Citrus Sinensis ID: 008045

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
ccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHcccccccccccccccccEEEccccEEEEccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHccccccccccccc
ccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccEEEccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHEHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHccccEEcccccccccccccccccccccHHccccccccEEEHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccccccccccc
meaiyfiqptKENVVAFLsdmsgksplykKAFVFFSSPISRELVTHikkdstvlprigALREMNLEyfavdsqgfvtddERALEElfgdeessqKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQtiqnfpmsetCELLILDRSVDQIAPIIHEWTYDAICHDLLnlegnkyvhevpsktdgppekkevlleEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAqiqngsrdgsnlstRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASiypekfegekglnLMKLAKLTADDMTAVNNMRLLGgaleskkstigafSLKFDIHKKKRAarkdrsggeetwqlsRFYPMIEELVEKLgknelskddypcmndpsptfhgttpsaltnevpaahsmrsrrtptwarprssddgyssdsvLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREvvlgssslddppqFITKLKMLTAhelslddiqi
meaiyfiqptkenVVAFLSDMSGKSPLYKKAFVFFSSPISRElvthikkdstvlpRIGALREMNLEYFAVDSQGFVTDDERALEELfgdeessqkADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHevpsktdgppeKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAaqiqngsrdgsnlstRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLtakeditrenKLRLLMIVASIypekfegekglNLMKLAKLTADDMTAVNNMRLLGgaleskkstigafslkfdihkkkraarkdrsggeetwqlsrfyPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTnevpaahsmrsrrtptwarprssddgyssDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKlnrevvlgssslddpPQFITKLKMLTahelslddiqi
MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
***IYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERAL************ADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVH***************LLEEHDPIWVELRHAHIAD**************************************LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIH***************TWQLSRFYPMIEELVE************************************************************************KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGS********FITKLKMLT***********
MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAK*********FRDLVPTKLAAGVW*****************TCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKY******************LEEHDPIWVELRHAHIADASERLHEKMTG***********************DLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLL*************************************WQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPS**********************************************************IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITK****************
MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEEL********KADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHE*********EKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHK**************TWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEV****************************VLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQ*********NLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESK**************************GEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDP******************************************************KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLT***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query579 2.2.26 [Sep-21-2011]
Q9C5X3666 SNARE-interacting protein yes no 0.996 0.866 0.792 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.989 0.865 0.713 0.0
Q9C5P7673 Protein transport Sec1a O no no 0.970 0.835 0.694 0.0
Q7XWP3665 Probable protein transpor yes no 0.994 0.866 0.681 0.0
Q5VNU3659 Probable protein transpor yes no 0.975 0.857 0.629 0.0
Q54QC8598 Protein transport protein yes no 0.879 0.851 0.286 4e-56
Q64324593 Syntaxin-binding protein yes no 0.851 0.831 0.270 2e-51
Q28288593 Syntaxin-binding protein yes no 0.873 0.853 0.268 9e-50
Q6R748594 Syntaxin-binding protein yes no 0.867 0.845 0.274 3e-49
Q15833593 Syntaxin-binding protein yes no 0.868 0.848 0.267 3e-49
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/583 (79%), Positives = 532/583 (91%), Gaps = 6/583 (1%)

Query: 1   MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 60
           M+AIYFIQPTKENV+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV HIKKDS+VLPRIGAL
Sbjct: 86  MDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGAL 145

Query: 61  REMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLV 120
           REMNLE+FA+DSQGF+TD ERALE+LFGDEE+S+K DACLNVMA+RIATVFASLREFP V
Sbjct: 146 REMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAV 205

Query: 121 RYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQI 180
           RYRAAKSLDA T+TT RDL+PTKLAAG+WNCL K+KQ+I+NFP +ETCELLILDRS+DQI
Sbjct: 206 RYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQI 265

Query: 181 APIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD 240
           AP+IHEWTYDA+CHDLLN+EGNKYVH +PSK+ G PEKK+VLLEEHDPIW+ELRHAHIAD
Sbjct: 266 APVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIAD 325

Query: 241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIA 300
           ASERLH+KMT F+SKNKAAQ+Q G RDG+ LSTRDLQK+VQALPQYSEQIDKLSLHVEIA
Sbjct: 326 ASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIA 384

Query: 301 GKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPE 360
            K+N +IRE GLRELGQLEQDLVFGDAG KDVIK+L+ +E+ +RE KLRLLMI+A+IYPE
Sbjct: 385 RKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPE 444

Query: 361 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 420
           KFEGEKG NLMKLAKL++DDMTAVNNM LLG A+++KK+T G F+LKFD+HKKKRA RK+
Sbjct: 445 KFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKE 504

Query: 421 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHG---TTPSALTNEVP 477
           R   E  WQLSRFYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG    + +A +++  
Sbjct: 505 RQ-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQ 563

Query: 478 AAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCH 537
           AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGG TRSEL+VCH
Sbjct: 564 AAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCH 623

Query: 538 KLTAKLNREVVLGSSSLDDPPQFITKLKMLTAH-ELSLDDIQI 579
           KL+ KL REV+LGS+SLDDPPQFITKLK+LTA+ +LSLDD+QI
Sbjct: 624 KLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query579
224125086666 predicted protein [Populus trichocarpa] 1.0 0.869 0.834 0.0
224071599666 predicted protein [Populus trichocarpa] 1.0 0.869 0.825 0.0
356514152665 PREDICTED: SNARE-interacting protein KEU 1.0 0.870 0.806 0.0
449442403664 PREDICTED: SNARE-interacting protein KEU 1.0 0.871 0.813 0.0
356563274666 PREDICTED: SNARE-interacting protein KEU 1.0 0.869 0.803 0.0
255537107663 plant sec1, putative [Ricinus communis] 0.996 0.870 0.818 0.0
356563276671 PREDICTED: SNARE-interacting protein KEU 0.998 0.861 0.798 0.0
357477033666 SNARE-interacting protein KEULE [Medicag 0.998 0.867 0.791 0.0
297844098665 hypothetical protein ARALYDRAFT_471384 [ 0.996 0.867 0.788 0.0
225448938 753 PREDICTED: SNARE-interacting protein KEU 0.998 0.767 0.800 0.0
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/580 (83%), Positives = 536/580 (92%), Gaps = 1/580 (0%)

Query: 1   MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 60
           M+AIYFIQPTKENV+ FLSDMSGKSPLYKKAFVFFSSPISRELV+HIKKDS+VL RIGAL
Sbjct: 87  MDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPISRELVSHIKKDSSVLTRIGAL 146

Query: 61  REMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLV 120
           REMNLEYFA+DSQGF+TD+ERALEELF DEE S+K DACLNVMA+RIATVFASLREFP V
Sbjct: 147 REMNLEYFAIDSQGFITDNERALEELFVDEEDSRKGDACLNVMASRIATVFASLREFPFV 206

Query: 121 RYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQI 180
           RYRAAKSLD  T+TTFRDL+PTKLAA +W+CL++YKQ  ++FP +ETCELLILDRS+DQI
Sbjct: 207 RYRAAKSLDVTTMTTFRDLIPTKLAARIWDCLIQYKQKTEHFPQTETCELLILDRSIDQI 266

Query: 181 APIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD 240
           APIIHEWTYDA+CHDLLN+EGNKYVHEV SK  GPPEKK+VLLEEHDP+W+ELRHAHIAD
Sbjct: 267 APIIHEWTYDAMCHDLLNMEGNKYVHEVLSKAGGPPEKKDVLLEEHDPVWLELRHAHIAD 326

Query: 241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIA 300
           ASERLHEKMT FVSKNKAA+IQ+GSRDG  LSTRDLQ++VQALPQYSEQIDK+SLHVEIA
Sbjct: 327 ASERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALPQYSEQIDKISLHVEIA 386

Query: 301 GKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPE 360
           GKINRIIRE+GLRELGQLEQDLVFGDAG  DVIKFLT KED TRENKLRLLMI+A+IYPE
Sbjct: 387 GKINRIIRESGLRELGQLEQDLVFGDAGMTDVIKFLTTKEDATRENKLRLLMILAAIYPE 446

Query: 361 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 420
           KFEGE+G N+MK+ +L  DDM AVNNMRLL  A E+KKS+ GAFSLKFDIHKKKRAARKD
Sbjct: 447 KFEGEEGHNIMKVVRLPQDDMNAVNNMRLLAVASETKKSSTGAFSLKFDIHKKKRAARKD 506

Query: 421 RSGGEE-TWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAA 479
           R+G EE TWQLSRFYPMIEEL++KL K ELSKD+YPCMNDPSPTFHGT+ S   ++ PA 
Sbjct: 507 RTGAEETTWQLSRFYPMIEELIDKLNKGELSKDEYPCMNDPSPTFHGTSQSTPMHQAPAP 566

Query: 480 HSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL 539
           HSMRSRRTPTWARPR+SDDGYSSDSVL+HASSDFKKMGQRIFVFIVGG TRSELRVCHKL
Sbjct: 567 HSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKL 626

Query: 540 TAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI 579
           T+KL REV+LGSSSLDDPP FITKLK+LTA+ELSLDD+QI
Sbjct: 627 TSKLQREVILGSSSLDDPPHFITKLKLLTANELSLDDLQI 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|449442403|ref|XP_004138971.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] gi|449505029|ref|XP_004162356.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255537107|ref|XP_002509620.1| plant sec1, putative [Ricinus communis] gi|223549519|gb|EEF51007.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297844098|ref|XP_002889930.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] gi|297335772|gb|EFH66189.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query579
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.996 0.866 0.794 7.6e-254
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.993 0.868 0.716 2.1e-219
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.970 0.835 0.698 1.2e-214
ZFIN|ZDB-GENE-050626-106591 stxbp1a "syntaxin binding prot 0.744 0.729 0.3 7.8e-54
ZFIN|ZDB-GENE-060531-166605 stxbp1b "syntaxin binding prot 0.756 0.723 0.281 2e-53
UNIPROTKB|F1MHC2593 STXBP2 "Uncharacterized protei 0.737 0.720 0.288 3.3e-53
UNIPROTKB|F1SCI9594 STXBP2 "Syntaxin-binding prote 0.735 0.717 0.282 4.2e-53
ZFIN|ZDB-GENE-040426-2482595 stxbp2 "syntaxin binding prote 0.753 0.732 0.286 1.4e-52
UNIPROTKB|Q6R748594 STXBP1 "Syntaxin-binding prote 0.744 0.725 0.293 3.7e-52
UNIPROTKB|P61763594 STXBP1 "Syntaxin-binding prote 0.744 0.725 0.287 1.6e-51
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2444 (865.4 bits), Expect = 7.6e-254, P = 7.6e-254
 Identities = 463/583 (79%), Positives = 533/583 (91%)

Query:     1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 60
             M+AIYFIQPTKENV+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV HIKKDS+VLPRIGAL
Sbjct:    86 MDAIYFIQPTKENVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGAL 145

Query:    61 REMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLV 120
             REMNLE+FA+DSQGF+TD ERALE+LFGDEE+S+K DACLNVMA+RIATVFASLREFP V
Sbjct:   146 REMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAV 205

Query:   121 RYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQI 180
             RYRAAKSLDA T+TT RDL+PTKLAAG+WNCL K+KQ+I+NFP +ETCELLILDRS+DQI
Sbjct:   206 RYRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQI 265

Query:   181 APIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD 240
             AP+IHEWTYDA+CHDLLN+EGNKYVH +PSK+ G PEKK+VLLEEHDPIW+ELRHAHIAD
Sbjct:   266 APVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIAD 325

Query:   241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIA 300
             ASERLH+KMT F+SKNKAAQ+Q G RDG+ LSTRDLQK+VQALPQYSEQIDKLSLHVEIA
Sbjct:   326 ASERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIA 384

Query:   301 GKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPE 360
              K+N +IRE GLRELGQLEQDLVFGDAG KDVIK+L+ +E+ +RE KLRLLMI+A+IYPE
Sbjct:   385 RKLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPE 444

Query:   361 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 420
             KFEGEKG NLMKLAKL++DDMTAVNNM LLG A+++KK+T G F+LKFD+HKKKRA RK+
Sbjct:   445 KFEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKE 504

Query:   421 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTP---SALTNEVP 477
             R   E  WQLSRFYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG+T    +A +++  
Sbjct:   505 RQE-EAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQ 563

Query:   478 AAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCH 537
             AA SMRSRRTPTWA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGG TRSEL+VCH
Sbjct:   564 AAQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCH 623

Query:   538 KLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHE-LSLDDIQI 579
             KL+ KL REV+LGS+SLDDPPQFITKLK+LTA++ LSLDD+QI
Sbjct:   624 KLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050626-106 stxbp1a "syntaxin binding protein 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060531-166 stxbp1b "syntaxin binding protein 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHC2 STXBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCI9 STXBP2 "Syntaxin-binding protein 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2482 stxbp2 "syntaxin binding protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6R748 STXBP1 "Syntaxin-binding protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P61763 STXBP1 "Syntaxin-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZ77SEC1B_ARATHNo assigned EC number0.71350.98960.8655nono
Q7XWP3SEC1A_ORYSJNo assigned EC number0.68150.99480.8661yesno
Q5VNU3SEC1B_ORYSJNo assigned EC number0.62930.97580.8573yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.79240.99650.8663yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
pfam00995554 pfam00995, Sec1, Sec1 family 1e-125
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 8e-46
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  379 bits (975), Expect = e-125
 Identities = 160/569 (28%), Positives = 279/569 (49%), Gaps = 63/569 (11%)

Query: 1   MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 60
           + AIYFI+PT+ENV   + D+  K+P YK   +FF++ +SR L+  + + + V   +  +
Sbjct: 44  LPAIYFIRPTEENVDRIIDDL--KNPKYKSYHIFFTNSLSRSLLERLAE-ADVAELVKQV 100

Query: 61  REMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLV 120
           +E+ L++  ++S  F  +   +  +L+    S    ++ L  +A  + ++  +L E P++
Sbjct: 101 KEIYLDFIPLESDLFSLELPNSFRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPII 156

Query: 121 RYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMS-ETCELLILDRSVDQ 179
           RY+   S            +  KLA  +   L  +     + P S     LLILDRS+D 
Sbjct: 157 RYQG-NSAAER--------LAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDL 207

Query: 180 IAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIA 239
           I P++H+WTY A+ HDLL ++ N+    + +  +G   KKEV+L+E+DP WVE RH H  
Sbjct: 208 ITPLLHQWTYQAMVHDLLGIKNNRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFP 265

Query: 240 DASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEI 299
           D +E++ +++  +  +NK +  +         S  DL++ V+ LP++ ++  KLSLH+ +
Sbjct: 266 DVAEKIKKELKEYKEENKNSNKKK-------KSISDLKEFVEKLPEFQKEKGKLSLHLNL 318

Query: 300 AGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKF--LTAKEDITRENKLRLLMIVA-S 356
           A ++ + I+E  L ++ +LEQDL  G    K       L     +  E+KLRLL++ +  
Sbjct: 319 AEELMKQIKERKLDKVSELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLR 378

Query: 357 IYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRA 416
              +  + E    L+  A +  + +  V N+  LGG     +++   FS   D  K    
Sbjct: 379 DGGKGKDLEDLRKLLLHAGIGPEALNLVKNLEQLGG--LLSRTSGSNFSDLRDKLKLLVK 436

Query: 417 ARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEV 476
                        LSR+ P+++ ++E L K +L  D YP  +       G          
Sbjct: 437 EVSKSLPKGVKNVLSRYKPLLKRILEDLIKGKLDTDSYPYFDPKLANASGPQ-------- 488

Query: 477 PAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVC 536
               S+RS+R     + R                    +  QRI VF+VGG T SE R  
Sbjct: 489 ---GSLRSKRPTAAGQGR--------------------QPPQRIIVFVVGGVTYSEARAL 525

Query: 537 HKLTAKLN-REVVLGSSSLDDPPQFITKL 564
           ++L+ K N + V++GS+S+ +P  F+ +L
Sbjct: 526 YELSKKTNGKRVIIGSTSILNPESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 579
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-91  Score=728.60  Aligned_cols=509  Identities=42%  Similarity=0.679  Sum_probs=437.1

Q ss_pred             CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCCc
Q 008045            1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE   80 (579)
Q Consensus         1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~p   80 (579)
                      |+|||||+||.+||++++.||+...|+|+.+||||+..||+.+++.+.+ ..+...|+++++++++|+|+|+++|+++.|
T Consensus        67 meaIY~i~pt~~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~  145 (593)
T KOG1300|consen   67 MEAIYFITPTEESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSP  145 (593)
T ss_pred             ceeEEEecCchhhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecCh
Confidence            7899999999999999999997667899999999999999999999974 456788999999999999999999999999


Q ss_pred             chhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcC
Q 008045           81 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ  160 (579)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~  160 (579)
                      ++|..+|.+. +......+++.+|++|++||.++|++|.|||++.....|+       .+|+++|+++++.++.|+.+..
T Consensus       146 ~~~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as-------~l~~~va~~l~~~~~~~~~~~~  217 (593)
T KOG1300|consen  146 DAFLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNAS-------ELAQKVAAKLWDAYKAYKPSIG  217 (593)
T ss_pred             hhHHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHH-------HHHHHHHHHHHHHHHhcccccC
Confidence            9999999976 5666788999999999999999999999999988655542       6899999999999999987667


Q ss_pred             CCCCCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcchHHH
Q 008045          161 NFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD  240 (579)
Q Consensus       161 ~~~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~  240 (579)
                      ++|+.+++.|||+||++|+++|+||+||||||+||+++|++|+|.++.+...|++  +|+++|+++|++|.++||+||++
T Consensus       218 ~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIad  295 (593)
T KOG1300|consen  218 NGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIAD  295 (593)
T ss_pred             CCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHH
Confidence            7888789999999999999999999999999999999999999999987665533  78899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhH
Q 008045          241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQ  320 (579)
Q Consensus       241 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq  320 (579)
                      |.+.|.+.+++|.++++....     ..+..++.|+.+||++||+|+++..+++.|++||++|++.++. .|.+++.+||
T Consensus       296 vse~l~~~~k~f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQ  369 (593)
T KOG1300|consen  296 VSERLTKKMKNFSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQ  369 (593)
T ss_pred             HHHHHHHHHHHHHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999998764433     2335789999999999999999999999999999999999988 9999999999


Q ss_pred             hhhcCC-CchHHHH-------HHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 008045          321 DLVFGD-AGFKDVI-------KFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGG  392 (579)
Q Consensus       321 ~i~~~~-~~~~~~~-------e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~~lg~  392 (579)
                      ++++|. ...+.+.       +.+. ...+...||+|++++|.+. .+|+.+..+.+|+++.|++.++...+.++..+|.
T Consensus       370 DLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~  447 (593)
T KOG1300|consen  370 DLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGV  447 (593)
T ss_pred             HHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCC
Confidence            999994 3333333       3333 4678999999999999998 5899999999999999999999999999999998


Q ss_pred             cccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCCCCCC
Q 008045          393 ALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSAL  472 (579)
Q Consensus       393 ~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~  472 (579)
                      ....     +.|...|.     .+.++++. .+.+|.+|||+|.++.|+|++++++||++.|||+++++....|.     
T Consensus       448 ~~~~-----~~~~~k~~-----~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~-----  511 (593)
T KOG1300|consen  448 PVTK-----DSFLLKFD-----PPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS-----  511 (593)
T ss_pred             cccc-----CcccccCC-----CCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC-----
Confidence            7652     23333222     22255664 78899999999999999999999999999999998775211111     


Q ss_pred             CCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccC
Q 008045          473 TNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSS  552 (579)
Q Consensus       473 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT  552 (579)
                              ...++|++.|.+++...              .+...++++||||+||+||+|+|++|+++++.+++|+||||
T Consensus       512 --------~~~Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~  569 (593)
T KOG1300|consen  512 --------AATSARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSD  569 (593)
T ss_pred             --------ccccccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCc
Confidence                    11223334555433321              12357899999999999999999999999999999999999


Q ss_pred             cccChhHHHHHHhc
Q 008045          553 SLDDPPQFITKLKM  566 (579)
Q Consensus       553 ~i~~~~~fl~~l~~  566 (579)
                      +|+||.+||+.|+.
T Consensus       570 ~iltP~~fL~~lk~  583 (593)
T KOG1300|consen  570 HILTPTKFLDDLKL  583 (593)
T ss_pred             ccCCHHHHHHHHhh
Confidence            99999999999993

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 8e-52
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 2e-49
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 2e-49
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 1e-47
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-44
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 1e-43
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 3e-17
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  201 bits (511), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 162/582 (27%), Positives = 290/582 (49%), Gaps = 74/582 (12%)
Query: 1   MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
           +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K ST    I  
Sbjct: 68  LEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKT 126
Query: 60  LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 119
           L+E+N+ +   +SQ F  D     + ++ +   +Q         A +IAT+ A+L E+P 
Sbjct: 127 LKEINIAFLPYESQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPS 185
Query: 120 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRS 176
           VRYR+    +A    +F  LV  KL A        Y+    T+   P  +  +LLILDR 
Sbjct: 186 VRYRSDFDENA----SFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRG 233
Query: 177 VDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236
            D I+P++HE T+ A+ +DLL +E + Y + V +  +  PE KEVLL+E D +WVE+RH 
Sbjct: 234 FDPISPLLHELTFQAMAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEMRHQ 291
Query: 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLH 296
           HIA  S+ + +K+  F  + +     + +        +DL ++++ +PQY +++ K S H
Sbjct: 292 HIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTH 345
Query: 297 VEIAGKINRIIRETGLRELGQLEQDLVFG-DAG-------FKDVIKFLTAKEDITRENKL 348
           + +A    +  ++  + +L ++EQDL  G DA         ++++  L  ++ I+  +K+
Sbjct: 346 LHLAEDCMKQYQQH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQK-ISAYDKI 403
Query: 349 RLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKF 408
           R++++   I+      E    L++ A + A++   +N+M+ LG  +       G   +  
Sbjct: 404 RIILLYI-IHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG---GRRKIPQ 459
Query: 409 DIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468
             H   R  R+     + T+Q+SR+ P +++++E   +++L    YP +N   P      
Sbjct: 460 PYHTHNRKERQ----ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR----- 510
Query: 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGT 528
                   P+     S R   W +    D G +S            K G R+ +F+VGG 
Sbjct: 511 --------PSCQQPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGI 547
Query: 529 TRSELRVCHKL--TAKLNREVVLGSSSLDDPPQFITKLKMLT 568
           + SE+R  +++  TAK N EV+LGS+ +  P   +  L+ ++
Sbjct: 548 SYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-110
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 1e-93
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 4e-93
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 2e-90
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 6e-90
1y9j_A159 SEC1 family domain containing protein 1; membrane 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  343 bits (880), Expect = e-110
 Identities = 125/587 (21%), Positives = 270/587 (45%), Gaps = 43/587 (7%)

Query: 1   MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 60
              +YFI+PT+EN+   + D + ++P Y+ A +FF SP+   L+  +   +  +  +  L
Sbjct: 68  FHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLAS-AKAVKYVKTL 126

Query: 61  REMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLV 120
           +E+N  +   + + F  ++   L + +G   SS      ++ +  R++T+  ++   P+V
Sbjct: 127 KEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSS----YNIDHLVRRLSTLCTTMNVAPIV 182

Query: 121 RYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQI 180
           RY +  +     +      +  ++   V   L+  ++           + LILDR+VD  
Sbjct: 183 RYSSTSTPGTERMA---MQLQKEIDMSVSQGLINAREG------KLKSQFLILDRAVDLK 233

Query: 181 APIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD 240
           +P++HE TY A  +DLLN+E + Y +       G  ++++V+L E D IW+++RH HI++
Sbjct: 234 SPLVHELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDIWLQMRHLHISE 292

Query: 241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIA 300
              ++      F    +  Q    S+ G       L+++++ LPQ+ EQ+ K SLH++++
Sbjct: 293 VFRKVKSSFDEFCVSARRLQGLRDSQQGEG-GAGALKQMLKDLPQHREQMQKYSLHLDMS 351

Query: 301 GKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKF-------LTAKEDITRENKLRLLMI 353
             IN     + +    + EQ++V  +    + ++        +     ++ E+KLR LM+
Sbjct: 352 NAINMAF-SSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLML 410

Query: 354 VASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKK 413
              +        +  NL+  A +     +A+ N+ +LG  + + +             + 
Sbjct: 411 -CVLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR-------------RG 456

Query: 414 KRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALT 473
           ++     R   +  + LSR+ P++++L+E +   +L  + YP + D          S   
Sbjct: 457 RKPKTMKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSV 516

Query: 474 NEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLK-----HASSDFKKMGQRIFVFIVGGT 528
            E     +  +R+   WA+ + ++    S           A+   +    ++FVFI G  
Sbjct: 517 EEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTV 576

Query: 529 TRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLD 575
           + +E+R  ++++     EV +G+ ++  P +F+  + +L   +  + 
Sbjct: 577 SYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKADQDVQ 623
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query579
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.31
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=1.2e-94  Score=800.54  Aligned_cols=506  Identities=28%  Similarity=0.525  Sum_probs=412.3

Q ss_pred             CcEEEEecCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCC
Q 008045            1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDD   79 (579)
Q Consensus         1 ~~aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~   79 (579)
                      |+|||||+||.+||++|++||++ ..|+|++|||+|++.+|+.+++.||+ .++.+.|++|.|+++||+|+|+++|||++
T Consensus        71 ~~aIYfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~  149 (594)
T 1dn1_A           71 LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDS  149 (594)
T ss_dssp             SEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCC
T ss_pred             CceEEEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecC
Confidence            68999999999999999999974 23799999999999999999999996 56889999999999999999999999999


Q ss_pred             cchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhc
Q 008045           80 ERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTI  159 (579)
Q Consensus        80 p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~  159 (579)
                      |++|..+|.++.+ .+....++.+|++|+++|.++|.+|.|||+|+.            ..|+++|+.|++.|.++...+
T Consensus       150 p~~f~~l~~~~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~  216 (594)
T 1dn1_A          150 ADSFQSFYSPHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADD  216 (594)
T ss_dssp             TTHHHHHHCGGGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchHHHHhCCccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccC
Confidence            9999999995432 234789999999999999999999999998773            246789999998898876554


Q ss_pred             CCCC---CCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcc
Q 008045          160 QNFP---MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA  236 (579)
Q Consensus       160 ~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~  236 (579)
                      +.++   ..++++|||+||++|++|||+||||||||+||+|||++|.|+++.+.  .+..++|++.|+++|++|.++||+
T Consensus       217 ~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~  294 (594)
T 1dn1_A          217 PTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHK  294 (594)
T ss_dssp             TTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTS
T ss_pred             ccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhcc
Confidence            4432   23478999999999999999999999999999999999999998632  122346889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045          237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG  316 (579)
Q Consensus       237 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~  316 (579)
                      ||++|+..|.+++++|+++++..       ..+..+++||++||++||+++++++.+++|++||++|++.+++ .|++++
T Consensus       295 ~f~~v~~~l~~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~  366 (594)
T 1dn1_A          295 HIAEVSQEVTRSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLC  366 (594)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            99999999999999999875421       0235677899999999999999999999999999999999987 899999


Q ss_pred             HHhHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045          317 QLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR  388 (579)
Q Consensus       317 ~~Eq~i~~~~~~--------~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~  388 (579)
                      ++||++++|.+.        .+.+.++|. +..++..|||||+|||++++ +|++++++.+|++++|++++++.++.||+
T Consensus       367 e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~  444 (594)
T 1dn1_A          367 RVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMA  444 (594)
T ss_dssp             HHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGG
T ss_pred             HHHHHHHcCCCcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999998642        134566776 57899999999999999997 69999999999999999999999999999


Q ss_pred             HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045          389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT  468 (579)
Q Consensus       389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~  468 (579)
                      ++|+...++..       .   .|.+.+.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+  
T Consensus       445 ~lG~~~~~~~~-------~---~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~--  511 (594)
T 1dn1_A          445 HLGVPIVTDST-------L---RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS--  511 (594)
T ss_dssp             GGTCCCBCCCG-------G---GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------
T ss_pred             HhCCccccccc-------c---ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc--
Confidence            99987543211       0   11222333332 57899999999999999999999999999999999765421100  


Q ss_pred             CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhC-CCeE
Q 008045          469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREV  547 (579)
Q Consensus       469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~-~~~i  547 (579)
                                 .+..+.|+|+|++.+.+.+               ..+++++||||+||+||+|+|++|++++.. |++|
T Consensus       512 -----------~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~V  565 (594)
T 1dn1_A          512 -----------TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEV  565 (594)
T ss_dssp             ----------------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEE
T ss_pred             -----------ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceE
Confidence                       1112334578987543221               135789999999999999999999999986 4899


Q ss_pred             EEccCcccChhHHHHHHhccCCCC
Q 008045          548 VLGSSSLDDPPQFITKLKMLTAHE  571 (579)
Q Consensus       548 ~igsT~i~~~~~fl~~l~~l~~~~  571 (579)
                      +||||+|+||.+||++|+.|+++.
T Consensus       566 ilG~t~il~p~~Fl~~l~~l~~~~  589 (594)
T 1dn1_A          566 LIGSTHILTPQKLLDTLKKLNKTD  589 (594)
T ss_dssp             EEEESSEECHHHHHHHHTTTTSCS
T ss_pred             EEeeCCcCCHHHHHHHHHHhCCCc
Confidence            999999999999999999998765
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 579
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-112
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-109
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-108
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  345 bits (885), Expect = e-112
 Identities = 150/578 (25%), Positives = 273/578 (47%), Gaps = 66/578 (11%)

Query: 1   MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
           +EA+Y I PT+E+V   ++D     +P Y+ A +FF+     EL   + K ST    I  
Sbjct: 67  LEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKT 125

Query: 60  LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 119
           L+E+N+ +   +SQ F  D     +  + +   +Q         A +IAT+ A+L E+P 
Sbjct: 126 LKEINIAFLPYESQIFSLDSPDTFQVYY-NPSRAQGGIPNKERCAEQIATLCATLGEYPS 184

Query: 120 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQ 179
           VRYR+    +A    +F  LV  KL     +       T+   P  +  +LLILDR  D 
Sbjct: 185 VRYRSDFDENA----SFAQLVQQKL-----DAYRADDPTMGEGPQKDRSQLLILDRGFDP 235

Query: 180 IAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIA 239
           I+P++HE T+ A+ +DLL +E + Y  +  +       +KEVLL+E D +WVE+RH HIA
Sbjct: 236 ISPLLHELTFQAMAYDLLPIENDVY--KYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIA 293

Query: 240 DASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEI 299
             S+ + +K+  F  + +                +DL ++++ +PQY +++ K S H+ +
Sbjct: 294 VVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHL 347

Query: 300 AGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLT-------AKEDITRENKLRLLM 352
           A    +  ++  + +L ++EQDL  G     + I+            + I+  +K+R+++
Sbjct: 348 AEDCMKQYQQH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIIL 406

Query: 353 IVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHK 412
           +   I+      E    L++ A + A++   +N+M+ LG  +                ++
Sbjct: 407 L-YIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNR 465

Query: 413 KKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSAL 472
           K+R         + T+Q+SR+ P +++++E   +++L    YP +N   P          
Sbjct: 466 KER-------QADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR--------- 509

Query: 473 TNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSE 532
               P+     S R   W + +                    K G R+ +F+VGG + SE
Sbjct: 510 ----PSCQQPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSE 550

Query: 533 LRVCHKLT--AKLNREVVLGSSSLDDPPQFITKLKMLT 568
           +R  +++T  AK N EV+LGS+ +  P   +  L+ ++
Sbjct: 551 MRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 588
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query579
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-85  Score=730.74  Aligned_cols=506  Identities=28%  Similarity=0.515  Sum_probs=409.4

Q ss_pred             CcEEEEecCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCC
Q 008045            1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDD   79 (579)
Q Consensus         1 ~~aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~   79 (579)
                      ++|||||+||.+||++|++|+++ ..++|++|||+|++.+|+.++++||+ .++++.|.+|.|+++||+|+|+|+|+|++
T Consensus        68 ~~aIy~i~Pt~~ni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~-~~~~~~i~~v~e~~~df~~le~d~fsl~~  146 (589)
T d1dn1a_          68 LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDS  146 (589)
T ss_dssp             SEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCC
T ss_pred             CCEEEEEcCCHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCccccCCeEEEEecceeeCCCCEEEecC
Confidence            58999999999999999999975 23589999999999999999999997 46788999999999999999999999999


Q ss_pred             cchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhc
Q 008045           80 ERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTI  159 (579)
Q Consensus        80 p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~  159 (579)
                      |++|..+|.+++ .......++++|++|+++|.++|.+|.|||+|+.            ..|+++|+.+++.+..+.++.
T Consensus       147 ~~~~~~~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~~~~la~~l~~~l~~~~~~~  213 (589)
T d1dn1a_         147 ADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADD  213 (589)
T ss_dssp             TTHHHHHHCGGG-TTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred             CchHHHhcCCcc-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCc------------hHHHHHHHHHHHHHHHHHhcC
Confidence            999999998654 2334778999999999999999999999999874            257788999999888887655


Q ss_pred             CCCCC---CCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcc
Q 008045          160 QNFPM---SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA  236 (579)
Q Consensus       160 ~~~~~---~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~  236 (579)
                      +.++.   .++++|||+||++|++|||+|||||||||||+|||++|.|+++.+.. + ..+.+++.++.+|++|.++||+
T Consensus       214 ~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~-~-~~~~k~~~l~~~D~~~~~~r~~  291 (589)
T d1dn1a_         214 PTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI-G-EARVKEVLLDEDDDLWIALRHK  291 (589)
T ss_dssp             TTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS-S-SCEEEEEECSTTCHHHHHHTTS
T ss_pred             cccCCCcccCCceEEEeccCccccccccccccHHHHHHHHhcccCCeEEecCCCC-C-cccceEeecCCCcHHHHHhhcc
Confidence            44432   34689999999999999999999999999999999999999987432 2 2346788899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045          237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG  316 (579)
Q Consensus       237 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~  316 (579)
                      ||++|+..|.+++++++++++.  .     ..+..++++|+++|+++|+++++++.++.|++|+++|++.++ ++|.+++
T Consensus       292 ~f~~v~~~i~~~~~~~~~~~~~--~-----~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~  363 (589)
T d1dn1a_         292 HIAEVSQEVTRSLKDFSSSKRM--N-----TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLC  363 (589)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhhh--h-----ccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            9999999999999999886531  1     223557788999999999999999999999999999999995 7899999


Q ss_pred             HHhHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045          317 QLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR  388 (579)
Q Consensus       317 ~~Eq~i~~~~~~--------~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~  388 (579)
                      ++||++++|.+.        ...+++++. +..++.+|+|||+|||++++ +|++++++.++++..+++.+.+.++.+|+
T Consensus       364 ~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~d~LRL~~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~  441 (589)
T d1dn1a_         364 RVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMA  441 (589)
T ss_dssp             HHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGG
T ss_pred             HHHHHHHcCCCcchhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            999999987532        245677776 57889999999999999997 79999999999999999999999999999


Q ss_pred             HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045          389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT  468 (579)
Q Consensus       389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~  468 (579)
                      .+|....+...    ..      +......+ ....+.+|+++||+|+++++++.+.++.++++.||++..+.....+. 
T Consensus       442 ~lg~~~~~~~~----~~------~~~~~~~~-~~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~~~~-  509 (589)
T d1dn1a_         442 HLGVPIVTDST----LR------RRSKPERK-ERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFST-  509 (589)
T ss_dssp             GGTCCCBCCCG----GG------CCCCCCCC-CCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------
T ss_pred             HhCCccccCch----hh------cccccccc-cCCcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCccccccc-
Confidence            99987653211    10      11111111 13567889999999999999999999999999999986543221110 


Q ss_pred             CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhCC-CeE
Q 008045          469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REV  547 (579)
Q Consensus       469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~~-~~i  547 (579)
                                  +....+.+.|.+.+.++               ....++++||||||||||+|+++||+|+++.| ++|
T Consensus       510 ------------~~~~~~~~~~~~~~~~~---------------~~~~~~~viVF~vGGvTy~E~~~l~~l~~~~~~~~i  562 (589)
T d1dn1a_         510 ------------TAVSARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEV  562 (589)
T ss_dssp             ----------------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEE
T ss_pred             ------------cccccccccccccCCCC---------------cCCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCceE
Confidence                        11111223444332211               11356889999999999999999999998876 699


Q ss_pred             EEccCcccChhHHHHHHhccCCCC
Q 008045          548 VLGSSSLDDPPQFITKLKMLTAHE  571 (579)
Q Consensus       548 ~igsT~i~~~~~fl~~l~~l~~~~  571 (579)
                      +||||+|+||++||++|++|++++
T Consensus       563 iiGsT~iln~~~fl~~l~~L~~~~  586 (589)
T d1dn1a_         563 LIGSTHILTPQKLLDTLKKLNKTD  586 (589)
T ss_dssp             EEEESSEECHHHHHHHHTTTTSCS
T ss_pred             EEEeCCEecHHHHHHHHHHhCCcc
Confidence            999999999999999999999776
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure