95  E-value=0.0087  Score=57.22  Aligned_cols=203  Identities=14%  Similarity=0.201  Sum_probs=118.5

Q ss_pred             ceEEeeec-ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC----CCE--E-EEEe-C--
Q 008041           69 TCMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GSC--I-YSAG-A--  137 (579)
Q Consensus        69 ~~~~w~~~-~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~----~~~--l-~s~~-~--  137 (579)
                      ....|..+ ++.      .++++.....+-+.+||+ .|+.+..+..   +.++.+..-|+    |+.  + ++.. .  
T Consensus        28 dpavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~   97 (355)
T 3amr_A           28 DPAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEG   97 (355)
T ss_dssp             EEEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred             CccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence            44678743 333      455666667788999999 7877766522   56777776663    222  2 3333 3  


Q ss_pred             CCcEEEEeC--CCCceeeEeec------CC-CCeeEEEE--ccC-CC-EEEEEC--CeEEEEECC-------CCeeeEEe
Q 008041          138 DGMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNCS-------DHKKMQKF  195 (579)
Q Consensus       138 d~~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--~p~-g~-~l~~~~--~~i~vwd~~-------~~~~~~~~  195 (579)
                      +++|.+|++  .++. +..+..      .. ..+..+++  +|. ++ ++++..  |.+..|++.       +.+.+++|
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999966  3333 444421      11 45677777  774 54 344444  888888772       34667777


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCc-EEEEEEc
Q 008041          196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGL-YVLAISE  272 (579)
Q Consensus       196 ~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~~~~~  272 (579)
                      .- .+.+..+...+....|+.+- ++.-|..++.+.........+....  +-...+..+..-.   .++++ +|+++++
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQ  251 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQ  251 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEG
T ss_pred             cC-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcC
Confidence            64 45788899998888888875 6766666664432211111222221  1111233333310   04555 7777774


Q ss_pred             -CCeEEEEEcC-Cceee
Q 008041          273 -TGVCYIWYGQ-NIEEL  287 (579)
Q Consensus       273 -dg~i~iwd~~-~~~~~  287 (579)
                       +++..+||.+ +.+.+
T Consensus       252 G~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          252 GNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             GGTEEEEEESSTTCCEE
T ss_pred             CCCEEEEEECCCCCcEE
Confidence             7799999986 44443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.94  E-value=0.0033  Score=63.31  Aligned_cols=189  Identities=11%  Similarity=0.085  Sum_probs=104.8

Q ss_pred             EEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041           10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++|+|+  +..|..+...+.|+.+|..++....... ....+                  ..+++.+.         +.
T Consensus       143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P------------------~giavd~d---------G~  194 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQC------------------ADVNFTLN---------GD  194 (433)
T ss_dssp             EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCE------------------EEEEECTT---------CC
T ss_pred             eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCc------------------cEEEECCC---------CC
Confidence            4589985  3445555444899999998887765432 11111                  22333221         44


Q ss_pred             EEEEEECCC----e-EEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-ecC-C
Q 008041           88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAS-T  159 (579)
Q Consensus        88 ~l~~~~~~g----~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~-~  159 (579)
                       |+++...+    . +...+...+........ ......+++++| +|..+++-..++.|+.+|..++.....+ ... .
T Consensus       195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence             44444322    1 33333322211001111 123456788999 6655555556788999998877663332 221 1


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeecC---------------CCCEEEEEE---------e
Q 008041          160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S  208 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s  208 (579)
                      .....++|+|+|+.|..+.   +.|+.++..  ++..  ...+.+.               -.....+++         .
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            2334799999999666655   789998865  3321  1222221               123567888         5


Q ss_pred             cCCCEEEEEecCCCeEEEEEc
Q 008041          209 DNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       209 ~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      ++|..+++- ...+.|+.++.
T Consensus       353 ~~g~lyvaD-~~n~~I~~~~~  372 (433)
T 4hw6_A          353 DEYDFYFCD-RDSHTVRVLTP  372 (433)
T ss_dssp             CCEEEEEEE-TTTTEEEEECT
T ss_pred             CCCcEEEEE-CCCCEEEEECC
Confidence            666555544 36778988885

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.92  E-value=0.0077  Score=65.18  Aligned_cols=190  Identities=9%  Similarity=-0.054  Sum_probs=111.2

Q ss_pred             cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041           87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      .++++-...+.|+.+++....   ....+.........+|++.+.++.|+.+ ...+.|.+.++........+.......
T Consensus       437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P  516 (791)
T 3m0c_C          437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP  516 (791)
T ss_dssp             EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred             eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCc
Confidence            334444455678888876531   1112223234567789998877665554 467899999986443333333344568


Q ss_pred             eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ..|+++|.+..|+.+.    +.|...++........+...-.....|++++.+..|+.+-...+.|...++......   
T Consensus       517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~---  593 (791)
T 3m0c_C          517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---  593 (791)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---
T ss_pred             ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE---
Confidence            9999999755555544    578888886544333333334568899999877777776556778999998765432   


Q ss_pred             eeeeee-cCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceee
Q 008041          239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEEL  287 (579)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  287 (579)
                      .+.... .....+.+..+       . .+|+.+. ..+.|...|..+++.+
T Consensus       594 ~v~~~~~~l~~P~glav~-------~-~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          594 TILEDEKRLAHPFSLAVF-------E-DKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEEECTTTTSSEEEEEEE-------T-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEecCCCccCCCCEEEEe-------C-CEEEEEECCCCEEEEEeCCCCcce
Confidence            221110 11122222222       2 3444444 4678888887666543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.91  E-value=0.002  Score=61.66  Aligned_cols=189  Identities=13%  Similarity=0.226  Sum_probs=116.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC--
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--   94 (579)
                      ..+++....++-+.|||+ +|+.++.+..  ..++.+-..+.+               ....+     .-.++++...  
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~---------------~l~g~-----~~dla~as~R~~   96 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDF---------------PLNGK-----KVDIAAASNRSE   96 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEE---------------EETTE-----EEEEEEEEECST
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccc---------------ccCCc-----eEeEEEEeCCCC
Confidence            345555566778999999 7888887753  122222111110               00000     0112333333  


Q ss_pred             -CCeEEEEEc--cCCeEEEEecC---C--CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceeeE
Q 008041           95 -GGDVLALAV--SAGQLKWRLSD---C--HP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLGK  154 (579)
Q Consensus        95 -~g~i~iwd~--~~~~~~~~~~~---~--h~-~~V~~l~~--~~~-~~-~l~s~~~d~~v~iwd~~-------~~~~~~~  154 (579)
                       ++.|.+|++  .++. +..+..   .  .. ..+..+++  +|. +. +++....+|.+..|++.       +++.+++
T Consensus        97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence             466999976  4444 323311   0  11 55777888  664 44 57778889999999883       3466777


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-----CCeeeEEee-cC-CCCEEEEEEe--cCCC-EEEEEecCCC
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGER  222 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-----~~~~~~~~~-~h-~~~v~~l~~s--~~~~-~l~s~~~~d~  222 (579)
                      |.- .+.+..+.+.+....|..+.  .-|..|+.+     +++.+..+. ++ ...+..|++.  ++++ ||++++..++
T Consensus       176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            774 45788999998888888887  347777755     345565542 22 2468888884  5555 7888776788


Q ss_pred             eEEEEEcC
Q 008041          223 YIALWRTD  230 (579)
Q Consensus       223 ~i~vwd~~  230 (579)
                      +..+||..
T Consensus       255 s~~Vydr~  262 (355)
T 3amr_A          255 SYAIYDRQ  262 (355)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            99999986

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.0045  Score=62.27  Aligned_cols=141  Identities=11%  Similarity=0.139  Sum_probs=92.1

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C----cEEEEeCCCCcee--eEeecCC
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST  159 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~----~v~iwd~~~~~~~--~~~~~~~  159 (579)
                      ..|+++...+.|+.+|+.++...... . .......++|+++|++++.+... +    .+..++. .+...  ..+.. .
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~~~-~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~  225 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVSTVY-S-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-G  225 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEEEE-C-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-C
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEEEe-c-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-C
Confidence            34666666678999999887764332 2 44568999999999976666542 2    3444443 33222  22322 2


Q ss_pred             CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      .....++++| +|.++++-.  +.|+.|+..++....... +.......++|+|+|++|+.+....+.|..++...
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            3567889999 666665543  799999998775422222 12234678999999997666655678999988764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.90  E-value=0.00062  Score=74.05  Aligned_cols=183  Identities=10%  Similarity=0.089  Sum_probs=103.7

Q ss_pred             CcEEEEEEC-CC----eEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce--e
Q 008041           86 SSLLVLGTG-GG----DVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL--L  152 (579)
Q Consensus        86 ~~~l~~~~~-~g----~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~--~  152 (579)
                      +..|+.+.. +|    .|+++|+.++ +.+.....   ....++.|+|||+.|+....|     ..|+.+++.++..  .
T Consensus       186 G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~  262 (751)
T 2xe4_A          186 HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV  262 (751)
T ss_dssp             TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE
T ss_pred             CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE
Confidence            555665443 33    3999999998 63211111   113467899999988777665     3688889877642  2


Q ss_pred             eEeec-CCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCe-ee--EEe-ecCCCCEEEEEEecCCCEEEEEecCC-
Q 008041          153 GKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK-KM--QKF-SGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (579)
Q Consensus       153 ~~~~~-~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~-~~--~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d-  221 (579)
                      ..+.. .......+.|+|||++|+...     ..|+++|+.++. ..  ..+ .+......++.|+. |+.|+..+..+ 
T Consensus       263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~  341 (751)
T 2xe4_A          263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG  341 (751)
T ss_dssp             EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred             EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence            33332 223567889999999888654     478999998752 12  333 33445555666554 55554444333 


Q ss_pred             ---CeEEEEEcCCCcccccee-eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe--EEEEEc
Q 008041          222 ---RYIALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWYG  281 (579)
Q Consensus       222 ---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~  281 (579)
                         ..|..+++.+....  .. +.. ......+..+.+.      ++..+++...+|.  |+++++
T Consensus       342 a~~~~L~~~d~~~~~~~--~~~li~-~~~~~~l~~~~~~------~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          342 AVNHKLLIAPRGQPSDW--SHVLVD-HSEDVFMESIAVR------SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CTTCEEEEEETTSTTCC--CCEEEC-CCSSEEEEEEEEC------SSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCcEEEEEcCCCcccc--eeeEEC-CCCCcEEEEEEEE------CCEEEEEEEeCCEEEEEEEec
Confidence               35677776542111  11 111 1222233333332      3455666677885  555564

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.84  E-value=0.01  Score=56.90  Aligned_cols=145  Identities=10%  Similarity=-0.038  Sum_probs=90.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEe-ecCCCCe
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~-~~~~~~v  162 (579)
                      +.++++-...+.|.++++...... .+.........++++.|.+..++.+.  ..+.|...++. |.....+ ...-...
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~P  168 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWP  168 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCc
Confidence            344444445677888888754332 22223445679999999766666665  35788888875 4433333 2233467


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      +.++++|++..|..+.   +.|..+|+..........+.......+++..+  .++.+....+.|..++..+++.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence            8999999777777765   79999998743322222323445567777533  3443344678899998876653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.81  E-value=0.017  Score=57.38  Aligned_cols=183  Identities=11%  Similarity=0.046  Sum_probs=115.4

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC----ceeeEeecCCCCee
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG----SLLGKFRASTKGIS  163 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~----~~~~~~~~~~~~v~  163 (579)
                      +++-+....|+..++.........  .....+.+++|++.+..|+.+. ..+.|+.+++...    .....+........
T Consensus        85 ~ll~~~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEeccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            344445578999998876654333  2446789999998766665554 5688999998642    22233333345778


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-CCeEEEEEcCCCcccccee
Q 008041          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+++++.+..|+.+.   +.|.+.+++.......+.........|++.|.+.+|+.+... .+.|...++......   .
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~---~  239 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---S  239 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE---E
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE---E
Confidence            999998555555444   799999987654443344344557899999976666665322 367888888764322   1


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCC
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  283 (579)
                      +  ....-.....++++     +++..|..+.. .+.|..+|++.
T Consensus       240 ~--~~~~l~~P~glavd-----~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          240 L--VTENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             E--ECSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred             E--EECCCCceEEEEEE-----eCCCEEEEEECCCCEEEEEeCCC
Confidence            1  11222334566676     77777777654 67899998754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.0053  Score=67.14  Aligned_cols=185  Identities=10%  Similarity=0.114  Sum_probs=117.6

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCC
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKG  161 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~  161 (579)
                      ..+.+|+.++-|..||..++....-..  ......|.++...++|. +..|+.++-+..+|..+++.. .+..   ....
T Consensus       374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~  451 (781)
T 3v9f_A          374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLD  451 (781)
T ss_dssp             SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCC
T ss_pred             CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCe
Confidence            447888877889999987665431100  12346799999887776 555777677999998766543 3321   3457


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC-----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      |.++...++|.+.+...+-+..||..+++........     ...|.++...++|...+.+  .++-+..|+..+.+.. 
T Consensus       452 v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~~-  528 (781)
T 3v9f_A          452 VRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT--FGGGVGIYTPDMQLVR-  528 (781)
T ss_dssp             EEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE--SSSCEEEECTTCCEEE-
T ss_pred             EEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE--cCCCEEEEeCCCCeEE-
Confidence            9999999988876666677999998876543322222     3578999999999866554  3344788887765422 


Q ss_pred             ceeeeee--ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          237 ASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       237 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                        . +..  ..+...+.++...     ++|...+ ++.+|.+..||.++++
T Consensus       529 --~-~~~~~~l~~~~i~~i~~d-----~~g~lWi-~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          529 --K-FNQYEGFCSNTINQIYRS-----SKGQMWL-ATGEGLVCFPSARNFD  570 (781)
T ss_dssp             --E-ECTTTTCSCSCEEEEEEC-----TTSCEEE-EETTEEEEESCTTTCC
T ss_pred             --E-ccCCCCCCCCeeEEEEEC-----CCCCEEE-EECCCceEEECCCCCc
Confidence              1 110  1123344555554     6666544 4556665888877654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.80  E-value=0.0036  Score=63.05  Aligned_cols=141  Identities=11%  Similarity=0.121  Sum_probs=88.5

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCce-eeEeecCCC
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK  160 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~-~~~~~~~~~  160 (579)
                      ..|+++...+.|+.+|+.++......  .......+++|+++|+ |+.+...+     .+...+...+.. ...+. ...
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~  228 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR  228 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence            44666655588999999888775332  2445689999999999 55554321     233333322211 01222 234


Q ss_pred             CeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       161 ~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ....++++| +|.++++-.  +.|+.+|..++.....+.  +....-..++|+|++++|+.+....+.|..+++..
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            557789999 666555543  789999998776533332  11222346999999997666655678999988764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.79  E-value=0.00053  Score=73.42  Aligned_cols=227  Identities=5%  Similarity=-0.083  Sum_probs=121.7

Q ss_pred             EEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +++.++|++++.|+. ++.+.+||..+++-...-.     ..            ...........+         ++.++
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-----~~------------~~R~~~s~~~~~---------dg~iy  301 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-----MQ------------VARGYQSSATMS---------DGRVF  301 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-----CS------------SCCSSCEEEECT---------TSCEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-----CC------------ccccccceEEec---------CCeEE
Confidence            477889999999985 5689999988775432110     00            000011111111         16677


Q ss_pred             EEEE-CC-----CeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCc
Q 008041           90 VLGT-GG-----GDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPLTGS  150 (579)
Q Consensus        90 ~~~~-~~-----g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d---------~~v~iwd~~~~~  150 (579)
                      ++|+ .+     .++.+||+.+++....-    ....... ....+..++..++.++.+         ..+..||..+..
T Consensus       302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            7777 33     45999999988754220    0000000 001122345555555444         356788887665


Q ss_pred             eeeEeecCC---------CCeeEEEEcc-CCCEEEEEC--C-----------eEEEEECCCCeeeEEe--ecCCCC-EEE
Q 008041          151 LLGKFRAST---------KGISCMAVSS-DGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGA-VRF  204 (579)
Q Consensus       151 ~~~~~~~~~---------~~v~~l~~~p-~g~~l~~~~--~-----------~i~vwd~~~~~~~~~~--~~h~~~-v~~  204 (579)
                      .........         ..-.++.+.. ++++++.|+  +           .|.+||..+.+.....  ..+... -.+
T Consensus       381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~  460 (656)
T 1k3i_A          381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  460 (656)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence            333222111         1223444433 777888776  1           6888888776544332  112222 234


Q ss_pred             EEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          205 MTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       205 l~~s~~~~~l~s~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      ....|+++.++.+|..+          ..+.+||..+.+-.   .+.....+.....+....     |+|+.++.|+.
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG~  530 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGGG  530 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEECC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCCC
Confidence            56678999988887421          46899998776422   111222222222333343     78998888875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.77  E-value=0.007  Score=57.35  Aligned_cols=152  Identities=9%  Similarity=0.045  Sum_probs=101.9

Q ss_pred             ceEEeeecccccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCC----CC--CCEEEEEE---ccCCCEEEEEe--
Q 008041           69 TCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG--  136 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~----h~--~~V~~l~~---~~~~~~l~s~~--  136 (579)
                      .+..|...         ...+++++ ..|.|..||+..+........+    ..  ..+.++.|   .|+++++++..  
T Consensus        16 E~~~wd~~---------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           16 EDTIYDRT---------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             SCEEEETT---------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cCccCcCC---------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            35667654         34456666 7899999999866543333222    11  14689999   68877766543  


Q ss_pred             -----------CCCcEEEEeCC---CCceeeEee--c-----------CCCCeeEEEEccCCCEEEEEC---CeEEEEEC
Q 008041          137 -----------ADGMVCEIDPL---TGSLLGKFR--A-----------STKGISCMAVSSDGKMLATAA---GQLKTFNC  186 (579)
Q Consensus       137 -----------~d~~v~iwd~~---~~~~~~~~~--~-----------~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~  186 (579)
                                 .+..|..||+.   +++.+....  .           ....+..++..++|+..++++   +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       26789999998   787765543  1           112578999999999999876   45666665


Q ss_pred             CCCeeeEEee-c-----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          187 SDHKKMQKFS-G-----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       187 ~~~~~~~~~~-~-----h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ... .+..+. .     .....+.|+++|+|..|++... .+.+..+|+..
T Consensus       167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            433 333221 1     1123679999999999988874 89999999884

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.75  E-value=0.00014  Score=78.09  Aligned_cols=192  Identities=8%  Similarity=-0.051  Sum_probs=106.7

Q ss_pred             EEEEE-ECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           88 LLVLG-TGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        88 ~l~~~-~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      .|+.+ ...+.|+.+++.+    .... .+.........++++.+.+..| ++-...+.|.++++........+......
T Consensus       419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~  497 (699)
T 1n7d_A          419 RIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK  497 (699)
T ss_dssp             EEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC
T ss_pred             eEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC
Confidence            34444 3456788888875    2211 1211122345678887655444 44456788999998644433333333346


Q ss_pred             eeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ...|+++|.+..|+.+.    +.|+.+++........+...-...+.|+|+|++..|+.+-...+.|.++++......  
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~--  575 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--  575 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--
Confidence            68899999766555544    577777765332221222223445789999987666665556788999998754322  


Q ss_pred             eeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                       .+..... ...... +.+.     .+ ..+++....+.|..++..+++.+..+
T Consensus       576 -~~~~~~~~~~~P~g-lavd-----~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          576 -TILEDEKRLAHPFS-LAVF-----ED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             -EECCCSSSCSSCCC-CEEE-----TT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             -EEEecCCcCCCceE-eEEE-----CC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence             1111110 111112 2222     22 34444455789999998888766544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.011  Score=59.76  Aligned_cols=152  Identities=11%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             EEEEcc-CCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEe-------eeccccc
Q 008041           10 LTSFSP-ALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK   80 (579)
Q Consensus        10 ~~~fsp-dg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-------~~~~~~~   80 (579)
                      .++|+| ++. ++++-...+.|++.|..++............               ......+.|       .+.    
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~---------------~~~p~~ia~~~~~~~~d~~----  203 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP---------------TNRIRSIAFNKKIEGYADE----  203 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS---------------CSBEEEEEECCCBTTTBCT----
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc---------------cCCCcEEEEeecccccCCC----
Confidence            459998 344 4444444567999999888776544321100               001223333       221    


Q ss_pred             ccccCCcEEEEEECCC-------eEEEEEccC-CeEE-----EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeC
Q 008041           81 KRKLGSSLLVLGTGGG-------DVLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDP  146 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g-------~i~iwd~~~-~~~~-----~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~  146 (579)
                           +..++++...+       .|.+++... +...     ..+. . -....+++++|++.. +++-..++.|+.+|+
T Consensus       204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                 55566665554       266666443 2221     1111 1 123457788995555 445557788999998


Q ss_pred             C-------CCce-----------eeE-eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008041          147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS  187 (579)
Q Consensus       147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~  187 (579)
                      .       ++..           ... +.. .......|+|+|+|+.|..+.   +.|+.++..
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            7       4543           112 222 233568999999999666654   788886543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.012  Score=64.20  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=115.2

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK  160 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~  160 (579)
                      ..|.+|+.++-+..+|..+++...... ......|.++...++|. +..|+. +-+..||..+++........     ..
T Consensus       418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~  495 (781)
T 3v9f_A          418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLEN  495 (781)
T ss_dssp             SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred             CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccc
Confidence            346778887889999998887642211 11346799999888775 555555 55899998776543322222     35


Q ss_pred             CeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      .|.++...++|.+.+... +-+..||..+++. ..+..    ....|.++...++|...++ + .+|.+..||..+.+..
T Consensus       496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T-~~Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-T-GEGLVCFPSARNFDYQ  572 (781)
T ss_dssp             CEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-E-TTEEEEESCTTTCCCE
T ss_pred             eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-E-CCCceEEECCCCCcEE
Confidence            789999999998877775 6688899877653 33321    1356889998888886654 3 3565488888766422


Q ss_pred             cceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                          .+...  -+...+..+...     ++|...+ ++.+| |..|+.++.+
T Consensus       573 ----~~~~~~gl~~~~i~~i~~d-----~~g~lW~-~t~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          573 ----VFQRKEGLPNTHIRAISED-----KNGNIWA-STNTG-ISCYITSKKC  613 (781)
T ss_dssp             ----EECGGGTCSCCCCCEEEEC-----SSSCEEE-ECSSC-EEEEETTTTE
T ss_pred             ----EccccCCCCCceEEEEEEC-----CCCCEEE-EcCCc-eEEEECCCCc
Confidence                11111  122233444444     5666544 44555 7777776543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.66  E-value=0.015  Score=62.91  Aligned_cols=143  Identities=8%  Similarity=-0.078  Sum_probs=89.4

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeE-eecCCCCee
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGK-FRASTKGIS  163 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~v~  163 (579)
                      .++++-...+.|.+.++...... .+.........+|++.|.+.+|+.+..  .+.|...++. |..... +...-....
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN  561 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred             cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCce
Confidence            44445555677999988765433 232334456899999998666666542  3689999985 444443 333335789


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .|++++.+..|+.+.   +.|..+++........+...  -.....|++.  +.+|+.+-...+.|...+..+++
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence            999998777777765   68999998654433333322  2234456653  33555554456777777766654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.63  E-value=0.0079  Score=57.13  Aligned_cols=183  Identities=10%  Similarity=0.085  Sum_probs=92.8

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCe---EEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce
Q 008041           86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~  151 (579)
                      +.+++.|+.+     ..+.+||+.+++   ...... .........+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            5566666654     359999998876   321110 111111222222  56666666643     3588999877643


Q ss_pred             ee--EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC
Q 008041          152 LG--KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 ~~--~~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      ..  .+........++.  -++++++.|+       ..+.+||..+.+-...  ++...... ++.. -+++.++.+|..
T Consensus       141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~  216 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGGFD  216 (301)
T ss_dssp             EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBC
T ss_pred             EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeCCC
Confidence            22  2221111222222  2677777775       4689999988754322  11111111 2222 256666666532


Q ss_pred             ----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041          221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  284 (579)
                          -..+.+||+.+.+-.   .+..+........++.       -+++.++.|+.+     ..+.+||.++.
T Consensus       217 ~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence                246889999876532   2212222211112222       255666666654     35677777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.59  E-value=0.015  Score=56.28  Aligned_cols=138  Identities=12%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             EEEEEEC---CCeEEEEEccCC--eE--EEEecCCCCCCEEEEEEccCCCEEEEEe-----------------CCCcEEE
Q 008041           88 LLVLGTG---GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCE  143 (579)
Q Consensus        88 ~l~~~~~---~g~i~iwd~~~~--~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-----------------~d~~v~i  143 (579)
                      .|+++..   +..|.+|++..+  ..  +..+....-...+++.+.++|.+.++..                 ..|.|+.
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            3444443   345777776643  22  2233222234689999999998666543                 1245666


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEec-CCCEEEE
Q 008041          144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLS  216 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s  216 (579)
                      +|.  ++. ..+...-...+.++|+||++.+..+.   +.|+.|++.. ++.  ...+ ...+..-.+++.+ +|++.++
T Consensus       208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred             EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence            664  332 22222234678999999999888876   7999999863 322  2233 2345567888888 5887665


Q ss_pred             EecCC-CeEEEEEcC
Q 008041          217 SAVGE-RYIALWRTD  230 (579)
Q Consensus       217 ~~~~d-~~i~vwd~~  230 (579)
                      +. .+ +.|..|+..
T Consensus       284 ~~-~~g~~v~~~~P~  297 (355)
T 3sre_A          284 CH-PNGMRIFFYDAE  297 (355)
T ss_dssp             EE-SCHHHHHSCCTT
T ss_pred             ec-CCceEEEEECCC
Confidence            54 33 344444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.51  E-value=0.059  Score=52.67  Aligned_cols=194  Identities=12%  Similarity=0.103  Sum_probs=121.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecCC----C
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~----~  160 (579)
                      ...|++-. ...+.++|+.+...+....  ...+|.--.|-.+. .++-. .+..|+-|++.. ..+++.|.-|.    .
T Consensus        77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~  151 (494)
T 1bpo_A           77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (494)
T ss_dssp             SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccc
Confidence            34455554 6779999999988776553  23456666775544 34433 366799999864 35666676554    3


Q ss_pred             CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEEEecC---CCeEEE
Q 008041          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG---ERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~~---d~~i~v  226 (579)
                      .|..-..+++.++++..+         |.+.+|..+.+ .-..+.||...-..+.+..+  ...+++-+..   .+.+++
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi  230 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence            788888899999888654         68999998765 34566788655444433211  1123332212   268999


Q ss_pred             EEcCCCc-c-cc--cee---eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          227 WRTDGVK-K-QS--ASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       227 wd~~~~~-~-~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      -++.... . ..  ...   .+.-+......-.+..+     +.-..+...+.-|.+++||++|+..+...
T Consensus       231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeeeee
Confidence            9985531 0 00  000   11111223344444554     66678888999999999999999887543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.47  E-value=0.074  Score=56.08  Aligned_cols=183  Identities=13%  Similarity=0.029  Sum_probs=109.8

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +|+. +..+.|+..++.+......+.-..-..+.+++|++.+..++.+ ..++.|+.+++........+......+..++
T Consensus         8 ~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            3444 4678899999987654333322234568999999976666554 4678999999865443333333334678899


Q ss_pred             EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCccccceeeee
Q 008041          167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       167 ~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +++.+..|..+.   +.|.+.++........+...-.....|++.|...+|+.+-. ..+.|...++......   .+. 
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l~-  162 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TLV-  162 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE-
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EEE-
Confidence            998766555554   78999998754332222233455789999986556665531 2467877777665422   111 


Q ss_pred             eecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ  282 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  282 (579)
                        ..-.....+.++     +++..|..+.. .+.|..+|+.
T Consensus       163 --~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          163 --PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             --CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETT
T ss_pred             --CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCC
Confidence              122223445554     55555554433 4566666654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.42  E-value=0.0086  Score=56.72  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=101.8

Q ss_pred             EEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeE-eec----CC--CCeeEEEE---ccCCCEEEEEC----------
Q 008041          120 VSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK-FRA----ST--KGISCMAV---SSDGKMLATAA----------  178 (579)
Q Consensus       120 V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~-~~~----~~--~~v~~l~~---~p~g~~l~~~~----------  178 (579)
                      .-++.|++....|+.++ ..++|..||...+..... +..    ..  ..+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34678988667777776 789999999875644333 221    11  14689999   68988887532          


Q ss_pred             -----CeEEEEECC---CCeeeEEee--c-----------CCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCcccc
Q 008041          179 -----GQLKTFNCS---DHKKMQKFS--G-----------HPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQS  236 (579)
Q Consensus       179 -----~~i~vwd~~---~~~~~~~~~--~-----------h~~~v~~l~~s~~~~~l~s~~~~d-~~i~vwd~~~~~~~~  236 (579)
                           +.+..||+.   +++.+....  .           -......++..++|+..++.+. - +.|...+....... 
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~pdG~~~~-  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSADGKTVS-  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECTTSCCEE-
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeCCCCEEe-
Confidence                 468999999   787765442  1           1134789999999998887763 5 66666665543211 


Q ss_pred             ceeeeeeec----CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          237 ASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                         .+....    ...-...+.+.     |+|..|++....|.+..||+.
T Consensus       173 ---~~~~~~~~~~~~~G~nGIv~~-----pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          173 ---TFAWESGNGGQRPGYSGITFD-----PHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ---EEEECCCCSSSCCSCSEEEEE-----TTTTEEEEESSSSSEEEEECS
T ss_pred             ---eeeecCCCcccccCcceEEEe-----CCCCEEEEEcCCCeEEEEcCC
Confidence               111111    11123455665     999998888779999999987

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.42  E-value=0.037  Score=52.40  Aligned_cols=183  Identities=11%  Similarity=0.077  Sum_probs=93.1

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeeE
Q 008041           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~  154 (579)
                      +.+++.|+.++     .+.+||+.+++-..... .........+.+  ++..++.|+.++     .+.+||+.+.+-...
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            55666666443     48999998877532211 111111222222  566777777553     578889876643222


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC-
Q 008041          155 --FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG-  220 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~-  220 (579)
                        +....... +++. -++++++.|+         ..+.+||..+.+-...  ++...... ++.. -+++.++.+|.. 
T Consensus       140 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~  215 (302)
T 2xn4_A          140 APMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDG  215 (302)
T ss_dssp             CCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSS
T ss_pred             CCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCC
Confidence              22111122 2222 2677777775         2488999988754322  22111111 2222 256666666532 


Q ss_pred             ---CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  284 (579)
                         ...+.+||+.+.+-.   .+..+........++.       -+++.++.|+.++     .+.+||..+.
T Consensus       216 ~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          216 PLVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVCA-------VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CcccceEEEEeCCCCCEe---eCCCCCCccccCeEEE-------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence               136889998876532   1112221111111222       2556667776543     4788887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.42  E-value=0.044  Score=57.72  Aligned_cols=186  Identities=9%  Similarity=0.013  Sum_probs=107.1

Q ss_pred             EEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008041           88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFR-ASTKGISC  164 (579)
Q Consensus        88 ~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~  164 (579)
                      .|+.+. ..+.|..+++........+.........++++.+.++.++.+ ...+.|.+.++.. .....+. ..-.....
T Consensus        53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~  131 (619)
T 3s94_A           53 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRA  131 (619)
T ss_dssp             EEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCC
T ss_pred             EEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCce
Confidence            344444 456688888876532122222233568999999866655554 4678999999864 3333332 34456789


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      |+++|.+..|..++    +.|...++............-.....|++++++..|+.+-...+.|...++.......  ..
T Consensus       132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~  209 (619)
T 3s94_A          132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VV  209 (619)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred             EEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--EE
Confidence            99999755555444    4677777654332222223345678999999877777765567789999887654321  11


Q ss_pred             e-eeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceee
Q 008041          241 L-AMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEEL  287 (579)
Q Consensus       241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~  287 (579)
                      . .+.++   . .+.+.     .+  .|+.+ ...+.|...|..+++..
T Consensus       210 ~~~~~~P---~-gi~~~-----~~--~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          210 KGSLPHP---F-ALTLF-----ED--ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             ------C---C-CEEES-----SS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred             eCCCCCc---e-EEEEe-----CC--EEEEecCCCCEEEEEECCCCccc
Confidence            1 12222   1 22232     23  45544 45778999998777543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.42  E-value=0.032  Score=53.97  Aligned_cols=136  Identities=11%  Similarity=0.111  Sum_probs=84.9

Q ss_pred             CCCeEEEEEccCC--eEEE-EecC----CCCCCEEEEEEcc--CCC-EEEEEe-C--CCcEEEEeCCCC-c---eeeEee
Q 008041           94 GGGDVLALAVSAG--QLKW-RLSD----CHPGGVSAISFAT--HGS-CIYSAG-A--DGMVCEIDPLTG-S---LLGKFR  156 (579)
Q Consensus        94 ~~g~i~iwd~~~~--~~~~-~~~~----~h~~~V~~l~~~~--~~~-~l~s~~-~--d~~v~iwd~~~~-~---~~~~~~  156 (579)
                      .+|.|.++|+.+.  +... .+..    .......++.+.+  +|. +|+.+. .  +.+|.+|++..+ .   .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999999742  3211 1211    1234678888876  454 455553 2  467778776543 2   223343


Q ss_pred             cCC-CCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041          157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       157 ~~~-~~v~~l~~~p~g~~l~~~~-------------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                      +.. ...+.+.+.++|.+.++..                   |.|+-+|.  ++ +..+...-...+.++|+||++.++.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence            322 3688999999999877753                   34555554  33 2223223345689999999998888


Q ss_pred             EecCCCeEEEEEcCCC
Q 008041          217 SAVGERYIALWRTDGV  232 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~  232 (579)
                      +....+.|..|++...
T Consensus       238 adt~~~~I~~~~~~~~  253 (355)
T 3sre_A          238 AELLAHKIHVYEKHAN  253 (355)
T ss_dssp             EEGGGTEEEEEEECTT
T ss_pred             EeCCCCeEEEEEECCC
Confidence            7667789999998753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.41  E-value=0.038  Score=52.48  Aligned_cols=183  Identities=11%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE
Q 008041           86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~  154 (579)
                      +.+++.|+.+    ..+.+||+.+++....-. .........+.+  +++.++.|+.+      ..+.+||+.+.+-...
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            5566666654    569999999886532211 111111222222  66677777655      4689999887643222


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEec
Q 008041          155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~-----------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                        +....... +++. -++++++.|+           ..+.+||..+.+-...  +...... .++.. -+++.++.+|.
T Consensus       134 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~  209 (306)
T 3ii7_A          134 PSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVF-VKDKIFAVGGQ  209 (306)
T ss_dssp             CCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCE
T ss_pred             CCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEE-ECCEEEEEeCC
Confidence              21111111 2222 3677777775           2388999988754322  1111111 12222 25666666553


Q ss_pred             CC----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041          220 GE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       220 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  284 (579)
                      ..    ..+.+||+.+.+-.   .+..+........++.       -+++.++.|+.+     ..+.+||..+.
T Consensus       210 ~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          210 NGLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAA-------VGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ETTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEE-------ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEE-------ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            21    35889998876532   1112222222222222       255677777643     46777887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.35  E-value=0.087  Score=50.59  Aligned_cols=178  Identities=11%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE-EeCCCCceeeEe-ecCCCCeeEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE-IDPLTGSLLGKF-RASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~i-wd~~~~~~~~~~-~~~~~~v~~l~  166 (579)
                      +++++.+|.|+. ....|+.-.....++...+.++.+.+++.+++.+ .+|.++. +|- .+..-..+ ......+..+.
T Consensus       135 ~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~  211 (327)
T 2xbg_A          135 AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMG  211 (327)
T ss_dssp             EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEE
T ss_pred             EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeE
Confidence            444445565432 2222332222223456679999999988877665 4555544 342 12222222 22345788999


Q ss_pred             EccCCCEEEEEC-CeEEEEECCCCeeeEEee-c---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          167 VSSDGKMLATAA-GQLKTFNCSDHKKMQKFS-G---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       167 ~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~-~---h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +.|++++++.+. |.+++.+.+.++.-..+. .   +...+..+.+.+++..++++  .++.+ .+..+.++.-  ..+.
T Consensus       212 ~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g--~~g~i-~~S~DgG~tW--~~~~  286 (327)
T 2xbg_A          212 FTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG--GAGAL-LCSQDGGQTW--QQDV  286 (327)
T ss_dssp             ECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE--STTCE-EEESSTTSSC--EECG
T ss_pred             ECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe--CCCeE-EEeCCCCccc--EEcC
Confidence            999999888877 888776533344332222 1   22358889999888766654  46766 4555544322  1111


Q ss_pred             ee-ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          242 AM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       242 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      .. ..+.. +..+.+.     ++ ..+++++.+|.|.-++-
T Consensus       287 ~~~~~~~~-~~~v~~~-----~~-~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          287 DVKKVPSN-FYKILFF-----SP-DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GGTTSSSC-CCEEEEE-----ET-TEEEEECSTTEEEEECC
T ss_pred             ccCCCCCC-eEEEEEE-----CC-CceEEEcCCceEEEEcC
Confidence            00 01222 2334443     33 44667778898877653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.25  E-value=0.0011  Score=71.20  Aligned_cols=143  Identities=8%  Similarity=-0.064  Sum_probs=83.0

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS  163 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~-~~~~~~v~  163 (579)
                      .++++-...+.|.++++...... .+.........++++.|.+.+|+.+..  .+.|..+++. |.....+ ...-...+
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN  543 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSCSSCC
T ss_pred             cEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCCCCcc
Confidence            33444445677888888765443 232222345678899997666555442  2678888864 3333332 22234567


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .|+|+|++..|+.+.   +.|..+++........+.  ........|++..+  .++.+....+.|..++..+++
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence            899999876666655   689999986433222222  11122345555443  444444456788888877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.20  E-value=0.044  Score=52.13  Aligned_cols=183  Identities=7%  Similarity=0.004  Sum_probs=91.3

Q ss_pred             CcEEEEEEC----C-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008041           86 SSLLVLGTG----G-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~----~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~  150 (579)
                      +.+++.|+.    +     ..+.+||+.+++...... .........+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            455566554    2     358999998876532110 111111222223  56666666533     468889987664


Q ss_pred             eeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEec
Q 008041          151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       151 ~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      -...  +........++.+  ++++++.|+       +.+.+||..+.+-..  .+....... ++... +++.++.+|.
T Consensus       149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~  224 (308)
T 1zgk_A          149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGY  224 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCB
T ss_pred             EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCC
Confidence            3221  2211112222222  677777776       368999998775322  111111111 22222 5666666653


Q ss_pred             C----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041          220 G----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       220 ~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  284 (579)
                      .    -..+.+||+.+.+-.   .+..+........++.       -+++.++.|+.+     ..+.+||..+.
T Consensus       225 ~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETWT---FVAPMKHRRSALGITV-------HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCccceEEEEeCCCCcEE---ECCCCCCCccceEEEE-------ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            2    146899998876532   1112222111112222       245666666643     35677776654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.13  E-value=0.036  Score=54.16  Aligned_cols=147  Identities=13%  Similarity=0.188  Sum_probs=94.8

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe-----------
Q 008041          127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----------  190 (579)
Q Consensus       127 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~-----------  190 (579)
                      .+|..++.+ .++.||.-++.....-+.++..    ...+..+..+|+|++||..+ ..|.|..+..+.           
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            455555555 4577887777644444444433    22678899999999999998 899998887321           


Q ss_pred             -eeEEeec------CCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccc-----eeeeeeecCceeEEeEEe
Q 008041          191 -KMQKFSG------HPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       191 -~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  255 (579)
                       ..+.+.-      ...+|..+.|+|-   +..|++-. .|+.|++||+......+.     ...+........+..++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence             1223321      2577999999995   34677776 699999999987432211     011122222345667778


Q ss_pred             cCCcccCCCcEEEEEE--cCCeEEEEE
Q 008041          256 DNGGVDDAGLYVLAIS--ETGVCYIWY  280 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~--~dg~i~iwd  280 (579)
                      .     +++-.|.+.+  ..|.|+-..
T Consensus       188 g-----~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          188 S-----KDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             C-----TTSSCEEEEECTTSCEEEEES
T ss_pred             c-----CCCcEEEEEecCCCCCEEEEC
Confidence            7     5676676655  778887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.11  E-value=0.11  Score=49.42  Aligned_cols=140  Identities=11%  Similarity=0.060  Sum_probs=72.9

Q ss_pred             CcEEEEEEC-----C------CeEEEEEccCCeEEEEecCCCCCC---EEEEEEccCCCEEEEEeCC--------CcEEE
Q 008041           86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHPGG---VSAISFATHGSCIYSAGAD--------GMVCE  143 (579)
Q Consensus        86 ~~~l~~~~~-----~------g~i~iwd~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~l~s~~~d--------~~v~i  143 (579)
                      +.+++.|+.     .      ..+..||+.+++-.. + ..-..+   ...+.+  ++..++.|+.+        ..+.+
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M-PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C-CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C-CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence            566677763     1      128889998877532 1 111111   112222  56666666632        45889


Q ss_pred             EeCCCCceee--EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCC
Q 008041          144 IDPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNG  211 (579)
Q Consensus       144 wd~~~~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~  211 (579)
                      ||+.+++-..  .+...... .+++ .-++++++.|+        +.+.+||..+.+-..  .++..... .++.. -++
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~  197 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATV-HDG  197 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETT
T ss_pred             ECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEE-ECC
Confidence            9987764221  12111111 1222 24677777775        368999998775322  11111111 12222 356


Q ss_pred             CEEEEEecCCC----eEEEEEcCCCc
Q 008041          212 KYVLSSAVGER----YIALWRTDGVK  233 (579)
Q Consensus       212 ~~l~s~~~~d~----~i~vwd~~~~~  233 (579)
                      +.++.+|..+.    .+.+||+.+.+
T Consensus       198 ~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          198 RIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEEEEeccCCCCccceEEEEECCCCe
Confidence            77777764322    58888988765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.07  E-value=0.41  Score=50.42  Aligned_cols=185  Identities=5%  Similarity=-0.028  Sum_probs=111.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++.+-..++.|+.+++........+ ........++++.+.+..|+.+ ...+.|.+.++........+...-.....
T Consensus        49 ~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~  127 (628)
T 4a0p_A           49 NRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA  127 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCccc
Confidence            334444455677888888765433222 2222456789998766665544 45678999998644322223233456799


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      |+++|....|..+.    +.|...++..... ..+...-.....|+++++++.|+.+-...+.|..+++......   .+
T Consensus       128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v~  203 (628)
T 4a0p_A          128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---VI  203 (628)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EE
T ss_pred             EEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---Ee
Confidence            99999544444443    5788888765433 3333344567899999987777777667789999999765422   11


Q ss_pred             eeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCce
Q 008041          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  285 (579)
                      .  ........ +++.     . + .|+... ..+.|...|..+++
T Consensus       204 ~--~~l~~P~g-lav~-----~-~-~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          204 A--DDLPHPFG-LTQY-----Q-D-YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             E--ECCSCEEE-EEEE-----T-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             e--ccCCCceE-EEEE-----C-C-EEEEecCCCCEEEEEECCCCC
Confidence            1  11222222 3332     2 3 444444 47888888876664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.06  E-value=0.085  Score=50.65  Aligned_cols=111  Identities=13%  Similarity=0.136  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCC
Q 008041          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDH  189 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~  189 (579)
                      .....+..+.+.+++..+ .++.+|.++..+...|+....+..    ....+.++.+.|++.+++++. +.| .+..+.+
T Consensus       202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG  279 (327)
T 2xbg_A          202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG  279 (327)
T ss_dssp             CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred             CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence            345678999999988655 555788888775333443333321    123588999999888888887 766 4455556


Q ss_pred             eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       190 ~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      +.-..+.   .+...+..+.|.++++ +++++ .+|.|.-++-
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~~~~~  320 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILLRYVT  320 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEEEECC
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEEEEcC
Confidence            5444443   2345678899987665 44555 5887776653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.05  E-value=0.25  Score=47.92  Aligned_cols=197  Identities=11%  Similarity=0.144  Sum_probs=95.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|.|||+++++ ..+|.|.+++  ++... .+....      .+...      ......+++.+.-..      +..
T Consensus        34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~-~~~~~~------v~~~g------~~~p~gia~~pdf~~------~g~   91 (352)
T 2ism_A           34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLS-TYAELS------VYHRG------ESGLLGLALHPRFPQ------EPY   91 (352)
T ss_dssp             EEEEECTTSCEEEE-ETTTEEEEEE--TTEEE-EEEECC------CCCST------TCSEEEEEECTTTTT------SCE
T ss_pred             eEEEEcCCCeEEEE-eCCCeEEEEE--CCCcc-Eeecce------EeecC------CCCceeEEECCCCCC------CCE
Confidence            35699999985554 5679999998  45432 111110      00000      011223444432110      234


Q ss_pred             EEEEECC------CeEEEEEccCCe-----EEEE-ec--CCCCCCEEEEEEccCCCEEEEEeC-------------CCcE
Q 008041           89 LVLGTGG------GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMV  141 (579)
Q Consensus        89 l~~~~~~------g~i~iwd~~~~~-----~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~~~-------------d~~v  141 (579)
                      |+++...      +.|..|+...+.     .+.. +.  .+.......++|.|||..+++.+.             .|.|
T Consensus        92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I  171 (352)
T 2ism_A           92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKI  171 (352)
T ss_dssp             EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEE
T ss_pred             EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEE
Confidence            4444432      568888876542     1211 21  111112368999999976555432             2566


Q ss_pred             EEEeCCCCc-------------eeeEe-ecCCCCeeEEEEcc-CCCEEEEEC--CeE------EEEECCCCe--------
Q 008041          142 CEIDPLTGS-------------LLGKF-RASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK--------  190 (579)
Q Consensus       142 ~iwd~~~~~-------------~~~~~-~~~~~~v~~l~~~p-~g~~l~~~~--~~i------~vwd~~~~~--------  190 (579)
                      .-++.. ++             ....+ .++ .....++|+| +|.++++-.  +.+      .+.-+..+.        
T Consensus       172 ~ri~~d-G~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~  249 (352)
T 2ism_A          172 LRLTPE-GEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV  249 (352)
T ss_dssp             EEECTT-SSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred             EEEcCC-CCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence            666654 21             11111 122 2356789999 566555433  231      132222222        


Q ss_pred             ----------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          191 ----------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       191 ----------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                                .+..+..| .....++| .+|..+++. ...+.|...++...
T Consensus       250 g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~-~~~~~v~~v~~~~~  298 (352)
T 2ism_A          250 GRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAG-LRGQALLRLVLEGE  298 (352)
T ss_dssp             SCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEE-TTTTEEEEEEEEEE
T ss_pred             CCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEE-CCCCEEEEEEECCC
Confidence                      22233222 34567777 456555443 35677777776643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.05  E-value=0.16  Score=53.40  Aligned_cols=185  Identities=10%  Similarity=0.036  Sum_probs=106.6

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCce-eeEeecCCCCeeEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL-LGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~-~~~~~~~~~~v~~l~  166 (579)
                      ++.-.....|+..++........+.......+.+++|++.+..++.+. ..+.|..+++..... ...+...-..+..++
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlA   90 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   90 (619)
T ss_dssp             CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEE
T ss_pred             eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEE
Confidence            455556788999988765321122223445688999999777766554 467899999865432 223333335788999


Q ss_pred             EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-CCeEEEEEcCCCccccceeeee
Q 008041          167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       167 ~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +++.+..++.+.   +.|.+.+++.......+...-.....|++.|.+.+|+.+... .+.|...++......   .+. 
T Consensus        91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~---~l~-  166 (619)
T 3s94_A           91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---III-  166 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE-
T ss_pred             EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE---EEE-
Confidence            999666666554   799999987543322222344556789999976666655311 356777776654322   111 


Q ss_pred             eecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  283 (579)
                       ...-.....+.++     +++..|..+. ..+.|..+|++.
T Consensus       167 -~~~~~~P~Glald-----~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          167 -NSEIYWPNGLTLD-----YEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             -CSSCSSEEEEEEE-----TTTTEEEEEETTTCCEEEESSSC
T ss_pred             -eCCCCCCcEEEEE-----ccCCEEEEEeCCCCeEEEecCCC
Confidence             1122233455565     6555555554 356777777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.04  E-value=0.032  Score=56.43  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             EEEEEEC-CCeEEEEEccCCeEEEEecCC--CCCCEEEEEE-------ccCCCEEEEEeCCC-------cEEEEeCCC-C
Q 008041           88 LLVLGTG-GGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-G  149 (579)
Q Consensus        88 ~l~~~~~-~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~-------~~~~~~l~s~~~d~-------~v~iwd~~~-~  149 (579)
                      .|+++.. .+.|++.|+.++.+......+  .......++|       +++|++++.+...+       .|.+++... +
T Consensus       153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G  232 (496)
T 3kya_A          153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG  232 (496)
T ss_dssp             EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred             EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence            3444444 466999999988876433221  2335899999       99999777776544       266776433 2


Q ss_pred             cee-----eEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-------CCee-----------eEEe-e-cCCCC
Q 008041          150 SLL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQKF-S-GHPGA  201 (579)
Q Consensus       150 ~~~-----~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~-------~~~~-----------~~~~-~-~h~~~  201 (579)
                      ...     ..+.. ......++++|++..|..+.   +.|+.+|+.       ++..           ...+ . +....
T Consensus       233 ~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~  311 (496)
T 3kya_A          233 TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW  311 (496)
T ss_dssp             CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred             ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence            221     22222 22456789999555555444   789999987       5543           1122 1 22344


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       202 v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ...|+|+|+|++|+.+-...+.|+.++...
T Consensus       312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            578999999996666555678899877644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.00  E-value=0.29  Score=47.48  Aligned_cols=195  Identities=13%  Similarity=0.096  Sum_probs=98.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|.|||++++ +..+|+|++++ .+++  ..+....  +    +..    +  .....-+++.+.-..      +..
T Consensus        32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~   89 (354)
T 3a9g_A           32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSW   89 (354)
T ss_dssp             EEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCE
T ss_pred             eEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCE
Confidence            4569999998555 45569999997 4555  2222110  0    000    0  011223344332111      234


Q ss_pred             EEEEEC----C----CeEEEEEccCC-------eEEEE-ec--CCCCCCEEEEEEccCCCEEEEEeC-------------
Q 008041           89 LVLGTG----G----GDVLALAVSAG-------QLKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------  137 (579)
Q Consensus        89 l~~~~~----~----g~i~iwd~~~~-------~~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~~~-------------  137 (579)
                      |+++..    +    +.|..|+...+       +.+.. +.  ..|.  ...+.|.|||.++++.+.             
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCC
Confidence            444443    2    45777777654       11111 11  1233  467999999986665432             


Q ss_pred             CCcEEEEeCCCCce--------eeEe-ecCCCCeeEEEEcc-CCCEEEEECC-----eEEEEECCCCe------------
Q 008041          138 DGMVCEIDPLTGSL--------LGKF-RASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSDHK------------  190 (579)
Q Consensus       138 d~~v~iwd~~~~~~--------~~~~-~~~~~~v~~l~~~p-~g~~l~~~~~-----~i~vwd~~~~~------------  190 (579)
                      .|.|..++.. ++.        ...+ .++. ....++|+| +|.++++-.+     .|.+..  .+.            
T Consensus       168 ~G~I~ri~~d-G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~  243 (354)
T 3a9g_A          168 AGKILRVDEE-GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAG  243 (354)
T ss_dssp             SSEEEEECTT-SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCC
T ss_pred             CeEEEEEcCC-CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCC
Confidence            2456666653 321        1111 2232 356899999 6766665442     344432  221            


Q ss_pred             ------eeEEeecCCCCEEEEEEe-------cCCCEEEEEecCCCeEEEEEcCCC
Q 008041          191 ------KMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       191 ------~~~~~~~h~~~v~~l~~s-------~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                            .+..+.........+.|.       .+|.++++. ...+.|...++...
T Consensus       244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN  297 (354)
T ss_dssp             CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred             CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence                  223331122356788884       466665554 35677888887753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.83  E-value=0.55  Score=53.18  Aligned_cols=140  Identities=13%  Similarity=0.162  Sum_probs=87.0

Q ss_pred             CcEEEEEE----------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008041           86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-  154 (579)
Q Consensus        86 ~~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-  154 (579)
                      ..++++|+          ..|.|++|++..++..........++|++++-- +| ++++| ....|++|++...+.++. 
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~  920 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE  920 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence            57889988          357799999986665433333456889998743 45 45444 357899999976654441 


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEE--EECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~v--wd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      .... ..+..+.....++++++|+  ..|.+  |+...++....- ..+...++++.|-.++ .++.+ +.+|.+.+...
T Consensus       921 ~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~a-D~~gNl~vl~~  997 (1158)
T 3ei3_A          921 CNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGA-ENAFNLFVCQK  997 (1158)
T ss_dssp             EEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEE-ETTSEEEEEEE
T ss_pred             eecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEE-cCCCcEEEEec
Confidence            1111 1233334434578899998  55544  555555433222 2245678888887665 44444 47899998876


Q ss_pred             CC
Q 008041          230 DG  231 (579)
Q Consensus       230 ~~  231 (579)
                      ..
T Consensus       998 ~~  999 (1158)
T 3ei3_A          998 DS  999 (1158)
T ss_dssp             CT
T ss_pred             CC
Confidence            55

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.81  E-value=0.17  Score=47.70  Aligned_cols=142  Identities=13%  Similarity=0.070  Sum_probs=74.7

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeeE
Q 008041           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~  154 (579)
                      +.+++.|+.+     ..+.+||+.+++-...- .......-.++.+  +++.++.|+.+     ..+.+||+.+.+-...
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            5556666543     35899999887643211 1111111222222  66667777654     4688999877643222


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC--
Q 008041          155 --FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE--  221 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d--  221 (579)
                        +........++.  -++++++.|+       +.+.+||..+.+-...  +....... ++. .-+++.++.+|..+  
T Consensus       191 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~  266 (301)
T 2vpj_A          191 TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GAT-VLRGRLYAIAGYDGNS  266 (301)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSS
T ss_pred             CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEE-EECCEEEEEcCcCCCc
Confidence              211111222222  2677777776       3689999988754322  11111111 222 23566666665322  


Q ss_pred             --CeEEEEEcCCCc
Q 008041          222 --RYIALWRTDGVK  233 (579)
Q Consensus       222 --~~i~vwd~~~~~  233 (579)
                        ..+.+||+.+.+
T Consensus       267 ~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          267 LLSSIECYDPIIDS  280 (301)
T ss_dssp             BEEEEEEEETTTTE
T ss_pred             ccccEEEEcCCCCe
Confidence              357888887765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.78  E-value=0.28  Score=46.65  Aligned_cols=130  Identities=12%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             EEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCceeeE--eecCCCCeeEEEE
Q 008041           98 VLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLGK--FRASTKGISCMAV  167 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~--~~~~~~~v~~l~~  167 (579)
                      +..||+.+++-...-. .........+.+  ++..++.|+.+       ..+.+||+.+.+-...  +...... .+++.
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE
Confidence            7889988876532110 111111122222  56677777654       3578889876643221  1111111 12222


Q ss_pred             ccCCCEEEEEC--------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCc
Q 008041          168 SSDGKMLATAA--------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVK  233 (579)
Q Consensus       168 ~p~g~~l~~~~--------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d----~~i~vwd~~~~~  233 (579)
                       .++++++.|+        +.+.+||..+.+-...  +...... .++.. -+++.++.+|..+    ..+.+||+.+.+
T Consensus       157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             -ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence             4677777775        2589999988754322  1111111 12222 3566666666322    247788888765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.011  Score=56.57  Aligned_cols=196  Identities=10%  Similarity=0.034  Sum_probs=105.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecC---
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRAS---  158 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~---  158 (579)
                      +.++++++.||.|+-+|..+|+..+++......++....-  .+.+..++.+  +.||.|+.+|..+|.....+...   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            5689999999999999999999999885432233332211  0112244444  58999999999888554443321   


Q ss_pred             -CCCeeE---EEE-c----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC--CC-----EEEEEEe-----cCCCEEE
Q 008041          159 -TKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL  215 (579)
Q Consensus       159 -~~~v~~---l~~-~----p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~--~~-----v~~l~~s-----~~~~~l~  215 (579)
                       ..++..   ..+ .    ..+..+++|+  |.++..|.++|+.+.++....  +.     ..|....     ..+..++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence             112211   001 0    0344555565  899999999999998885321  11     1111110     1124555


Q ss_pred             EEecCCCeEEEEEcCCCccccceeeee-eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          216 SSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      .+. .+..+.+.+ ++++ . ....+. ..........  ...-....|+.+ +.++.||.|.-+|..+|+.+.
T Consensus       170 ig~-~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~--~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGK-TIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPL--ALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEE-EEEECEECC-TTSC-C-CCCEEEEEECCTTTHHH--HTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             Eec-ceEEEEEEC-CCCC-e-EEEeccccccccccccc--ccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            554 466666666 3332 1 111000 0000000000  000000134566 457899999999999888764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.012  Score=56.40  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=73.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcEEEEE-ECC
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGG   95 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~-~~~   95 (579)
                      ..++.++.||.|.-.|..+|+....++... .++..   ..    +. ..           .     .++..++.. +.|
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~---~~----~~-~~-----------~-----~~~~~~vv~p~~d   66 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE---IQ----EP-SR-----------L-----ETYETLIIEPFGD   66 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE---CC----CS-CT-----------T-----TSSEEEEECCSTT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE---ec----CC-cc-----------c-----cCCcEEEEEECCC
Confidence            478889999999999999999999886430 01100   00    00 00           0     012333343 689


Q ss_pred             CeEEEEEccCCeEEEEecCC---CCCCEEE---EEE-----ccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           96 GDVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~---h~~~V~~---l~~-----~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                      |.|+.++..+|...+.+...   ..+++..   ...     ...+..+++++.+|++...|+.+|+.+..+..
T Consensus        67 G~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           67 GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             CEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            99999999988665443211   2233332   000     01355789999999999999999999998864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.58  E-value=1.1  Score=50.63  Aligned_cols=176  Identities=11%  Similarity=0.121  Sum_probs=101.9

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEE---ccC-CCEEEEEe----------CCCcEEEEeCCCCceeeEe-ecCCC
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISF---ATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKF-RASTK  160 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~---~~~-~~~l~s~~----------~d~~v~iwd~~~~~~~~~~-~~~~~  160 (579)
                      +.|++.|..+.+.+..+.-.....+.+++.   ..+ ..+++.|.          ..|.|++|++..++..... ...++
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            458999999888765554334445555553   322 46777775          3578999998755432221 12356


Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--CCccccce
Q 008041          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~--~~~~~~~~  238 (579)
                      +|++++-- +|+++++.++.|++|++...+.++.-..+...|..+.....+.+++.+-. -+.+.++..+  ..+..   
T Consensus       887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~L~---  961 (1158)
T 3ei3_A          887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGNFE---  961 (1158)
T ss_dssp             CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTEEE---
T ss_pred             cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCeEE---
Confidence            88888755 56666666799999999876544411111222333333334667777653 4456655443  33211   


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      . ..-+.....+.++.+-      +...++.+..+|.+.++..+.
T Consensus       962 ~-~a~D~~~~~vta~~~l------d~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          962 E-IARDFNPNWMSAVEIL------DDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             E-EEECCSCBCEEEEEEE------ETTEEEEEETTSEEEEEEECT
T ss_pred             E-EEeecccccEEEEEEE------ccCcEEEEcCCCcEEEEecCC
Confidence            2 2222333334444442      235778889999999987543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.56  E-value=0.16  Score=57.32  Aligned_cols=195  Identities=11%  Similarity=0.097  Sum_probs=115.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecC----CC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAS----TK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~----~~  160 (579)
                      ...|++- ....+.|||+.+...+....  ...+|.--.|-.+... +-. .+..|+-|++.. ..+++.|.-|    ..
T Consensus        77 ~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~  151 (1630)
T 1xi4_A           77 SKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTV-ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (1630)
T ss_pred             cceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCCCee-EEE-cCCeEEEeccCCCCccHHHHhcchhcccC
Confidence            3444444 36779999999877654442  3456776677654433 333 256799999964 2454455544    34


Q ss_pred             CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEe--cCCCEEEEEec---CCCeEEE
Q 008041          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~---~d~~i~v  226 (579)
                      .|..-..+++.++++..+         |.+.+|.++.+. -..+.||.+....+...  +....+++-+.   ..+.++|
T Consensus       152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi  230 (1630)
T 1xi4_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (1630)
T ss_pred             eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence            788888899999888654         789999886543 33456676554444332  11122333221   1267888


Q ss_pred             EEcCCC-c--cc-cce---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          227 WRTDGV-K--KQ-SAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       227 wd~~~~-~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      -++... .  .. ...   ..+.-.......-.+..+     +.-..+...+.-|.+++||+.|+..+...+
T Consensus       231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence            888553 1  00 000   111111222333334444     566778888999999999999998876544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.54  E-value=0.3  Score=46.11  Aligned_cols=142  Identities=10%  Similarity=0.031  Sum_probs=74.4

Q ss_pred             CcEEEEEECC------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCC
Q 008041           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~---------d~~v~iwd~~~~  149 (579)
                      +.+++.|+.+      ..+.+||+.+++-...-. ........++.+  +++.++.|+.         -..+.+||+.+.
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            5566666654      349999999886532211 111111122222  5666666653         345889998876


Q ss_pred             ceeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEe
Q 008041          150 SLLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       150 ~~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      +-...  +...... .++... ++++++.|+       ..+.+||..+.+-..  .++........+.+  +++.++.+|
T Consensus       180 ~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  255 (306)
T 3ii7_A          180 TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG  255 (306)
T ss_dssp             EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred             eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence            43222  1111111 122222 677777776       368999998875322  12111111222222  566666666


Q ss_pred             cC----CCeEEEEEcCCCc
Q 008041          219 VG----ERYIALWRTDGVK  233 (579)
Q Consensus       219 ~~----d~~i~vwd~~~~~  233 (579)
                      ..    -..+.+||+.+.+
T Consensus       256 ~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTE
T ss_pred             cCCCeeeeeEEEEcCCCCe
Confidence            31    1468888888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.49  E-value=0.21  Score=47.09  Aligned_cols=142  Identities=13%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCcee
Q 008041           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~  152 (579)
                      +.+++.|+.++     .+.+||+.+++-...-. ........++.+  +++.++.|+.+       ..+.+||+.+.+-.
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            56667776553     48899998876532211 111111122222  56666666542       45889998776432


Q ss_pred             eE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC
Q 008041          153 GK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       153 ~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                      ..  +....... +++. -++++++.|+       +.+.+||..+.+-...  +...... .++. .-+++.++.+|...
T Consensus       187 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          187 YIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVC-AVNGLLYVVGGDDG  262 (302)
T ss_dssp             EECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBCS
T ss_pred             ECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEE-EECCEEEEECCcCC
Confidence            21  22111122 2222 2677777776       3699999988754322  1111111 1222 23566666666321


Q ss_pred             ----CeEEEEEcCCCc
Q 008041          222 ----RYIALWRTDGVK  233 (579)
Q Consensus       222 ----~~i~vwd~~~~~  233 (579)
                          ..+.+||+.+.+
T Consensus       263 ~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          263 SCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSBCCCEEEEETTTTE
T ss_pred             CcccccEEEEcCCCCe
Confidence                248888888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.44  E-value=0.53  Score=45.51  Aligned_cols=189  Identities=11%  Similarity=0.005  Sum_probs=89.5

Q ss_pred             CcEEEEEEC----------CCeEEEEEccCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCC---------------
Q 008041           86 SSLLVLGTG----------GGDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGAD---------------  138 (579)
Q Consensus        86 ~~~l~~~~~----------~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d---------------  138 (579)
                      +.+++.|+.          ..++.+||+.+++-.......  ......++.  .+++.++.|+.+               
T Consensus        66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~  143 (357)
T 2uvk_A           66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAG  143 (357)
T ss_dssp             TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcC
Confidence            455666554          135999999988753211111  111222233  467777777754               


Q ss_pred             ------------------------CcEEEEeCCCCceee--EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEE
Q 008041          139 ------------------------GMVCEIDPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTF  184 (579)
Q Consensus       139 ------------------------~~v~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vw  184 (579)
                                              ..+.+||+.+.+-..  .+......-.+++.. ++++++.|+        ..+.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~  222 (357)
T 2uvk_A          144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFEL  222 (357)
T ss_dssp             TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEE
T ss_pred             CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEE
Confidence                                    578999987764322  222111111233333 667777765        257778


Q ss_pred             EC--CCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCC---------------------CeEEEEEcCCCcccccee
Q 008041          185 NC--SDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------------------RYIALWRTDGVKKQSASC  239 (579)
Q Consensus       185 d~--~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d---------------------~~i~vwd~~~~~~~~~~~  239 (579)
                      |+  .+.+-.  ..+..........+...+++.++.+|..+                     ..+.+||+.+.+-.   .
T Consensus       223 d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~  299 (357)
T 2uvk_A          223 DFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---K  299 (357)
T ss_dssp             ECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---E
T ss_pred             EecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---e
Confidence            77  443321  11111111111112334566666665211                     24778998876532   2


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC------eEEEEEcCCceee
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG------VCYIWYGQNIEEL  287 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~  287 (579)
                      +..+..+.....++.       .+++.++.|+.++      .+.++++++.+.+
T Consensus       300 ~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          300 SGELSQGRAYGVSLP-------WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEECSSCCBSSEEEE-------ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             CCCCCCCcccceeEE-------eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            222322222212222       3567777777542      3555677666544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.42  E-value=0.45  Score=45.13  Aligned_cols=181  Identities=8%  Similarity=0.076  Sum_probs=92.0

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----C-------CcEEEEeCCCCceeeE--
Q 008041           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-------GMVCEIDPLTGSLLGK--  154 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d-------~~v~iwd~~~~~~~~~--  154 (579)
                      +++.|+  ..+.+||+.+++-...-...............++..++.|+.    +       ..+..||..+++-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344444  689999999988543222211122233333457777777773    1       1277889877643221  


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCC-
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d-  221 (579)
                      +....... +++.. ++++++.|+          +.+.+||..+.+-..  .++..... .++. ..+++.++.+|..+ 
T Consensus        85 ~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTT
T ss_pred             CCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCC
Confidence            11111111 22222 566777665          258999998875322  11111111 1222 24566666665312 


Q ss_pred             ----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041          222 ----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       222 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  284 (579)
                          ..+.+||+.+.+-.   .+..+..+.....++.       -+++.++.|+.++     .+.+||..+.
T Consensus       161 ~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWK---ELAPMQTARSLFGATV-------HDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             SCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CcccceEEEEeCCCCeEE---ECCCCCCchhceEEEE-------ECCEEEEEeccCCCCccceEEEEECCCC
Confidence                35888998876532   1112222221122222       2557777776644     5777887665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.27  E-value=0.34  Score=42.77  Aligned_cols=137  Identities=10%  Similarity=0.013  Sum_probs=79.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee------e
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------G  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------~  153 (579)
                      ..+|+....| +++.=.+..+..      ..++-++-=..+..++|+|+|.+.+.  .+|.++-.+..+....      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            4456666666 666555554431      11221111236789999998875444  7888888886552211      1


Q ss_pred             Eeec-CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeee------EEee-cCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041          154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM------QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       154 ~~~~-~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~------~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~  225 (579)
                      .+-. .-....++.|.|+|.+.++..|.|+-++-.+...-      .++. +-=..+..|.|.|+|...++.   |+.++
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly  157 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY  157 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred             EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence            1110 11135889999999999996699988875332110      1111 111457899999999766553   66654


Q ss_pred             EEE
Q 008041          226 LWR  228 (579)
Q Consensus       226 vwd  228 (579)
                      -+.
T Consensus       158 r~~  160 (236)
T 1tl2_A          158 KAL  160 (236)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.17  E-value=0.22  Score=47.14  Aligned_cols=183  Identities=10%  Similarity=0.007  Sum_probs=91.9

Q ss_pred             CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC----C-----CcEEEEeCCCCce
Q 008041           86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~----d-----~~v~iwd~~~~~~  151 (579)
                      +.+++.|+.+    ..+.+||+.+++....-. ......-..+.+  ++..++.|+.    +     ..+.+||+.+.+-
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            5566666643    359999999887542110 101111122222  5666666665    2     4688999876642


Q ss_pred             eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008041          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      ...  +........++.+  ++++++.|+       ..+.+||..+.+-..  .+.........+.+  +++.++.+|..
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            221  2211112222222  677777776       368999998775332  11111111122222  56666666532


Q ss_pred             ----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041          221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  284 (579)
                          -..+.+||+.+.+-.   .+..+........++.       -+++.++.|+.+     ..+.+||..+.
T Consensus       179 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCV-------LHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCcCceEEEEeCCCCeEe---eCCCCCCccccceEEE-------ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence                145888998776532   1111112211112222       245666666554     45778887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.16  E-value=1.1  Score=43.92  Aligned_cols=234  Identities=13%  Similarity=0.133  Sum_probs=137.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +.-.+|..+.+|.=. ..++.|||+++...+..+.-                   ..++..-.|.+.          +.|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-------------------~e~VvfWkWis~----------~~l  119 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL----------NTV  119 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEEEET----------TEE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-------------------CCCceEEEecCC----------CeE
Confidence            334688888888765 56899999999988776541                   224455667764          334


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecC
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                      +..+ +..|+-|++.......+.+.-|    ...|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+.+|
T Consensus       120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh  197 (494)
T 1bpo_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (494)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred             EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence            4443 4679999997643333333323    35688888899999866443       2467889997544 44567777


Q ss_pred             CCCeeEEEEccC---CCEEEEEC-----CeEEEEECCCC--------ee-eEEe-e--cCCCCEEEEEEecCCCEEEEEe
Q 008041          159 TKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH--------KK-MQKF-S--GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       159 ~~~v~~l~~~p~---g~~l~~~~-----~~i~vwd~~~~--------~~-~~~~-~--~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      -.....+.+.-+   .++++.+.     +.+++.++...        +. +..+ +  ....-..++..++.-..++.-.
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT  277 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence            665544443311   12334332     58888888542        11 1111 1  1123345677887766666665


Q ss_pred             cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                       .-|.|++||+.++...     +.-.-....+=..+..     ....=+++....|.|.--.++..+.
T Consensus       278 -K~G~i~lyDleTgt~i-----~~nrIs~~~iF~t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          278 -KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             -TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             -cCceEEEEecccceee-----eeecccCCceEEeccc-----CCCCcEEEEccCceEEEEEEccccc
Confidence             6899999999999743     3322222222222222     3334455566777776655554443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.97  E-value=0.64  Score=44.06  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCce
Q 008041           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~  151 (579)
                      +.+++.|+.+       ..+.+||+.+++-...-. ......-.++.  .+++.++.|+.      -..+.+||+.+.+-
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            5566777653       248899998876542210 10001111222  36666666653      24589999887642


Q ss_pred             eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCee
Q 008041          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK  191 (579)
Q Consensus       152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~  191 (579)
                      ...  +...... .+++. -++++++.|+       ..+.+||..+.+-
T Consensus       188 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          188 KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            221  2111111 22222 2677777775       3688999887653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.96  E-value=0.051  Score=53.10  Aligned_cols=132  Identities=13%  Similarity=0.132  Sum_probs=78.0

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .|+.+  ..||+|++||..+. ..|.|-.+-.+.....-.+....+....|...-........+..+.|+|....     
T Consensus        67 ~i~ql--vlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~-----  138 (452)
T 3pbp_A           67 DTFHV--ISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR-----  138 (452)
T ss_dssp             TTCEE--EECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-----
T ss_pred             ceeEE--EECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-----
Confidence            45444  89999999998874 57888887633211000000011122222221001112456888999998766     


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeE-EEEec--------CCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEe
Q 008041           85 GSSLLVLGTGGGDVLALAVSAGQL-KWRLS--------DCHPGGVSAISFATHGSCIYSAG--ADGMVCEID  145 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~--------~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd  145 (579)
                       +..|++-+.|+.|++||+..... ...+.        ......|.+++|.+++=.|+..+  ..|.|+-.-
T Consensus       139 -ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          139 -DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             -GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             -CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence             78999999999999999986321 11111        12225688888888665566644  666665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.89  E-value=1.4  Score=42.64  Aligned_cols=29  Identities=14%  Similarity=0.232  Sum_probs=21.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ   38 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~   38 (579)
                      ..++|.|||++|..+...|+|++++. .+.
T Consensus        21 ~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~   49 (353)
T 2g8s_A           21 WALAFLPDNHGMLITLRGGELRHWQA-GKG   49 (353)
T ss_dssp             EEEEECSTTCCEEEEETTTEEEEEET-TTE
T ss_pred             EEEEEcCCCCEEEEEeCCceEEEEeC-CCc
Confidence            45699999994445566899999985 344

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.28  E-value=0.97  Score=43.67  Aligned_cols=98  Identities=13%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEee---cCCCCeeEEEEccC---CCEE-EEEC-------CeE
Q 008041          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFR---ASTKGISCMAVSSD---GKML-ATAA-------GQL  181 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~---~~~~~v~~l~~~p~---g~~l-~~~~-------~~i  181 (579)
                      ...++++|.|+|+. +.+..+|.|++++  +++.  +..+.   ........|+++|+   +..| ++-.       +.|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45789999999984 4556779999998  4442  11111   12347899999998   4444 4433       467


Q ss_pred             EEEECCCCe-----ee-EEee---cCCCCEEEEEEecCCCEEEEEe
Q 008041          182 KTFNCSDHK-----KM-QKFS---GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       182 ~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ..|+...++     .+ ..+.   +.......++|.|||..+++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            788876431     12 2233   1112346899999997666543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.22  E-value=2.4  Score=40.93  Aligned_cols=127  Identities=13%  Similarity=0.187  Sum_probs=73.4

Q ss_pred             EEEEEECCCeEEEEEccCCe-EEEEe--cCCCCCCEEEEEEccC---CCEEEEEeC----C----CcEEEEeCCCC--c-
Q 008041           88 LLVLGTGGGDVLALAVSAGQ-LKWRL--SDCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S-  150 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~-~~~~~--~~~h~~~V~~l~~~~~---~~~l~s~~~----d----~~v~iwd~~~~--~-  150 (579)
                      .++++...|.|++++ ..++ .+..+  .........+++|+|+   +..|+.+..    +    ..|..|+...+  . 
T Consensus        41 ~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~  119 (354)
T 3a9g_A           41 RYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKL  119 (354)
T ss_dssp             EEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCE
T ss_pred             eEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCc
Confidence            377778889999997 3444 22221  1122356899999997   556655543    3    57888886543  1 


Q ss_pred             ----ee-eEeec-CCCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCC---------eeeEEeecCCC
Q 008041          151 ----LL-GKFRA-STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSGHPG  200 (579)
Q Consensus       151 ----~~-~~~~~-~~~~v~~l~~~p~g~~l~~~~---------------~~i~vwd~~~~---------~~~~~~~~h~~  200 (579)
                          .+ ..+.. .......++|.|||.++++.+               |.|.-++....         ..+. -.+|..
T Consensus       120 ~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn  198 (354)
T 3a9g_A          120 KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN  198 (354)
T ss_dssp             EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC
T ss_pred             CccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC
Confidence                11 11221 112346799999998777743               34555554321         0111 134443


Q ss_pred             CEEEEEEec-CCCEEEEE
Q 008041          201 AVRFMTFSD-NGKYVLSS  217 (579)
Q Consensus       201 ~v~~l~~s~-~~~~l~s~  217 (579)
                       ...++|+| +++.+++-
T Consensus       199 -p~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          199 -PQGIDWHRASGVMVATE  215 (354)
T ss_dssp             -CCEEEECTTTCCEEEEE
T ss_pred             -cceEEEeCCCCCEEEEe
Confidence             36799999 67655543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.19  E-value=4.3  Score=43.77  Aligned_cols=178  Identities=13%  Similarity=0.150  Sum_probs=105.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----cCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~  160 (579)
                      ...|.+|+.+| +..||..+++... ........|.++.. .+| .+..++.+ -+..+|..+++.. .+.     ....
T Consensus        73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~  146 (758)
T 3ott_A           73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN  146 (758)
T ss_dssp             TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred             CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence            45678888765 7899998876532 11112345777754 345 56666666 5888998765533 331     1234


Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee--cC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~--~h----~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .|.++...++|.+.+...+-+..|+..+++.. .+.  ..    ...|.++...+++..|..+. . +-+..++..+.+.
T Consensus       147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQI  223 (758)
T ss_dssp             CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEE
T ss_pred             eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeE
Confidence            68899888888877765566888888776542 221  11    12478888877776555554 2 4588888776542


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      .   ....+  ....+..+...     ++|... .|+. +-+.+++..+.
T Consensus       224 ~---~~~~l--~~~~i~~i~~d-----~~g~lW-igT~-~Gl~~~~~~~~  261 (758)
T 3ott_A          224 K---QTEAF--HNNSIKSLALD-----GNGDLL-AGTD-NGLYVYHNDTT  261 (758)
T ss_dssp             E---EEEEE--EEEEEEEEEEC-----TTCCEE-EEET-TEEEEECCTTS
T ss_pred             E---eccCC--CCCeEEEEEEc-----CCCCEE-EEeC-CceeEEecCCC
Confidence            2   11111  12334445444     555544 4454 45778887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.91  E-value=2.8  Score=40.15  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=23.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~   39 (579)
                      ..++|.|||+++++--..|+|++++..++..
T Consensus        35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~   65 (347)
T 3das_A           35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRK   65 (347)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             eEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence            4569999999777655589999998766654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.84  E-value=1.5  Score=46.86  Aligned_cols=147  Identities=8%  Similarity=0.065  Sum_probs=80.1

Q ss_pred             CcEEEEEECC----CeEEEEEccCCeEEEEe-c------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCC
Q 008041           86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~-~------~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~  148 (579)
                      +.+++.|+.+    .++.+||+.+++..... .      ......-..+.+..+++.++.|+.+      ..+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            5566666643    45999999988654222 1      1111112233332267677777643      3588899877


Q ss_pred             Cceee--EeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-----ecCCCCEEEEEEecC-CCEEEE
Q 008041          149 GSLLG--KFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTFSDN-GKYVLS  216 (579)
Q Consensus       149 ~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~s~~-~~~l~s  216 (579)
                      .+-..  .+.... .-.+++...++++++.|+    +.+.+||..+.+-...-     +........+.+..+ ++.++.
T Consensus       478 ~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          478 REWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            53221  122111 112333334788888887    27999999887543211     111122233555555 556666


Q ss_pred             EecC-C-----CeEEEEEcCCCc
Q 008041          217 SAVG-E-----RYIALWRTDGVK  233 (579)
Q Consensus       217 ~~~~-d-----~~i~vwd~~~~~  233 (579)
                      ||.. +     +.+.+||+.+..
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCcCCCCCeeeCcEEEEEccCCc
Confidence            6531 1     358899998876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.62  E-value=1.5  Score=49.82  Aligned_cols=191  Identities=14%  Similarity=0.169  Sum_probs=109.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      -.+|..+.+|.=. ..++.|||+.+...+..+.-                   ..++..-.|.+.          +.|+.
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis~----------~~l~l  121 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL----------NTVAL  121 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecCC----------CeeEE
Confidence            3577777777654 56788888887766544321                   223445566653          33444


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCCC
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      .+ +..|+.|++.......+.+.-|    ...|..-..+++.++++..|       -.|.+.+|..+.+ .-+.+.||-+
T Consensus       122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~  199 (1630)
T 1xi4_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (1630)
T ss_pred             Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence            43 4579999997544333333333    45677888889999866443       3478888887543 3344566655


Q ss_pred             CeeEEEEc--c-CCCEEEEEC-----CeEEEEECCCC---ee------eEEe-ec--CCCCEEEEEEecCCCEEEEEecC
Q 008041          161 GISCMAVS--S-DGKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       161 ~v~~l~~~--p-~g~~l~~~~-----~~i~vwd~~~~---~~------~~~~-~~--h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      ....+...  + ..++++.+.     +.++|-++...   ..      +..+ +.  ...-..++..++.-..+...+ .
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it-k  278 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K  278 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe-c
Confidence            44333332  1 122333332     57888887542   11      1111 11  112233556666555555555 6


Q ss_pred             CCeEEEEEcCCCccc
Q 008041          221 ERYIALWRTDGVKKQ  235 (579)
Q Consensus       221 d~~i~vwd~~~~~~~  235 (579)
                      -|.|.+||+.++...
T Consensus       279 ~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          279 YGYIHLYDLETGTCI  293 (1630)
T ss_pred             CceEEEEecccchhh
Confidence            899999999998744

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.58  E-value=0.77  Score=40.53  Aligned_cols=137  Identities=9%  Similarity=-0.001  Sum_probs=78.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCce------eeEeecC--CCCeeEEEEccCCCEEEEECCeEEEEECCCCee------eEE
Q 008041          129 GSCIYSAGADGMVCEIDPLTGSL------LGKFRAS--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQK  194 (579)
Q Consensus       129 ~~~l~s~~~d~~v~iwd~~~~~~------~~~~~~~--~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~------~~~  194 (579)
                      ...|+....| +++.=...++..      ..++ +.  -..+..++|+|+|.+.++.+|.++-.+..+.+.      -..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccE
Confidence            3456666666 666655544431      1111 22  237789999999998888558887777655221      111


Q ss_pred             eec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc--eeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          195 FSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA--SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       195 ~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      +-. --..-..+.|.|+|.+.++ +  ||.|+-++..+......  .........-..+..+++.     |+|...++. 
T Consensus        82 IG~~Gw~~F~a~~fD~~G~LYav-~--dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-----p~G~Lyav~-  152 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFDPNGYLYAV-S--KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-----PNGYLYAVH-  152 (236)
T ss_dssp             EECSCGGGCSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-----TTSCEEEEE-
T ss_pred             ecccccccceEEEECCCCCEEEe-C--CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-----CCceEEEEe-
Confidence            110 0111478899999987665 3  69898887644332210  0011111122345778887     998877666 


Q ss_pred             cCCeEE
Q 008041          272 ETGVCY  277 (579)
Q Consensus       272 ~dg~i~  277 (579)
                       ||.++
T Consensus       153 -dg~ly  157 (236)
T 1tl2_A          153 -GQQFY  157 (236)
T ss_dssp             -TTEEE
T ss_pred             -CCcEE
Confidence             77754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.20  E-value=3.7  Score=38.50  Aligned_cols=133  Identities=10%  Similarity=0.134  Sum_probs=78.3

Q ss_pred             CcEEEEEE----CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCCC
Q 008041           86 SSLLVLGT----GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~----~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      +..|+...    ....|+..++...... ++.. +..    ..|+++++.|+-.+. ...|+..++..+.....+.   +
T Consensus       115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~  185 (302)
T 3s25_A          115 GNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C  185 (302)
T ss_dssp             TTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred             CCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence            55566665    2344666666644332 3322 222    356778888876665 6788888987655443333   2


Q ss_pred             CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCc
Q 008041          161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~~~  233 (579)
                      .. ...++|++..|+-..    ..|..-++..+. ...+..  ..+  ..|+|+++.|+.+.. ....|..-++....
T Consensus       186 ~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          186 NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            22 234669898888765    267777776544 333432  233  347888988877532 23567777776654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.13  E-value=0.9  Score=43.82  Aligned_cols=90  Identities=16%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CcEEEEEECC-CeEEEEEccCCeEEEEecCCCC----CCEEEEEEccCCCEEEEEeC-C---------CcEEEEeCCCCc
Q 008041           86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA-D---------GMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~-d---------~~v~iwd~~~~~  150 (579)
                      +.+++.|+.+ .++.+||+.+....+.....-.    ..-.++.+  +++.++.|+. +         ..+.+||+.+.+
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            4555555543 4599999975222222211111    11222222  5666666665 2         468899987764


Q ss_pred             eee--EeecCCCCeeEEEEccCCCEEEEEC
Q 008041          151 LLG--KFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       151 ~~~--~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      -..  .+. ........+...++++++.|+
T Consensus        98 W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG  126 (357)
T 2uvk_A           98 WVKLMSHA-PMGMAGHVTFVHNGKAYVTGG  126 (357)
T ss_dssp             EEECSCCC-SSCCSSEEEEEETTEEEEEEC
T ss_pred             EEECCCCC-CcccccceEEEECCEEEEEeC
Confidence            222  122 011111212225778888876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.05  E-value=5.8  Score=40.23  Aligned_cols=250  Identities=10%  Similarity=0.098  Sum_probs=134.2

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc----c----cccceEEeeecc-cc---cccccCCc
Q 008041           20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL----S----VDYTCMKWLSVD-RK---KKRKLGSS   87 (579)
Q Consensus        20 lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~w~~~~-~~---~~~~~~~~   87 (579)
                      |.+|+..|.|+|+-+-+++.+..+.-         |++....|--    +    .....+.|.... ++   .....+++
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpV---------F~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr  143 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK  143 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECS---------SSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeec---------ccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE
Confidence            56788899999999999999887642         2211111100    0    000112222111 00   01112367


Q ss_pred             EEEEEECC-CeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeC-------CCcEE---------E---Ee
Q 008041           88 LLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMVC---------E---ID  145 (579)
Q Consensus        88 ~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~-------d~~v~---------i---wd  145 (579)
                      ++++-... ..|-..++..-++-..+.-.....+.+++|-  |+..|++.++.       ||...         +   .|
T Consensus       144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD  223 (638)
T 3sbq_A          144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID  223 (638)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred             EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence            77777744 4588888888776554544567889999996  78888887753       33211         1   12


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C----------------eEEEEEC----------------------
Q 008041          146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNC----------------------  186 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~----------------~i~vwd~----------------------  186 (579)
                      ..+.+....+.- .+....+...++|++.++.+ +                .+.++++                      
T Consensus       224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V  302 (638)
T 3sbq_A          224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV  302 (638)
T ss_dssp             TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence            111111111111 12223345566676666543 1                2455543                      


Q ss_pred             ---CC----CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc-------ccceeeeeeecCceeEEe
Q 008041          187 ---SD----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       187 ---~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~  252 (579)
                         +.    +..+..+-.-......+.++|||+++++++.-+.++.++|++.-..       ....++........-..-
T Consensus       303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH  382 (638)
T 3sbq_A          303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH  382 (638)
T ss_dssp             EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred             EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence               22    1111111111233467899999999999988889999999885321       111122111112222234


Q ss_pred             EEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      ..|+     ++|....+.--|..|.-|+++..
T Consensus       383 t~Fd-----~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          383 TTFD-----GRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEEC-----SSSEEEEEETTTTEEEEEEHHHH
T ss_pred             EEEC-----CCCceEeeeeecceEEEEeccHH
Confidence            5565     78844444456999999998654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.80  E-value=6  Score=39.54  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=21.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~   39 (579)
                      ..++|.|||+++++-...+.|++++..++..
T Consensus        30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~   60 (454)
T 1cru_A           30 HALLWGPDNQIWLTERATGKILRVNPESGSV   60 (454)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence            4569999999777654345788887655654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.67  E-value=6.4  Score=41.90  Aligned_cols=147  Identities=8%  Similarity=0.020  Sum_probs=79.1

Q ss_pred             CcEEEEEECC------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeE--
Q 008041           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGK--  154 (579)
Q Consensus        86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~--  154 (579)
                      +.++++|+.+      .++.+||+.+++-...-. ...... .+++...++..++.|+.++  .+.+||..+..-...  
T Consensus       452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            5566776644      348999999876432110 101111 1223324778888887654  699999887642221  


Q ss_pred             ---eecCCCCeeEEEEccC-CCEEEEEC---------CeEEEEECCCCee-----eEEeec---CCCCEEEEEEecCCCE
Q 008041          155 ---FRASTKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKY  213 (579)
Q Consensus       155 ---~~~~~~~v~~l~~~p~-g~~l~~~~---------~~i~vwd~~~~~~-----~~~~~~---h~~~v~~l~~s~~~~~  213 (579)
                         .........++.+..+ +++++.|+         +.+.+||+.+.+.     ...+..   ....-.++....+++.
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i  610 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL  610 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence               1111122234555655 67777775         2588999988761     122211   1111123333444666


Q ss_pred             EEEEecC-------CCeEEEEEcCCCc
Q 008041          214 VLSSAVG-------ERYIALWRTDGVK  233 (579)
Q Consensus       214 l~s~~~~-------d~~i~vwd~~~~~  233 (579)
                      ++.||..       ...+.+||+.+.+
T Consensus       611 yv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          611 LIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEECCccCCCCCCCCCeEEEEECCCCe
Confidence            6666631       2458888888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.58  E-value=5.4  Score=38.30  Aligned_cols=129  Identities=12%  Similarity=0.126  Sum_probs=71.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE---EE---ecCCCCCCEEEEEEccC---CCEEEEEeC--------CCcEEEEeCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLK---WR---LSDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~---~~---~~~~h~~~V~~l~~~~~---~~~l~s~~~--------d~~v~iwd~~~  148 (579)
                      +..++++...|.|++++.. +...   ..   ...........++|+|+   +..|+.+..        ...|..|++..
T Consensus        29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~  107 (353)
T 2g8s_A           29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD  107 (353)
T ss_dssp             TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred             CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence            4426677788999999853 3321   11   11112346789999996   555555432        23576676643


Q ss_pred             C--c--eeeE-eec------CCCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCCe------------
Q 008041          149 G--S--LLGK-FRA------STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------  190 (579)
Q Consensus       149 ~--~--~~~~-~~~------~~~~v~~l~~~p~g~~l~~~~---------------~~i~vwd~~~~~------------  190 (579)
                      +  .  .... +..      .......++|.|||.++++.+               |.|.-++....-            
T Consensus       108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~  187 (353)
T 2g8s_A          108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV  187 (353)
T ss_dssp             TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred             CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence            3  1  1111 211      112246799999998777653               356666665320            


Q ss_pred             eeEEe-ecCCCCEEEEEEec-CCCEEEE
Q 008041          191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS  216 (579)
Q Consensus       191 ~~~~~-~~h~~~v~~l~~s~-~~~~l~s  216 (579)
                      ....+ .+|. ....++|+| +|+.+++
T Consensus       188 ~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          188 RAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CccEEEEcCc-CccceEEECCCCCEEEE
Confidence            11112 2443 357899999 5655444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.38  E-value=5.2  Score=37.47  Aligned_cols=157  Identities=10%  Similarity=0.069  Sum_probs=88.9

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g  171 (579)
                      +.|+..++..++.. .+..   ..  +..|+++++.|+-..    .+..|+..++. |.....+..+..    .+++|+|
T Consensus        88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEET
T ss_pred             CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEEC
Confidence            45788888776543 2212   22  236778888888765    34466667765 444444443332    4567888


Q ss_pred             CEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeeeeeecCc
Q 008041          172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       172 ~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      +.|.-.+   .+|++-++..+.....+.   +... ..++|++.+|+-....+ ..|..-++......      .+....
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~------~Lt~~~  226 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV------VLTEAN  226 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE------ECSCSC
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE------EEeCCC
Confidence            8888665   688888887765443333   2222 34669999888765322 35666666655422      111111


Q ss_pred             eeEEeEEecCCcccCCCcEEEEEEc--CCeEEEEEcC
Q 008041          248 VFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQ  282 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~  282 (579)
                        +  .+++     |++.+|..++.  .+.|..-+++
T Consensus       227 --~--~~~~-----~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          227 --I--EHYN-----VYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             --E--EEEE-----EETTEEEEEECSSSCEEEEEETT
T ss_pred             --c--ceEE-----ECCCEEEEEECCCCcEEEEEECC
Confidence              1  2344     77777776533  2345444443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.48  E-value=9.5  Score=38.11  Aligned_cols=101  Identities=10%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEeec------CCCCeeEEEEccC----CCEEEEEC-------
Q 008041          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFRA------STKGISCMAVSSD----GKMLATAA-------  178 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~------~~~~v~~l~~~p~----g~~l~~~~-------  178 (579)
                      ...++++|.|+|+.+++-...+.|++++..+++..  ..+..      ....+..|+|+|+    +.+.++-+       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45789999999986665433347988886555432  22221      2356779999995    44444431       


Q ss_pred             -------CeEEEEECCCC-------eeeE-Eeec-CCCCEEEEEEecCCCEEEEEe
Q 008041          179 -------GQLKTFNCSDH-------KKMQ-KFSG-HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       179 -------~~i~vwd~~~~-------~~~~-~~~~-h~~~v~~l~~s~~~~~l~s~~  218 (579)
                             ..|.-|+...+       +.+. .+.. .......|.|.|||.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   24555654321       1222 2221 123468899999998777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.15  E-value=1.1  Score=45.35  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECCCC------ee-------eEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH------KK-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~------~~-------~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~  223 (579)
                      .....+.++|||+++++++   .++.++|++.-      +.       +.... -.......+|.++| ..+++-.-|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence            3456789999999999998   69999998742      11       22222 22345678999999 56666668999


Q ss_pred             EEEEEcCCC------ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          224 IALWRTDGV------KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       224 i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      |--|++...      +.. ...+..+.-+-..-.....-.....++|++|++.+.
T Consensus       401 vvkWni~~a~~~~~g~~~-~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKV-NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EEEEeccHHHHHhcCccC-CeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            999998653      111 113333333333333332223334488899888854

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.36  E-value=10  Score=36.19  Aligned_cols=102  Identities=13%  Similarity=0.177  Sum_probs=64.2

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEe----ecCCCCeeEEEEccC----CCEEEEE---C-CeEE
Q 008041          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKF----RASTKGISCMAVSSD----GKMLATA---A-GQLK  182 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~----~~~~~~v~~l~~~p~----g~~l~~~---~-~~i~  182 (579)
                      -...++++|.|+|..+++--..|.|++++...++..  ..+    .........|+++|+    +.+.++-   . +.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            356799999999987666544899999986655432  111    123457899999995    5444431   2 5676


Q ss_pred             EEECCCC----------eee-EEee-cCCCCEEEEEEecCCCEEEEEe
Q 008041          183 TFNCSDH----------KKM-QKFS-GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       183 vwd~~~~----------~~~-~~~~-~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      -|....+          +.+ ..+. +....-..|.|.|||.++++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            6765541          222 2232 1122346799999998777755

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.99  E-value=23  Score=37.94  Aligned_cols=143  Identities=15%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             CcEEEEEECCCeEEEEEccC------CeEE--EEe--cCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           86 SSLLVLGTGGGDVLALAVSA------GQLK--WRL--SDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~------~~~~--~~~--~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                      ...|.+|+..+-+.++|..+      +...  ..+  ..+ ....|.++...++|...+.++..+-+..+|..+++....
T Consensus       429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~  508 (758)
T 3ott_A          429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL  508 (758)
T ss_dssp             TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred             CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence            45578888887889998763      1121  111  111 123599999988888655334445588899877654432


Q ss_pred             eec---CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee--cC-CCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          155 FRA---STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GH-PGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       155 ~~~---~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~--~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ...   ....+.++....+|.+.+...+-+..||..+++.. .+.  +- ...|.++... +|...+ ++ .+| |..++
T Consensus       509 ~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~lWi-~t-~~G-l~~~~  583 (758)
T 3ott_A          509 FADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSIWV-ST-TNG-LWIID  583 (758)
T ss_dssp             CTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEEEE-EE-SSC-EEEEE
T ss_pred             cCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEEC-CCCEEE-EC-CCC-eEEEc
Confidence            211   12367888888888887766666888887665432 121  11 2457777664 665444 44 355 88889


Q ss_pred             cCCCc
Q 008041          229 TDGVK  233 (579)
Q Consensus       229 ~~~~~  233 (579)
                      ..+.+
T Consensus       584 ~~~~~  588 (758)
T 3ott_A          584 RKTMD  588 (758)
T ss_dssp             TTTCC
T ss_pred             CCCce
Confidence            87764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.24  E-value=19  Score=35.94  Aligned_cols=101  Identities=12%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             CCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC---ceeeEee---------cCCCCeeEEEEccC----CCEEEEEC--
Q 008041          118 GGVSAISFATHGS-CIYSAGADGMVCEIDPLTG---SLLGKFR---------ASTKGISCMAVSSD----GKMLATAA--  178 (579)
Q Consensus       118 ~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~---~~~~~~~---------~~~~~v~~l~~~p~----g~~l~~~~--  178 (579)
                      ...+.|+|.|+|. .++.+...|.|++++....   ..+..+.         .....+..|+++|+    +.+.++-+  
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3568999999996 4666678999999975322   1122111         11457889999996    55444422  


Q ss_pred             ------------CeEEEEECCC----------CeeeEEee--cCCCCEEEEEEecCCCEEEEEe
Q 008041          179 ------------GQLKTFNCSD----------HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       179 ------------~~i~vwd~~~----------~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                                  ..|.-|.+..          .+.+..+.  .....-..|.|.|||.+.++.|
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence                        1444465532          23343433  2223467899999998777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	579
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1kb0a2	573	b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1flga_	582	b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d2ad6a1	571	b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c	3e-05
d1kv9a2	560	b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen	3e-05
d1w6sa_	596	b.70.1.1 (A:) Methanol dehydrogenase, heavy chain	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161
            +S        S     G         G  + S   D  +   D  TG  L         
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
           +  +   S GK + + A    L+ ++  + + M+  + H   V  + F     YV++ + 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS- 308

Query: 220 GERYIALW 227
            ++ + +W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 2e-12
 Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 8/168 (4%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
             +      A CS D  +++W     + + E  +         +        +S      
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
              S         GS           +    VS G     L   H   V  + F + G  
Sbjct: 210 TKKSGKPGPFLLSGSR-------DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKF 261

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
           I S   D  +   D      +    A    ++ +        + T + 
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 44/315 (13%), Positives = 85/315 (26%), Gaps = 53/315 (16%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            S +  +   F P        S DA IK+WD   G  +        +     + +  +  
Sbjct: 17  RSPVTRV--IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 63  HLSVDYTCMKWLSVDRKKKRKL---------------GSSLLVLGTGGGDVLALAVSAGQ 107
                   +K       +  +                    +V  +    +    V  G 
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
                   H   V  +     G+ I S   D  V      T     + R     + C++ 
Sbjct: 135 CVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 168 SSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHPGAVRFM 205
           + +    + +                         +K ++ S    +    GH   VR +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAG 264
            F   GK++LS A  ++ + +W       ++  C+  +  H                   
Sbjct: 254 LFHSGGKFILSCA-DDKTLRVWDY-----KNKRCMKTLNAHEHFVTSLDFHKTAP----- 302

Query: 265 LYVLAISETGVCYIW 279
            YV+  S      +W
Sbjct: 303 -YVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 37/296 (12%), Positives = 79/296 (26%), Gaps = 60/296 (20%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC----------- 164
           H   V+ + F    S + SA  D  +   D  TG      +  T  +             
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 165 -------------------------------MAVSSDGKMLATAA--GQLKTFNCSDHKK 191
                                          +++  +G  + +A+    +K +       
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQ--------SASCVLA 242
           ++ F+GH   VR +  + +G  + S S      + +  T   K +               
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302
               +   +    +       G ++L+ S      +W       L               
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 303 NSKSQKSATAA------IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED 352
           +S  +   + A      ++  K +  +K  + H      L    +    +V    D
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 12/161 (7%), Positives = 45/161 (27%), Gaps = 13/161 (8%)

Query: 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
                   ++ +       ++ +A+    +K ++       +   GH  +V+ ++F  + 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS- 70

Query: 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271
                       +    +  +  +            +      + +  +   G ++++ S
Sbjct: 71  ----------GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312
                 +W  Q    ++     +        N      A+ 
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 28/170 (16%)

Query: 18  DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77
             F   + DA  K+WD  +G  +  F                   H S D   + +   +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTF-----------------TGHES-DINAICF-FPN 237

Query: 78  RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137
                  G++           L    +  +L     D    G++++SF+  G  + +   
Sbjct: 238 -------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290

Query: 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFN 185
           D      D L     G        +SC+ V+ DG  +AT +    LK +N
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 28/175 (16%), Positives = 46/175 (26%), Gaps = 17/175 (9%)

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                 H G V ++S A       S   D      D   G     F      I+ +    
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 170 DGKMLATAAG----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225
           +G   AT +     +L                    +  ++FS +G+ +L+    +    
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCN 295

Query: 226 LWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
           +W         A     +  H          D+G        V   S      IW
Sbjct: 296 VWDA-----LKADRAGVLAGHDNRVSCLGVTDDGM------AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
           H   + A+ + T    + SA  DG +   D  T + +      +  +   A +  G  +
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 23/135 (17%)

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
            K ++  +    Q F+GH   +  + F  NG    + +              +       
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT---------CRLFDLRAD 258

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-------- 292
             +   +       I +     +G  +LA  +   C +W     +               
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

Query: 293 ------TKILSSSED 301
                   + + S D
Sbjct: 319 GVTDDGMAVATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            S+I  I   F P  + FA  S DA  +++D    Q    +                  +
Sbjct: 226 ESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTY----------------SHD 267

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
           ++    T + +    R         LL+ G    +              L+  H   VS 
Sbjct: 268 NIICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSC 317

Query: 123 ISFATHGSCIYSAGADGMVC 142
           +     G  + +   D  + 
Sbjct: 318 LGVTDDGMAVATGSWDSFLK 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 24/307 (7%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
            ++T      +     S D  +K+W  + G+             +S   + +     +  
Sbjct: 18  HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVL--------GTGGGDVLALAVSAGQLKWRLSDCHPGG 119
              +             G +  V            G     L V   +    L       
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178
            +       G  + S   D MV   DP T + L   +  T      ++  DG  + + + 
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSL 195

Query: 179 -GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237
              ++ ++      +   +GH      M   DN   +L S   +  + +W      +   
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK-TGQCLQ 251

Query: 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297
           +     +H +     +   N        +V+  S+ G   +W  +  E +RN    +   
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN--------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 298 SSEDVNS 304
           S   V  
Sbjct: 304 SGGVVWR 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 50/237 (21%)

Query: 110 WRLSDC--------HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160
           WR  +         H   V + + F   G+ I S   D  +     +TG  L      T 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM--------------- 205
           G+    +  +  +  +    LK +N    + +    GH   VR M               
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 206 -------------TFSDNGKYVLSSAVGERYIALWRTDGVKK----QSASCVLAMEHPAV 248
                            +   V       R +     D + K    ++ +C+  ++    
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305
            +     D       G++V++ S      +W  +    +      + L+S  ++   
Sbjct: 179 RVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 28/210 (13%), Positives = 47/210 (22%), Gaps = 17/210 (8%)

Query: 7   RDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS 65
            D             +    +   +I  T     +    D       +           +
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQKAGRLVWPT 213

Query: 66  VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF 125
                 +        K       L            A       W+    H         
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAE-------RADGWRPGGWQQVAYHRALDRIYLL 266

Query: 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQL 181
                      A   V  +D  TG  L KF      I  + VS D K L  A       L
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTL 325

Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
              +    ++++  +      + +T +D G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 20/279 (7%), Positives = 57/279 (20%), Gaps = 62/279 (22%)

Query: 12  SFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETT--------- 52
             +    + A  S              ++++D +      +     +             
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 53  -SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA------ 105
            +  G  L     S            +  KR L                           
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 106 ------GQLKWR----LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154
                 G  +              ++  +++     +      G + +ID  +G      
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 232

Query: 155 ---------------------FRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKK 191
                                            +               +   +    ++
Sbjct: 233 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVL-SSAVGERYIALWRT 229
           + KF      +  +  S + K +L + + G++ + +   
Sbjct: 293 LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 49.6 bits (117), Expect = 7e-07
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 96  GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155
           G +LA    A +  W +    P     ++  T G+ ++   ADG +      TG  L + 
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAGNVVFQGTADGRLVAYHAATGEKLWEA 514

Query: 156 RASTKGISC-MAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK 212
              T  ++       DG+  ++ A G    +         + +   G     TF   GK
Sbjct: 515 PTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYG-----LAARATERQGPGTVYTFVVGGK 568

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSS 217
           ISC A + D   +A      ++  +  S +K  ++ +   H G V  + ++ +   +++ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
              +R   +W   G   +    +L +   A  +    
Sbjct: 70  G-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 13/165 (7%), Positives = 39/165 (23%), Gaps = 11/165 (6%)

Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATA 177
           +S  ++    + I     +  V   +        + + +     ++ +  + D   + T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 178 A--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
                   +       K                    +   +   G R I++   +    
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
                   +           + +       + + A S    C I+
Sbjct: 130 WW------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 34/270 (12%), Positives = 79/270 (29%), Gaps = 5/270 (1%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            FS   +Y A    +   +++    G +    +D ++        N        +    +
Sbjct: 69  KFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
            + S D K         L+      +   + +  G  +   S  +      +   +    
Sbjct: 128 CF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK 191
           +         C +       +     S      +A  S  + +     +          +
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251
            +  +GH  +V  + F+ +G+ V+S +  +R + LW       +S S         V   
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 252 CR--CIDNGGVDDAGLYVLAISETGVCYIW 279
                + +        Y+L+ S+      W
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 152 LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG------------- 197
           L K    T  + C+  S+DG+ LAT      + +  SD   + + S              
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 198 -----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252
                    +R + FS +GK++ + A           +              +   +   
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 253 RCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEELRNTKATKILSSSEDVNSKSQKS 309
                 G  D  + +  +             G     +       I + S D   +   S
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349
            T  +   +L    +  + H    Y ++     Q ++  S
Sbjct: 235 ETGFLV-ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                 H   V ++ FA  G    S G D ++       G+ + + +  +  +    +S 
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISV 316

Query: 170 DGKMLATAAG 179
           D K + T +G
Sbjct: 317 DDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 10/111 (9%)

Query: 116 HPGGVSAISFATHGSC---IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
             G   A SF               D ++    P     +       + +  + +S+  +
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTR 64

Query: 173 MLATAAG------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
            + T          +                    +R      +G  ++  
Sbjct: 65  HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 10/115 (8%), Positives = 35/115 (30%), Gaps = 5/115 (4%)

Query: 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
                + ++ +   G  +          E+  +      +       +  +  +  GK  
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
            +      L  +       + +      +V     S + KY+++ + G++   ++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS-GDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 166 AVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY 223
            V++DG+M                +  ++ +   H   V  +T S+  ++V +   G+  
Sbjct: 16  HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG--GKGC 73

Query: 224 IALWR-TDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258
           + +W  +    K   S +  +        C+ + +G
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 7/228 (3%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSV--DYT 69
           + SP     AI     R+++        +    D  +      +    +   L+   D +
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 70  CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFAT 127
            +  L  D         +L+                  L                 +   
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
                        +  +D  TG +  +  R         AV+        A   L++F+ 
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL 267

Query: 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
             +  +++    P +   +  S +G  V         +A +  + ++K
Sbjct: 268 EKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 16/159 (10%), Positives = 36/159 (22%), Gaps = 10/159 (6%)

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGIS--CMAVSSDGKMLATAAGQ--------L 181
           I +      +  ID    ++      +  G +     V+  G++      +        L
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241
            T        +        ++     S +GK +       R           + +     
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
            +     F   R I        G  +  +          
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166
            P    +++ +T GS ++  GA G +   D  T    G+          +A
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 48/373 (12%), Positives = 102/373 (27%), Gaps = 29/373 (7%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
             V     G +  +   + ++   +       V     +  G  +   G D  +  ID  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 148 TGSL-----LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP 199
                    +     +    S      + +     A    Q    +    +  Q  S   
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 200 GAVRFMTFSDNGKY---VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256
             V   T+    +    + S    E  + +  T  V   +   +  +   ++       D
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211

Query: 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK----SATA 312
            G       ++ A + +    +   ++          K        N    K     +T+
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271

Query: 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372
            +    +  I      H   A+  + +   Q       +  +   S   V    +     
Sbjct: 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT-HPKSSHLYVDTTFNPD--- 327

Query: 373 SKRGRYVQNRVTALDRAN--AEDAVLPLPKILDSYDKKNR--HQNLSSDLDEVMTDVVDS 428
                 +   V   D  N  A+  VLP+ +  D  +   R      +   DEV   V + 
Sbjct: 328 ----ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 429 ESQAKFMEIKDDK 441
           ++ +  + + DDK
Sbjct: 384 KNDSSALVVVDDK 396

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 13/165 (7%), Positives = 30/165 (18%), Gaps = 18/165 (10%)

Query: 15  PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74
                    S  +     D +      E              ++     L         L
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEV------------VSKPFVIPLIPGSPNPTKL 235

Query: 75  SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS 134
                          +                       +      S        +    
Sbjct: 236 VPR--SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293

Query: 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
           A   G++ + D  T  +          ++ + +S+D K +     
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKD 334

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 14/132 (10%)

Query: 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG-------MVCEIDPLTGSLLGKFRASTKG 161
           K  +    PG  +            +   D            +DP    ++    +S   
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
            S             A   G L  ++       +K +     +  +  S + K V+    
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRK- 333

Query: 220 GERYIALWRTDG 231
            +  I  +  + 
Sbjct: 334 DDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 169 SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL-SSAVGERYIAL 226
            DG ++A  + GQ    + S    ++     P  +R++    + K           ++ +
Sbjct: 13  LDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70

Query: 227 WRTDGVKKQ 235
           +     K +
Sbjct: 71  YDYRTGKAE 79

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 17/228 (7%), Positives = 44/228 (19%), Gaps = 12/228 (5%)

Query: 13  FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM- 71
            SP            +      +    + E    A                + +      
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 72  -KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------VSAIS 124
                      +    +                 +                     +   
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAAGQLK 182
           F        +A        +D  TG    +  A  +    + +    D   +     +L 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 183 TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
            ++    K ++  +        + F   G  +         +A++  D
Sbjct: 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 46/239 (19%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
           +     +Y  + +    + + D     V             +          ++ D    
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--------MAPD---- 50

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFA 126
                          +  VL    GD+  + +   +  +  +           + + + +
Sbjct: 51  -------------NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 127 THGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGK 172
             G  +Y+                  +       G      R     + +  M  + DG 
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231
           +   A   +   +    K            R    + +  Y           ++  T  
Sbjct: 158 LY-VAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 14/160 (8%), Positives = 35/160 (21%), Gaps = 29/160 (18%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
             +  F       A           D   G+  T                +   +   + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT----------------QEFADLTELY 254

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
           +T ++                  +      +    +   +L    +         ++F  
Sbjct: 255 FTGLRS-----------PKDPNQIYGVLNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDK 301

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
            G  +Y  G    +   +P T   +   +     +S    
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
           I+C  +  +   + T A    ++ ++  + K + + SGH G V  + ++  G  V  S  
Sbjct: 16  ITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73

Query: 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
               +   +              +    +      
Sbjct: 74  RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 6/68 (8%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAV 219
            +         +L + +  Q   +N    K +          +  + F            
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 344

Query: 220 GERYIALW 227
           G+ ++ + 
Sbjct: 345 GQSFLEIL 352

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 10/95 (10%), Positives = 20/95 (21%), Gaps = 1/95 (1%)

Query: 164 CMAVSSDGKMLATAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
            +  +  G  +    G  + T         + ++ H         S +G Y  S  V   
Sbjct: 22  VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN 257
                 T        +  +                
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 92  GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
               G + A+   +G++ W   +  P     ++  T G+ +++   DG     D  +G  
Sbjct: 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFTGTGDGYFKAFDAKSGKE 519

Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAG 179
           L KF+  +  +S  +    DG+  L    G
Sbjct: 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 40/366 (10%), Positives = 98/366 (26%), Gaps = 68/366 (18%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            ++I  +  S      +   CSGD  +K+WD      +         ++ S + ++    
Sbjct: 14  DADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPK-----DKSYSHFVHKSGLH 64

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---------S 113
           H+ V    ++  + +          L+   +  GD+L   ++      ++         S
Sbjct: 65  HVDV-LQAIERDAFELC--------LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 115

Query: 114 DCHPGGVSAISFATHGSC-----IYSAGADGMV------------------CEIDPLTGS 150
           D       A+ +           + +    G                             
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175

Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAAG--------QLKTFNCSDHKKMQKFSGHPGAV 202
            +      ++  + + +S  G ++AT                   + +       +  ++
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262
           R + FS  G  +  +     +  +   +    +    +    H +         +  V  
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 263 A-----GLYVLAISETGVCYIW---YGQNIEELR-NTKATKILSSSEDVNSKSQKSATAA 313
                 G  + +    G    W     + I  L  +    +I      V+      A   
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 314 IFAAKL 319
           +F  K 
Sbjct: 355 VFDVKF 360

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 94  GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153
             G + A  ++ G+ KW   +        +   T G  ++ A  DG +  +D   G  L 
Sbjct: 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TKGGLVWYATLDGYLKALDNKDGKELW 499

Query: 154 KFRASTKGISC-MAVSSDGK-MLATAAG 179
            F+  + GI   M  S  GK  + +  G
Sbjct: 500 NFKMPSGGIGSPMTYSFKGKQYIGSMYG 527

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 92  GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
               G +LA      +  W++   +P   +  + +T G+ ++   A G +       G  
Sbjct: 434 AVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491

Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD 209
           L +F A +  ++  M     G+  +A  AG       +   +     G     R + F+ 
Sbjct: 492 LWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGG-ESMNLPGMKNRSRLLVFAL 550

Query: 210 NGK 212
           +GK
Sbjct: 551 DGK 553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 37/219 (16%), Positives = 60/219 (27%), Gaps = 29/219 (13%)

Query: 22  ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81
           IC                + E   +        +   +      + Y   ++        
Sbjct: 385 ICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM------LPYKAGQFFVGATLNM 438

Query: 82  RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141
                       G G + A     G  KW   +        ++  T G  ++    DG +
Sbjct: 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA--TAGDLVFYGTLDGYL 496

Query: 142 CEIDPLTGSLLGKFRASTKGISC-MAVSSDGK-MLATAAG----------------QLKT 183
              D  TG LL KF+  +  I   M  +  G   +A   G                    
Sbjct: 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGL 556

Query: 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS-AVGE 221
                 KK+  ++   G V  + FS +GK       VGE
Sbjct: 557 GAVGAFKKLANYTQMGGGV--VVFSLDGKGPYDDPNVGE 593

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 13/173 (7%), Positives = 37/173 (21%), Gaps = 3/173 (1%)

Query: 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISCMAV 167
           ++       +S I      S +     DG +        +       S      + C   
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 168 SSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
             +  +              D      F         +      KY     +   +  L 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
                +      +      +     +        ++   ++ ++ + V +   
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
               V++I F+     +Y+AG+DG++   +  T   +  F       S + ++    +L 
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIACSDNILC 308

Query: 176 TAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210
            A      KT    D    Q    +  ++  +   +N
Sbjct: 309 LATSDDTFKTNAAID----QTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 7/70 (10%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249
           + +Q        +  +    +   +L ++  +  + +++ D  + ++   + ++ +    
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITS-WDGSLTVYKFDI-QAKNVDLLQSLRYKHPL 59

Query: 250 MDCRCIDNGG 259
           + C  IDN  
Sbjct: 60  LCCNFIDNTD 69

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 34/290 (11%), Positives = 72/290 (24%), Gaps = 22/290 (7%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
           S   + +                D  IKIWD    + +        +     Y  R+   
Sbjct: 12  SETSKGV-YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 63  HLSVDYTCMKWLSVDRKKKRKL-------------GSSLLVLGTGGGDVLALAVSAGQLK 109
             S     +  ++        +             G  +         V  +A       
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
            R+   H   V+ + F        S   D  +   +  T   +       +GI+C+    
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188

Query: 170 DGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229
              +  ++   ++ ++      ++   GH      +         + S   +  I +W  
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELVRCIRFDNKRIVSGAYDGKIKVWDL 245

Query: 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
                  A          V    R      +      +++ S      IW
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIW 292

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFM 205
           GS+        K I+ ++ S+DGK L +A   G + +++ S     + F   H   +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
             +  G     S   + ++ +    G    S+  V              
Sbjct: 62  KTTSKGDLFTVS--WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAV 167
           H   ++A+S +  G  ++SA A+G +   D  TG     F       I+ +  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 2/78 (2%)

Query: 3  SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
          +  I  +  S S           +  I  WD   G     F D+ +T  T +        
Sbjct: 12 NKAITAL--SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 63 HLSVDYTCMKWLSVDRKK 80
                  +K +      
Sbjct: 70 FTVSWDDHLKVVPAGGSG 87

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 35/238 (14%)

Query: 13  FSPALDYFAICSGDARIKIWD--TLKGQVQTEFA------DIASTETTSLYGNRLEREHL 64
            S +  Y  +   D ++ + D    +     E         I +++              
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA----- 123

Query: 65  SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS 124
                   W         +      +  T G                +   H        
Sbjct: 124 ---IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE---- 176

Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAAGQLKT 183
                  I +    G +  +D    + L     S  + +    +    +   TAA     
Sbjct: 177 ------FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 184 FNCSDHKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
               D K+ +          + HPG          G    +S +G+  +AL  TD   
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	579
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.76
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.58
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.37
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.29
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.04
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.96
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.69
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.44
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.23
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.14
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.88
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.78
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.29
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.8
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.63
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.25
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.13
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.07
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.86
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.53
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.35
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.04

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-37  Score=300.46  Aligned_cols=277  Identities=14%  Similarity=0.203  Sum_probs=229.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE-----EEeccCccccccccccccccccccccccceEEeeec
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      ++.+|  .+++|||+|++||+|+ ||.|+|||+.++...     ....+|..                  .+.+++|.+.
T Consensus        50 H~~~V--~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~------------------~I~~v~~s~d  108 (337)
T d1gxra_          50 HGEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN------------------YIRSCKLLPD  108 (337)
T ss_dssp             CSSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS------------------BEEEEEECTT
T ss_pred             CCCcE--EEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCC------------------cEEEEEEcCC
Confidence            45788  5669999999999998 899999999765422     11222333                  3556666543


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  154 (579)
                               +.+|++|+.||.|++||+....  ....+ ..|...|.++.|+|++.++++++.|+.|++||+.+++....
T Consensus       109 ---------g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             ---------SSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------CCEEEEeeccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence                     7889999999999999987543  33333 67999999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ...|...+.+++|+|+++.+++++  +.|++||+++++.+..+. |...|.+++|+|+++++++++ .|+.+++||+...
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~  256 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP  256 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-ccccccccccccc
Confidence            999999999999999999999988  899999999999887765 889999999999999999987 7999999999887


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      +..      ....+...+..+.|+     |++++|++++.||.|++||..+++.+.                        
T Consensus       257 ~~~------~~~~~~~~i~~v~~s-----~~g~~l~s~s~Dg~i~iwd~~~~~~~~------------------------  301 (337)
T d1gxra_         257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIF------------------------  301 (337)
T ss_dssp             CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEE------------------------
T ss_pred             ccc------cccccccccceEEEC-----CCCCEEEEEeCCCeEEEEECCCCCEEE------------------------
Confidence            632      233445556777887     999999999999999999987664321                        


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                      ...|...|.+++|+|||++| ++||.|+++++|++
T Consensus       302 --------------------------------~~~~~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl  335 (337)
T d1gxra_         302 --------------------------------QSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV  335 (337)
T ss_dssp             --------------------------------EEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred             --------------------------------EccCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence                                            01356689999999999999 99999999999987

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-36  Score=289.85  Aligned_cols=280  Identities=15%  Similarity=0.262  Sum_probs=244.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|++++||+|+.||+|+|||+.+++++.++.+|...+..+.++++                       
T Consensus        16 H~~~I--~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-----------------------   70 (317)
T d1vyhc1          16 HRSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-----------------------   70 (317)
T ss_dssp             CSSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCCe--EEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc-----------------------
Confidence            46789  55599999999999999999999999999999999877776665555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+++.+..++.+.+|+....+....+ .+|...+.++.|+|+++.+++++.|+.+++||+.+++.+..+.+|...
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          71 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ----ccccccccccccccccccccccccccc-ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc
Confidence                788999999999999999988876544 679999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC--------------------CEEEEEec
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--------------------KYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~--------------------~~l~s~~~  219 (579)
                      +.+++|+|+++++++++  +.|++|+..+++.+..+.+|...+.++.|+|++                    .++++++ 
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  224 (317)
T d1vyhc1         146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-  224 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred             ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-
Confidence            99999999999999987  899999999999999999999999999998763                    4577776 


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      .|+.|++|++.+++     ++..+..+...+..+.++     |++++|++++.||.|++||+++++.+.           
T Consensus       225 ~d~~i~~~~~~~~~-----~~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------  283 (317)
T d1vyhc1         225 RDKTIKMWDVSTGM-----CLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCMK-----------  283 (317)
T ss_dssp             TTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCCE-----------
T ss_pred             CCCEEEEEECCCCc-----EEEEEeCCCCCEEEEEEC-----CCCCEEEEEECCCeEEEEECCCCcEEE-----------
Confidence            79999999999876     335555666677778887     999999999999999999987654321           


Q ss_pred             ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                                  .+.+|...|.+++|+|||.+| +||+.|+++++|+
T Consensus       284 --------------------------------------------~~~~h~~~V~~~~~s~~~~~l-~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 --------------------------------------------TLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE  317 (317)
T ss_dssp             --------------------------------------------EEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred             --------------------------------------------EEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEeC
Confidence                                                        344688899999999999999 9999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=298.07  Aligned_cols=304  Identities=14%  Similarity=0.192  Sum_probs=230.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .|++|||||++||+|+ |++|+|||+.+++.+..+..+.....................+.+++|.+.     
T Consensus        61 H~~~V--~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----  132 (388)
T d1erja_          61 HTSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-----  132 (388)
T ss_dssp             CSSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-----
T ss_pred             CCCcE--EEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-----
Confidence            46789  5559999999999987 899999999999999888765543322211111011112345778888764     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+|++|+.||.|++||...++.+... .+|...|.++.|++++..+++++.++.+++||..+.........+...
T Consensus       133 ----~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  207 (388)
T d1erja_         133 ----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV  207 (388)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred             ----CCcceeccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeeecccccccccccccccc
Confidence                778999999999999999999988666 679999999999999999999999999999999988887777765555


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      +....+.+++++|++++  +.|++||.+++..+..+       .+|...|.++.|+|++++|++++ .|+.|++||+...
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~  286 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEEeccCC
Confidence            44444455889999887  89999999998776654       46889999999999999999988 7999999999876


Q ss_pred             cccc-------ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcc
Q 008041          233 KKQS-------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       233 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ....       ..+......+...+.++.|+     |++++|++|+.||.|++||+++++.+..                
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------  345 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLLM----------------  345 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEEE----------------
T ss_pred             ccccccccccccceeeecccccceEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCcEEEE----------------
Confidence            4321       11233334455566777787     9999999999999999999887765432                


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe------ecCCcceeeccccceecccceee
Q 008041          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN------CSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~------~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                             +.+|.+.|.+++      |+|||.+| +|||.|+++++|++
T Consensus       346 ---------------------------------------l~~H~~~V~~~~~~~~~~~spd~~~l-~s~s~Dg~I~iW~~  385 (388)
T d1erja_         346 ---------------------------------------LQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY  385 (388)
T ss_dssp             ---------------------------------------EECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred             ---------------------------------------EeCCCCCEEEEEEecCcccCCCCCEE-EEEeCCCEEEEEee
Confidence                                                   224555555543      67899999 99999999999998


Q ss_pred             e
Q 008041          380 Q  380 (579)
Q Consensus       380 ~  380 (579)
                      +
T Consensus       386 ~  386 (388)
T d1erja_         386 K  386 (388)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-34  Score=280.75  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=205.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++++++|+|+.||.++ ++.|.+||+.++.....+.+|...+.++.|+++                           +.+
T Consensus        21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~---------------------------g~~   72 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS---------------------------GYY   72 (311)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred             EEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC---------------------------CCe
Confidence            4569999999999986 567999999999988888877776666666555                           889


Q ss_pred             EEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      |++|+.||.|++||+.+++.. ...+.+|.++|.+++|+|+++++++++.  +..+++|++.+++...++.+|...|+++
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred             EeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999987643 2334679999999999999999999885  4569999999999999999999999999


Q ss_pred             EEccCCCE-EEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041          166 AVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       166 ~~~p~g~~-l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +|+|++++ +++|+  +.|++||+++++....+.+|..+|+++.|+|+++++++++ .|+.|++||...+...   ..+.
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~---~~~~  228 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKT---GVFE  228 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEE---EECB
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc-cccccccccccccccc---cccc
Confidence            99999985 66665  8999999999999999999999999999999999999987 7999999999887533   1111


Q ss_pred             -----eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          243 -----MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       243 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                           ...+...+.++.|+     |++++|++|+.||.|++||+++++.+.
T Consensus       229 ~~~~~~~~h~~~V~~~~~s-----~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWS-----PDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccC-----CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence                 11233456678887     999999999999999999998887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-33  Score=274.68  Aligned_cols=282  Identities=15%  Similarity=0.181  Sum_probs=236.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|++++||+|+.||+|+|||+.+++.+..+..|...+.++.|+++                       
T Consensus        54 H~~~I--~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-----------------------  108 (340)
T d1tbga_          54 HLAKI--YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-----------------------  108 (340)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-----------------------
T ss_pred             CCCCE--EEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc-----------------------
Confidence            46789  55599999999999999999999999999999999877766666555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++|+.++.+.+|+......   ......+|........... +..+..+..|.....++............+
T Consensus       109 ----~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred             ----ceeeeeecccceeecccccccccccccceeccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                78899999999999999876542   2223356777766666554 557778889999999998888777777778


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~  236 (579)
                      ...+....+.+.+.++++++  +.|++||+++++.+.++.+|..+|++++|+|++++|++++ .|+.|++|++...... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~-  261 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccccc-
Confidence            88999999999999999987  8999999999999999999999999999999999999988 7999999999887643 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                        .......+...+..+.|+     |++.+|++|+.||.|++||+.+++.+.                            
T Consensus       262 --~~~~~~~~~~~i~~~~~s-----~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------  306 (340)
T d1tbga_         262 --MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRAG----------------------------  306 (340)
T ss_dssp             --EEECCTTCCSCEEEEEEC-----SSSCEEEEEETTSCEEEEETTTCCEEE----------------------------
T ss_pred             --cccccccccCceEEEEEC-----CCCCEEEEEECCCEEEEEECCCCcEEE----------------------------
Confidence              223334445556777887     999999999999999999987664321                            


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                 .+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus       307 ---------------------------~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 ---------------------------VLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             ---------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             ---------------------------EEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence                                       334688899999999999999 9999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-34  Score=289.84  Aligned_cols=321  Identities=10%  Similarity=0.022  Sum_probs=225.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .||  .|++|||||++||+|+.||.|+|||..+++  +...+++|..++.++.|+++                       
T Consensus         8 ~pI--t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~-----------------------   62 (371)
T d1k8kc_           8 EPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-----------------------   62 (371)
T ss_dssp             SCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-----------------------
T ss_pred             CCe--EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC-----------------------
Confidence            689  555999999999999999999999998776  55667777666665555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEee
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFR  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~  156 (579)
                          +.+|++|+.|+.|++||+.++..... ...+|...|++++|+|+++.|++++.|+++++|++.....    .....
T Consensus        63 ----~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~  138 (371)
T d1k8kc_          63 ----SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK  138 (371)
T ss_dssp             ----TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred             ----CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccc
Confidence                78899999999999999998875433 2367899999999999999999999999999999876543    23345


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC------------------eeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH------------------KKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                      .|...|.+++|+|++++|++|+  +.|++||....                  +.+....+|...|.+++|+|+++++++
T Consensus       139 ~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence            6788999999999999999987  89999997643                  345667789999999999999999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      ++ .|+.|++||+..+..     +..+..+...+..+.|+     |++.+|++| .|+.+++|..+..............
T Consensus       219 ~~-~d~~i~iwd~~~~~~-----~~~~~~~~~~v~s~~fs-----~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
T d1k8kc_         219 VS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDV  286 (371)
T ss_dssp             EE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred             cc-cCCcceEEeeecccc-----eeeeecccccceeeeec-----CCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecC
Confidence            88 799999999987653     34555556667778887     898877755 5777767654433211111100000


Q ss_pred             eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc----eeecccccee
Q 008041          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV----LLPMSQSLLK  372 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~----~l~~s~s~d~  372 (579)
                      ...   ...................  ..        .+... ........|.+.|.++++.+++.    .+ +|+|.|+
T Consensus       287 ~~~---~~~~~~~~~~~~~~~~~~~--~~--------~~~~~-~~~~~~~~H~~~I~~i~~~~~~~~~~~~~-~T~g~Dg  351 (371)
T d1k8kc_         287 PKQ---SSQRGLTARERFQNLDKKA--SS--------EGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQF-CTTGMDG  351 (371)
T ss_dssp             C-----------CHHHHHHHCCCCC--------------------CCCSSSSSSCEEEEEEEESTTTSCSEE-EEEETTS
T ss_pred             ccc---cccccccceeeEeccccee--EE--------ecccc-ccceecccccCCEEEEEEeCCCCcceEEE-EEEcCCC
Confidence            000   0000000000000000000  00        00000 00001125999999999887653    35 8999999


Q ss_pred             cccceeee
Q 008041          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      .+++|++.
T Consensus       352 ~v~iW~~~  359 (371)
T d1k8kc_         352 GMSIWDVR  359 (371)
T ss_dssp             EEEEEEHH
T ss_pred             eEEEEeCC
Confidence            99999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6e-33  Score=269.52  Aligned_cols=240  Identities=19%  Similarity=0.238  Sum_probs=194.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++.+|  .+++|+|+|++||+|+.||+|+|||+.++..  ...+..|...+.                  ++.|.+.   
T Consensus        57 H~~~v--~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~------------------~v~~s~d---  113 (311)
T d1nr0a1          57 HSHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK------------------DISWDSE---  113 (311)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE------------------EEEECTT---
T ss_pred             CCCCE--EEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc------------------ccccccc---
Confidence            35778  5669999999999999999999999988764  344555554444                  4555442   


Q ss_pred             cccccCCcEEEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee
Q 008041           80 KKRKLGSSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                            +.++++++.+.  .+++|+..+++....+ .+|...|++++|+|++++ +++|+.|+.|++||+++++....+.
T Consensus       114 ------~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~  186 (311)
T d1nr0a1         114 ------SKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG  186 (311)
T ss_dssp             ------SCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred             ------ccccccccccccccccccccccccccccc-cccccccccccccccceeeecccccccccccccccccccccccc
Confidence                  67788887654  4999999998877555 689999999999999986 8889999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-------cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw  227 (579)
                      .|..+|+++.|+|+++++++++  +.|++||..+++.+..+.       +|.+.|.+++|+|++++|++++ .|+.|++|
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iw  265 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIW  265 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEE
Confidence            9999999999999999999987  899999999988777663       6889999999999999999988 79999999


Q ss_pred             EcCCCccccceeeeeeecCce-eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          228 RTDGVKKQSASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      |+++++..     ..+..+.. ......+.     +++.+|++++.||.|++||.+
T Consensus       266 d~~t~~~~-----~~l~~~~~~~~~~~~~~-----~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         266 NVATLKVE-----KTIPVGTRIEDQQLGII-----WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTTTEEE-----EEEECCSSGGGCEEEEE-----ECSSCEEEEETTCCEEEEETT
T ss_pred             ECCCCcEE-----EEEECCCCccceEEEEE-----ecCCEEEEEECCCEEEEEeCC
Confidence            99987633     33332221 11222333     566789999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-31  Score=258.44  Aligned_cols=235  Identities=17%  Similarity=0.243  Sum_probs=198.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +++|  .+++|+|||++|++|+.||.|++||+...  +....+..+...+....|+++                      
T Consensus        97 ~~~I--~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------  152 (337)
T d1gxra_          97 DNYI--RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD----------------------  152 (337)
T ss_dssp             TSBE--EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT----------------------
T ss_pred             CCcE--EEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccc----------------------
Confidence            4567  55699999999999999999999998744  455555555444443333333                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +.++++++.++.|++|++.+++..... .+|...|++++|++++..+++++.|+.|++||+++++.+..+. +..
T Consensus       153 -----~~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~  225 (337)
T d1gxra_         153 -----SKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS  225 (337)
T ss_dssp             -----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             -----ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccceeecccc-ccc
Confidence                 778999999999999999999887655 6799999999999999999999999999999999999887775 778


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|.+++|+|+++++++++  +.|++||+++++.. ....|...|++++|+|++++|++++ .|+.|++||+.+++.    
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~~~~----  299 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS----  299 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE----
T ss_pred             ceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe-CCCeEEEEECCCCCE----
Confidence            999999999999999987  89999999988765 4567999999999999999999988 799999999998763    


Q ss_pred             eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                       +....+.. .+..+.|+     |++++|++++.||+|+|||+
T Consensus       300 -~~~~~~~~-~v~~~~~s-----~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 -IFQSKESS-SVLSCDIS-----VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -EEEEECSS-CEEEEEEC-----TTSCEEEEEETTSCEEEEEE
T ss_pred             -EEEccCCC-CEEEEEEe-----CCCCEEEEEeCCCeEEEEEE
Confidence             34555554 45566777     99999999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-31  Score=258.87  Aligned_cols=281  Identities=13%  Similarity=0.111  Sum_probs=209.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCccccccccccccccccccccccceEEeeeccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+|||++||+|+.||+|++||+.++++...+. .|..                  .++++.|.+.    
T Consensus        11 H~~~V--~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~------------------~v~~v~~~~~----   66 (299)
T d1nr0a2          11 HNKAI--TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT------------------MITGIKTTSK----   66 (299)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS------------------CEEEEEECTT----
T ss_pred             CCCCc--EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCC------------------cEEEEEeecc----
Confidence            46789  555999999999999999999999999999887764 2333                  3455555542    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  158 (579)
                           + .+++++.|+.+++|+.......  ......|...+.+++|+|+++.++++ .++.+++|+..  +.....  .
T Consensus        67 -----g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          67 -----G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             -----S-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred             -----c-eeecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccc--cccccc--c
Confidence                 3 3677888999999998764321  11223577889999999999877665 46789999953  332222  3


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ...+.+++|+|+++++++++  |.|++||+++++... ....|...|++++|+|+++++++++ .|+.|++||+.++...
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFEL  214 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            44678999999999999987  899999998887543 3457899999999999999999987 7999999999876533


Q ss_pred             cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                      .  ....+..+...+.++.|+     |++.+|++|+.||.|++||+.++......                         
T Consensus       215 ~--~~~~~~~h~~~v~~l~~s-----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-------------------------  262 (299)
T d1nr0a2         215 A--HTNSWTFHTAKVACVSWS-----PDNVRLATGSLDNSVIVWNMNKPSDHPII-------------------------  262 (299)
T ss_dssp             S--CCCCCCCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTCTTSCCEE-------------------------
T ss_pred             c--cccccccccccccccccc-----ccccceEEEcCCCEEEEEECCCCCcceEE-------------------------
Confidence            1  222334455667778887     99999999999999999998765321100                         


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                  ....|........+++++.+| +|+|.|+++++|++
T Consensus       263 ----------------------------~~~~~~~~~v~~~~~~~~~~l-~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         263 ----------------------------IKGAHAMSSVNSVIWLNETTI-VSAGQDSNIKFWNV  297 (299)
T ss_dssp             ----------------------------ETTSSTTSCEEEEEEEETTEE-EEEETTSCEEEEEC
T ss_pred             ----------------------------EecCCCCCcEEEEEECCCCEE-EEEeCCCEEEEEec
Confidence                                        000223333444456677888 89999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7e-30  Score=251.12  Aligned_cols=314  Identities=12%  Similarity=0.145  Sum_probs=225.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  ++ +++++|++||+|+.||+|+|||+.+++++.++.+|...+.++.|++                         
T Consensus        12 ~~~v--it-c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-------------------------   63 (355)
T d1nexb2          12 MTSV--IT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-------------------------   63 (355)
T ss_dssp             SSSC--EE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-------------------------
T ss_pred             CCCc--EE-EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-------------------------
Confidence            3455  43 3566789999999999999999999999999987776555444432                         


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe------
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF------  155 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~------  155 (579)
                         +..+++|+.||.|++|+....+....... .+...+....+.+++.++++++.|+.|++||+.++......      
T Consensus        64 ---~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  140 (355)
T d1nexb2          64 ---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY  140 (355)
T ss_dssp             ---TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC
T ss_pred             ---CCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee
Confidence               45799999999999999999887655532 23344566778889999999999999999999866443221      


Q ss_pred             -----------------ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041          156 -----------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       156 -----------------~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                                       ..|...+  ..+.+++++++++.  +.|++||+++++.+....++...+.++.|+|++.++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d1nexb2         141 PLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS  218 (355)
T ss_dssp             CEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             ccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeec
Confidence                             1222223  34556788888887  89999999999999999999999999999999999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      ++ .|+.|++||+.++..     +..+..+...+.++.+       ++++|++++.||.|++||++++.........  .
T Consensus       219 ~~-~d~~i~i~d~~~~~~-----~~~~~~h~~~v~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~  283 (355)
T d1nexb2         219 AS-MDTTIRIWDLENGEL-----MYTLQGHTALVGLLRL-------SDKFLVSAAADGSIRGWDANDYSRKFSYHHT--N  283 (355)
T ss_dssp             EE-TTSCEEEEETTTCCE-----EEEECCCSSCCCEEEE-------CSSEEEEECTTSEEEEEETTTCCEEEEEECT--T
T ss_pred             cc-ccceEEeeecccccc-----cccccccccccccccc-------ccceeeeeecccccccccccccceecccccC--C
Confidence            87 799999999998763     3445555555666665       4579999999999999999887654322111  1


Q ss_pred             eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCcee-EEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF-QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                      +.....++++++    .+ +++.|+.++.++        ....... ..+.+|...|.+++|+|+. ++ ++++.|+.++
T Consensus       284 ~~~~~~~~~~~~----~l-~~g~d~~i~vwd--------~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~-~~~s~dg~~~  348 (355)
T d1nexb2         284 LSAITTFYVSDN----IL-VSGSENQFNIYN--------LRSGKLVHANILKDADQIWSVNFKGKT-LV-AAVEKDGQSF  348 (355)
T ss_dssp             CCCCCEEEECSS----EE-EEEETTEEEEEE--------TTTCCBCCSCTTTTCSEEEEEEEETTE-EE-EEEESSSCEE
T ss_pred             ceEEEEEcCCCC----EE-EEEeCCEEEEEE--------CCCCCEEEEEecCCCCCEEEEEEcCCe-EE-EEEECCCcEE
Confidence            111111233333    44 444566555432        1112222 2345788899999999874 56 8889999988


Q ss_pred             ceee
Q 008041          376 GRYV  379 (579)
Q Consensus       376 ~w~~  379 (579)
                      +|-.
T Consensus       349 l~~~  352 (355)
T d1nexb2         349 LEIL  352 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.9e-29  Score=248.25  Aligned_cols=242  Identities=19%  Similarity=0.271  Sum_probs=193.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+|+|++|++|+.||.|++||..+++....+.+|...+....+++.                         
T Consensus       122 ~~V--~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------------------  174 (388)
T d1erja_         122 LYI--RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-------------------------  174 (388)
T ss_dssp             CBE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-------------------------
T ss_pred             CCE--EEEEECCCCCcceecccccccccccccccccccccccccccccccccccc-------------------------
Confidence            456  45599999999999999999999999999999888877766655555444                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeeEee------
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFR------  156 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~------  156 (579)
                        +..+++++.+|.+++||..+....... ..+ ....++.++ +++++|++++.|+.|++||..++.....+.      
T Consensus       175 --~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~  250 (388)
T d1erja_         175 --GDKLVSGSGDRTVRIWDLRTGQCSLTL-SIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG  250 (388)
T ss_dssp             --SSEEEEEETTSEEEEEETTTTEEEEEE-ECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------
T ss_pred             --cccccccccceeeeeeecccccccccc-ccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc
Confidence              677999999999999999998877554 334 445555555 488999999999999999999888766543      


Q ss_pred             -cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe------------eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041          157 -ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       157 -~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                       +|...|.+++|+|++++|++++  |.|++||+++++            .......|...|.+++|+|++++|++++ .|
T Consensus       251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~d  329 (388)
T d1erja_         251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KD  329 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TT
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CC
Confidence             5778999999999999999987  899999997653            2345567899999999999999999987 79


Q ss_pred             CeEEEEEcCCCccccceeeeeeecCceeEEeEEe-cCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI-DNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      |.|++||+.+++.     +..+..+...+..+.+ ....++|++.+|++|+.||+|++|+++
T Consensus       330 g~i~vwd~~~~~~-----~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         330 RGVLFWDKKSGNP-----LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEECCCCcE-----EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999998763     3445544444444444 345567999999999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-28  Score=239.20  Aligned_cols=311  Identities=13%  Similarity=0.145  Sum_probs=228.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  ++ +++++|++||||+.||+|+|||+.+++++.++.+|...+.+                  +.|.       
T Consensus        15 H~~~V--~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~------------------v~~~-------   66 (342)
T d2ovrb2          15 HDDHV--IT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS------------------SQMR-------   66 (342)
T ss_dssp             STTSC--EE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEE------------------EEEE-------
T ss_pred             cCCce--EE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEE------------------EEeC-------
Confidence            34566  54 47788999999999999999999999999999877655543                  3332       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++|+.|+.+++|+.......... ..+...+....+.  +..+..+..|+.+.+|+..+++....+......
T Consensus        67 ----~~~l~s~s~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  139 (342)
T d2ovrb2          67 ----DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA  139 (342)
T ss_dssp             ----TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             ----CCccccceecccccccccccccceecc-cccceeEeeeecc--cccccccccceeEEEeecccccceeeeeccccc
Confidence                347999999999999999988876555 3455666666553  457888899999999999999888777655544


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ..  ...+....++.++  +.|++||....+.+..+.+|...+..+  ++++.++++++ .|+.|++||++..+.     
T Consensus       140 ~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~~~~~-----  209 (342)
T d2ovrb2         140 VR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVETGNC-----  209 (342)
T ss_dssp             EE--EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETTTCCE-----
T ss_pred             ce--eeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeeccccee-----
Confidence            33  3344455666655  999999999999999999998776654  45788999987 799999999988763     


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe---eEEeeeccCCcccccccchhhhh
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT---KILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      +.....+...+.++.+       ++++|++++.||.|++||....+........   ...+.+   +..+++    .+++
T Consensus       210 ~~~~~~~~~~v~~~~~-------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~s  275 (342)
T d2ovrb2         210 IHTLTGHQSLTSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC---LQFNKN----FVIT  275 (342)
T ss_dssp             EEEECCCCSCEEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE---EEECSS----EEEE
T ss_pred             eeEecccccceeEEec-------CCCEEEEEcCCCEEEEEecccccccccccccceeeeceee---cccCCC----eeEE
Confidence            3444455555555544       5579999999999999999887765443321   111111   122333    7888


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEe-----cCCCCcEEEeecCCcceeeccccceec----ccceeee
Q 008041          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKIL-----VNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ  380 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~  380 (579)
                      |+.|+.++.++        ........++.     +|...|.+++|+|||.++ ++|+.||+    +++|++.
T Consensus       276 ~s~Dg~i~iwd--------~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l-a~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         276 SSDDGTVKLWD--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EETTSEEEEEE--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             EcCCCEEEEEE--------CCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE-EEEeCCCCCeeEEEEEeCC
Confidence            88877666543        22233333432     577789999999999999 99998886    7888873

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-29  Score=246.03  Aligned_cols=248  Identities=17%  Similarity=0.189  Sum_probs=185.0

Q ss_pred             eEEEEccCCCEEEEEeCCC-cEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041            9 ILTSFSPALDYFAICSGDA-RIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .+++|+|+|+.||+++.+. .|+.|+....  .....+.                 +|....++++.|.|..       +
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------gh~~~~v~~v~fsP~~-------~   76 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----------------GHGSSVVTTVKFSPIK-------G   76 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----------------TTTTSCEEEEEECSST-------T
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-----------------CCCCCCEEEEEEeeCC-------C
Confidence            4569999999999987553 3455654332  2344444                 4445566777776642       1


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE-------EEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLK-------WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~  156 (579)
                      +.+|++|+.||+|++||+..++..       ......|.++|.+++|+++++++++++.  ++.+++|+..+++.+..+.
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS  156 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee
Confidence            678999999999999999764321       1122468899999999999999887764  6789999999999999999


Q ss_pred             cCCCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEc
Q 008041          157 ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~-l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~s~~-~~~l~s~~~~d~~i~vwd~  229 (579)
                      +|...|.+++|+|+++. +++++  +.+++||..+.+....+   .+|...|.+++|+|+ +.++++++ .|+.|++||+
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i~iwd~  235 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDG  235 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEET
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc-cccceeeeee
Confidence            99999999999999876 45554  89999999988776655   456788999999997 57788777 7999999999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      ++++..     ..+..+...+....|+..  .|+|++|++++.||.|+|||+++++.+.
T Consensus       236 ~~~~~~-----~~l~~~~~~v~~~~~s~~--~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         236 KSGEFL-----KYIEDDQEPVQGGIFALS--WLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             TTCCEE-----EECCBTTBCCCSCEEEEE--ESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccc-----ccccccccccccceeeee--ccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            887633     334333322222222100  1689999999999999999998877653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.1e-28  Score=245.78  Aligned_cols=243  Identities=9%  Similarity=0.063  Sum_probs=194.3

Q ss_pred             cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 008041           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iw  144 (579)
                      .+++|++|.+.         +.++++|+.+|.|++||..+++.. ...+.+|.++|++++|+|++++|++|+.|++|++|
T Consensus         8 ~pIt~~~~s~d---------g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW   78 (371)
T d1k8kc_           8 EPISCHAWNKD---------RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   78 (371)
T ss_dssp             SCCCEEEECTT---------SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCeEEEEECCC---------CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence            46788888764         778999999999999999988642 23347899999999999999999999999999999


Q ss_pred             eCCCCcee--eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEEE
Q 008041          145 DPLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       145 d~~~~~~~--~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s  216 (579)
                      |+.++...  ..+.+|...|.+++|+|+++.+++++  +.|++|++.....    .....+|...|.+++|+|++++|++
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             eecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            99877543  44567888999999999999999987  8999998876543    2334578899999999999999999


Q ss_pred             EecCCCeEEEEEcCCCcccc-------------ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041          217 SAVGERYIALWRTDGVKKQS-------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       217 ~~~~d~~i~vwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  283 (579)
                      ++ .|+.|++|+........             .........+...+..+.|+     |++++|++++.||.|++||+.+
T Consensus       159 ~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         159 GS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-----ANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-----SSSSEEEEEETTTEEEEEEGGG
T ss_pred             cc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-----cccccccccccCCcceEEeeec
Confidence            87 79999999987643210             11233444555566778887     9999999999999999999765


Q ss_pred             ceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcce
Q 008041          284 IEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL  363 (579)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (579)
                      ++.+.                                                       .+..|..+|.+++|+|||.+
T Consensus       233 ~~~~~-------------------------------------------------------~~~~~~~~v~s~~fs~d~~~  257 (371)
T d1k8kc_         233 KMAVA-------------------------------------------------------TLASETLPLLAVTFITESSL  257 (371)
T ss_dssp             TTEEE-------------------------------------------------------EEECSSCCEEEEEEEETTEE
T ss_pred             cccee-------------------------------------------------------eeecccccceeeeecCCCCE
Confidence            43321                                                       23456778999999999999


Q ss_pred             eeccccceecccceeee
Q 008041          364 LPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       364 l~~s~s~d~~~~~w~~~  380 (579)
                      + ++|+ |+.+++|...
T Consensus       258 l-a~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         258 V-AAGH-DCFPVLFTYD  272 (371)
T ss_dssp             E-EEET-TSSCEEEEEE
T ss_pred             E-EEEc-CCceEEEEee
Confidence            8 7776 7777887764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.1e-28  Score=229.39  Aligned_cols=269  Identities=14%  Similarity=0.203  Sum_probs=204.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      ++++||++||+|+.||+|+|||+.+++++.++.+|...+.+                  +.|.           +.+|++
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~------------------v~~~-----------~~~l~s   70 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC------------------LQYD-----------ERVIIT   70 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEE------------------EECC-----------SSEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEee------------------eecc-----------cceeec
Confidence            45678999999999999999999999999999877665543                  3331           668999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeEeecCCCCeeEEEEc
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVS  168 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~  168 (579)
                      |+.||.|++|++..+........ +....  ..+.+....++++..++.+.+||......   ...+..|...+.++.+.
T Consensus        71 ~s~D~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEMLNTLIH-HCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EETTSCEEEEESSSCCEEEEECC-CCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             ccccccccccccccccccccccc-ccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceec
Confidence            99999999999999987765532 33232  33445667899999999999999886643   34466677888888877


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++  .+++++  +.|++||.++++.+..+.+|...+..+.++  +.++++++ .|+.|++||+++....     .....+
T Consensus       148 ~~--~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~~~~~~-----~~~~~~  217 (293)
T d1p22a2         148 DK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACL-----RVLEGH  217 (293)
T ss_dssp             TT--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE-----EEECCC
T ss_pred             cc--ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEecccceee-----eeeccc
Confidence            55  444444  899999999999999999999999888776  45788887 7999999999987633     333334


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      ...+.  .+.     +++.+|++++.||.|++||+.+........                                   
T Consensus       218 ~~~v~--~~~-----~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----------------------------------  255 (293)
T d1p22a2         218 EELVR--CIR-----FDNKRIVSGAYDGKIKVWDLVAALDPRAPA-----------------------------------  255 (293)
T ss_dssp             SSCEE--EEE-----CCSSEEEEEETTSCEEEEEHHHHTSTTSCT-----------------------------------
T ss_pred             ceeee--ecc-----ccceEEEEEcCCCEEEEEECCCCccccccC-----------------------------------
Confidence            43333  233     678999999999999999976543221110                                   


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                 .....+.+.+|...|.+++|  |+.+| +|+|.|+++++||
T Consensus       256 -----------~~~~~~~~~~H~~~V~~v~~--d~~~l-~s~s~Dg~i~iWD  293 (293)
T d1p22a2         256 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWD  293 (293)
T ss_dssp             -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC
T ss_pred             -----------CceeeEEecCCCCCEEEEEE--cCCEE-EEEecCCEEEEeC
Confidence                       11223356689999999888  57788 9999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.1e-28  Score=233.45  Aligned_cols=238  Identities=18%  Similarity=0.247  Sum_probs=207.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++.++++++.++.+.+|+.........+..+...+....++++                       
T Consensus        58 h~~~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  112 (317)
T d1vyhc1          58 HTDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-----------------------  112 (317)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred             CCCcE--EEEeeecccccccccccccccccccccccccccccccccccceeeeccCC-----------------------
Confidence            35678  55599999999999999999999999988888777666555544444443                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++++.|+.+++||+.+++....+ .+|...+.+++|+|++++|++++.|+.|++|++.+++....+.+|...
T Consensus       113 ----~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~  187 (317)
T d1vyhc1         113 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  187 (317)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC
Confidence                778999999999999999999887666 679999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCC--------------------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041          162 ISCMAVSSDG--------------------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~g--------------------~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      +.++.++|++                    ..+++++  +.|++||.++++++.++.+|...|.+++|+|++++|++++ 
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-  266 (317)
T d1vyhc1         188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-  266 (317)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred             ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE-
Confidence            9999998764                    3566666  8999999999999999999999999999999999999988 


Q ss_pred             CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      .||.|++||+.+++..     ..+..+...+.++.|+     |++++|++|+.||+|++||
T Consensus       267 ~dg~i~iwd~~~~~~~-----~~~~~h~~~V~~~~~s-----~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         267 DDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC
T ss_pred             CCCeEEEEECCCCcEE-----EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEeC
Confidence            7999999999987643     4555556667778887     9999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-28  Score=236.56  Aligned_cols=246  Identities=12%  Similarity=0.129  Sum_probs=181.1

Q ss_pred             CcccceEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            4 SNIRDILTSFSP--ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~l~~~fsp--dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+|  .+++|+|  +|++||+|+.||+|+|||+..+.....+..+....    +      ......+.++.|.+.     
T Consensus        64 ~~v--~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~----~------~~~~~~v~~v~~s~~-----  126 (325)
T d1pgua1          64 SVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE----F------QVLAGPISDISWDFE-----  126 (325)
T ss_dssp             SCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE----E------ECCSSCEEEEEECTT-----
T ss_pred             CCE--EEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccc----c------ccccCcEEEEEECCC-----
Confidence            567  5569998  67899999999999999987554221111100000    0      001224556666543     


Q ss_pred             cccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEe---
Q 008041           82 RKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKF---  155 (579)
Q Consensus        82 ~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~---  155 (579)
                          +..+++++.  ++.+.+|+..+++.+..+ .+|...|++++|+|++++ +++++.|+.+++||+..++....+   
T Consensus       127 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         127 ----GRRLCVVGEGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             ----SSEEEEEECCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             ----CCccceeeccccceEEEEeecccccceee-eecccccccccccccccceEEEeecccccccccccccccceecccc
Confidence                566777665  456999999999988666 679999999999999876 678999999999999888766554   


Q ss_pred             ecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe---cCCCEEEEEecCCCeEEEEEc
Q 008041          156 RASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---DNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s---~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      ..|...|.+++|+|+ +.++++++  +.|++||+++++.+.++.+|..++..+.|+   |+|++|++++ .|+.|++||+
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd~  280 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV  280 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEEC
Confidence            345678999999996 67888776  899999999999999999999888777666   7899999988 7999999999


Q ss_pred             CCCccccceeeeeeecCceeE--EeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          230 DGVKKQSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      ++++..   ..+....+....  ....+      +.+.+|++++.||.|++||+
T Consensus       281 ~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TTSKCV---QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTTEEE---EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEET
T ss_pred             CCCCEE---EEEEecCCcccCeEEEEEE------CCCCEEEEEECCCEEEEEEC
Confidence            987643   222222222111  12223      23457899999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.8e-27  Score=228.98  Aligned_cols=249  Identities=14%  Similarity=0.169  Sum_probs=196.3

Q ss_pred             CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCC
Q 008041           37 GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH  116 (579)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h  116 (579)
                      |+..+.+.+|..++.++.|+++                           +.+|++|+.||.|++||+.+++.+..+..+|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~d---------------------------g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h   54 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSAD---------------------------GKTLFSADAEGHINSWDISTGISNRVFPDVH   54 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTT---------------------------SSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred             CccceEcCCCCCCcEEEEECCC---------------------------CCEEEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence            5667778888777776666665                           7889999999999999999999887776789


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeee
Q 008041          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM  192 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~  192 (579)
                      ...|++++|+|+|+ +++++.|+.+++|+......   ......+...+.+++++|+|++++++. +.+++|+...  ..
T Consensus        55 ~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~  131 (299)
T d1nr0a2          55 ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LT  131 (299)
T ss_dssp             SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EE
T ss_pred             CCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence            99999999999986 55677899999999764422   222344667899999999999988887 8999998543  22


Q ss_pred             EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       193 ~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      ...  ....+.+++|+|+++++++++ .|+.|++||+.+.+..   ......|. ..+.++.|+     |++.+|++++.
T Consensus       132 ~~~--~~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~---~~~~~~~~-~~i~~~~~~-----~~~~~l~~~~~  199 (299)
T d1nr0a2         132 EVP--ISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVHP-AEITSVAFS-----NNGAFLVATDQ  199 (299)
T ss_dssp             EEE--CSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEECS-SCEEEEEEC-----TTSSEEEEEET
T ss_pred             ccc--ccccccccccccccccccccc-cccccccccccccccc---cccccccc-ccccccccc-----ccccccccccc
Confidence            222  345678999999999999987 7999999999876533   22333344 455667777     99999999999


Q ss_pred             CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCc
Q 008041          273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED  352 (579)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v  352 (579)
                      ||.|++||..++..+....                                                    .+.+|...|
T Consensus       200 d~~i~~~~~~~~~~~~~~~----------------------------------------------------~~~~h~~~v  227 (299)
T d1nr0a2         200 SRKVIPYSVANNFELAHTN----------------------------------------------------SWTFHTAKV  227 (299)
T ss_dssp             TSCEEEEEGGGTTEESCCC----------------------------------------------------CCCCCSSCE
T ss_pred             ccccccccccccccccccc----------------------------------------------------ccccccccc
Confidence            9999999987654332110                                                    123678889


Q ss_pred             EEEeecCCcceeeccccceecccceeee
Q 008041          353 INLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       353 ~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+++|+|+|.++ ++|+.|+.+++|++.
T Consensus       228 ~~l~~s~~~~~l-~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         228 ACVSWSPDNVRL-ATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred             ccccccccccce-EEEcCCCEEEEEECC
Confidence            999999999999 999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2e-25  Score=217.98  Aligned_cols=237  Identities=18%  Similarity=0.295  Sum_probs=194.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      +.++|  .+++|+|+|+++++|+.|+.+++|+.....    ....+.++...                  ..+..+..  
T Consensus        96 ~~~~v--~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--  153 (340)
T d1tbga_          96 RSSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------------------LSCCRFLD--  153 (340)
T ss_dssp             SCSCE--EEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC------------------EEEEEEEE--
T ss_pred             ccccE--EeeEeeccceeeeeecccceeecccccccccccccceeccccccc------------------cccccccc--
Confidence            45778  556999999999999999999999976543    23333322211                  11111111  


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                              ...+..+..++....+........... ..+...+....+.+.+.++++++.|+.|++||+++++++.++.+
T Consensus       154 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         154 --------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             --------TTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             --------ccccccccccccccccccccccccccc-cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence                    556788889999999998887766444 45778899999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      |...|++++|+|++++|++|+  +.|++||++..+.+..+  ..|...|.++.|+|++++|++++ .||.|++||+.+++
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~  303 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKAD  303 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCC
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCCCc
Confidence            999999999999999999987  89999999999887766  35667899999999999999987 79999999998876


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      .     +..+..+...+.++.|+     |++.+|++|+.||.|++||
T Consensus       304 ~-----~~~~~~H~~~V~~l~~s-----~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 R-----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred             E-----EEEEcCCCCCEEEEEEe-----CCCCEEEEEccCCEEEEeC
Confidence            3     35566566677888888     9999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.7e-27  Score=232.65  Aligned_cols=315  Identities=11%  Similarity=-0.027  Sum_probs=215.3

Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ....||| ||+++|+++ +|.|.|||..++...+.  .|...+                  .++.|.|.         +.
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v------------------~~~~~spD---------g~   55 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRI------------------RYVRRGGD---------TK   55 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCE------------------EEEEECSS---------SE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCE------------------EEEEECCC---------CC
Confidence            3458999 999999988 57999999998887653  344444                  44555443         66


Q ss_pred             EEEEEECC-C-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041           88 LLVLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~~~~~-g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      .|++++.+ | .|++||..+++.. .+ ..|...|.+++|+|+|+++++++.++.+++|++.+++....+..+...+.++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             EEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence            67766554 3 5999999998875 33 5799999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          166 AVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       166 ~~~p~g~~l~~~~------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +|+|+|++|+.+.            +.+++||..+++.. .+..|...+..+.|+|+|++|++++ .|+.+.+|+.....
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~~~d~~~~~  211 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLS-YRSLDPSPDRVVLN  211 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEECSSSSC
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEe-CCCceEcccccccc
Confidence            9999999998653            36999999988765 4455778889999999999999987 79999999976653


Q ss_pred             ccc--ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCcee--ecccCCeeEEeeeccCCc
Q 008041          234 KQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEE--LRNTKATKILSSSEDVNS  304 (579)
Q Consensus       234 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  304 (579)
                      ...  .........+........++     +++..++++..+.     .+..++...++.  +.........+.... ++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  285 (360)
T d1k32a3         212 FSFEVVSKPFVIPLIPGSPNPTKLV-----PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV-HG  285 (360)
T ss_dssp             EECCSCBEEEEEESSTTCCCGGGCC-----CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC-CC
T ss_pred             eeeccccceEEEecccCccccceEC-----CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEe-cC
Confidence            210  00111111222222222333     6666665554332     244444444332  222222222222111 12


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +...    .+++++.++       .+.+.+- ...    +...|...+..++|||||++| ++++.|+.+++|++.
T Consensus       286 ~~~~----~~~~~~~~~-------~i~~~d~-~~~----~~~~~~~~v~~~~~SpDG~~l-~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         286 EFAA----YYQGAPEKG-------VLLKYDV-KTR----KVTEVKNNLTDLRLSADRKTV-MVRKDDGKIYTFPLE  344 (360)
T ss_dssp             SHHH----HHHCCCCCE-------EEEEEET-TTC----CEEEEEEEEEEEEECTTSCEE-EEEETTSCEEEEESS
T ss_pred             CCee----EEEecCCCC-------EEEEEEC-CCC----eEEEecCCcCEEEECCCCCEE-EEEECCCeEEEEECC
Confidence            2211    455555543       3333331 111    223455568999999999999 999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.8e-26  Score=229.04  Aligned_cols=266  Identities=16%  Similarity=0.212  Sum_probs=177.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccccc--ccceEEeeecccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSV--DYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++++  ++++++||.|++|+|||..+........       . ....   ..|...  ........+.+..
T Consensus        13 H~~~I--~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~-------~-~~~~---~~~~~~~~~~~~~~~~~~~~~   77 (393)
T d1sq9a_          13 HDADI--FSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKD-------K-SYSH---FVHKSGLHHVDVLQAIERDAF   77 (393)
T ss_dssp             SSSCE--EEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGG-------G-EEEE---ECCTTCEEEEEEEEEEETTTE
T ss_pred             ccCcc--EEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccc-------e-eEee---eeccCCceEeeeEeeeccCCC
Confidence            56788  544775  4799999999999999976543210000       0 0000   000000  0000111111110


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEE----E-Ee----cCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEe
Q 008041           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK----W-RL----SDCHPGGVSAISFATH-----GSCIYSAGADGMVCEID  145 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~----~-~~----~~~h~~~V~~l~~~~~-----~~~l~s~~~d~~v~iwd  145 (579)
                           ...++++++.||.|++|++......    . ..    ...+...+..++|.++     +.++++++.||++++||
T Consensus        78 -----~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_          78 -----ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             -----EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             -----CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence                 1456889999999999998754321    1 11    1224456888888775     35789999999999999


Q ss_pred             CCCCc------------------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe------ecCC
Q 008041          146 PLTGS------------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------SGHP  199 (579)
Q Consensus       146 ~~~~~------------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~------~~h~  199 (579)
                      +....                  .......+...+.+++|+|++ ++++|+  |.|++||+++++.+..+      .+|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~  231 (393)
T d1sq9a_         153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  231 (393)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccccc
Confidence            74221                  011112344578999999998 788887  89999999999887654      4689


Q ss_pred             CCEEEEEEecCCCEEEEEecCCC---eEEEEEcCCCccccc--------eeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041          200 GAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQSA--------SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       200 ~~v~~l~~s~~~~~l~s~~~~d~---~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                      .+|.+++|+|+|++|++++ .|+   .|++||+.+++....        ........|...+.++.|+     |++++|+
T Consensus       232 ~~V~~l~~spdg~~l~sgs-~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs-----pd~~~l~  305 (393)
T d1sq9a_         232 NSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-----DSGETLC  305 (393)
T ss_dssp             CCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC-----SSSSEEE
T ss_pred             ceEEEcccccccceeeeec-CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC-----CCCCeeE
Confidence            9999999999999999998 576   599999998764310        0011112345567778888     9999999


Q ss_pred             EEEcCCeEEEEEcCCceeecccCCee
Q 008041          269 AISETGVCYIWYGQNIEELRNTKATK  294 (579)
Q Consensus       269 ~~~~dg~i~iwd~~~~~~~~~~~~~~  294 (579)
                      +++.||+|++||+++++.+..++.+.
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             EECCCCEEEEEECCCCCEEEEECCcC
Confidence            99999999999999998887665443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.2e-26  Score=220.98  Aligned_cols=290  Identities=12%  Similarity=0.079  Sum_probs=203.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++..|+  +++|||+|++||+|+.||+|+|||+.++.....+..              ..+| ...+.+++|.+.+    
T Consensus        10 h~d~I~--~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~--------------~~~h-~~~V~~v~f~~~~----   68 (342)
T d1yfqa_          10 PKDYIS--DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--------------SLRY-KHPLLCCNFIDNT----   68 (342)
T ss_dssp             CSSCEE--EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--------------EEEC-SSCEEEEEEEESS----
T ss_pred             CCCCEE--EEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEE--------------ecCC-CCCEEEEEEeCCC----
Confidence            345684  449999999999999999999999876543322210              0012 2356677776653    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE----eec
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRA  157 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~  157 (579)
                          +.++++|+.||.|++|+...+.........+........+.+++..+++++.|+.+++||++.+.....    ...
T Consensus        69 ----~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~  144 (342)
T d1yfqa_          69 ----DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             ----SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             ----CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccc
Confidence                568999999999999999988877666555555666677778888999999999999999865433222    222


Q ss_pred             C--CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE---EeecCCCCEEEEEEe-cCCCEEEEEecCCCeEEEEEc
Q 008041          158 S--TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ---KFSGHPGAVRFMTFS-DNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       158 ~--~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s-~~~~~l~s~~~~d~~i~vwd~  229 (579)
                      +  ........+.+++..+++++  +.|++||+...+...   ....+...+.+..+. +++..+++++ .|+.+.+|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~v~~~  223 (342)
T d1yfqa_         145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFF  223 (342)
T ss_dssp             SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEEC
T ss_pred             ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec-CCCeEEEEEe
Confidence            2  22445677788888888887  899999998765432   233445556666555 4566777776 7999999998


Q ss_pred             CCCccccc---eee-------eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041          230 DGVKKQSA---SCV-------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       230 ~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      ........   ...       .....+...+.++.|+     |++.+|++|+.||.|++||+++++.+..+.        
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~--------  290 (342)
T d1yfqa_         224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIKNFA--------  290 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEEECC--------
T ss_pred             cCCcceeeccccceeeeeeeccCCCcccccceeEEec-----CCccEEEEECCCCEEEEEECCCCcEEEEec--------
Confidence            76532210   000       1112334456778887     999999999999999999998876553221        


Q ss_pred             ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                                      +...+..++|+|+|.++ ++++.|.+.++|..
T Consensus       291 ------------------------------------------------~~~~~~~~~~s~~~~~l-~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         291 ------------------------------------------------KFNEDSVVKIACSDNIL-CLATSDDTFKTNAA  321 (342)
T ss_dssp             ------------------------------------------------CCSSSEEEEEEECSSEE-EEEEECTHHHHCSS
T ss_pred             ------------------------------------------------CCCCCEEEEEEeCCCEE-EEEEcCCcEEEeee
Confidence                                                            11134557789999999 77777888888865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-25  Score=214.85  Aligned_cols=266  Identities=12%  Similarity=0.082  Sum_probs=194.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|+  +++|+|    |++|+.||+|++||..++.     .+|...+.                  ++.+.+      
T Consensus        12 H~~~I~--~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~------------------~~~~~~------   56 (287)
T d1pgua2          12 HNKGIT--ALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIV------------------SLDNSK------   56 (287)
T ss_dssp             CSSCEE--EEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEE------------------EEECCS------
T ss_pred             CCCceE--EEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEE------------------EEEecC------
Confidence            568894  459987    9999999999999987542     34444333                  333322      


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++++.|+.|++|+....+        ....+.++.+++++..++++ .++.+.+|+..+++.+..+..+ ..
T Consensus        57 ----~~~~~s~s~D~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~  122 (287)
T d1pgua2          57 ----AQEYSSISWDDTLKVNGITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SP  122 (287)
T ss_dssp             ----TTCCEEEETTTEEEETTEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SC
T ss_pred             ----CCeEEEEeeccccccccccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-ce
Confidence                4457899999999999976432        23457888999988766655 5667899999999888887643 33


Q ss_pred             eeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                        ..+++|++..+++++   +.+++|++...+....+. .|..++++++|+|++.+|++++ .||.|++||+.+++..  
T Consensus       123 --~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~--  197 (287)
T d1pgua2         123 --GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVK--  197 (287)
T ss_dssp             --EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE--
T ss_pred             --eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeecccccc--
Confidence              356677788887776   579999998776655553 5778999999999999999987 7999999999887532  


Q ss_pred             eeeeeeecCceeEEeEEecCCc-----ccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041          238 SCVLAMEHPAVFMDCRCIDNGG-----VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                        ......+...+.++.|++..     ..+++.++++|+.||+|++||++++...                         
T Consensus       198 --~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-------------------------  250 (287)
T d1pgua2         198 --TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-------------------------  250 (287)
T ss_dssp             --ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-------------------------
T ss_pred             --cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE-------------------------
Confidence              11223344445666665321     1256789999999999999997542210                         


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                   +..+.+|...|.+++|+|++. + +|+|.|+++++|++
T Consensus       251 -----------------------------~~~~~~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 -----------------------------IKALNAHKDGVNNLLWETPST-L-VSSGADACIKRWNV  286 (287)
T ss_dssp             -----------------------------EEETTSSTTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred             -----------------------------EEEeCCCCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence                                         112336888999999999986 5 67888999999987

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.2e-25  Score=214.45  Aligned_cols=270  Identities=14%  Similarity=0.157  Sum_probs=195.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|+ .+|++|+.||+|++|+...+............                .......+.+      
T Consensus        52 H~~~V--~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~------  106 (355)
T d1nexb2          52 HDGGV--WALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST----------------VRCLDIVEYK------  106 (355)
T ss_dssp             CSSCE--EEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC----------------EEEEEEEEET------
T ss_pred             CCCCE--EEEEEcCC-CEEEEEeccccccccccccccccccccccccc----------------cccccccccc------
Confidence            46788  55599986 58999999999999999998887665422211                1111122221      


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEec----------------------CCCCCCEEEEEEccCCCEEEEEeCCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----------------------DCHPGGVSAISFATHGSCIYSAGADG  139 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~----------------------~~h~~~V~~l~~~~~~~~l~s~~~d~  139 (579)
                         ++..+++++.||.|++||+.++.......                      ..|...+..  +.++++.+++++.|+
T Consensus       107 ---~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~  181 (355)
T d1nexb2         107 ---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDN  181 (355)
T ss_dssp             ---TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTS
T ss_pred             ---ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccc
Confidence               16679999999999999998765432211                      123333433  455788999999999


Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  217 (579)
                      .|++||+.+++.+..+.++...+.++.++|+++.+++++  +.|++||.+++..+..+.+|...|.++.|++  ++|+++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~  259 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSA  259 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEE
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeee
Confidence            999999999999999998999999999999999999988  8999999999999999999999999999864  688888


Q ss_pred             ecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc-cCCeeEE
Q 008041          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKIL  296 (579)
Q Consensus       218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~  296 (579)
                      + .||.|++||+.+....     .. .|........+++     +++.++++| .||.|++||+++++.+.. ..+....
T Consensus       260 ~-~dg~i~iwd~~~~~~~-----~~-~~~~~~~~~~~~~-----~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~  326 (355)
T d1nexb2         260 A-ADGSIRGWDANDYSRK-----FS-YHHTNLSAITTFY-----VSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQ  326 (355)
T ss_dssp             C-TTSEEEEEETTTCCEE-----EE-EECTTCCCCCEEE-----ECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred             e-ccccccccccccccee-----cc-cccCCceEEEEEc-----CCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCC
Confidence            7 7999999999876532     22 2444444555665     777777665 589999999999988753 3333333


Q ss_pred             eeeccCCcccccccchhhhhccccce
Q 008041          297 SSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      +.+.. ++++ .    .+++++.||.
T Consensus       327 V~~v~-~~~~-~----~~~~~s~dg~  346 (355)
T d1nexb2         327 IWSVN-FKGK-T----LVAAVEKDGQ  346 (355)
T ss_dssp             EEEEE-EETT-E----EEEEEESSSC
T ss_pred             EEEEE-EcCC-e----EEEEEECCCc
Confidence            33332 3332 1    5666676653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-22  Score=198.09  Aligned_cols=264  Identities=16%  Similarity=0.163  Sum_probs=187.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc--
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK--   79 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--   79 (579)
                      ++++|  .+++|+|+  +|++|+.|+.+++|+................+....+..... ...........|.....+  
T Consensus        56 h~~~V--~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          56 HTGGV--WSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV-VSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             CSSCE--EEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE-EEEETTSEEEEEESSSCCEE
T ss_pred             CCCCE--EEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccc-cccccceeEEEeecccccce
Confidence            35678  55589874  999999999999999998877666554443333222211100 000011111222111100  


Q ss_pred             ----------cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008041           80 ----------KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        80 ----------~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~  149 (579)
                                .........++.++.++.|++||....+.+..+ .+|...+..+.+  ++.++++++.||.|++||++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~  207 (342)
T d2ovrb2         131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG  207 (342)
T ss_dssp             EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred             eeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEE-cCcccccccccC--CCCEEEEEeCCCeEEEeecccc
Confidence                      001113567899999999999999999888666 578877776655  7889999999999999999999


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~~d~~i  224 (579)
                      +.+..+.+|...+.++++++  +++++++  +.|++||....+....+.+   |...+.++.+  +++++++++ .||.|
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s-~Dg~i  282 (342)
T d2ovrb2         208 NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS-DDGTV  282 (342)
T ss_dssp             CEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE-TTSEE
T ss_pred             eeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEc-CCCEE
Confidence            99999999999998887764  5888887  8999999999888877765   4455666655  456888887 79999


Q ss_pred             EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe----EEEEEcCC
Q 008041          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV----CYIWYGQN  283 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----i~iwd~~~  283 (579)
                      ++||+++++............+...+..+.|+     |++.++++|+.||+    |++||++.
T Consensus       283 ~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s-----~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS-----NTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTTCCEEEEEEECTTGGGTCEEEEEEEC-----SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCCCCEEEEEecccCCCCCCCEEEEEEC-----CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999988743110111112345567788887     99999999999985    99999763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.1e-24  Score=212.78  Aligned_cols=204  Identities=16%  Similarity=0.167  Sum_probs=148.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +.++++++.||.|++|+.........+..+......        .......+..+.|.+.....    ...++++++.||
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dg  146 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD--------SDMKKHSFWALKWGASNDRL----LSHRLVATDVKG  146 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC--------TTGGGSCEEEEEEECCC--------CEEEEEEETTS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceee--------eccCCCceEEEEEecCCCcc----cccEEEEEcCCC
Confidence            357889999999999987543321111110000000        00011233345555433211    157789999999


Q ss_pred             eEEEEEccCCe---------------E--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe----
Q 008041           97 DVLALAVSAGQ---------------L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----  155 (579)
Q Consensus        97 ~i~iwd~~~~~---------------~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----  155 (579)
                      .+++|++....               .  .......+...+.+++|+|++ +|++|+.|++|++||+.+++++..+    
T Consensus       147 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~  225 (393)
T d1sq9a_         147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH  225 (393)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             cEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence            99999985321               0  111123456678999999997 8999999999999999999877654    


Q ss_pred             --ecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-------------cCCCCEEEEEEecCCCEEE
Q 008041          156 --RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-------------GHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       156 --~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~-------------~h~~~v~~l~~s~~~~~l~  215 (579)
                        .+|..+|++++|+|+|++|++|+     +.|++||+++++.+.++.             +|.+.|++++|+|++++|+
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence              45788999999999999999997     359999999998877764             7999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcc
Q 008041          216 SSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       216 s~~~~d~~i~vwd~~~~~~  234 (579)
                      +++ .|++|++||+.+++.
T Consensus       306 S~s-~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         306 SAG-WDGKLRFWDVKTKER  323 (393)
T ss_dssp             EEE-TTSEEEEEETTTTEE
T ss_pred             EEC-CCCEEEEEECCCCCE
Confidence            998 799999999999863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.1e-23  Score=200.01  Aligned_cols=249  Identities=10%  Similarity=0.034  Sum_probs=174.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEE--ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCC-C
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWR--LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK-G  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~  161 (579)
                      +.+|++|+.||.|+|||+.++.....  ...+|..+|.+++|+|++ .++++|+.|+.|++|++..+........+.. .
T Consensus        23 ~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~  102 (342)
T d1yfqa_          23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL  102 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS
T ss_pred             CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc
Confidence            78899999999999999986543222  223699999999999875 4799999999999999988877766655444 3


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE----EeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ----KFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~----~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .....+.+++..+++++  +.+++||++++....    ....+  ........+.+++..+++++ .|+.|++|++....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         103 GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-NNSQVQWFRLPLCE  181 (342)
T ss_dssp             CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE-STTEEEEEESSCCT
T ss_pred             ccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec-CCCcEEEEecccCc
Confidence            44555666777887776  899999987543322    22222  23345667788888999887 79999999998876


Q ss_pred             cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      ... .................++     .++..+++++.||.+.+|+..................               
T Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~---------------  240 (342)
T d1yfqa_         182 DDN-GTIEESGLKYQIRDVALLP-----KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC---------------  240 (342)
T ss_dssp             TCC-CEEEECSCSSCEEEEEECS-----GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC---------------
T ss_pred             ccc-eeeeecccccceeeeEeec-----CCCCEEEeecCCCeEEEEEecCCcceeeccccceeee---------------
Confidence            442 1222222333344444454     6778999999999999999765544322211100000               


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008041          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                                               .........|...+.+++|+|+|.+| +||+.|+++++|++.+.
T Consensus       241 -------------------------~~~~~~~~~~~~~v~~l~~sp~~~~l-asg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         241 -------------------------HRLNLKDTNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             -------------------------CCCCTTCCSSCCCEEEEEECTTTCCE-EEEETTSCEEEEETTTT
T ss_pred             -------------------------eeeccCCCcccccceeEEecCCccEE-EEECCCCEEEEEECCCC
Confidence                                     00000123577789999999999999 99999999999998643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.6e-21  Score=179.95  Aligned_cols=232  Identities=13%  Similarity=0.255  Sum_probs=176.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|  ++++|++|+.||.|++|++..+............                    ...+...     
T Consensus        54 H~~~V--~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-----  104 (293)
T d1p22a2          54 HTGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--------------------VLHLRFN-----  104 (293)
T ss_dssp             CSSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--------------------EEEEECC-----
T ss_pred             CCCCE--eeeec--ccceeecccccccccccccccccccccccccccc--------------------ccccccc-----
Confidence            35677  53354  7889999999999999999998877655422211                    1111111     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041           82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                          ...++++..++.+.+|+......  .......|...|..+.+.+  ..+++++.|+.|++||+.+++.+..+.++.
T Consensus       105 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         105 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ----ccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccc
Confidence                56689999999999999987653  2233467888998888754  578899999999999999999999999998


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--
Q 008041          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--  235 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~--  235 (579)
                      ..+..+.++  +..+++++  |.|++||+++.+.+..+.+|...+..  +++++.+|++++ .||.|++||+......  
T Consensus       179 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~  253 (293)
T d1p22a2         179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA-YDGKIKVWDLVAALDPRA  253 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred             cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc-CCCEEEEEECCCCccccc
Confidence            888888776  45777776  89999999999999999999888865  556788999987 7999999998654321  


Q ss_pred             --cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          236 --SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                        ...++..+..+...+..+.|       ++.+|++++.||+|++||
T Consensus       254 ~~~~~~~~~~~~H~~~V~~v~~-------d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         254 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC
T ss_pred             cCCceeeEEecCCCCCEEEEEE-------cCCEEEEEecCCEEEEeC
Confidence              12234455555555555655       457899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=4.8e-21  Score=182.41  Aligned_cols=226  Identities=11%  Similarity=0.089  Sum_probs=165.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.+|  .+++|++++ .+++++.|++|++|+....+.    .                     ....++.+.+       
T Consensus        46 ~~~V--~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~----~---------------------~~~~~~~~~~-------   90 (287)
T d1pgua2          46 SNLI--VSLDNSKAQ-EYSSISWDDTLKVNGITKHEF----G---------------------SQPKVASANN-------   90 (287)
T ss_dssp             CSCE--EEEECCSTT-CCEEEETTTEEEETTEEEEEC----S---------------------SCEEEEEECS-------
T ss_pred             CCCE--EEEEecCCC-eEEEEeecccccccccccccc----c---------------------cceeeeeecc-------
Confidence            4567  455888765 678999999999998753221    0                     0111222222       


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEee-cCCC
Q 008041           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFR-ASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~-~~~~  160 (579)
                         ...+++...++.+.+|+..+++.+..+.  +..++.  ++++++..+++++.|+ .+++|++...+....+. .+..
T Consensus        91 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~  163 (287)
T d1pgua2          91 ---DGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA  163 (287)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred             ---CCceEEEeecccceeeeccceeeeeecc--ccceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCC
Confidence               3445667778889999999998876653  334444  5567788888887765 79999987666555544 4667


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecC----------CCEEEEEecCCCeEEEE
Q 008041          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDN----------GKYVLSSAVGERYIALW  227 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~----------~~~l~s~~~~d~~i~vw  227 (579)
                      .+++++|+|++++|++|+  |.|++||+.+++... .+.+|..+|.+++|+|+          +.++++++ .|++|++|
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~iw  242 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFIY  242 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEEE
T ss_pred             ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec-CCCeEEEE
Confidence            899999999999999998  899999999987654 46789999999999875          45788887 79999999


Q ss_pred             EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  281 (579)
                      |++.....    +.....+...+..+.|+     |++ .|++++.||.|++|++
T Consensus       243 ~~~~~~~~----~~~~~~h~~~V~~v~~~-----~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         243 SVKRPMKI----IKALNAHKDGVNNLLWE-----TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ESSCTTCC----EEETTSSTTCEEEEEEE-----ETT-EEEEEETTSCEEEEEE
T ss_pred             ECCCCCeE----EEEeCCCCCCeEEEEEC-----CCC-EEEEEECCCeEEEEEE
Confidence            99775422    23344445556677776     665 5889999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=8.3e-20  Score=174.48  Aligned_cols=262  Identities=12%  Similarity=0.103  Sum_probs=195.2

Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-EEEECCCeEE
Q 008041           21 AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVL   99 (579)
Q Consensus        21 asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~i~   99 (579)
                      ++++.|++|.|||+.+++.+.++.... .+..+.|+++                           ++++ +++..++.|.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spd---------------------------G~~l~v~~~~~~~i~   57 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPD---------------------------GTKVYVANAHSNDVS   57 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTT---------------------------SSEEEEEEGGGTEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCC---------------------------CCEEEEEECCCCEEE
Confidence            356678999999999999998886432 2233344443                           6655 4566788999


Q ss_pred             EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008041          100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       100 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      +||+.+++.+..+. .| ..+..+.|++++..++ ++..++.+.+|+..+++....+..+ ..+.++.++|+|+.++.+.
T Consensus        58 v~d~~t~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          58 IIDTATNNVIATVP-AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCceeeeee-cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee
Confidence            99999999887763 34 3578999999998755 4557789999999999888887754 5678999999999887655


Q ss_pred             ---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041          179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       179 ---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                         +.+.+|+..+++.+..+..+ ..+..+.++|+++++++++..++.+.+|+....+..     ......... ....+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~  207 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEAAP-SGIAV  207 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSSEE-EEEEE
T ss_pred             ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeee-----ecccccCCc-ceeec
Confidence               68999999999988887744 557889999999999888766678888887776532     233333333 34555


Q ss_pred             cCCcccCCCcEEEEEEc---CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEE
Q 008041          256 DNGGVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV  332 (579)
Q Consensus       256 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  332 (579)
                      +     +++..+++++.   ++.|++||..+++.+...                                          
T Consensus       208 ~-----~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~------------------------------------------  240 (301)
T d1l0qa2         208 N-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITARI------------------------------------------  240 (301)
T ss_dssp             C-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEEE------------------------------------------
T ss_pred             c-----ccccccccccccceeeeeeeeecCCCeEEEEE------------------------------------------
Confidence            5     88888776654   468999998877653211                                          


Q ss_pred             EeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          333 AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       333 ~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                   . +...+..++|||||++|.++++.|+++++|++.+
T Consensus       241 -------------~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         241 -------------P-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             -------------E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             -------------c-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                         0 1124678999999998757888899999999853

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=8.8e-21  Score=191.45  Aligned_cols=308  Identities=14%  Similarity=0.054  Sum_probs=208.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEec---cCccccccccccccccccccccccceEEeeecccccccc
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|||||+++++++.||.|++||+.+++.  ..++.   .+...+....|+++                         
T Consensus        65 ~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD-------------------------  119 (432)
T d1qksa2          65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE-------------------------  119 (432)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT-------------------------
T ss_pred             eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC-------------------------
Confidence            3459999999999999999999999988763  33332   22222333333333                         


Q ss_pred             cCCcE-EEEEECCCeEEEEEccCCeEEEEecC----------CCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCce
Q 008041           84 LGSSL-LVLGTGGGDVLALAVSAGQLKWRLSD----------CHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        84 ~~~~~-l~~~~~~g~i~iwd~~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~  151 (579)
                        +.+ ++++..++.|++||..+++.+..+..          .+......+.++|+|..+ ++...++.|.+||..+++.
T Consensus       120 --G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         120 --DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             --TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             --CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence              555 57788899999999999988755421          244567889999999885 5566789999999988876


Q ss_pred             eeEee-cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec-----CCCCEEEEEEecCCCEEEEEecCCC
Q 008041          152 LGKFR-ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-----HPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       152 ~~~~~-~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                      ..... .+...+..++|+|+|+++++++   +.+.++|.++++.+..+..     |........+...+....+....|+
T Consensus       198 ~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~  277 (432)
T d1qksa2         198 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  277 (432)
T ss_dssp             EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCc
Confidence            55433 2455789999999999888877   6999999999988776642     3344444555555556655554688


Q ss_pred             eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      .+.+|+.......        .+.. .+....+.     |++..+++++.++..++|+..+...-....   ..+     
T Consensus       278 ~v~~~~~~~~~~~--------~~~~-~v~~~~~~-----~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~---~sv-----  335 (432)
T d1qksa2         278 SVALIGTDPEGHP--------DNAW-KILDSFPA-----LGGGSLFIKTHPNSQYLYVDATLNPEAEIS---GSV-----  335 (432)
T ss_dssp             EEEEEECCTTTCT--------TTBT-SEEEEEEC-----SCSCCCCEECCTTCSEEEEECTTCSSHHHH---TCE-----
T ss_pred             eEEeccccccccc--------cccc-EEEEEEEc-----CCCCeEEEEecCCccceeecccCCCCCCee---eEE-----
Confidence            9999987665321        1222 23334454     888999999999999999866543311110   011     


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc----cceeccccee
Q 008041          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ----SLLKSKRGRY  378 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~----s~d~~~~~w~  378 (579)
                      ..++++    .+++++.++.++.++.    ..+       ..+..|...+.+++|||||+++.+|.    ..++.+++|+
T Consensus       336 ~vpDg~----~la~~s~d~~~k~w~~----~~~-------~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         336 AVFDIK----AMTGDGSDPEFKTLPI----AEW-------AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEEEGG----GCCCSSSCCCEEEECH----HHH-------HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EEEech----hhcccccCCceEeccc----ccc-------cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            124555    7777777765444221    000       11234666899999999999884553    2467889998


Q ss_pred             ee
Q 008041          379 VQ  380 (579)
Q Consensus       379 ~~  380 (579)
                      ..
T Consensus       401 ~~  402 (432)
T d1qksa2         401 DK  402 (432)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=9e-21  Score=191.54  Aligned_cols=322  Identities=8%  Similarity=-0.046  Sum_probs=206.0

Q ss_pred             EEccCCC--EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPALD--YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspdg~--~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+++|.+  ++++.+.||+|+|||+.+++++.++..+. .+..+.|+++                           +.++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPD---------------------------Gk~l   76 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSAS---------------------------GRYL   76 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTT---------------------------SCEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEE
Confidence            3556643  45677789999999999999999998654 3566677766                           8889


Q ss_pred             EEEECCCeEEEEEccCCeEEE--Ee--cCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCceeeEeecCCC----
Q 008041           90 VLGTGGGDVLALAVSAGQLKW--RL--SDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTK----  160 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~--~~--~~~h~~~V~~l~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~----  160 (579)
                      ++++.||.|++||+.+++...  ++  ..+|...+.+++|+|||+++++ +..++.+++||..++.+...+..+..    
T Consensus        77 ~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2          77 LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc
Confidence            999999999999999887432  22  2346666778888999998655 45899999999999988877665433    


Q ss_pred             -------CeeEEEEccCCCEEEEEC---CeEEEEECCCCeee-EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          161 -------GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       161 -------~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                             ....+.+++++..++...   +.+.+++......+ ....++...+..+.|+|++++++++...+..+.+|+.
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~  236 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS  236 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred             eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence                   345667777777766654   56777776655432 2344677889999999999999998877888999999


Q ss_pred             CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE--EEcCCeEEEEEcCCc-------eeecccCCeeEEeeec
Q 008041          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNI-------EELRNTKATKILSSSE  300 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~  300 (579)
                      .+++..   ................+.    .+....+.+  .+.|+.+.+|+....       +....++.+...+...
T Consensus       237 ~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v  309 (426)
T d1hzua2         237 KDRRLS---ALVDVGKTPHPGRGANFV----HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  309 (426)
T ss_dssp             TTTEEE---EEEECSSCCCCSCCEEEE----ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE
T ss_pred             ccccEE---EEeccCCcccccceeeee----cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE
Confidence            988643   111111111111112111    022222322  234778888875543       2222222222111111


Q ss_pred             cCCcccccccchhhhh-------ccccceecCCceEEEEEeCCCCCceeE--------EEecCCCCcEEEeecCCcceee
Q 008041          301 DVNSKSQKSATAAIFA-------AKLQDIVKPASVHTFVAYGLLLKPSFQ--------KILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                       .++|+++    .+++       +..++       .+.+.+-.......+        .+..|...|..++|||||+++.
T Consensus       310 -~~sPdg~----~l~v~~~~~~s~~~~~-------tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         310 -KTHPKSS----HLYVDTTFNPDARISQ-------SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             -ECCTTCS----EEEECCTTCSSHHHHT-------CEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             -EcCCCCc----eEEEeecCCCCcccCC-------EEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence             2677777    4442       22222       333333111111111        1223556799999999999764


Q ss_pred             cc----ccceecccceeee
Q 008041          366 MS----QSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s----~s~d~~~~~w~~~  380 (579)
                      +|    ++.++++++|+..
T Consensus       378 vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         378 FSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             EEECCCTTSCCEEEEEETT
T ss_pred             EEEecCCCCCCeEEEEECC
Confidence            54    3568889999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=8.7e-21  Score=191.51  Aligned_cols=302  Identities=8%  Similarity=-0.049  Sum_probs=202.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      -++++.+.||+|.|||..+++++..+..+. .+..+.|+++                           ++++++++.||.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpD---------------------------G~~l~~~s~dg~   84 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVIGRDGK   84 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEEETTSE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEEEEEcCCCC
Confidence            345788899999999999999999998653 4666677776                           889999999999


Q ss_pred             EEEEEccCCeE--EEEec--CCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecC-----------CCC
Q 008041           98 VLALAVSAGQL--KWRLS--DCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRAS-----------TKG  161 (579)
Q Consensus        98 i~iwd~~~~~~--~~~~~--~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~-----------~~~  161 (579)
                      |.+||+.+++.  ..++.  .+|.+.+.+..|+|||+++ ++++.++.|++||..+++.+..+..+           ...
T Consensus        85 v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~  164 (432)
T d1qksa2          85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR  164 (432)
T ss_dssp             EEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred             EEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence            99999988763  22222  3455667777888999985 67888999999999999988877643           345


Q ss_pred             eeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~  237 (579)
                      ...+.++|+|+.++.+.   +.|.+||..+++...... .+...+..+.|+|+|+++++++..++.+.++|....+... 
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~-  243 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA-  243 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE-
Confidence            66789999998876654   899999998876544332 3556788999999999998888778899999998876431 


Q ss_pred             eeeeeee----cCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041          238 SCVLAME----HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       238 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                        .....    +.... ......     ..+...++.. .++.+.+|+..+..... +.......    ++++++.    
T Consensus       244 --~~~~g~~~~~~~~~-~~~~~~-----~~g~~~~~~~lg~~~v~~~~~~~~~~~~-~~~~v~~~----~~~~~g~----  306 (432)
T d1qksa2         244 --IEDTGGQTPHPGRG-ANFVHP-----TFGPVWATSHMGDDSVALIGTDPEGHPD-NAWKILDS----FPALGGG----  306 (432)
T ss_dssp             --EEECSSSSBCCTTC-EEEEET-----TTEEEEEEEBSSSSEEEEEECCTTTCTT-TBTSEEEE----EECSCSC----
T ss_pred             --EeccCccccccCcc-cceecC-----CCCceecccccCCceEEecccccccccc-cccEEEEE----EEcCCCC----
Confidence              11111    11111 122222     3334444433 37899999876553321 11111111    1244444    


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      .++++..++..+     ++...         .+..|.....++++ |||+.+ ++++.|+++++|++.+
T Consensus       307 ~~~~~s~p~~~~-----lw~~~---------~~~~~~~~~~sv~v-pDg~~l-a~~s~d~~~k~w~~~~  359 (432)
T d1qksa2         307 SLFIKTHPNSQY-----LYVDA---------TLNPEAEISGSVAV-FDIKAM-TGDGSDPEFKTLPIAE  359 (432)
T ss_dssp             CCCEECCTTCSE-----EEEEC---------TTCSSHHHHTCEEE-EEGGGC-CCSSSCCCEEEECHHH
T ss_pred             eEEEEecCCccc-----eeecc---------cCCCCCCeeeEEEE-Eechhh-cccccCCceEeccccc
Confidence            455555443222     12111         01123323344554 999999 9999999999999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=7.2e-21  Score=186.94  Aligned_cols=186  Identities=15%  Similarity=0.102  Sum_probs=151.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCee
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      ++++++++ .|.|++||..++..+. +  +|...|.+++|+|||++|++++.+.  .|++||..+++.. .+..|...+.
T Consensus        15 G~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~   89 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVF   89 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEE
T ss_pred             CCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEE
Confidence            56677665 5899999999888753 3  6999999999999999988777554  7999999877654 5667889999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---------CCCeEEEEEcCCC
Q 008041          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGV  232 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---------~d~~i~vwd~~~~  232 (579)
                      +++|+|+|+++++++  +.+++|++.+++....+..|...+.+++|+|+|++|+.+..         .++.+++|++.++
T Consensus        90 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            999999999999988  89999999999999999999999999999999999986542         3456999999887


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      +..      ....+........++     |+|++|++++.++.+.+|+.......
T Consensus       170 ~~~------~~~~~~~~~~~~~~s-----pdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         170 KIF------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             EEE------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             cee------eeccccccccccccc-----CCCCEEEEEeCCCceEccccccccee
Confidence            532      222333334556676     99999999999999999997765543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=8.2e-19  Score=167.44  Aligned_cols=239  Identities=12%  Similarity=0.090  Sum_probs=180.5

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|||||++|+ +++.++.|++||+.+++.+..+..+.. +.                  .+.|.+..        ...
T Consensus        36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~------------------~~~~~~~~--------~~~   88 (301)
T d1l0qa2          36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQ------------------GVAVSPDG--------KQV   88 (301)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EE------------------EEEECTTS--------SEE
T ss_pred             EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cc------------------cccccccc--------ccc
Confidence            459999999875 566789999999999999888764432 12                  23333321        334


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      ++.+..++.+.+|+..+++....+.  +...+.++.|+|+|+.++ ++..++.+.+|+..+++.+..+..+ ..+.++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  165 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV  165 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred             cccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEe
Confidence            5556667789999999998876662  456788999999999865 4556888999999999888887754 46789999


Q ss_pred             ccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeeee
Q 008041          168 SSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       168 ~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +|+++.++++.   +.+.+|+....+....+..+ ..+..+.|+++++.++.++.  .++.|++||+.+++..     ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-----~~  239 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----AR  239 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----EE
T ss_pred             eccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEE-----EE
Confidence            99999888876   68889998888777766644 55678999999998776542  3468999999987633     33


Q ss_pred             eecCceeEEeEEecCCcccCCCcEE-EEEEcCCeEEEEEcCCceeeccc
Q 008041          243 MEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      +..... ...++|+     |||++| ++++.||+|++||+++++.+..+
T Consensus       240 ~~~~~~-~~~va~s-----pdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         240 IPVGPD-PAGIAVT-----PDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             EECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCC-EEEEEEe-----CCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            433333 4567787     999987 46667999999999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=5.9e-20  Score=185.49  Aligned_cols=277  Identities=9%  Similarity=0.019  Sum_probs=181.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--ee---cCCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FR---ASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~---~~~~  160 (579)
                      +.++++.+.+|.|++||+.+++.+.++. .| ..+.+++|+|||+++++++.|++|++||+.+++....  +.   +|.+
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            3456778889999999999999998774 44 4699999999999999999999999999998875433  22   3445


Q ss_pred             CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCE-----------EEEEEecCCCEEEEEecCCCeEEE
Q 008041          161 GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAV-----------RFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v-----------~~l~~s~~~~~l~s~~~~d~~i~v  226 (579)
                      .+.+++|+|||+++++++   +.+.+||..+++++..+.+|...+           ..+.+++++..++......+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            566778889999987765   899999999998887776654443           445555666655555444455555


Q ss_pred             EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeecccCCeeEEeee-ccCCc
Q 008041          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSS-EDVNS  304 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~  304 (579)
                      ++.......   .+....+ ......+.++     |++++++++.. ++.+.+|+..+++.............. ...+.
T Consensus       190 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~-----~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (426)
T d1hzua2         190 VNYKDIDNL---TVTSIGA-APFLADGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV  260 (426)
T ss_dssp             EECSSSSSC---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred             EEeccccce---eeEEecc-CCccEeeeEC-----CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence            555544322   1222233 3334455666     89998888765 668999999988876433211100000 00000


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCCC------CCceeEEEecCCCCcEEEeecCCcceeec------ccccee
Q 008041          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPM------SQSLLK  372 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~------s~s~d~  372 (579)
                      .....   .+.+...     ..++.+.......      .......+.+|...+..++|+|||++|.+      +++.|+
T Consensus       261 ~~~~~---~~~~~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         261 HPKYG---PVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             ETTTE---EEEEEEC-----TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             cCCCC---ceEEecc-----CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence            00100   1111111     1133333332211      12456678899999999999999999933      677899


Q ss_pred             cccceeeee
Q 008041          373 SKRGRYVQN  381 (579)
Q Consensus       373 ~~~~w~~~~  381 (579)
                      ++++|++.+
T Consensus       333 tv~vwd~~t  341 (426)
T d1hzua2         333 SVAVFDLKN  341 (426)
T ss_dssp             CEEEEETTC
T ss_pred             EEEEEECCC
Confidence            999999853

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=7.9e-19  Score=170.30  Aligned_cols=230  Identities=12%  Similarity=0.062  Sum_probs=173.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCc--cccccccccccccccccccccceEEeeecccccccccCCcEE-EEEEC
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG   94 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~   94 (579)
                      +|+++++.|++|+|||+.+++++.++..+.  ..+..+.|+++                           ++++ ++++.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD---------------------------g~~l~v~~~~   54 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG---------------------------GRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT---------------------------SSEEEEEETT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC---------------------------CCEEEEEECC
Confidence            589999999999999999999998886432  23334444444                           6655 55677


Q ss_pred             CCeEEEEEccCCeEEEEecCCCC-----CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCceeeEeec
Q 008041           95 GGDVLALAVSAGQLKWRLSDCHP-----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h~-----~~V~~l~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~  157 (579)
                      ++.|.+||+.+++.+..+. .+.     ..+.+++|+|+++++++++            .+..+.+||..+++....+..
T Consensus        55 ~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_          55 SESLVKIDLVTGETLGRID-LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEE-CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEe-cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence            8999999999999876653 222     2345789999999988775            467899999999998888875


Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEe------------------------------------------
Q 008041          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF------------------------------------------  195 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~------------------------------------------  195 (579)
                       ...+.+++|+|+|++++++++.+.+||..+++....+                                          
T Consensus       134 -~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T d1pbyb_         134 -PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             -cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence             4567899999999999999988888988776544332                                          


Q ss_pred             ------------------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEE
Q 008041          196 ------------------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD  251 (579)
Q Consensus       196 ------------------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  251 (579)
                                              ..+...+..+.++|++.+++..   ++.|++||+.+++..     ..+.+.. ...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~-----~~~~~~~-~~~  283 (337)
T d1pbyb_         213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYY  283 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCC
T ss_pred             eecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc---cccEEEEECCCCcEE-----EEEcCCC-CEE
Confidence                                    1223334455667777776543   578999999998643     3444433 345


Q ss_pred             eEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ++.|+     |||++|++++.||.|.+||.++++.+..+
T Consensus       284 ~~~~s-----~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         284 SVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEEEC-----CCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            67787     99999999999999999999999887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.4e-19  Score=176.52  Aligned_cols=273  Identities=8%  Similarity=-0.001  Sum_probs=184.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CccccccccccccccccccccccceEEeeecccccccccCCcEE-
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-   89 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-   89 (579)
                      +|+++++||++++.|++|.|||+.+++++.+++. +...+..+.|+++                           +.++ 
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD---------------------------G~~l~   55 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD---------------------------NRTAY   55 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT---------------------------SSEEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC---------------------------CCEEE
Confidence            7999999999999999999999999999988763 2333344444444                           5655 


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCC-----CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCcee
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLSDCHP-----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLL  152 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~-----~~V~~l~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~  152 (579)
                      +++..++.|++||+.+++.+..+.....     ..+..++|+|||+++++++            .++.+.+||..+++..
T Consensus        56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            4555788999999999998766532221     2356889999999988764            4778999998887765


Q ss_pred             eEeecC--CCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-----------
Q 008041          153 GKFRAS--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-----------  219 (579)
Q Consensus       153 ~~~~~~--~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----------  219 (579)
                      ..+..+  ...+..+.+++++.+++ .++.+.+|++.+++.+..+..+.. ...+.++|++..++....           
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         136 KPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             CCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eEEEeeeccCceEEEEecCCCEEEE-eCCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeee
Confidence            544332  34566677777776554 457799999999998888765432 334445555443322221           


Q ss_pred             --------------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          220 --------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       220 --------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                                    .+..+.+|+...+...   ......+....... .++     +++.+++... ++.|.+||..+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~-~~~v~v~d~~~~~  283 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTG-LRS-----PKDPNQIYGV-LNRLAKYDLKQRK  283 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEE-EEC-----SSCTTEEEEE-ESEEEEEETTTTE
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEE-EEe-----CCCCEEEEec-CCeEEEEECCCCc
Confidence                          2345666676665432   22222333333333 343     5666666554 4578999887765


Q ss_pred             eecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008041          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                      .+...                                                        .+...+.+++|||||+++ 
T Consensus       284 ~~~~~--------------------------------------------------------~~~~~~~~va~s~DG~~l-  306 (346)
T d1jmxb_         284 LIKAA--------------------------------------------------------NLDHTYYCVAFDKKGDKL-  306 (346)
T ss_dssp             EEEEE--------------------------------------------------------ECSSCCCEEEECSSSSCE-
T ss_pred             EEEEE--------------------------------------------------------cCCCCEEEEEEcCCCCEE-
Confidence            54211                                                        112257789999999999 


Q ss_pred             ccccceecccceeee
Q 008041          366 MSQSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~  380 (579)
                      ++++.|+.+++|++.
T Consensus       307 ~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         307 YLGGTFNDLAVFNPD  321 (346)
T ss_dssp             EEESBSSEEEEEETT
T ss_pred             EEEeCCCcEEEEECc
Confidence            888899999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=9.5e-17  Score=155.34  Aligned_cols=277  Identities=14%  Similarity=0.193  Sum_probs=180.2

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEe--ccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE-CC
Q 008041           19 YFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-GG   95 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~-~~   95 (579)
                      .+++++.|++|+||++.+......+  ..+...+..+.|+++                           +++|++++ .+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD---------------------------G~~L~v~~~~d   58 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD---------------------------KRYLYVGVRPE   58 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT---------------------------SSEEEEEETTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC---------------------------CCEEEEEECCC
Confidence            3467778999999998754322222  234455565666665                           67675555 47


Q ss_pred             CeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeE--eecCCCCeeEEEEccC
Q 008041           96 GDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGK--FRASTKGISCMAVSSD  170 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~  170 (579)
                      +.|.+|++..+......  ...+...+..++|+|||+++++++. ++.|.+|+.........  ...+...+.++.++|+
T Consensus        59 ~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  138 (333)
T d1ri6a_          59 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD  138 (333)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred             CeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeec
Confidence            89999999765422111  1234456778999999999988874 67899998776654433  3445667889999999


Q ss_pred             CCEEEEEC---CeEEEEECCCCeeeEEe------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041          171 GKMLATAA---GQLKTFNCSDHKKMQKF------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       171 g~~l~~~~---~~i~vwd~~~~~~~~~~------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      ++.++.++   ..|.+|+..........      ..+......++|++++.+++......+...+|+........ ....
T Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  217 (333)
T d1ri6a_         139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI-ECVQ  217 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-EEEE
T ss_pred             ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce-eeee
Confidence            99988887   68999998765332211      22345568899999999988877667788898876543221 1111


Q ss_pred             eee------cCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041          242 AME------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       242 ~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      ...      ..........++     ++++++++.. .++.+.+|++..........                       
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~s-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  269 (333)
T d1ri6a_         218 TLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLSKE-----------------------  269 (333)
T ss_dssp             EEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEEEE-----------------------
T ss_pred             eeeeeecCCCccccceeEEEe-----cccCceeeecccCCeEEEEEEcCCCCEEEEE-----------------------
Confidence            111      111222334455     8888776664 47788898765432211000                       


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                   ....+......++|||||++|.++++.++.+++|++.
T Consensus       270 -----------------------------~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         270 -----------------------------GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             -----------------------------EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             -----------------------------EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence                                         0011223456789999999985777778999999874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.1e-16  Score=154.96  Aligned_cols=198  Identities=14%  Similarity=0.149  Sum_probs=146.5

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|||||++++ +++.++.|.+||+.+++.+..+..+.....             ......+.|.+.         +..
T Consensus        38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-------------~~~~~~v~~s~d---------g~~   95 (337)
T d1pbyb_          38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER-------------VKSLFGAALSPD---------GKT   95 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE-------------EECTTCEEECTT---------SSE
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc-------------ccceeeEEEcCC---------CcE
Confidence            459999999874 566799999999999999887765432111             011112333322         344


Q ss_pred             EEEEE------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041           89 LVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  156 (579)
                      ++++.            .++.+.+||..+++....+.  +...+.+++|+|+|+++++++.+  +.+||..+++....+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_          96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred             EEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence            44443            46779999999999876663  45678899999999999988644  6778877654433321


Q ss_pred             ------------------------------------------------------------------cCCCCeeEEEEccC
Q 008041          157 ------------------------------------------------------------------ASTKGISCMAVSSD  170 (579)
Q Consensus       157 ------------------------------------------------------------------~~~~~v~~l~~~p~  170 (579)
                                                                                        .+...+.++.++|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (337)
T d1pbyb_         172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA  251 (337)
T ss_dssp             STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred             cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence                                                                              22334566778888


Q ss_pred             CCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          171 GKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       171 g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      +.+++.+++.|++||+.+++.+..+. +...+.+++|+|||++|++++ .|+.|.+||..+.+..
T Consensus       252 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~-~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         252 KTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGG-ALGDLAAYDAETLEKK  314 (337)
T ss_dssp             SSEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEES-BSSEEEEEETTTCCEE
T ss_pred             ceEEEEccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEe-CCCcEEEEECCCCcEE
Confidence            88888888999999999999998875 667789999999999999887 7999999999987644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=2e-14  Score=141.22  Aligned_cols=194  Identities=9%  Similarity=-0.084  Sum_probs=134.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041            2 GSSNIRDILTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~l~~~fspdg~~lasg~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.+|++.+  +++|||+.++...     .++.|.+||..+++.+.++..+...  .+.|+++                  
T Consensus        19 ~~~p~~~~--a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpD------------------   76 (373)
T d2madh_          19 ADGPTNDE--APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS------------------   76 (373)
T ss_pred             CCCCcccc--ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCC------------------
Confidence            35778556  9999999887642     3467999999999999887643322  3444444                  


Q ss_pred             ccccccccCCcEEEEEE----------CCCeEEEEEccCCeEEEEecCCCCCCE-------EEEEEccCCCEEEEEe--C
Q 008041           77 DRKKKRKLGSSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGV-------SAISFATHGSCIYSAG--A  137 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~h~~~V-------~~l~~~~~~~~l~s~~--~  137 (579)
                               +..++++.          .++.|.+||..+++.+..+. .+....       ..+.|+++++.++...  .
T Consensus        77 ---------G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          77 ---------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             ---------CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEe-cCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence                     55566554          45779999999999876663 233322       4578889998765554  4


Q ss_pred             CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE-EC--CeEEEEECCCCeeeEEeecCC------CCEEEEEEe
Q 008041          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS  208 (579)
Q Consensus       138 d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~-~~--~~i~vwd~~~~~~~~~~~~h~------~~v~~l~~s  208 (579)
                      ++.+.+|+....+.....    ....++.++|+|+.++. .+  +.+.+|+...++.......+.      .....+.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            568889998777655443    34578899999986644 33  899999999887766554322      223445666


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          209 DNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       209 ~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +++.+++. + .++.+.+|+.....
T Consensus       223 ~~~~~~~~-~-~~~~v~~~~~~~~~  245 (373)
T d2madh_         223 KSGRIVWP-V-YSGKILQADISAAG  245 (373)
T ss_pred             CCceEEEe-c-CCceEEEEEcCCCe
Confidence            66655544 4 68899999988765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4e-14  Score=136.42  Aligned_cols=250  Identities=10%  Similarity=0.126  Sum_probs=162.8

Q ss_pred             CcccceEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            4 SNIRDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.|+.+  +|||||++|++++ .|+.|++|++..+....++..+.               ........+.|.+.      
T Consensus        37 ~~v~~l--a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~---------------~~~~~p~~l~~spD------   93 (333)
T d1ri6a_          37 GQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES---------------ALPGSLTHISTDHQ------   93 (333)
T ss_dssp             SCCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE---------------ECSSCCSEEEECTT------
T ss_pred             CCEeEE--EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec---------------ccCCCceEEEEcCC------
Confidence            557555  9999999996655 58999999987654332222110               00112223444443      


Q ss_pred             ccCCcEEEEEEC-CCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeE-----
Q 008041           83 KLGSSLLVLGTG-GGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK-----  154 (579)
Q Consensus        83 ~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~-----  154 (579)
                         ++++++++. ++.|.+|+.......... ...+...+.++.|+|+++++++++ .+..+.+|+.........     
T Consensus        94 ---g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_          94 ---GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             ---SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             ---CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence               677777775 667999998877643222 234667789999999999987776 456799999876533221     


Q ss_pred             -eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe----eeEEee------cCCCCEEEEEEecCCCEEEEEecC
Q 008041          155 -FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK----KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       155 -~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~----~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                       ..........++|++++..++...   +...+|+.....    ......      ........+.+++++++++..+..
T Consensus       171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~  250 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  250 (333)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc
Confidence             112334678999999999887765   677788765432    112221      123456778999999988888777


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEE--cCCcee
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWY--GQNIEE  286 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd--~~~~~~  286 (579)
                      ++.+.+|++.......  ..............+.|+     |||++|++++. ++.|.+|+  .++|+.
T Consensus       251 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~a~s-----pDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         251 ASLITVFSVSEDGSVL--SKEGFQPTETQPRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TTEEEEEEECTTSCCE--EEEEEEECSSSCCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CCeEEEEEEcCCCCEE--EEEEEeCCCCCeeEEEEe-----CCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            8899999987764331  111111222234456777     99999888765 68999995  456543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=2.6e-15  Score=145.60  Aligned_cols=244  Identities=11%  Similarity=-0.034  Sum_probs=163.0

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|||++++ +++.++.|.+||+.+++....+.........            ......+.+.+.         +..
T Consensus        44 ~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~------------~~~~~~v~~s~D---------G~~  102 (346)
T d1jmxb_          44 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV------------GRSMYSFAISPD---------GKE  102 (346)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE------------EECSSCEEECTT---------SSE
T ss_pred             eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccccc------------CCceEEEEEecC---------CCE
Confidence            459999999875 5557899999999999998776533211100            001112222221         444


Q ss_pred             EEEEE------------CCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041           89 LVLGT------------GGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  155 (579)
                      ++++.            .++.+.+|+..+++....+.. .....+..+.+++++..+++   ++.+.+||+.+++.+..+
T Consensus       103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVAL  179 (346)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEE
T ss_pred             EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEE
Confidence            54443            467799999988765432211 12344666777777765544   356899999999888877


Q ss_pred             ecCCCCeeEEEEccCCCEEE--------------------------EEC--CeEEEEECCCCeeeE-EeecCCCCEEEEE
Q 008041          156 RASTKGISCMAVSSDGKMLA--------------------------TAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMT  206 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~--------------------------~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~  206 (579)
                      ..+. ....+.++|++..++                          ++.  +.+.+||..++.... .+..|...+..+.
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (346)
T d1jmxb_         180 PLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL  258 (346)
T ss_dssp             CSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             ecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEE
Confidence            6543 233444555544322                          111  468889988876544 3456888899999


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  286 (579)
                      +++++.++++..  ++.|.+||..+++..     ....... .+..+.|+     |||++|++++.||.|++||.++++.
T Consensus       259 ~~~~~~~~~~~~--~~~v~v~d~~~~~~~-----~~~~~~~-~~~~va~s-----~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         259 RSPKDPNQIYGV--LNRLAKYDLKQRKLI-----KAANLDH-TYYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             ECSSCTTEEEEE--ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EeCCCCEEEEec--CCeEEEEECCCCcEE-----EEEcCCC-CEEEEEEc-----CCCCEEEEEeCCCcEEEEECccCCE
Confidence            999988887765  568999999987643     3333332 34567787     9999999999999999999999998


Q ss_pred             ecccC
Q 008041          287 LRNTK  291 (579)
Q Consensus       287 ~~~~~  291 (579)
                      +..++
T Consensus       326 i~~i~  330 (346)
T d1jmxb_         326 VKNIK  330 (346)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.66  E-value=6.9e-14  Score=137.34  Aligned_cols=245  Identities=9%  Similarity=0.001  Sum_probs=162.5

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++|||||++|++++          .++.|.|||..+++....+..+..........           ...+.|.+.    
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~s~d----  135 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-----------SWMNANTPN----  135 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccC-----------CCcEEEEeC----
Confidence            59999999999875          35789999999999988876544332221111           122344433    


Q ss_pred             ccccCCcEEEE--EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeec
Q 008041           81 KRKLGSSLLVL--GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        81 ~~~~~~~~l~~--~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~  157 (579)
                           +..+++  ...++.+.+|+....+...     +.....++.|+|+|+. +++.+.|+.+.+||...+........
T Consensus       136 -----g~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         136 -----NADLLFFQFAAGPAVGLVVQGGSSDDQ-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             -----CCcEEEEEEcCCCceEEeeccCCeEEE-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence                 333333  3445668889888877643     3345678899999876 56788999999999988877665443


Q ss_pred             CC------CCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE--EeecC----------CCCEEEEEEecCCCEEEEE-
Q 008041          158 ST------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ--KFSGH----------PGAVRFMTFSDNGKYVLSS-  217 (579)
Q Consensus       158 ~~------~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~--~~~~h----------~~~v~~l~~s~~~~~l~s~-  217 (579)
                      +.      .....+.+++++..++.+. +.+++|+..++....  ....+          ......+.+++++..++.. 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             eccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec
Confidence            21      2344566777777776666 889999988765422  22222          1223445666666654432 


Q ss_pred             --------ecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcE--EEEEEcCCeEEEEEcCCceee
Q 008041          218 --------AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY--VLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       218 --------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~  287 (579)
                              ...++.+.+||..+++..     ..+.+... ...+.|+     |||+.  +++++.|+.|++||..+++.+
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~~~~-----~~~~~~~~-~~~~a~s-----pDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGHD-VDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCCcEE-----EEecCCCC-eeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                    124678999999888643     33433333 4456777     99984  467788999999999999988


Q ss_pred             cccC
Q 008041          288 RNTK  291 (579)
Q Consensus       288 ~~~~  291 (579)
                      ..+.
T Consensus       355 ~~~~  358 (373)
T d2madh_         355 QSTV  358 (373)
T ss_pred             EEEC
Confidence            7664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.1e-14  Score=142.10  Aligned_cols=194  Identities=8%  Similarity=-0.055  Sum_probs=133.6

Q ss_pred             CcccceEEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041            4 SNIRDILTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         4 ~~V~~l~~~fspdg~~lasg~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +|+.-.  +.+|||+.++...     .++.|.|||..+++.+.++..+..+  .+.|+++                    
T Consensus         2 ~p~~~~--a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpD--------------------   57 (355)
T d2bbkh_           2 EPRILE--APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADD--------------------   57 (355)
T ss_dssp             CCCBCC--CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT--------------------
T ss_pred             CCcEeE--eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCC--------------------
Confidence            455333  7799999887653     3567999999999998877543221  2334443                    


Q ss_pred             ccccccCCcEEEEE----------ECCCeEEEEEccCCeEEEEecC--CC----CCCEEEEEEccCCCEEEEEe--CCCc
Q 008041           79 KKKRKLGSSLLVLG----------TGGGDVLALAVSAGQLKWRLSD--CH----PGGVSAISFATHGSCIYSAG--ADGM  140 (579)
Q Consensus        79 ~~~~~~~~~~l~~~----------~~~g~i~iwd~~~~~~~~~~~~--~h----~~~V~~l~~~~~~~~l~s~~--~d~~  140 (579)
                             ++.|++.          ..+|.|.+||..+++.+..+..  .+    ......+.|+|+|++++.++  .+..
T Consensus        58 -------g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          58 -------GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             -------SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             -------CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence                   4445443          4578899999999988765521  11    12345689999999987764  5678


Q ss_pred             EEEEeCCCCceeeEeecCCC-------CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecC
Q 008041          141 VCEIDPLTGSLLGKFRASTK-------GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN  210 (579)
Q Consensus       141 v~iwd~~~~~~~~~~~~~~~-------~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~  210 (579)
                      +.+||..+++.+..+..+..       ....+.+++||+.++...   +.+.+++.....     ..+...+....+.++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  205 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQK  205 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETT
T ss_pred             eeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCC
Confidence            99999999988887765432       334567778877776654   566666655443     234444566678888


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCcc
Q 008041          211 GKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      +..++.++ .++.+++|++..+..
T Consensus       206 ~~~~~~~~-~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         206 AGRLVWPT-YTGKIHQIDLSSGDA  228 (355)
T ss_dssp             TTEEEEEB-TTSEEEEEECTTSSC
T ss_pred             CCeEEEec-CCCeEEEEecCCCcE
Confidence            88888876 799999999988753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=2.1e-13  Score=133.44  Aligned_cols=301  Identities=9%  Similarity=0.026  Sum_probs=181.1

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccc-----ccc---ccc--ccccceEEeeecccccccccCCcEE
Q 008041           20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR-----LER---EHL--SVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        20 lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~--~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +++|+.+|.|+||++.+++.+.++.-...... ..|..+     +..   ...  ......+......++      ++++
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~-~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD------Gr~l   86 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSA-TGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD------GKYL   86 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTT-TCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE------EEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCC-EEEEECCccceEEecccccccCcccCCCcceecccCC------CCEE
Confidence            55777899999999999999888742111000 001000     000   000  000011111111122      6667


Q ss_pred             EEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE--EEEEeCCC-----------------cEEEEeCCCC
Q 008041           90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--IYSAGADG-----------------MVCEIDPLTG  149 (579)
Q Consensus        90 ~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~~~d~-----------------~v~iwd~~~~  149 (579)
                      ++.. .++.|.++|+.+++....+.-.+...+.+++|+|+|+.  ++..+.+.                 .+..+|..+.
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            6665 56679999999999876654457788999999999985  43333332                 2355788887


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC-------------------------------------------CeEEEEEC
Q 008041          150 SLLGKFRASTKGISCMAVSSDGKMLATAA-------------------------------------------GQLKTFNC  186 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-------------------------------------------~~i~vwd~  186 (579)
                      +....+... +.+..++++|+|+++++++                                           +.+.+++.
T Consensus       167 ~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~  245 (441)
T d1qnia2         167 DVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR  245 (441)
T ss_dssp             SEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             eeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence            777766643 3568899999999887664                                           12333434


Q ss_pred             CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccceeeeeeecCceeEEeEEecCCcc
Q 008041          187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSASCVLAMEHPAVFMDCRCIDNGGV  260 (579)
Q Consensus       187 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                      ...+.+..++...+ ...+.++|||+++++++..+++|.+||+.+.+.      ....++........-.....|+    
T Consensus       246 ~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd----  320 (441)
T d1qnia2         246 GESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD----  320 (441)
T ss_dssp             SSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC----
T ss_pred             cCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec----
Confidence            44455666665554 478999999999988888899999999876331      1011221111111111223455    


Q ss_pred             cCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCc
Q 008041          261 DDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKP  340 (579)
Q Consensus       261 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~  340 (579)
                       ++|..+.+...|.+|..|++......  ..                           .+.                ...
T Consensus       321 -~~g~~yts~~~ds~v~kw~~~~~~~~--~~---------------------------~~~----------------~~~  354 (441)
T d1qnia2         321 -GRGNAYTTLFIDSQVCKWNIADAIKH--YN---------------------------GDR----------------VNY  354 (441)
T ss_dssp             -SSSEEEEEETTTTEEEEEEHHHHHHH--HT---------------------------TCC----------------CCC
T ss_pred             -CCceEEEcccccceEEEeccchhhhh--hc---------------------------cCC----------------Cce
Confidence             88888888888999999997432111  00                           000                000


Q ss_pred             eeEEE-----ecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041          341 SFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       341 ~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      ..+++     .+|...+...+++|||+|| +|++.-..=|+++++
T Consensus       355 v~~~~~v~y~~GH~~~~~~~t~~pdGk~l-~s~~k~s~dr~~~~g  398 (441)
T d1qnia2         355 IRQKLDVQYQPGHNHASLTESRDADGKWL-VVLSKFSKDRFLPVG  398 (441)
T ss_dssp             EEEEEECSSCEEEEEETTTTSTTCCCCEE-EEEESCCGGGSCCCS
T ss_pred             eEeccccccCCCCCccccccccCCCCcEE-EecCccccccCcCCC
Confidence            11111     3677778888899999999 999443333555553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=2.5e-12  Score=124.89  Aligned_cols=246  Identities=11%  Similarity=0.016  Sum_probs=150.7

Q ss_pred             EEEEccCCCEEEEE----------eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041           10 LTSFSPALDYFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus        10 ~~~fspdg~~lasg----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|||||++|++.          +.|+.|++||..+++....+..+.......           ......+.|.+.   
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~d---  116 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV-----------GTYPWMTSLTPD---  116 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB-----------SCCGGGEEECTT---
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec-----------CCCCceEEEecC---
Confidence            34999999988764          347899999999999988775433221111           111123344432   


Q ss_pred             cccccCCcEEEEEE--CCCeEEEEEccCCeEEEEecCCCC------CCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCc
Q 008041           80 KKRKLGSSLLVLGT--GGGDVLALAVSAGQLKWRLSDCHP------GGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGS  150 (579)
Q Consensus        80 ~~~~~~~~~l~~~~--~~g~i~iwd~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~  150 (579)
                            +..++++.  .+..+.+|+..+++.+..+.....      .....+.+++++..++... .++.+.+++.....
T Consensus       117 ------g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~  190 (355)
T d2bbkh_         117 ------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  190 (355)
T ss_dssp             ------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             ------CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence                  55566665  345699999999998766532111      1122344455554433322 23334444433222


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee--EEeecCC----------CCEEEEEEecCCCEEEE
Q 008041          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSGHP----------GAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~--~~~~~h~----------~~v~~l~~s~~~~~l~s  216 (579)
                      .     .+...+....+.+++..++.++  +.+++|+...++..  .....+.          .....+++++++..++.
T Consensus       191 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         191 P-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             C-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             c-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence            1     1233455667777777777766  89999999887542  2222221          23345889999998776


Q ss_pred             EecC---------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc--EEEEEEcCCeEEEEEcCCce
Q 008041          217 SAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       217 ~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  285 (579)
                      ....         .+.|.+||..+++..     ..+... .....+.|+     |||+  ++++++.|+.|++||.++++
T Consensus       266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         266 LVDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMG-HEIDSINVS-----QDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EeccCCceeecCCCCeEEEEeCCCCcEE-----EEecCC-CCEEEEEEc-----CCCCeEEEEEECCCCEEEEEECCCCC
Confidence            5432         147999999988643     233332 234566777     9997  34566679999999999999


Q ss_pred             eecccC
Q 008041          286 ELRNTK  291 (579)
Q Consensus       286 ~~~~~~  291 (579)
                      .++.++
T Consensus       335 ~~~~i~  340 (355)
T d2bbkh_         335 ELRSVN  340 (355)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=2.2e-12  Score=130.93  Aligned_cols=143  Identities=10%  Similarity=0.052  Sum_probs=101.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+.|.+|++++..  .|+.+.+||..+++....+..+...            .+ ...+.+..|.|.         +..
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~------------~~-~~~i~~~~~SpD---------g~~   75 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFD------------EF-GHSINDYSISPD---------GQF   75 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTT------------TS-SSCCCEEEECTT---------SSE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhh------------hc-cCccceeEECCC---------CCE
Confidence            34589999988764  4788999999999987655433210            00 112233334332         667


Q ss_pred             EEEEEC---------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-
Q 008041           89 LVLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-  158 (579)
Q Consensus        89 l~~~~~---------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-  158 (579)
                      |+.++.         .+.+.+||+.+++..  .+..|...+..+.|+|||+.++.. .++.+++|+..+++..+....+ 
T Consensus        76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~--~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~  152 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI--TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (470)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEEC--CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             EEEEECCcceeeeccCceEEEEECCCCccc--ccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccC
Confidence            777653         567999999999864  346788999999999999999886 5778999999888766543221 


Q ss_pred             -----------------CCCeeEEEEccCCCEEEEEC
Q 008041          159 -----------------TKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       159 -----------------~~~v~~l~~~p~g~~l~~~~  178 (579)
                                       .+....+.|+|||+.|+...
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence                             12345688999999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=6.2e-12  Score=123.07  Aligned_cols=246  Identities=9%  Similarity=0.014  Sum_probs=158.6

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++|+|||++|++.+          .|+.|.+||..+++....+..+.......           ......+.|.+.    
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~-----------g~~p~~~a~SpD----  134 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV-----------GPRVHIIGNCAS----  134 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB-----------SCCTTSEEECTT----
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc-----------cCCccceEECCC----
Confidence            48999999988754          36789999999999988876433211110           111123444443    


Q ss_pred             ccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-----
Q 008041           81 KRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-----  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-----  154 (579)
                           +++++++. .++.+.+||+.+++....+.......+    +......++..+.||.+..|++........     
T Consensus       135 -----Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         135 -----SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             -----SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             -----CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence                 66677766 568899999999998766633222211    112344566777888888888765433222     


Q ss_pred             -eecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEe--ecC----------CCCEEEEEEecCCCEEEEEecCC
Q 008041          155 -FRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF--SGH----------PGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       155 -~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~--~~h----------~~~v~~l~~s~~~~~l~s~~~~d  221 (579)
                       +..+...+....+.+++..+.+.++.+++++...+......  ..+          ......+++++++..++.....+
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence             22334456678889998888877788888888766543221  111          11234578899988776653222


Q ss_pred             --------CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-E-EEEEEcCCeEEEEEcCCceeecccC
Q 008041          222 --------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-Y-VLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       222 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                              ..|.+||..+++..     ..+... .....+.|+     |||+ + ++++..|+.|++||..+++.++.++
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTS-----GPISNG-HDSDAIIAA-----QDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEE-----ECCEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CceeecCCceEEEEECCCCcEe-----EEecCC-CceeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence                    35899999988643     233322 334556777     9987 3 4555678999999999999887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=2e-11  Score=119.29  Aligned_cols=265  Identities=9%  Similarity=-0.067  Sum_probs=150.7

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCceeeEeecCCC-----
Q 008041           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK-----  160 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~-----  160 (579)
                      ..|.+||..+++.+..+. .+..+  .++|+|||+++++.+          .|+.|.+||..+++.+..+..+..     
T Consensus        46 ~~~~~~d~~~~~~~~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEEETTTTEEEEEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             ceEEEEeCCCCcEEEEEe-CCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            348888999999887664 34444  588999999988764          377899999999999888764432     


Q ss_pred             --CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          161 --GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       161 --~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                        ....++|+|||++++++.   +.+.+||+.+++.+..+..+.....   +......++..+ .|+.+.+|++......
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~-~Dg~~~~~~~~~~~~~  198 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGS-CPASLAASDLAAAPAA  198 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCC-CTTSCEEEECCSSCCC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEc-CCCCEEEEEecCCcee
Confidence              234689999999998775   8999999999999888876554321   112233444444 6888888887665432


Q ss_pred             cceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc--CCee-------EEee--eccCC
Q 008041          236 SASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT--KATK-------ILSS--SEDVN  303 (579)
Q Consensus       236 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~-------~~~~--~~~~~  303 (579)
                      ..... ..............+.     +++..+.+  ..+.+++++..........  ....       ....  ....+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~  271 (368)
T d1mdah_         199 AGIVGAQCTGAQNCSSQAAQAN-----YPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCEEET-----TTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             eeeeecccccccccceeecccc-----cCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEE
Confidence            10000 0011112222233443     55555443  3456666665544332111  0000       0000  00001


Q ss_pred             cccccccchhhhhcccc--ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccceeee
Q 008041          304 SKSQKSATAAIFAAKLQ--DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~  380 (579)
                      ++++.    .++....+  .........+++.+.. .......+. +...+..++|||||+ ++.++++.|+++++|+..
T Consensus       272 ~~~~~----~~~v~~~~~~~~~~~~~~~v~v~D~~-t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         272 LKNTD----GIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             ETTTT----EEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             cCCCC----EEEEEecCCCceeecCCceEEEEECC-CCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            22222    22211111  1111112334444422 222222322 234678899999997 344777889999999975

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=3e-08  Score=92.05  Aligned_cols=241  Identities=14%  Similarity=0.162  Sum_probs=154.1

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++++|+|+.+++-...++|++||.. |+.+..+...... ....+.+           ..+.+....        +..++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-~~~~~~p-----------~~~~~~~~~--------~~~~~   86 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-DSQLLYP-----------NRVAVVRNS--------GDIIV   86 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-TTCBSSE-----------EEEEEETTT--------TEEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-ccccccc-----------ccccccccc--------cccce
Confidence            4899999988776677899999964 7777766322111 1011111           111111111        23333


Q ss_pred             EEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CCCCeeEEEE
Q 008041           91 LGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAV  167 (579)
Q Consensus        91 ~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~l~~  167 (579)
                      +.. .++.|..++. .++....+.........++++.++|..+++....+.+.+++. +++.+..+..  +......+++
T Consensus        87 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          87 TERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             EECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEE
T ss_pred             eccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeee
Confidence            332 3345777765 455544554455667889999999998888777888999984 5777776643  3457888999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      .++|+++++..  +.|++||. +++.+.++.  ++......|++.++|+.+++-...++.|.+|+.. ++..   ..+..
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~---~~~~~  239 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI---SALES  239 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE---EEEEE
T ss_pred             ccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE---EEEeC
Confidence            99998877776  79999996 566676763  3455678999999999777654345579999854 3321   11111


Q ss_pred             ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  285 (579)
                      .........+++.     |+|.+ ++++.+++|++|..+...
T Consensus       240 ~~~~~~p~~vav~-----~dG~l-~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         240 KVKHAQCFDVALM-----DDGSV-VLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSCCSCEEEEEEE-----TTTEE-EEEETTTEEEEEECSCCC
T ss_pred             CCCCCCEeEEEEe-----CCCcE-EEEeCCCeEEEEEeeeec
Confidence            1212223455566     88875 455678999999876653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=1.9e-08  Score=97.44  Aligned_cols=162  Identities=14%  Similarity=0.190  Sum_probs=101.7

Q ss_pred             CCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCC-Ccee--eEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008041          117 PGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS  187 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~-~~~~--~~~~--~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~  187 (579)
                      ...+.++.|+|+|+++++++. ...|.+|+... +...  ....  ........++|+|+|+++.+..   ++|.+|+..
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            345889999999999888764 45788887543 3322  1222  2345789999999999887765   799999987


Q ss_pred             CCeeeE--E---ee--------------cCCCCEEEEEEecCCCEEEEEecCCC-----eEEEEEcCCCcccc-ceeeee
Q 008041          188 DHKKMQ--K---FS--------------GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQS-ASCVLA  242 (579)
Q Consensus       188 ~~~~~~--~---~~--------------~h~~~v~~l~~s~~~~~l~s~~~~d~-----~i~vwd~~~~~~~~-~~~~~~  242 (579)
                      .++...  .   ..              .+......+.++|||++++++...+.     .|..|++....... ......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654321  1   11              11123567899999999988754333     37777776543221 001111


Q ss_pred             eecCceeEEeEEecCCcccC-CCcEEEEEE-cCCeEEEEEcCC
Q 008041          243 MEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~  283 (579)
                      ..........+.++     | +|++|+++. .++.|.+|+...
T Consensus       304 ~~~~G~~p~~i~~~-----p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         304 TPTSGGHSNAVSPC-----PWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSCCTTCCCEEEC-----TTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcCCCCccEEEec-----CCCCCEEEEEeCCCCeEEEEEEeC
Confidence            11112223345555     6 789887775 478999997643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.16  E-value=1.7e-09  Score=105.36  Aligned_cols=186  Identities=13%  Similarity=0.073  Sum_probs=125.3

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecC-----------------------------CCCCCEEEEEEccCCCEEEEEe-CC
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSD-----------------------------CHPGGVSAISFATHGSCIYSAG-AD  138 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~-----------------------------~h~~~V~~l~~~~~~~~l~s~~-~d  138 (579)
                      +++++.+|+|.+|++.+++.+.++.-                             .|........+.|||++++... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56667799999999999988766521                             1223345555678999986664 78


Q ss_pred             CcEEEEeCCCCceeeEeec-CCCCeeEEEEccCCCEE--EEEC-Ce------------------EEEEECCCCeeeEEee
Q 008041          139 GMVCEIDPLTGSLLGKFRA-STKGISCMAVSSDGKML--ATAA-GQ------------------LKTFNCSDHKKMQKFS  196 (579)
Q Consensus       139 ~~v~iwd~~~~~~~~~~~~-~~~~v~~l~~~p~g~~l--~~~~-~~------------------i~vwd~~~~~~~~~~~  196 (579)
                      ++|.++|+.+++....+.. ....+..++|+|+|+..  +..+ ..                  +..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999999998887653 45688999999999953  3332 33                  3558888888777776


Q ss_pred             cCCCCEEEEEEecCCCEEEEEecCCCe----------------------------------------EEEEEcCCCcccc
Q 008041          197 GHPGAVRFMTFSDNGKYVLSSAVGERY----------------------------------------IALWRTDGVKKQS  236 (579)
Q Consensus       197 ~h~~~v~~l~~s~~~~~l~s~~~~d~~----------------------------------------i~vwd~~~~~~~~  236 (579)
                      .. +....+.|+|+|+++++++.....                                        +.+++....+   
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~---  249 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE---  249 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS---
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc---
Confidence            43 456889999999999887643222                                        1222111111   


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCcee
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEE  286 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~  286 (579)
                        .+..+..+.. ...+.++     |||++++++ ..+++|.+||+.+.+.
T Consensus       250 --v~~~IPvgks-PhGv~vS-----PDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         250 --FTRYIPVPKN-PHGLNTS-----PDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             --SEEEECCBSS-CCCEEEC-----TTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             --eEEEEeCCCC-ccCceEC-----CCCCEEEEeCCcCCcEEEEEeehhhh
Confidence              1222222222 2345555     999988665 5599999999876544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=5.6e-09  Score=101.24  Aligned_cols=282  Identities=10%  Similarity=0.010  Sum_probs=154.8

Q ss_pred             EEEEEEC--CCeEEEE--EccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEe-ecCC
Q 008041           88 LLVLGTG--GGDVLAL--AVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKF-RAST  159 (579)
Q Consensus        88 ~l~~~~~--~g~i~iw--d~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~-~~~~  159 (579)
                      .|++|+.  .+.|+.+  |..++++  +.........++..++|+|+++.++++.. +.+..|.+.. +...... ....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            3677864  4567554  4555554  22222234556778999999999988765 5577776653 3222221 1223


Q ss_pred             CCeeEEEEccCCCE--EEEEC---CeEEEEECCC-Cee---------------eEEe-ecCCCCEEEEEEecCCCEEEEE
Q 008041          160 KGISCMAVSSDGKM--LATAA---GQLKTFNCSD-HKK---------------MQKF-SGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       160 ~~v~~l~~~p~g~~--l~~~~---~~i~vwd~~~-~~~---------------~~~~-~~h~~~v~~l~~s~~~~~l~s~  217 (579)
                      .....++++|+++.  ++++.   +++..+.+.. +..               .... ......+.++.|+|||++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            45677888999984  44433   5666554422 111               1111 1122347899999999999988


Q ss_pred             ecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeecccCCeeE-
Q 008041          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKI-  295 (579)
Q Consensus       218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-  295 (579)
                      ......|.+|+....................-...+.|+     |+++++.+..+ +++|.+|+....+.......... 
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-----pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-----PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-----CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            766778999987654322111111111223445667777     99999877775 88999999876543211100000 


Q ss_pred             -----------------EeeeccCCcccccccchhhhhcccc-ceecCCceEEEEEeCCCCCceeEEE-----ecCCCCc
Q 008041          296 -----------------LSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGLLLKPSFQKI-----LVNSGED  352 (579)
Q Consensus       296 -----------------~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-----~~h~~~v  352 (579)
                                       .......++++++    +++++... ....  .+.+....-.......+..     .......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~----~lyvsnr~~~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p  311 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGK----YMFASSRANKFEL--QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS  311 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSS----EEEEEEEESSTTS--CCEEEEEEECTTSCEEEEEEEEECSSCCTTC
T ss_pred             cccccccccccccccccCCccceEECCCCC----EEEEEcccCCCcc--ceEEEEEEecCCCceeeEeEeeEEEcCCCCc
Confidence                             0011112466666    45444321 1111  1112111111111111111     1122345


Q ss_pred             EEEeecC-Ccceeeccccceecccceeeee
Q 008041          353 INLNCSQ-DGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       353 ~~~~~s~-dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      ..++++| +|++|.++...++++.+|++..
T Consensus       312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             cEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            6788998 8998867778899999998753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=8.2e-10  Score=111.47  Aligned_cols=150  Identities=14%  Similarity=0.074  Sum_probs=111.5

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeC------
Q 008041           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGA------  137 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~------  137 (579)
                      ...+.|.+.         +.++  -..+|.+.+||+.+++....+    +..|...|.++.|+|||++|+.++.      
T Consensus        19 ~~~~~W~~d---------~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r   87 (470)
T d2bgra1          19 LYSLRWISD---------HEYL--YKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (470)
T ss_dssp             CCCCEECSS---------SEEE--EESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             ccCCEeCCC---------CEEE--EEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceee
Confidence            345667763         3333  356888999999999875332    2345678999999999999988753      


Q ss_pred             ---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecC---------------
Q 008041          138 ---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH---------------  198 (579)
Q Consensus       138 ---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h---------------  198 (579)
                         ++.+.+||+.+++. ..+..+...+..+.|+|||+.+|... +.+++|+..+++..+....+               
T Consensus        88 ~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~  166 (470)
T d2bgra1          88 HSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (470)
T ss_dssp             SCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeee
Confidence               56789999988764 45777888999999999999999987 89999999988765433211               


Q ss_pred             ---CCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041          199 ---PGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       199 ---~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~  229 (579)
                         .+....+.|+|||++|+....++..+..|.+
T Consensus       167 ~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence               2334568899999999998754444554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=5.9e-08  Score=88.99  Aligned_cols=231  Identities=9%  Similarity=-0.037  Sum_probs=131.8

Q ss_pred             EEEEccCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fspdg~~lasg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++++++|+..++. +..+.+..++................+                  ..+++.+.         +.+
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p------------------~gvav~~~---------g~i   70 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQP------------------QGLAVDGA---------GTV   70 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSC------------------CCEEECTT---------CCE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCc------------------eEEEEcCC---------CCE
Confidence            44899999965554 455777776654333222111100111                  12222221         444


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++....+.+++++..++..+..  ........++++.++|+++++-..+..+..++...................++++
T Consensus        71 ~v~d~~~~~i~~~~~~~~~~~~~--~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          71 YVTDFNNRVVTLAAGSNNQTVLP--FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             EEEETTTEEEEECTTCSCCEECC--CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred             EEeeeeeceeeeeeeccceeeee--eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence            44444444455554444443322  2233568999999999887776677778888765433222211223456889999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+|+++++..  +.|..+|.+.................+++.++|+.+++.. ..+.|..++.......    .... ..
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~~----~~~~-~~  222 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST----VLPF-TG  222 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCCE----ECCC-CS
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeEE----EEcc-CC
Confidence            9999877765  7899999776543332234455678999999998766654 6788888876654321    1111 11


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  280 (579)
                      -.....++++     ++|..+++-..+++|+.++
T Consensus       223 ~~~P~~i~~d-----~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         223 LNTPLAVAVD-----SDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCCEEEEEEC-----TTCCEEEEEGGGTEEEEEC
T ss_pred             CCCeEEEEEe-----CCCCEEEEECCCCEEEEEe
Confidence            1223456665     7887766656677776554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=2.7e-07  Score=86.55  Aligned_cols=225  Identities=10%  Similarity=0.034  Sum_probs=138.7

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++++|||+++++...+++|..|+... .... +......+.                  ++++.+.         ++++
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~-~~~~~~~~~------------------gla~~~d---------G~l~   82 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDG-NQQI-HATVEGKVS------------------GLAFTSN---------GDLV   82 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTC-CEEE-EEECSSEEE------------------EEEECTT---------SCEE
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCC-CEEE-EEcCCCCcc------------------eEEEcCC---------CCeE
Confidence            358999999999988899888888653 3322 222222223                  3333321         7778


Q ss_pred             EEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--------C-
Q 008041           90 VLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--------S-  158 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------~-  158 (579)
                      ++...++.+..|+.....  ..............++.+.++|+++++.+.++.+..+|...+........        + 
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (302)
T d2p4oa1          83 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  162 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC
Confidence            888888888888876432  22122223456689999999999888888899999999876643322211        1 


Q ss_pred             -CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee---EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          159 -TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       159 -~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~---~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                       ......+.++  +..+..+.   +.|+.++.......   ..+. +......++|.++|+++++.. .++.|..++...
T Consensus       163 ~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p~G  238 (302)
T d2p4oa1         163 VFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPDR  238 (302)
T ss_dssp             CSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB-TTCCEEEECTTC
T ss_pred             ccccccccccc--CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEc-CCCcEEEECCCC
Confidence             1234556655  34444443   78888887754322   1222 233456799999999776654 688899988765


Q ss_pred             CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  273 (579)
                      ...    .+............++|....  +|++.|++++..
T Consensus       239 ~~~----~~~~~~~~~~~pt~vafg~~~--~D~~~Lyvtt~~  274 (302)
T d2p4oa1         239 STT----IIAQAEQGVIGSTAVAFGQTE--GDCTAIYVVTNG  274 (302)
T ss_dssp             CEE----EEECGGGTCTTEEEEEECCST--TTTTEEEEEECT
T ss_pred             CEE----EEEecCCCCCCceEEEEcCCC--CCCCEEEEECCC
Confidence            421    122223333345566773211  678888776654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.86  E-value=1.6e-06  Score=81.39  Aligned_cols=235  Identities=14%  Similarity=0.141  Sum_probs=141.3

Q ss_pred             EEEccCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041           11 TSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus        11 ~~fspdg~~lasg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|+|+|+++++...       +|+|..||..++.............              .....-+.+.+.       
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~--------------~g~P~Gl~~~~d-------   81 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGY--------------GGIPAGCQCDRD-------   81 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTE--------------ECCEEEEEECSS-------
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccC--------------CCcceeEEEeCC-------
Confidence            379999997765432       4678889988876544322111000              000112223221       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC----CEEEEEEccCCCEEEEEeC---------------CCcEEEE
Q 008041           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG----GVSAISFATHGSCIYSAGA---------------DGMVCEI  144 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~----~V~~l~~~~~~~~l~s~~~---------------d~~v~iw  144 (579)
                        ++.++++...+.|..++...+.... ......+    ..+++++.++|+..++-..               +|.|+.+
T Consensus        82 --g~~l~vad~~~~i~~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          82 --ANQLFVADMRLGLLVVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             --SSEEEEEETTTEEEEEETTSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             --CCEEEEEECCCeEEEEeCCCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence              6677888877789999987665431 1111111    3578999999987766422               2345555


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCC----EEEEEC---CeEEEEECCCCeee------EEeec-CCCCEEEEEEecC
Q 008041          145 DPLTGSLLGKFRASTKGISCMAVSSDGK----MLATAA---GQLKTFNCSDHKKM------QKFSG-HPGAVRFMTFSDN  210 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~----~l~~~~---~~i~vwd~~~~~~~------~~~~~-h~~~v~~l~~s~~  210 (579)
                      +. .++...... .-...+.++|+|+++    .|.++.   +.|+.||+.....+      ..+.+ +......+++..+
T Consensus       159 ~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         159 TT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             CT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             ee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            53 344333322 233457899999875    454443   78988887643222      12222 2233568999999


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEE-EEEEcCCeEEEEEcC
Q 008041          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQ  282 (579)
Q Consensus       211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~  282 (579)
                      |+..++.. ..+.|.+||.+.+...     ..+..+......++|.     |+++.| ++.+.+|+|..++++
T Consensus       237 GnlyVa~~-~~g~I~~~dp~~g~~~-----~~i~~p~~~~t~~afg-----~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         237 NNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECS
T ss_pred             CcEEEEEc-CCCEEEEEeCCCCEEE-----EEEECCCCCEEEEEEe-----CCCCEEEEEECCCCcEEEEECC
Confidence            99777665 5789999998876533     2333444455677787     888755 445567889888864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.5e-07  Score=93.90  Aligned_cols=198  Identities=8%  Similarity=0.032  Sum_probs=119.1

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|.+++.++.. ..+|.|.+||+.+++....+......               ........|.|.         +..++.
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~SpD---------~~~vl~   77 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REYALF   77 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcccc---------------ccccceeEECCC---------CCeEEE
Confidence            67888877643 45789999999988764444321110               011112222221         555666


Q ss_pred             EE---------CCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec-CCC
Q 008041           92 GT---------GGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK  160 (579)
Q Consensus        92 ~~---------~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~  160 (579)
                      .+         ..+.+.+||+.++...... .......+....|+|||+.++... ++.|++.+...+..++.... ..+
T Consensus        78 ~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~  156 (465)
T d1xfda1          78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG  156 (465)
T ss_dssp             EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT
T ss_pred             EEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc
Confidence            54         3567999999998764221 122334566789999999988874 67799998877765544322 111


Q ss_pred             C-----------------eeEEEEccCCCEEEEEC---C---------------------------------eEEEEECC
Q 008041          161 G-----------------ISCMAVSSDGKMLATAA---G---------------------------------QLKTFNCS  187 (579)
Q Consensus       161 ~-----------------v~~l~~~p~g~~l~~~~---~---------------------------------~i~vwd~~  187 (579)
                      .                 -.++-|||||+.||...   .                                 .+.++|+.
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~  236 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence            1                 24678999999999753   1                                 24455554


Q ss_pred             CCeeeEEee------cCCCCEEEEEEecCCCEEEEEecCCC---eEEEEEcCCCccc
Q 008041          188 DHKKMQKFS------GHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQ  235 (579)
Q Consensus       188 ~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~~d~---~i~vwd~~~~~~~  235 (579)
                      ++.......      ....-+..+.|+|+++.++.....+.   .+.++|..+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            443221111      11223677899999987666543232   5788888887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.79  E-value=3.4e-06  Score=79.43  Aligned_cols=224  Identities=12%  Similarity=0.099  Sum_probs=129.4

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++|+++|++.++-...++|..|+..++.....+.........+.+.++                           +.+++
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d---------------------------G~l~v   97 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD---------------------------GRLFV   97 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT---------------------------SCEEE
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC---------------------------CCEEE
Confidence            388999986666667888888888777655444332222222223222                           55555


Q ss_pred             EEECC----CeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC
Q 008041           91 LGTGG----GDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        91 ~~~~~----g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +...+    +.+...+..++........ .-......+.+.++|++.++...      .+.+..++.. ++.+..+...-
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~  176 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNI  176 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeecc
Confidence            44332    3355556555554322211 11245789999999986655422      2336666643 33333333333


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECCCC-eeeEE-------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQK-------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~-~~~~~-------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd  228 (579)
                      ...+.++|+|+++.|..+.   +.|+.|++... .....       ..........+++.++|+..++.. ..+.|.+|+
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g~V~~~~  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTTEEEEEC
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCCEEEEEC
Confidence            4568899999999776665   89999998642 11111       111122356799999999777665 689999999


Q ss_pred             cCCCccccceeeeeee----cCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          229 TDGVKKQSASCVLAME----HPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      .. ++..   ....++    .......+++|.     +++..+++.+.
T Consensus       256 p~-G~~l---~~i~~P~~~~~~~~~~~~~~~~-----~~~~~~~~t~~  294 (319)
T d2dg1a1         256 KR-GYPI---GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSN  294 (319)
T ss_dssp             TT-SCEE---EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEE
T ss_pred             CC-CcEE---EEEeCCCcCCCcCceeeeEEEe-----CCCCEEEEEcC
Confidence            64 4422   111111    112234566665     66666666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.3e-05  Score=72.94  Aligned_cols=235  Identities=9%  Similarity=-0.016  Sum_probs=132.3

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      +|+|.|....... .+. .+...+...+|+|||+.|+......   .+.+.+...+.. ..+..+........|+|+|+.
T Consensus        20 ~l~i~d~dG~~~~-~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCE-EEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcE-EEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCe
Confidence            4777777654443 232 3557789999999999998765433   467777665554 344556778889999999999


Q ss_pred             EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecC
Q 008041          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++...   +  .+..+........ ....+........+++++..++..+..++.  |...++......      .....
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~------~~~~~  169 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------RITWE  169 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE------ECCCS
T ss_pred             eeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccce------eeecc
Confidence            88765   2  3444443333332 333344555666788888776666545554  445555554321      12223


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccccee
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  323 (579)
                      ........++     |+++.++..+.++   .+.+.+...+.............   ..++|+++    .|+..+..+  
T Consensus       170 ~~~~~~~~~s-----pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---p~~SPDG~----~i~f~s~~~--  235 (269)
T d2hqsa1         170 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDET---PSLAPNGT----MVIYSSSQG--  235 (269)
T ss_dssp             SSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEE---EEECTTSS----EEEEEEEET--
T ss_pred             cccccccccc-----cccceeEEEeecCCceeeeEeecccccceEeecCccccc---eEECCCCC----EEEEEEcCC--
Confidence            3334445565     9999988887654   45555655544322222211111   12688888    444333321  


Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008041          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                        ....+.+..-.  ....+.+......+...+|||
T Consensus       236 --~~~~l~~~~~d--g~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         236 --MGSVLNLVSTD--GRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             --TEEEEEEEETT--SCCEEECCCSSSEEEEEEECC
T ss_pred             --CCcEEEEEECC--CCCEEEEeCCCCcEEeEEeCC
Confidence              12233332211  122334555555666777887

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.2e-05  Score=73.15  Aligned_cols=187  Identities=14%  Similarity=0.110  Sum_probs=114.9

Q ss_pred             CcEEEEEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcE--EEEeCCCCceeeEeecCC
Q 008041           86 SSLLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMV--CEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v--~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.|+......   .+.+.+...+......  .+........|+|+|+.++.... ++..  ..+........ ......
T Consensus        50 Gk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  126 (269)
T d2hqsa1          50 GSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR  126 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS
T ss_pred             CCEEEEEEeeccCcceeeeecccCceeEEe--eeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeecc
Confidence            66677665544   3777777776654333  46788899999999999876553 3332  23333333322 222334


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .......+++++..+....     ..|.+.+...+... ....+........|+|+++.++..+...+...+|.......
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~  205 (269)
T d2hqsa1         127 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  205 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             ccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecCCceeeeEeecccc
Confidence            4555667788877666544     36777787776433 34445667778899999999888776566555555443322


Q ss_pred             ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCcee
Q 008041          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEE  286 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~  286 (579)
                      .   . ... ..........|+     |||+.|+..+..   ..|++++++.+..
T Consensus       206 ~---~-~~~-~~~~~~~~p~~S-----PDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         206 G---V-QVL-SSTFLDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             C---E-EEC-CCSSSCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             c---c-eEe-ecCccccceEEC-----CCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            1   1 111 122222345576     999998766653   3788899877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=1.1e-05  Score=75.72  Aligned_cols=195  Identities=12%  Similarity=0.087  Sum_probs=125.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCceeeEeecC--C
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRAS--T  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d~~v~iwd~~~~~~~~~~~~~--~  159 (579)
                      +++.++-...|.|+.|++.+++...... .......+++|+++|+.+++...    .+.+...+...+.........  .
T Consensus        51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  129 (319)
T d2dg1a1          51 GQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  129 (319)
T ss_dssp             SCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc
Confidence            6666666678889999988876554432 34567899999999987766543    234555665544443333221  2


Q ss_pred             CCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          160 KGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      ..++.+++.|+|++.++..        +.++.++...+ .+..+...-...+.++|+|+++.|+.+....+.|..|++..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            3578899999999877753        34666665433 33333333345678999999997766655788999999875


Q ss_pred             Cccccce---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041          232 VKKQSAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       232 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  288 (579)
                      .......   ..............++++     ++|+..++....|.|.+||. .++.+.
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD-----~~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCID-----SDDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEB-----TTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             CCceeccccceeeeccCCccceeeeeEc-----CCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence            4321100   011111112234567776     89998888888999999994 576654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.58  E-value=6.1e-06  Score=77.32  Aligned_cols=115  Identities=8%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             CCEEEEEEccCCC----EEE-EEeCCCcEEEEeCCCCceee------Eeec-CCCCeeEEEEccCCCEEEEEC--CeEEE
Q 008041          118 GGVSAISFATHGS----CIY-SAGADGMVCEIDPLTGSLLG------KFRA-STKGISCMAVSSDGKMLATAA--GQLKT  183 (579)
Q Consensus       118 ~~V~~l~~~~~~~----~l~-s~~~d~~v~iwd~~~~~~~~------~~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~v  183 (579)
                      ...+.++|+|++.    .|+ +-+..+.|..||+.....+.      .+.. .......+++.++|++.++..  +.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            3457899998765    444 44677889999875432221      1222 122456899999999877653  89999


Q ss_pred             EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       184 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      ||.+.++.+..+.......++++|.|+++.|+.+...++.|...++...
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            9998888777777666778999999999866665556788888886554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=1.6e-06  Score=79.16  Aligned_cols=190  Identities=8%  Similarity=0.032  Sum_probs=114.5

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++++++|+++++....+.+++++-.++.......+.                  . ....+++.+.         +.+++
T Consensus        62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~------------------~-~p~~iavd~~---------g~i~v  113 (260)
T d1rwia_          62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL------------------N-YPEGLAVDTQ---------GAVYV  113 (260)
T ss_dssp             EEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC------------------C-SEEEEEECTT---------CCEEE
T ss_pred             EEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee------------------e-eccccccccc---------ceeEe
Confidence            388888887777666666666655444433221110                  0 1112222221         44444


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      .-..+..+..++.......... ........++++.++|+.+++...++.|..+|.............-.....++++++
T Consensus       114 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         114 ADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             EEGGGTEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eccccccccccccccceeeeee-ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeee
Confidence            4444455666665554432221 122345678999999998888888889999997654433222233456789999999


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041          171 GKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       171 g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~  231 (579)
                      |+++++..  +.|..++..... ...+ ...-.....|+++++|..+++-. .++.|+.++...
T Consensus       193 g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~-~~~rI~~i~~~~  254 (260)
T d1rwia_         193 GTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLE  254 (260)
T ss_dssp             CCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEG-GGTEEEEECCCG
T ss_pred             eeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEEC-CCCEEEEEeCCC
Confidence            99888776  688888765443 2222 22334568999999998766644 567676655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=1.2e-05  Score=73.79  Aligned_cols=143  Identities=13%  Similarity=0.167  Sum_probs=103.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CCCCe
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v  162 (579)
                      +.+++.....+.+.+++... +.+..+ ...+......+++.++++.+++....+.|++||. +|+.+.++..  .....
T Consensus       125 G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         125 GRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYP  202 (279)
T ss_dssp             SCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSE
T ss_pred             CcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCC
Confidence            44555555556677777543 333332 2446677899999999988888888899999995 5777777642  33467


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      ..|+++|+|+++++-.   +.|.+|+ .+|+.+.++...  ......+++.|+|.+++ +. .++.|++|......
T Consensus       203 ~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~-~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         203 IGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-AS-KDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EE-TTTEEEEEECSCCC
T ss_pred             cccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-Ee-CCCeEEEEEeeeec
Confidence            8999999999887754   4699998 468877777433  34578999999997554 45 68899999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.54  E-value=1.5e-05  Score=74.24  Aligned_cols=184  Identities=11%  Similarity=0.094  Sum_probs=121.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee-cCCCCe
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR-ASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~-~~~~~v  162 (579)
                      ++++++...++.|+.|+.......  + ......+.+++|.++|+.+++...++.+..|+.....  ...... ......
T Consensus        39 G~l~vt~~~~~~I~~i~p~g~~~~--~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (302)
T d2p4oa1          39 GTIFVTNHEVGEIVSITPDGNQQI--H-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  115 (302)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEE--E-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCEEEEeCCCCEEEEEeCCCCEEE--E-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcccc
Confidence            778888888899999987654332  2 2355789999999999988888888888888765432  222211 233468


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--------C--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--------H--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--------h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~  230 (579)
                      +.+++.++|+++++..  +.++.++...+........        +  ......+.+.  +.+++.+....+.|..++..
T Consensus       116 n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         116 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBC
T ss_pred             ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccc
Confidence            8999999999888876  7888888887754322211        1  1234556554  44555555578899988887


Q ss_pred             CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  282 (579)
                      ............   .......++++     ++|.+.++...+++|..|+..
T Consensus       194 ~~~~~~~~~~~~---~~~~pdgia~d-----~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         194 STDKPGEPEIFV---EQTNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             TTSCBCCCEEEE---ESCCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred             cccccccccccc---CCCCCcceEEC-----CCCCEEEEEcCCCcEEEECCC
Confidence            654321111111   12223456666     889887777778888888654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=3.5e-05  Score=71.26  Aligned_cols=193  Identities=13%  Similarity=0.034  Sum_probs=128.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCC
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~  161 (579)
                      +.+..+--..+.|..||+.+++.....   ....+.++++.++|.++++ +.+ .+..+|..+++........    ...
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccc
Confidence            445555556788999999998764222   3457889999999876654 455 4889999888754432211    126


Q ss_pred             eeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          162 ISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ++.+.+.|+|++.++..      +.-.+|....++....+.. -...+.+.|+++++.++.+....+.|..|++......
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence            78999999999877653      3456676667765544443 3456789999999977766657788999987643211


Q ss_pred             --c-ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          236 --S-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       236 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        . ................++++     .+|++.++.-..|.|..||. +++.+...
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD-----~~GnlWva~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             cccceEEEeccCcccccccceEEc-----CCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence              1 11112222334455667776     88888777777889999994 56666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.6e-06  Score=86.25  Aligned_cols=140  Identities=10%  Similarity=0.057  Sum_probs=96.6

Q ss_pred             EEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEe---------CCCcEEEEeCCCCceeeEee--
Q 008041           90 VLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFR--  156 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~--  156 (579)
                      +.-..+|.|.+||+.+++....+.  .-....+....|+||+++++...         ..+.+.++|+.++.......  
T Consensus        31 ~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~  110 (465)
T d1xfda1          31 IYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE  110 (465)
T ss_dssp             CCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT
T ss_pred             EEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc
Confidence            444667889999999887532221  11234677889999999987763         35678999999887544322  


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEee-cCCCCE-----------------EEEEEecCCCEEEEE
Q 008041          157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS-GHPGAV-----------------RFMTFSDNGKYVLSS  217 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~-~h~~~v-----------------~~l~~s~~~~~l~s~  217 (579)
                      .....+....|||||+.+|... +.|++.+..++..++... +..+.|                 ..+.|||||++|+..
T Consensus       111 ~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         111 VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             CCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            2334566789999999998877 899999988776554332 222222                 467899999999987


Q ss_pred             ecCCCeEEEEEc
Q 008041          218 AVGERYIALWRT  229 (579)
Q Consensus       218 ~~~d~~i~vwd~  229 (579)
                      ..++..+..+.+
T Consensus       191 ~~D~s~V~~~~~  202 (465)
T d1xfda1         191 AINDSRVPIMEL  202 (465)
T ss_dssp             EEECTTSCEEEE
T ss_pred             Eecccccceeec
Confidence            655565655544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.37  E-value=0.00085  Score=61.51  Aligned_cols=217  Identities=14%  Similarity=0.111  Sum_probs=131.5

Q ss_pred             EEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041           12 SFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      .|++..+.|.... ..++|.-||..+++... +..                   .....++.+..          ...++
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~-------------------~~~~~~i~~~~----------dg~l~   73 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKIS----------DSKQL   73 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEE----------TTEEE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC-------------------CCCcEEEEEec----------CCCEE
Confidence            4676555444444 46778888888776532 211                   11233444433          23345


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCC---CCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCceeeEeecCCCCee
Q 008041           91 LGTGGGDVLALAVSAGQLKWRLSDCH---PGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~~~----d~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +++.+ .+.++|..+++.........   ...++++.+.|+|++.++...    .+.-.+|.+..++....+.. -...+
T Consensus        74 va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~N  151 (295)
T d2ghsa1          74 IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPN  151 (295)
T ss_dssp             EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEE
T ss_pred             EEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcc
Confidence            55554 58999999987643222111   225889999999987665432    23445666666765554443 33567


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCC------e--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041          164 CMAVSSDGKMLATAA---GQLKTFNCSDH------K--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~------~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~  232 (579)
                      .++|+|+++.+..+.   +.|+.|++...      +  ....+.+..+....+++..+|++.++.- ..+.|..||... 
T Consensus       152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~V~~~dp~G-  229 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDTDG-  229 (295)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECTTC-
T ss_pred             eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCceEEecCCC-
Confidence            899999999776665   78999887531      1  1122334455678899999998776654 578899999654 


Q ss_pred             ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                      +.     +..+..+....++++|..    +|.+.|++.+
T Consensus       230 ~~-----~~~i~lP~~~~T~~~FGG----~d~~~LyvTt  259 (295)
T d2ghsa1         230 NH-----IARYEVPGKQTTCPAFIG----PDASRLLVTS  259 (295)
T ss_dssp             CE-----EEEEECSCSBEEEEEEES----TTSCEEEEEE
T ss_pred             cE-----eeEecCCCCceEEEEEeC----CCCCEEEEEE
Confidence            32     233444444556666742    5666665554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.29  E-value=6.1e-05  Score=68.65  Aligned_cols=228  Identities=11%  Similarity=0.036  Sum_probs=122.9

Q ss_pred             EEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041           12 SFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ..|||  |+.+|..+ +|.|.+.|+.+++..+ +...........|+++                           +..|
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPD---------------------------G~~i   55 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPD---------------------------GRKI   55 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTT---------------------------SSEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCC---------------------------CCEE
Confidence            45899  99999876 5678888999887654 4444434444444444                           5556


Q ss_pred             EEEEC-C-----CeEEEEEccCCeEEEEecC-----CCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCcee
Q 008041           90 VLGTG-G-----GDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLL  152 (579)
Q Consensus        90 ~~~~~-~-----g~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~  152 (579)
                      +.... +     +.|.+++..+++.......     ..........|+|+|+.++.....      ..+...+...+...
T Consensus        56 af~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
T d1k32a2          56 AIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV  135 (281)
T ss_dssp             EEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred             EEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence            55432 2     2488888888876532211     112245678899999998775322      23455555444332


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-C------------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041          153 GKFRASTKGISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-~------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      ..   +........+.+.+..++... .            ....+........ ....+........++++.  ++....
T Consensus       136 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~  209 (281)
T d1k32a2         136 PL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR--IYFITD  209 (281)
T ss_dssp             EC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE--EEEEEC
T ss_pred             Ee---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc--cceecc
Confidence            22   222333333333333333332 0            1122222222222 223334445556666654  333332


Q ss_pred             CC--CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041          220 GE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       220 ~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  287 (579)
                      .+  ..|.++|+.+.+..   . .+ .....  ....++     |||+.|+. ..+|.|+++|+.+++..
T Consensus       210 ~~~~~~l~~~d~~g~~~~---~-lt-~~~~~--~~~~~S-----pDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLR---K-HT-SFTDY--YPRHLN-----TDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTSSCEEEEEETTSCSCE---E-CC-CCCSS--CEEEEE-----ESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             cccccceEEEeCCCCceE---E-ee-cCCCc--ccccCc-----CCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            33  35777788776533   1 11 11111  123455     89998876 45789999999888653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.04  E-value=0.001  Score=67.18  Aligned_cols=153  Identities=16%  Similarity=0.208  Sum_probs=92.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC---
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---   94 (579)
                      ..++.++.||.|.-.|.++|+....+...........-+++            +.+            ...++++..   
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p------------~v~------------~~~vivg~~~~~  171 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FVA------------KDTVLMGCSGAE  171 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEEECBCGG
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecC------------eEe------------CCeEEEeecccc
Confidence            45667788999998999999988766422211110000111            000            445566664   


Q ss_pred             ---CCeEEEEEccCCeEEEEecCCC------------------------------------CCCE-EEEEEccCCCEEEE
Q 008041           95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PGGV-SAISFATHGSCIYS  134 (579)
Q Consensus        95 ---~g~i~iwd~~~~~~~~~~~~~h------------------------------------~~~V-~~l~~~~~~~~l~s  134 (579)
                         .|.|+-+|+.+|+.+++.....                                    ...+ ...++.+....++.
T Consensus       172 ~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~  251 (571)
T d2ad6a1         172 LGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY  251 (571)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeee
Confidence               5779999999999988753210                                    1112 23456666666665


Q ss_pred             EeC----------------CCcEEEEeCCCCceeeEeecCCC---------CeeEEEEccCCC---EEEEEC--CeEEEE
Q 008041          135 AGA----------------DGMVCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTF  184 (579)
Q Consensus       135 ~~~----------------d~~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~p~g~---~l~~~~--~~i~vw  184 (579)
                      +..                ...+...|.++|+.+..++....         ......+..+|+   .++.++  |.++++
T Consensus       252 ~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vl  331 (571)
T d2ad6a1         252 GSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             ECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEE
T ss_pred             ecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEE
Confidence            543                24578889999999887774322         122222333554   233444  899999


Q ss_pred             ECCCCeeeEE
Q 008041          185 NCSDHKKMQK  194 (579)
Q Consensus       185 d~~~~~~~~~  194 (579)
                      |..+|+.+..
T Consensus       332 Dr~tG~~i~~  341 (571)
T d2ad6a1         332 NRENGNLIVA  341 (571)
T ss_dssp             ETTTCCEEEE
T ss_pred             ecCCCcEeee
Confidence            9999987643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.02  E-value=0.00091  Score=67.60  Aligned_cols=118  Identities=16%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeE
Q 008041           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      .+..++.++.|.-+|.++|+.+.++...........-...      ........|            ...++.++.++.+
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~------~~~~g~~~~------------~~~v~~~t~~g~l  140 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD------VVNRGVALW------------KGKVYVGAWDGRL  140 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC------SCCCCCEEE------------TTEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccc------cccccceEE------------CCcEEEEecccce
Confidence            4566777899999999999999987632211110000000      000001111            4568889999999


Q ss_pred             EEEEccCCeEEEEecCC-CC-CCEEEEEEcc--CCCEEEEEe------CCCcEEEEeCCCCceeeEe
Q 008041           99 LALAVSAGQLKWRLSDC-HP-GGVSAISFAT--HGSCIYSAG------ADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        99 ~iwd~~~~~~~~~~~~~-h~-~~V~~l~~~~--~~~~l~s~~------~d~~v~iwd~~~~~~~~~~  155 (579)
                      .-.|..+|+.+++.... +. ..+. +.-.|  -+..++.++      ..|.|+.+|..+|+.+..+
T Consensus       141 ~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         141 IALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             eeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            99999999988765321 11 1111 00001  122344432      2456888888888776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.96  E-value=0.0011  Score=66.87  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeE
Q 008041           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      .+..++.++.|.-.|.++|+.+.++...............      ........|            +..++.++.++.+
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~------~~~~~~~~~------------~~~v~~~~~~g~l  129 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD------AVNRGVALW------------GDKVYVGTLDGRL  129 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC------SCCCCCEEE------------BTEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccc------ccccCccee------------CCeEEEEeCCCEE
Confidence            4556777888988999999999987532211100000000      000001111            4568999999999


Q ss_pred             EEEEccCCeEEEEec
Q 008041           99 LALAVSAGQLKWRLS  113 (579)
Q Consensus        99 ~iwd~~~~~~~~~~~  113 (579)
                      .-.|..+|+.++...
T Consensus       130 ~Alda~tG~~~w~~~  144 (560)
T d1kv9a2         130 IALDAKTGKAIWSQQ  144 (560)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEeccC
Confidence            999999999887663

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.96  E-value=0.0019  Score=65.31  Aligned_cols=153  Identities=15%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC---
Q 008041           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (579)
Q Consensus        18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---   94 (579)
                      .+++.++.|+.|.-.|.++|+....+...........-+++            +.            -...+++++.   
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P------------~v------------~~~~vivg~~~~e  177 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YV------------VKDKVIIGSSGAE  177 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EE------------ETTEEEECCBCGG
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCC------------cE------------ECCeEEEeecccc
Confidence            36788888999999999999999887532211111111111            00            0455666664   


Q ss_pred             ---CCeEEEEEccCCeEEEEecCCC------------------------------------CCCE-EEEEEccCCCEEEE
Q 008041           95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PGGV-SAISFATHGSCIYS  134 (579)
Q Consensus        95 ---~g~i~iwd~~~~~~~~~~~~~h------------------------------------~~~V-~~l~~~~~~~~l~s  134 (579)
                         .|.|+-+|+.+|+.++++....                                    ...+ ..+.+.+....++.
T Consensus       178 ~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~  257 (596)
T d1w6sa_         178 LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF  257 (596)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeec
Confidence               3789999999999998763210                                    0111 24456666666666


Q ss_pred             EeCC----------------CcEEEEeCCCCceeeEeecCCC---------CeeEEEE-ccCCC---EEEEEC--CeEEE
Q 008041          135 AGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAV-SSDGK---MLATAA--GQLKT  183 (579)
Q Consensus       135 ~~~d----------------~~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~-~p~g~---~l~~~~--~~i~v  183 (579)
                      +..+                ..|...|+.+|+.+..++....         .+..+.. ..+|+   .++.+.  |.+++
T Consensus       258 ~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~v  337 (596)
T d1w6sa_         258 GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT  337 (596)
T ss_dssp             ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceee
Confidence            5332                3477889999998887764221         1112221 23443   455555  89999


Q ss_pred             EECCCCeeeEE
Q 008041          184 FNCSDHKKMQK  194 (579)
Q Consensus       184 wd~~~~~~~~~  194 (579)
                      +|-.+|+.+..
T Consensus       338 lDr~tG~~i~~  348 (596)
T d1w6sa_         338 LDRTDGALVSA  348 (596)
T ss_dssp             EETTTCCEEEE
T ss_pred             ecCCCCceeee
Confidence            99999987643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.96  E-value=0.0038  Score=58.45  Aligned_cols=191  Identities=10%  Similarity=0.084  Sum_probs=118.4

Q ss_pred             CcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCC------------------cEEEE
Q 008041           86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADG------------------MVCEI  144 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~------------------~v~iw  144 (579)
                      ++++++.. .++.|.+-|+.+.++...+.-.....+..+...+  +..|++..+.+.                  .+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            67777776 4566999999999876544334556788877755  445666665532                  36678


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C----------------eEEEEEC---------------------
Q 008041          145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNC---------------------  186 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~----------------~i~vwd~---------------------  186 (579)
                      |..+.+....+... +....++++|+|+++++.+ +                .+.+++.                     
T Consensus       179 D~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         179 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            98888777666543 3567899999999988864 1                2344443                     


Q ss_pred             --CCC---eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccceeeee-eecCceeEEeEE
Q 008041          187 --SDH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSASCVLA-MEHPAVFMDCRC  254 (579)
Q Consensus       187 --~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~------~~~~~~~~-~~~~~~~~~~~~  254 (579)
                        +..   ..++.++.. .....+.++|||+++++++.-+.++.|+|++.-..      ....++.. ....-..+ ...
T Consensus       258 D~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL-ht~  335 (459)
T d1fwxa2         258 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL-HTA  335 (459)
T ss_dssp             ECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE-EEE
T ss_pred             cccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc-ccc
Confidence              210   112222222 22467899999999999998899999999864321      11112211 11111222 234


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041          255 IDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  284 (579)
                      |+     ..|.-..+---|.+|.-|++...
T Consensus       336 fd-----~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         336 FD-----GRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EC-----TTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cC-----CCceEEEEeeccceEEEEecchh
Confidence            54     56643333345999999997543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.0047  Score=57.80  Aligned_cols=232  Identities=9%  Similarity=0.075  Sum_probs=132.2

Q ss_pred             EEEcc---CCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccc-cccccccccccccccccccceEEeeecccccccccC
Q 008041           11 TSFSP---ALDYFAICS-GDARIKIWDTLKGQVQTEFADIAST-ETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fsp---dg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++|..   ||+|+.... .+++|.+-|+++.++.+...-+... +-.+....                   .++      
T Consensus        90 ~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~-------------------~p~------  144 (459)
T d1fwxa2          90 MSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK-------------------WPR------  144 (459)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC-------------------SSB------
T ss_pred             ccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeeccc-------------------CCC------
Confidence            45665   899988777 5889999999999987655422110 00000000                   000      


Q ss_pred             CcEEEEEECC------------------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---------
Q 008041           86 SSLLVLGTGG------------------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---------  138 (579)
Q Consensus        86 ~~~l~~~~~~------------------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---------  138 (579)
                      ..+++.++..                  +.+.++|..+.+..+++.-+  +....+.++++|+++++.+.+         
T Consensus       145 T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e  222 (459)
T d1fwxa2         145 SNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPE  222 (459)
T ss_dssp             CSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred             eEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhh
Confidence            2333333321                  23668899988887776532  346678999999998877643         


Q ss_pred             -----------------------------CcEEEEeCCC--C-ceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008041          139 -----------------------------GMVCEIDPLT--G-SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT  183 (579)
Q Consensus       139 -----------------------------~~v~iwd~~~--~-~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~v  183 (579)
                                                   +.+.+.|.+.  + ..+..+.. ......+.++|||+++++++   .++.|
T Consensus       223 ~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSV  301 (459)
T d1fwxa2         223 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTV  301 (459)
T ss_dssp             HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred             cccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEE
Confidence                                         1223334332  1 11222222 23456789999999999998   79999


Q ss_pred             EECCCCe-----------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC------ccccceeeeeeecC
Q 008041          184 FNCSDHK-----------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV------KKQSASCVLAMEHP  246 (579)
Q Consensus       184 wd~~~~~-----------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~  246 (579)
                      +|++.-.           .+..-....-.-..-+|...| ...++-.-|..|--|++...      ... ...+..+.-+
T Consensus       302 iD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~-~~v~~k~~v~  379 (459)
T d1fwxa2         302 LDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVH  379 (459)
T ss_dssp             EEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECS
T ss_pred             EEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecchhhhhhccccC-Ccceeccccc
Confidence            9986321           111111122234556888877 45555567999999998543      111 1122233322


Q ss_pred             ceeEEeEEecCCcccCCCcEEEEEEc
Q 008041          247 AVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~  272 (579)
                      -..-.....-.....|+|++|++.+.
T Consensus       380 y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         380 YQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             SCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cCCCCCccCcCCcCCCCCCEEEEecc
Confidence            22222222222334599999998864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.69  E-value=0.0013  Score=59.20  Aligned_cols=197  Identities=14%  Similarity=0.077  Sum_probs=98.1

Q ss_pred             eEEEEccCCCEEEEEeC-C-----CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041            9 ILTSFSPALDYFAICSG-D-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         9 l~~~fspdg~~lasg~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ...+|||||++||.... +     ..|.+++..+++..+... ......           ..........|.+.      
T Consensus        44 ~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~-~~~~~~-----------~~~~~~~~~~~spd------  105 (281)
T d1k32a2          44 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY-FSGKST-----------GRRMFTDVAGFDPD------  105 (281)
T ss_dssp             EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC-CCEEEE-----------TTEECSEEEEECTT------
T ss_pred             cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee-cCCCcc-----------CccccccccccCCC------
Confidence            34589999999997643 2     247777888887654221 111000           00111223445443      


Q ss_pred             ccCCcEEEEEECCC------eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----------cEEEEe
Q 008041           83 KLGSSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----------MVCEID  145 (579)
Q Consensus        83 ~~~~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----------~v~iwd  145 (579)
                         +..++......      .+...+...+.....    +........+.+.+..++....+.           ....+.
T Consensus       106 ---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (281)
T d1k32a2         106 ---GNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE  178 (281)
T ss_dssp             ---CCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred             ---CCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeee
Confidence               44555543321      255666665554321    222233333333333333322211           111122


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041          146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~  222 (579)
                      ...... ..............++++........   ..|+++|+.+++.. .+..+.. .....|+|||+.|+...  ++
T Consensus       179 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~-~~~~~~SpDG~~I~f~~--~~  253 (281)
T d1k32a2         179 VNSGAF-KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTD-YYPRHLNTDGRRILFSK--GG  253 (281)
T ss_dssp             EETTEE-EEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCS-SCEEEEEESSSCEEEEE--TT
T ss_pred             ccccce-eeccCCccccceeeeeccccceecccccccceEEEeCCCCceE-EeecCCC-cccccCcCCCCEEEEEe--CC
Confidence            112222 22222334445566666543333222   58999998776543 3432222 22346899999988754  68


Q ss_pred             eEEEEEcCCCccc
Q 008041          223 YIALWRTDGVKKQ  235 (579)
Q Consensus       223 ~i~vwd~~~~~~~  235 (579)
                      .|+++|+.+++..
T Consensus       254 ~l~~~d~~~g~~~  266 (281)
T d1k32a2         254 SIYIFNPDTEKIE  266 (281)
T ss_dssp             EEEEECTTTCCEE
T ss_pred             EEEEEECCCCCEE
Confidence            8999999888643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.024  Score=50.16  Aligned_cols=194  Identities=12%  Similarity=0.106  Sum_probs=121.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCC----C
Q 008041           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRAST----K  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~----~  160 (579)
                      ...|++-+ ...+.+||+.+.+.+....  ...+|.--.|-.+. .|+-. .+..|+-|++... .+.+.|.-|.    .
T Consensus        74 ~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~-~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~  148 (327)
T d1utca2          74 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  148 (327)
T ss_dssp             SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSSS-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCCC-EEEEE-cCCceEEEcccCCCCchhhhhhcccccCc
Confidence            45555555 5679999999998876653  34577777776554 44444 3567999999532 4666676654    3


Q ss_pred             CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEE-E--ecCCCeEEE
Q 008041          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLS-S--AVGERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s-~--~~~d~~i~v  226 (579)
                      .|..-..++++++++..+         |.+.+|..+.+ .-+.+.||.+.-..+.+..+  ...+++ +  +...+.+++
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhI  227 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  227 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEE
Confidence            788888899999888765         78999998765 34456777654444433211  112222 1  112357888


Q ss_pred             EEcCCCcc--cc--ceee---eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041          227 WRTDGVKK--QS--ASCV---LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       227 wd~~~~~~--~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      .++.....  ..  ...+   +.-+......-.+..+     +.-..+...+.-|.+++||++|+..+...
T Consensus       228 iEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-----~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         228 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-----ccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence            88876421  10  1111   1111223333444444     56678888899999999999999887543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.059  Score=47.63  Aligned_cols=188  Identities=9%  Similarity=-0.017  Sum_probs=113.3

Q ss_pred             cEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           87 SLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        87 ~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++... ..+.|+..++..+... .+.......+.++++..-+..++.+ ...+.|.+.++........+......+..
T Consensus        48 ~~iywsd~~~~~I~~~~l~g~~~~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~  126 (263)
T d1npea_          48 KVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG  126 (263)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCeEEEEEcccCCcE-EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcE
Confidence            3344443 4566888887765543 2223334578999998766666654 45679999998654433333333457899


Q ss_pred             EEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041          165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++++|...++....   +  .|.--++............-.....+++.+.++.|+.+....+.|...++......   .
T Consensus       127 l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~---~  203 (263)
T d1npea_         127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---K  203 (263)
T ss_dssp             EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---E
T ss_pred             EEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE---E
Confidence            99999776665543   2  35555665443332233333566899999888877666556788999998765432   2


Q ss_pred             eeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeec
Q 008041          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR  288 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~  288 (579)
                      +..  ....... +.+       ++.+|...+ ..+.|...|..+++.+.
T Consensus       204 v~~--~~~~P~~-lav-------~~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         204 VLE--GLQYPFA-VTS-------YGKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             EEE--CCCSEEE-EEE-------ETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEC--CCCCcEE-EEE-------ECCEEEEEECCCCEEEEEECCCCccce
Confidence            222  1122222 222       234555554 56788888888776554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.23  E-value=0.073  Score=53.01  Aligned_cols=196  Identities=13%  Similarity=0.139  Sum_probs=112.6

Q ss_pred             EEEEEe-CCCcEEEEECC-CCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041           19 YFAICS-GDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        19 ~lasg~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      .+..++ .++.|.-.|.. +|+.+.+++..............       ....-+..           .+..++.++.+|
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~rg~a~-----------~~~~i~~~~~~g  125 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD-------VVDRGLAY-----------GAGQIVKKQANG  125 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC-------SCCCCCEE-----------ETTEEEEECTTS
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccC-------cCCCccee-----------eCCeEEEEeCCC
Confidence            344444 36888888974 79999988632221111111000       00000011           145688999999


Q ss_pred             eEEEEEccCCeEEEEecCC---CCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeecCC--------
Q 008041           97 DVLALAVSAGQLKWRLSDC---HPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST--------  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~--------  159 (579)
                      .+.-.|..+|+..+.....   ....+++--.-.++ .++.+.      .+|.|+.+|+.+|+.+..+....        
T Consensus       126 ~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  204 (571)
T d2ad6a1         126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             cEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccc
Confidence            9999999999987765211   11111111111134 444444      36789999999999988765321        


Q ss_pred             -----------------------------CCe-eEEEEccCCCEEEEEC------------------CeEEEEECCCCee
Q 008041          160 -----------------------------KGI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKK  191 (579)
Q Consensus       160 -----------------------------~~v-~~l~~~p~g~~l~~~~------------------~~i~vwd~~~~~~  191 (579)
                                                   ..+ ...+++|+..++..+.                  ..+...|.++|+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~  284 (571)
T d2ad6a1         205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhh
Confidence                                         011 2346667666655442                  2578889999999


Q ss_pred             eEEeecCCC---------CEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCcc
Q 008041          192 MQKFSGHPG---------AVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       192 ~~~~~~h~~---------~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      +..++.+..         +........+++   .++..+ .+|.+++.|..+++.
T Consensus       285 ~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         285 KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNL  338 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCE
T ss_pred             eecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCCCcE
Confidence            887764322         122223333443   334444 789999999888764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=0.041  Score=55.12  Aligned_cols=30  Identities=20%  Similarity=0.185  Sum_probs=25.6

Q ss_pred             CCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041          262 DAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..|..+++|+.||.++-||.+||+.+-..+
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            356788889999999999999999986654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.075  Score=46.94  Aligned_cols=195  Identities=9%  Similarity=-0.076  Sum_probs=112.2

Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041            9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 l~~~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..++|++..+.+.... .++.|+..++..+.....+......                  ...++....         +.
T Consensus        39 ~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~------------------p~~iAvD~~---------~~   91 (263)
T d1npea_          39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS------------------PEGIALDHL---------GR   91 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC------------------EEEEEEETT---------TT
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc------------------ccEEEEecc---------CC
Confidence            3457887777766654 3566777777655443333211011                  111222111         23


Q ss_pred             EEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCee
Q 008041           88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      .|+ +-...+.|.+.++...... .+.......+.++++.|...+++.....   ..|..-++............-....
T Consensus        92 ~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~  170 (263)
T d1npea_          92 TIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN  170 (263)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred             eEEEeccCCCEEEEEecCCceEE-EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccc
Confidence            344 4445567888888765543 2223334678999999977776654322   2355556643333222333334678


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~  234 (579)
                      .+++++.++.|..+.   +.|...++........+.+-.. ..+|++.  +.+|+.+....+.|...|..+++.
T Consensus       171 glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            999998887776654   7899999876554434444333 3577775  445555544678888888887653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.94  E-value=0.089  Score=52.63  Aligned_cols=203  Identities=9%  Similarity=0.067  Sum_probs=115.1

Q ss_pred             CCEEEEEeCCCcEEEEEC-CCCeEEEEeccCccccccccccccccccccccccc-eEEeeecccccccccCCcEEEEEEC
Q 008041           17 LDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT-CMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        17 g~~lasg~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      |..+++++.++.+...|. .+|+.+.++...........-..       ..... ...|.....      ....++.++.
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~-------~~~~RGv~~~~~~~~------~~~~v~~~t~  129 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACC-------DLVNRGLAYWPGDGK------TPALILKTQL  129 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSS-------CSCCCCCEEECCCSS------SCCEEEEECT
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccccccc-------ccccceeEEecCCCC------CceEEEEEeC
Confidence            333344455677888887 58999988863221110000000       00001 112221111      1557899999


Q ss_pred             CCeEEEEEccCCeEEEEecCCC--C-CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC-----
Q 008041           95 GGDVLALAVSAGQLKWRLSDCH--P-GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST-----  159 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h--~-~~V~~-l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~-----  159 (579)
                      ++.|.-.|..+|+.++.+..+.  . ..+++ -.+  -+..++.+..      .|.|+-+|..+|+.+.++....     
T Consensus       130 dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~  207 (596)
T d1w6sa_         130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL  207 (596)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             CCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccc
Confidence            9999999999999988764221  1 11111 011  1334555543      4889999999999988765211     


Q ss_pred             --------------------------------C-CeeEEEEccCCCEEEEEC------------------CeEEEEECCC
Q 008041          160 --------------------------------K-GISCMAVSSDGKMLATAA------------------GQLKTFNCSD  188 (579)
Q Consensus       160 --------------------------------~-~v~~l~~~p~g~~l~~~~------------------~~i~vwd~~~  188 (579)
                                                      . .-..+++++...++..+.                  ..|...|.++
T Consensus       208 ~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~T  287 (596)
T d1w6sa_         208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT  287 (596)
T ss_dssp             TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccc
Confidence                                            0 112446667666666552                  2477889999


Q ss_pred             CeeeEEeec--CC-------CCEEEEEE-ecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041          189 HKKMQKFSG--HP-------GAVRFMTF-SDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       189 ~~~~~~~~~--h~-------~~v~~l~~-s~~~~---~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      |+.+..++.  |.       ....-+.. ..+|+   .++... .+|.+.++|..+++..
T Consensus       288 G~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         288 GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALV  346 (596)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             ccccccccceeccccCCccccceeeeeccccccccccceeccc-cccceeeecCCCCcee
Confidence            998877753  21       11111222 23443   445444 7899999999888643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.13  Score=45.43  Aligned_cols=159  Identities=11%  Similarity=-0.038  Sum_probs=98.6

Q ss_pred             CCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCee
Q 008041          117 PGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKK  191 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~  191 (579)
                      ...+.++++.+.+..++.+ ...++|.+.++..................++++|...++....    +.|.-.++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            3557788998766666555 4567899999875554444555556789999998655544433    4677777765433


Q ss_pred             eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEE
Q 008041          192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       192 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  270 (579)
                      .......-...+.+++.+.++.|+.+....+.|...++......   .+...... ....... +       ++.+|...
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~---~~~~~~~~~~~p~~la-v-------~~~~ly~t  224 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHPFSLA-V-------FEDKVFWT  224 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSEEEEE-E-------ETTEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE---EEEeCCCcccccEEEE-E-------ECCEEEEE
Confidence            33333334567899999988877777556789999998765422   22222211 2222322 2       22445555


Q ss_pred             E-cCCeEEEEEcCCcee
Q 008041          271 S-ETGVCYIWYGQNIEE  286 (579)
Q Consensus       271 ~-~dg~i~iwd~~~~~~  286 (579)
                      . .++.|+..+..+++.
T Consensus       225 d~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         225 DIINEAIFSANRLTGSD  241 (266)
T ss_dssp             ETTTTEEEEEETTTCCC
T ss_pred             ECCCCeEEEEECCCCcc
Confidence            4 567888887766643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.15  Score=44.87  Aligned_cols=223  Identities=12%  Similarity=0.135  Sum_probs=131.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      -.+|..+.||.=+ ..++.|||+++.+.+..+.-                   ..++.--.|...          +.|+.
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~-------------------~e~VvfWkWis~----------~~L~l  118 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL----------NTVAL  118 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEESSS----------SEEEE
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-------------------CCCcEEEEecCC----------CEEEE
Confidence            4689998888766 45899999999998876642                   223445566653          34444


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCCC
Q 008041           92 GTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      .+ +..|+-|++.......+...-|    ...|..-..+++.++++..+       -.|.+.+|..+ .+.-+.+.+|-.
T Consensus       119 VT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa  196 (327)
T d1utca2         119 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAA  196 (327)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEE
T ss_pred             Ec-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCccccceee
Confidence            44 4569999996543332333333    34678888889999866543       23678889875 444566777765


Q ss_pred             CeeEEEEccC---CCEEEEEC-----CeEEEEECCCCe---e-----eEEe--e--cCCCCEEEEEEecCCCEEEEEecC
Q 008041          161 GISCMAVSSD---GKMLATAA-----GQLKTFNCSDHK---K-----MQKF--S--GHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       161 ~v~~l~~~p~---g~~l~~~~-----~~i~vwd~~~~~---~-----~~~~--~--~h~~~v~~l~~s~~~~~l~s~~~~  220 (579)
                      ....+.+.-+   .++++.+.     +.+++.++....   .     ...+  +  ....-.-++..++.-..++.-+ .
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT-K  275 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K  275 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE-T
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe-c
Confidence            5544444321   12444443     588888876521   1     1111  1  1123345677777666666665 6


Q ss_pred             CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  277 (579)
                      -|.|++||+.++...     +.-.-....+-..+-.     .+..=+++...+|.|.
T Consensus       276 ~G~i~lyDleTgt~i-----~~nRIs~~~iF~~a~~-----~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         276 YGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTSEEE
T ss_pred             CcEEEEEEcccccEE-----EEeecCCCceEEeccC-----CCCceEEEECCCCeEE
Confidence            899999999998743     3332222222222222     3444455666777664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.53  E-value=0.12  Score=48.16  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=60.8

Q ss_pred             CcEEEEEECC-CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE--ee
Q 008041           86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK--FR  156 (579)
Q Consensus        86 ~~~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~--~~  156 (579)
                      +.+++.|..+ ..+.+||+.++.....-.......-.+.+..+||+.++.++.+      ..+.+||..+.+-...  ..
T Consensus        87 g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~  166 (387)
T d1k3ia3          87 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK  166 (387)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSC
T ss_pred             CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCc
Confidence            5666666555 4699999998876422111111122356667899998888643      3689999876642111  00


Q ss_pred             ------c-C-----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee
Q 008041          157 ------A-S-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (579)
Q Consensus       157 ------~-~-----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~  191 (579)
                            . +     ...-..+...++|+.+..+.  +.+.+++..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             SGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                  0 0     00111233445777777766  5677777776643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.32  Score=42.70  Aligned_cols=144  Identities=6%  Similarity=-0.086  Sum_probs=89.7

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      .+..+-...+.|.+.++......... ........+++++|...+++...  ..+.|...++............-..++.
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  168 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeE
Confidence            33444445567999998876654333 34456789999999666655543  3456777777533333333333356789


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      +++++.++.|..+.   +.|...++...........  ......++++.  +.+|+.+...++.|...+..+++
T Consensus       169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence            99999888777765   7899999865443322222  22345567766  34555554467888888877665

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.26  E-value=0.18  Score=50.18  Aligned_cols=146  Identities=11%  Similarity=0.078  Sum_probs=83.1

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCC----------------------------------EEEEEEccCCCEE
Q 008041           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG----------------------------------VSAISFATHGSCI  132 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~----------------------------------V~~l~~~~~~~~l  132 (579)
                      ..++.++.+|.++++|..+|+.+..........                                  -...+++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            467888899999999999999875442111000                                  1124677777777


Q ss_pred             EEEeCCCcEEEEeCCCCceeeEeecCC--C-CeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEe
Q 008041          133 YSAGADGMVCEIDPLTGSLLGKFRAST--K-GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       133 ~s~~~d~~v~iwd~~~~~~~~~~~~~~--~-~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s  208 (579)
                      +....+....++.....+.........  + ......+ +.+.-..... |.+.-||+.+++.+.+.+... +...=..+
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~ls  485 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLT  485 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEE
Confidence            766666655555543332211111100  0 0001111 0111100111 689999999999988775332 22221233


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041          209 DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       209 ~~~~~l~s~~~~d~~i~vwd~~~~~~~  235 (579)
                      ..+..+++++ .|+.++.+|..+++..
T Consensus       486 tagglVF~G~-~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         486 TAGNVVFQGT-ADGRLVAYHAATGEKL  511 (573)
T ss_dssp             ETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             EcCCEEEEEC-CCCeEEEEECCCCcEe
Confidence            4566777765 7999999999999855

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.06  E-value=0.5  Score=46.57  Aligned_cols=175  Identities=18%  Similarity=0.203  Sum_probs=101.9

Q ss_pred             cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe
Q 008041           28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ  107 (579)
Q Consensus        28 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~  107 (579)
                      .|.-.|.++|+....++.....+........          ..+.-...+.+     ....++.++.+|.++++|..+|+
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~----------~~l~~~~~~g~-----~~~~v~~~~k~G~~~~lDr~tG~  335 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQ----------ITLAELNIDGK-----PRKVLMQAPKNGFFYVLDRTNGK  335 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSC----------EEEEEEEETTE-----EEEEEEECCTTSEEEEEETTTCC
T ss_pred             eeEEecCCccceeEEEeccccccccccccce----------eeeeeeecCCc-----eeeeeeecCccceEEEEecCCCc
Confidence            4666788999988877754433322111100          01111111111     03467788899999999999999


Q ss_pred             EEEEecCCCCCCE-----------------------------------EEEEEccCCCEEEEEeC---------------
Q 008041          108 LKWRLSDCHPGGV-----------------------------------SAISFATHGSCIYSAGA---------------  137 (579)
Q Consensus       108 ~~~~~~~~h~~~V-----------------------------------~~l~~~~~~~~l~s~~~---------------  137 (579)
                      .+...........                                   ...+++|+...++....               
T Consensus       336 ~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~  415 (560)
T d1kv9a2         336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (560)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             ccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccc
Confidence            8755422111000                                   14456777766665432               


Q ss_pred             ---------------------CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE
Q 008041          138 ---------------------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       138 ---------------------d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~  194 (579)
                                           .|.+.-||+.+|+.+..+.... +..+-.+.-.|.+++.|+  |.++.+|.++|+.+.+
T Consensus       416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence                                 2567889999998887765322 222212223455666776  8999999999999988


Q ss_pred             eecCCCC-EEEEEEecCCC-EEEEEe
Q 008041          195 FSGHPGA-VRFMTFSDNGK-YVLSSA  218 (579)
Q Consensus       195 ~~~h~~~-v~~l~~s~~~~-~l~s~~  218 (579)
                      +.-.... -.-+.|..+|+ |+++.+
T Consensus       495 ~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         495 FEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EECCCCccccCEEEEECCEEEEEEEe
Confidence            8632211 11255667786 555444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.80  E-value=0.82  Score=43.17  Aligned_cols=236  Identities=11%  Similarity=0.079  Sum_probs=119.7

Q ss_pred             EEEccCCCEEEEEe-CC----CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041           11 TSFSPALDYFAICS-GD----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fspdg~~lasg~-~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .++||||+++|.+- .+    ..|+++|+.+|+.+...-.                   ......+.|.+.         
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-------------------~~~~~~~~W~~D---------  181 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------------RVKFSCMAWTHD---------  181 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------------------EECSCCEEECTT---------
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-------------------cccccceEEcCC---------
Confidence            47899999998542 22    4699999999987642110                   111234556554         


Q ss_pred             CcEEEEEECC----------------CeEEEEEccCCeEEE-EecCCC--CCCEEEEEEccCCCEEEEEe---CCCc--E
Q 008041           86 SSLLVLGTGG----------------GDVLALAVSAGQLKW-RLSDCH--PGGVSAISFATHGSCIYSAG---ADGM--V  141 (579)
Q Consensus        86 ~~~l~~~~~~----------------g~i~iwd~~~~~~~~-~~~~~h--~~~V~~l~~~~~~~~l~s~~---~d~~--v  141 (579)
                      +..|+....+                ..|..|.+.+..... .+....  ...+..+..++++++++...   .+..  +
T Consensus       182 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~  261 (430)
T d1qfma1         182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL  261 (430)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred             CCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEE
Confidence            3334333221                247788777653211 111222  23467788899999965432   2333  3


Q ss_pred             EEEeCCCCc--------eeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee--eEEe-ecCCCCEEEE
Q 008041          142 CEIDPLTGS--------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKF-SGHPGAVRFM  205 (579)
Q Consensus       142 ~iwd~~~~~--------~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~--~~~~-~~h~~~v~~l  205 (579)
                      ...|+....        ....+......+.-+. +.++.+++...     +.|...++.....  ...+ ..+...+..-
T Consensus       262 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~  340 (430)
T d1qfma1         262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW  340 (430)
T ss_dssp             EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEE
T ss_pred             EEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeee
Confidence            444543221        1122222222333322 33344444443     5677777765432  2333 3455556554


Q ss_pred             EEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEE-EEE-Ec--CCeEEEE
Q 008041          206 TFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV-LAI-SE--TGVCYIW  279 (579)
Q Consensus       206 ~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~-~~--dg~i~iw  279 (579)
                      .+...+.+|+..-..++  .|.++++.++...   .+.  ..+...+......     ++...+ ++- |.  =.+++-|
T Consensus       341 ~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~---~~~--~~~~~sv~~~~~~-----~~~~~~~~~~ss~~tP~~~y~~  410 (430)
T d1qfma1         341 VACVRSNFLVLCYLHDVKNTLQLHDLATGALL---KIF--PLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGIIYHC  410 (430)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEETTTCCEE---EEE--CCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEEEEE
T ss_pred             EEEEECCEEEEEEEcCCEeEEEEEECCCCcEE---Eec--CCCCceEeeccCC-----CCCCEEEEEEcCCCCCCeEEEE
Confidence            55555566766543454  5888998876533   121  1222222323222     333333 222 22  3688889


Q ss_pred             EcCCce
Q 008041          280 YGQNIE  285 (579)
Q Consensus       280 d~~~~~  285 (579)
                      |+.+++
T Consensus       411 Dl~t~~  416 (430)
T d1qfma1         411 DLTKEE  416 (430)
T ss_dssp             ETTSSS
T ss_pred             ECCCCC
Confidence            988875

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.68  E-value=0.75  Score=41.85  Aligned_cols=192  Identities=14%  Similarity=0.185  Sum_probs=107.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      +..+++....++=|.+||+. |+.+..+..  +.++.+-.               ..-++...+      ...+++++..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDv---------------r~~~~l~~~------~~di~vasnR   94 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDI---------------RYDFPLNGK------KVDIAAASNR   94 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEE---------------EEEEEETTE------EEEEEEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCcccc---------------ccccccCCc------ceEEEEEeCC
Confidence            44566655666569999985 777766532  11111100               000000100      2234555532


Q ss_pred             ----CeEEEEEccCC-eEEEEecCC------CCCCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC---CC----ceee
Q 008041           96 ----GDVLALAVSAG-QLKWRLSDC------HPGGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL---TG----SLLG  153 (579)
Q Consensus        96 ----g~i~iwd~~~~-~~~~~~~~~------h~~~V~~l~~--~~~-~~-~l~s~~~d~~v~iwd~~---~~----~~~~  153 (579)
                          ..|.+|.+... ..+..+...      -...+.++|+  ++. |. +++....+|.+..|.+.   .+    +.++
T Consensus        95 ~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr  174 (353)
T d1h6la_          95 SEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR  174 (353)
T ss_dssp             CTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE
T ss_pred             cCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee
Confidence                24778877532 222222111      1124677777  554 44 45666788999888763   23    3455


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-----CeeeEEeec--CCCCEEEEEEec--CCC-EEEEEecCC
Q 008041          154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NGK-YVLSSAVGE  221 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-----~~~~~~~~~--h~~~v~~l~~s~--~~~-~l~s~~~~d  221 (579)
                      +|.. ...+..+.++++...|..+-  .-|+.++...     +..+....+  ....+-.|+...  ++. ||++++..+
T Consensus       175 ~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         175 AFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            5653 45788999999888888887  3445555431     222322222  356778887653  333 888877789


Q ss_pred             CeEEEEEcCCC
Q 008041          222 RYIALWRTDGV  232 (579)
Q Consensus       222 ~~i~vwd~~~~  232 (579)
                      ++..+||....
T Consensus       254 n~f~vydr~~~  264 (353)
T d1h6la_         254 SSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEESSTT
T ss_pred             CeEEEEecCCC
Confidence            99999998764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.63  E-value=0.15  Score=47.49  Aligned_cols=146  Identities=13%  Similarity=0.115  Sum_probs=87.4

Q ss_pred             CcEEEEEECC-----C------eEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCce
Q 008041           86 SSLLVLGTGG-----G------DVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGAD-GMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~-----g------~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~~v~iwd~~~~~~  151 (579)
                      +++++.|+.+     +      .+.+||+.++....  .....|.....+..+.++|+.++.|+.+ ..+.+||..+..-
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            6677777742     1      27799999876421  1223344444566788999998888655 5899999877654


Q ss_pred             eeE--eecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEee---------cCC-----CCEEEEEE
Q 008041          152 LGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFS---------GHP-----GAVRFMTF  207 (579)
Q Consensus       152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~~~~---------~h~-----~~v~~l~~  207 (579)
                      ...  +.. ...-.+.+..+||++++.++        +.+.+||..+.+-...-.         .+.     ..-..+..
T Consensus       111 ~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (387)
T d1k3ia3         111 IPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG  189 (387)
T ss_dssp             EECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE
T ss_pred             cccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEE
Confidence            322  111 12335677788999999986        368999998875322100         000     00111233


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041          208 SDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       208 s~~~~~l~s~~~~d~~i~vwd~~~~~  233 (579)
                      .++|+.++.++ .++.+.+++.....
T Consensus       190 ~~~G~~~~~g~-~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         190 WKKGSVFQAGP-STAMNWYYTSGSGD  214 (387)
T ss_dssp             CGGGCEEECCS-SSEEEEEECSTTCE
T ss_pred             eCCCCEEEecC-cCCcEEecCcccCc
Confidence            45666666654 45666666666553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.25  E-value=1.1  Score=40.83  Aligned_cols=199  Identities=14%  Similarity=0.175  Sum_probs=105.9

Q ss_pred             ceEEeeec-ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc----CC--CEEEEEeC--C-
Q 008041           69 TCMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT----HG--SCIYSAGA--D-  138 (579)
Q Consensus        69 ~~~~w~~~-~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~----~~--~~l~s~~~--d-  138 (579)
                      ....|... +|.      .++++.....+-|++||+. |+.+..+.   .+.++.+..-.    ++  .-++.++.  + 
T Consensus        28 DPAIW~n~~~p~------~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~   97 (353)
T d1h6la_          28 DPAIWLDPKNPQ------NSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEG   97 (353)
T ss_dssp             EEEEECCSSCGG------GCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTT
T ss_pred             CceEEcCCCCcC------ccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCc
Confidence            34557654 343      4556666666669999986 66665542   34566555432    22  23555552  2 


Q ss_pred             -CcEEEEeCC-CCceeeEeecC-------CCCeeEEEE--ccC-CCEEEE-EC--CeEEEEEC---CCC----eeeEEee
Q 008041          139 -GMVCEIDPL-TGSLLGKFRAS-------TKGISCMAV--SSD-GKMLAT-AA--GQLKTFNC---SDH----KKMQKFS  196 (579)
Q Consensus       139 -~~v~iwd~~-~~~~~~~~~~~-------~~~v~~l~~--~p~-g~~l~~-~~--~~i~vwd~---~~~----~~~~~~~  196 (579)
                       .+|.+|.+. ....+..+...       ...++.+|+  +|. |.+.+. ..  |.+..|.+   ..+    +.+++|.
T Consensus        98 ~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~  177 (353)
T d1h6la_          98 KNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK  177 (353)
T ss_dssp             TCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred             ceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC
Confidence             357777764 22233333221       124666776  664 554433 33  77777755   333    3455664


Q ss_pred             cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-----cCceeEEeEEecCCcccCCCcEEEEEE
Q 008041          197 GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       197 ~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (579)
                       -...+..+.+.+....|+.+= ++.-|..++...........+....     ....-+....-+     ....+|++.+
T Consensus       178 -~~~q~EGCVvDde~~~LyisE-E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~-----~~~GylivSs  250 (353)
T d1h6la_         178 -MNSQTEGMAADDEYGSLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA-----DGKGYLLASS  250 (353)
T ss_dssp             -CSSCEEEEEEETTTTEEEEEE-TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG-----GGCEEEEEEE
T ss_pred             -CCCccceEEEeCCCCcEEEec-CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC-----CCCeEEEEEc
Confidence             356788999999888888874 6665655555433221111221111     111222222222     1123555555


Q ss_pred             c-CCeEEEEEcCCc
Q 008041          272 E-TGVCYIWYGQNI  284 (579)
Q Consensus       272 ~-dg~i~iwd~~~~  284 (579)
                      + +++..+||.++.
T Consensus       251 QG~n~f~vydr~~~  264 (353)
T d1h6la_         251 QGNSSYAIYERQGQ  264 (353)
T ss_dssp             GGGTEEEEEESSTT
T ss_pred             CCCCeEEEEecCCC
Confidence            4 889999997654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.13  E-value=1.7  Score=42.68  Aligned_cols=79  Identities=20%  Similarity=0.431  Sum_probs=52.3

Q ss_pred             CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecCCC-EE
Q 008041          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGK-YV  214 (579)
Q Consensus       139 ~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~-~l  214 (579)
                      |.+.-+|+.+|+.+..+..+. ++..-.++-.|.++++|+  |.++.+|.++|+.+.++.-.... -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578889999998888776433 222212334566777777  89999999999999888632211 11256777885 55


Q ss_pred             EEEe
Q 008041          215 LSSA  218 (579)
Q Consensus       215 ~s~~  218 (579)
                      ++.+
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.91  Score=39.74  Aligned_cols=173  Identities=9%  Similarity=-0.044  Sum_probs=75.3

Q ss_pred             eEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceeeEeecCCC-CeeEEEEc
Q 008041           97 DVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGM-----VCEIDPLTGSLLGKFRASTK-GISCMAVS  168 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----v~iwd~~~~~~~~~~~~~~~-~v~~l~~~  168 (579)
                      .+.+||+.+......-  ...... -.++.+  +++.++.++.++.     +..+|..+..-...-..... .-.+....
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~-~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  147 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  147 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             hhhhcccccccccccccccceecc-eecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee
Confidence            4888998887654211  111111 122222  5555555543333     44566655432221111111 11122222


Q ss_pred             cCCCEEEEEC-------CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCcccc
Q 008041          169 SDGKMLATAA-------GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKKQS  236 (579)
Q Consensus       169 p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d----~~i~vwd~~~~~~~~  236 (579)
                       ++..++.|+       ..+..||..+.+....-.. ......+... .++..++.++...    .....+|..+.+.. 
T Consensus       148 -~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~-  224 (288)
T d1zgka1         148 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWT-  224 (288)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE-
T ss_pred             -eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeee-
Confidence             455666655       3688899877654321111 1111112222 2344555544211    24566776665422 


Q ss_pred             ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  284 (579)
                        .+...........++ .      .+++.++.|+.++     .+.+||+.+.
T Consensus       225 --~~~~~p~~r~~~~~~-~------~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         225 --FVAPMKHRRSALGIT-V------HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             --ECCCCSSCCBSCEEE-E------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             --cccCccCcccceEEE-E------ECCEEEEEecCCCCeecceEEEEECCCC
Confidence              111111111111222 2      3567777776543     4677887654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.86  E-value=1.3  Score=40.04  Aligned_cols=138  Identities=12%  Similarity=0.065  Sum_probs=83.4

Q ss_pred             CCeEEEEEccCCeEEEE---ecCCC----CCCEEEEEE--ccCCCE-EEEEe---CCCcEEEEeCCCCce-e---eEeec
Q 008041           95 GGDVLALAVSAGQLKWR---LSDCH----PGGVSAISF--ATHGSC-IYSAG---ADGMVCEIDPLTGSL-L---GKFRA  157 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~---~~~~h----~~~V~~l~~--~~~~~~-l~s~~---~d~~v~iwd~~~~~~-~---~~~~~  157 (579)
                      .|.|.++|+.+.+....   +....    .-...++..  .++|.. |++..   ...+|.+|++..... .   .++..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            48899999876543211   11111    123455554  445654 55543   456788888754321 1   22222


Q ss_pred             C-CCCeeEEEEccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041          158 S-TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       158 ~-~~~v~~l~~~p~g~~l~~~~-----------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  219 (579)
                      . ....+.+++..+|.++++-.                 +...+|..+.++.. .....-...+.|+++||+++|+.+..
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeC
Confidence            2 23678999999999888832                 13344444444332 22223356789999999998888877


Q ss_pred             CCCeEEEEEcCCCc
Q 008041          220 GERYIALWRTDGVK  233 (579)
Q Consensus       220 ~d~~i~vwd~~~~~  233 (579)
                      ..+.|++|++....
T Consensus       226 ~~~~i~~y~~~~~~  239 (340)
T d1v04a_         226 LAHKIHVYEKHANW  239 (340)
T ss_dssp             GGTEEEEEEECTTS
T ss_pred             CCCeEEEEEeCCCc
Confidence            78899999997654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.96  E-value=2.1  Score=38.64  Aligned_cols=130  Identities=8%  Similarity=-0.011  Sum_probs=73.2

Q ss_pred             EEEEEEC---CCeEEEEEccCCe--EE--EEecCCCCCCEEEEEEccCCCEEEEEe--C-------------CCcEEEEe
Q 008041           88 LLVLGTG---GGDVLALAVSAGQ--LK--WRLSDCHPGGVSAISFATHGSCIYSAG--A-------------DGMVCEID  145 (579)
Q Consensus        88 ~l~~~~~---~g~i~iwd~~~~~--~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~--~-------------d~~v~iwd  145 (579)
                      +|++...   ...|.+|++....  ..  ..+........+++.+..+|..++|-.  .             -+...+|.
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            4555443   3458888876432  22  122223335588999999998777631  0             02233343


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEe
Q 008041          146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~  218 (579)
                      ...++. ......-...+.|+++||+++++++.   +.|++|++.....+..  ...-.+..-.+.+.+.+..+.+++
T Consensus       193 ~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         193 YSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             ECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            333333 22222234678999999999988886   7999999875433221  112234456677776433334443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.53  E-value=3  Score=38.98  Aligned_cols=191  Identities=8%  Similarity=0.034  Sum_probs=99.6

Q ss_pred             CcEEEE-EECCCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----------------CcEEEE
Q 008041           86 SSLLVL-GTGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----------------GMVCEI  144 (579)
Q Consensus        86 ~~~l~~-~~~~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----------------~~v~iw  144 (579)
                      +.+++. -+.+|.    ++++|+.+++.+......  .....+.|.+|++.|+....|                ..|..+
T Consensus       136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h  213 (430)
T d1qfma1         136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (430)
T ss_dssp             SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence            555554 444554    999999999976443321  112467899999987655432                257888


Q ss_pred             eCCCCce--eeEeecCC--CCeeEEEEccCCCEEEEEC-----Ce--EEEEECCCCe--------eeEEeecCCCCEEEE
Q 008041          145 DPLTGSL--LGKFRAST--KGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHK--------KMQKFSGHPGAVRFM  205 (579)
Q Consensus       145 d~~~~~~--~~~~~~~~--~~v~~l~~~p~g~~l~~~~-----~~--i~vwd~~~~~--------~~~~~~~h~~~v~~l  205 (579)
                      .+.+...  +..+....  ..+..+..++++++++...     +.  +.+.|.....        ....+......... 
T Consensus       214 ~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (430)
T d1qfma1         214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-  292 (430)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-
T ss_pred             ECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEE-
Confidence            8776532  23344333  3466778899999876432     23  4455554321        11222222333332 


Q ss_pred             EEecCCCEEEEEec--CCCeEEEEEcCCCccccceeeeeeecCc--eeEEeEEecCCcccCCCcEEEEEEcCC--eEEEE
Q 008041          206 TFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIW  279 (579)
Q Consensus       206 ~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iw  279 (579)
                      ..+.++.+++.+..  .++.|...++..........  .+..+.  .......+      .++.+++....++  .|+++
T Consensus       293 ~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~--vi~~~~~~~~~~~~~~------~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACV------RSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEE--EECCCSSCEEEEEEEE------TTTEEEEEEEETTEEEEEEE
T ss_pred             EecCCceeecccCcccccceeEEecCCCCccccceE--EecccCcceeeeEEEE------ECCEEEEEEEcCCEeEEEEE
Confidence            22333334443321  13566666766544322122  222222  22233333      2333444445665  68889


Q ss_pred             EcCCceee
Q 008041          280 YGQNIEEL  287 (579)
Q Consensus       280 d~~~~~~~  287 (579)
                      +..++...
T Consensus       365 ~~~~~~~~  372 (430)
T d1qfma1         365 DLATGALL  372 (430)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEE
Confidence            98777543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.35  E-value=10  Score=34.36  Aligned_cols=140  Identities=8%  Similarity=0.048  Sum_probs=81.1

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeCC----------CCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECC
Q 008041          119 GVSAISFATHGSCIYSAGADGMVCEIDPL----------TGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~----------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~  187 (579)
                      ...-++.++...+++.|+.++ +++..+.          .+.. ...+..-..|..++|+.+  .++... +.+..++..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~-~~~~~~ip~v~~vafs~d--~l~v~~~~~l~~~~~~  113 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT-FKWEKEIPDVIFVCFHGD--QVLVSTRNALYSLDLE  113 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC-CSEEEECTTEEEEEEETT--EEEEEESSEEEEEESS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCc-ceeccCCCCeEEEEeeCC--EEEEEeCCCEEEEEee
Confidence            455677777777788777775 5566532          1111 111111236888999744  444444 788888887


Q ss_pred             CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce-eeeeeecCceeEEeEEecCCcccCCCcE
Q 008041          188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLY  266 (579)
Q Consensus       188 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      +-........-..++.++.++|..  ++... .++.+.++++...+..... .+....-. ....+++|+     +.|..
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~~--~~l~~-~~~~~~~~~l~~~~~~~~~~~v~~~~~~-~~~~~v~ws-----~kgkq  184 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNNT--LVILN-SVNDLSALDLRTKSTKQLAQNVTSFDVT-NSQLAVLLK-----DRSFQ  184 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSE--EEEEE-TTSEEEEEETTTCCEEEEEESEEEEEEC-SSEEEEEET-----TSCEE
T ss_pred             ccccccccccccccccceecCCce--eEEEe-cCCCEEEEEeccCccccccCCcceEEec-CCceEEEEe-----CCcEE
Confidence            655444444456678888888764  33344 5889999999887532100 00011111 223456665     67777


Q ss_pred             EEEEE
Q 008041          267 VLAIS  271 (579)
Q Consensus       267 l~~~~  271 (579)
                      ++++.
T Consensus       185 ~v~~~  189 (381)
T d1xipa_         185 SFAWR  189 (381)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            77764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=11  Score=34.24  Aligned_cols=125  Identities=6%  Similarity=-0.037  Sum_probs=71.8

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----cCCCCee
Q 008041           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTKGIS  163 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~  163 (579)
                      +++ ..++.+..++...-...... ..-..++.++.++|.  .++....++.+.++++..++......     .-.+.+.
T Consensus        99 l~v-~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_          99 VLV-STRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEE-EESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EEE-EeCCCEEEEEeecccccccc-ccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            444 45566777777653222111 123457888888775  56667789999999998886433221     1235678


Q ss_pred             EEEEccCCCEEEEECCe-EEEE-ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041          164 CMAVSSDGKMLATAAGQ-LKTF-NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~~~-i~vw-d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  217 (579)
                      +++|++.|+.++++.|. ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       175 ~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         175 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            88888888888777632 2211 111111110011234567888888766665544