Citrus Sinensis ID: 008051
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | 2.2.26 [Sep-21-2011] | |||||||
| Q570C0 | 594 | Protein TRANSPORT INHIBIT | yes | no | 0.958 | 0.934 | 0.573 | 0.0 | |
| Q7XVM8 | 575 | Transport inhibitor respo | yes | no | 0.967 | 0.973 | 0.555 | 0.0 | |
| Q9LPW7 | 577 | Protein AUXIN SIGNALING F | no | no | 0.967 | 0.970 | 0.537 | 1e-180 | |
| Q9LW29 | 575 | Protein AUXIN SIGNALING F | no | no | 0.965 | 0.972 | 0.543 | 1e-176 | |
| Q9ZR12 | 585 | GRR1-like protein 1 OS=Ar | no | no | 0.967 | 0.957 | 0.530 | 1e-174 | |
| Q2R3K5 | 568 | Transport inhibitor respo | no | no | 0.956 | 0.975 | 0.508 | 1e-165 | |
| Q0DKP3 | 587 | Transport inhibitor respo | no | no | 0.918 | 0.906 | 0.539 | 1e-158 | |
| Q9LTX2 | 619 | Transport inhibitor respo | no | no | 0.968 | 0.906 | 0.492 | 1e-157 | |
| Q8RWQ8 | 623 | F-box protein FBX14 OS=Ar | no | no | 0.967 | 0.898 | 0.476 | 1e-154 | |
| O04197 | 592 | Coronatine-insensitive pr | no | no | 0.962 | 0.940 | 0.320 | 3e-82 |
| >sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/560 (57%), Positives = 404/560 (72%), Gaps = 5/560 (0%)
Query: 19 KQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILS 78
++ + V + + KD NS SLVCK WYE E+ R VFIGNCYAVSP + RRFP + S
Sbjct: 11 EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70
Query: 79 VTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFP 138
V LKGKP F+DFNLVP WG ++PW+ A + Y LEE+RLKRM V+D+ LE +A SF
Sbjct: 71 VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130
Query: 139 NFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLN 198
NFKVL LSSC+GFSTDGLAAIA C+NL ELD++E+ ++D+SG WLS FP+++TSL LN
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190
Query: 199 FANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELT 258
+ + SEV F ALE+LV+RC +LK LK+N+++ LE+L LL APQL +LGTG ++ E+
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250
Query: 259 DDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLL 318
D + L A + CK + LSG W A Y PA+ VC+ LT LNLSYAT+ S +LVKLL
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310
Query: 319 MHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHG 378
CP L+RLWVLD +ED GLE + S+C L ELRVFP++PF E +TE G ++VS G
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370
Query: 379 CPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRT 438
CP+L+ VLYFC+ MTNAA+ TI RN PN T FRLCI+ P PDY+T EP+D FGA+V
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430
Query: 439 CTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRD 498
C +L+RLSLSGLLTD FEYIG YAK +E+LSVAFAG SD GM VL GC LRK EIRD
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490
Query: 499 CPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDNQ--- 555
CPFGD ALL+ K E+MRSLWMS+C+V+ CKLL K P+LNVEVI E + D++
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550
Query: 556 --ADKVYVYRTVAGPRKDAP 573
++V++YRTVAGPR D P
Sbjct: 551 CPVERVFIYRTVAGPRFDMP 570
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Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. The SCF(TIR1) E3 ubiquitin ligase complex is involved in auxin-mediated signaling pathway that regulate root and hypocotyl growth, lateral root formation, cell elongation, and gravitropism. Appears to allow pericycle cells to overcome G2 arrest prior to lateral root development. Plays a role in ethylene signaling in roots. Confers sensitivity to the virulent bacterial pathogen P.syringae. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZR12|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2R3K5|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0DKP3|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWQ8|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04197|COI1_ARATH Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| 224078846 | 579 | f-box family protein [Populus trichocarp | 0.967 | 0.967 | 0.808 | 0.0 | |
| 224114089 | 579 | f-box family protein [Populus trichocarp | 0.967 | 0.967 | 0.789 | 0.0 | |
| 359495481 | 583 | PREDICTED: protein TRANSPORT INHIBITOR R | 1.0 | 0.993 | 0.747 | 0.0 | |
| 255567413 | 589 | TRANSPORT INHIBITOR RESPONSE 1 protein, | 0.967 | 0.950 | 0.778 | 0.0 | |
| 357475931 | 586 | Protein AUXIN SIGNALING F-BOX [Medicago | 0.998 | 0.986 | 0.740 | 0.0 | |
| 356519534 | 578 | PREDICTED: protein TRANSPORT INHIBITOR R | 0.996 | 0.998 | 0.741 | 0.0 | |
| 356527933 | 578 | PREDICTED: protein TRANSPORT INHIBITOR R | 0.998 | 1.0 | 0.739 | 0.0 | |
| 147827158 | 620 | hypothetical protein VITISV_016565 [Viti | 1.0 | 0.933 | 0.685 | 0.0 | |
| 449434354 | 584 | PREDICTED: protein AUXIN SIGNALING F-BOX | 1.0 | 0.991 | 0.705 | 0.0 | |
| 302144176 | 553 | unnamed protein product [Vitis vinifera] | 0.910 | 0.952 | 0.730 | 0.0 |
| >gi|224078846|ref|XP_002305651.1| f-box family protein [Populus trichocarpa] gi|222848615|gb|EEE86162.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/560 (80%), Positives = 505/560 (90%)
Query: 20 QAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILSV 79
+ + +VL+LL SHKD ++ SLVCKDWY AE SRTHVFIGNCY+VSPEI+ RRFP I SV
Sbjct: 17 EVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRFPIIKSV 76
Query: 80 TLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPN 139
TLKGKPRFSDFNLVP++WGAD+HPWLV FA +YP LEELRLKRM+VSDESLEFLAV+FPN
Sbjct: 77 TLKGKPRFSDFNLVPENWGADVHPWLVVFATKYPFLEELRLKRMAVSDESLEFLAVNFPN 136
Query: 140 FKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNF 199
FKVLSL SCDGFSTDGLAAIAT+CK+LT+LDIQENGI+D SG WLSCFPE+FTSLEVLNF
Sbjct: 137 FKVLSLLSCDGFSTDGLAAIATHCKSLTQLDIQENGIDDKSGGWLSCFPENFTSLEVLNF 196
Query: 200 ANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTD 259
AN+N++V+FDALE+LVSRCKSLK LKVNKSISLE LQ+LLV APQL +LGTGSF+ ELT
Sbjct: 197 ANLNTDVNFDALERLVSRCKSLKVLKVNKSISLEHLQRLLVCAPQLTELGTGSFTPELTT 256
Query: 260 DQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLM 319
Q AELESAFN+CKN+H LSGLW+ATALY P L PVC+NLTFLNLSY L S EL LL
Sbjct: 257 RQYAELESAFNQCKNLHTLSGLWEATALYLPVLYPVCSNLTFLNLSYTFLQSLELASLLR 316
Query: 320 HCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGC 379
CP L+RLWVLDTV D+GLEAVGS+CPLLEELRVFPADPFDEEI +GVTEAGF+AVS+GC
Sbjct: 317 QCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGC 376
Query: 380 PRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTC 439
RL YVLYFC+ MTNAAVATIV+NCP+FT FRLCIMNPGQPDY+TNEPMDEAFGAVVRTC
Sbjct: 377 RRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIMNPGQPDYLTNEPMDEAFGAVVRTC 436
Query: 440 TNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDC 499
T LQRLS+SGLLTDLTFEYIGQYAKNLE LSVAFAGSSD GMQCVL GCPKLRK EIRDC
Sbjct: 437 TKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSSDRGMQCVLEGCPKLRKLEIRDC 496
Query: 500 PFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDNQADKV 559
PFG+AALLSGL+K ESMRSLWMSACNVTM+GC+LLA + PRLNVEV+KE SDD+QADKV
Sbjct: 497 PFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLLAREMPRLNVEVMKEDGSDDSQADKV 556
Query: 560 YVYRTVAGPRKDAPPSVITL 579
YVYR+VAGPR+DAPP V+TL
Sbjct: 557 YVYRSVAGPRRDAPPCVLTL 576
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114089|ref|XP_002316664.1| f-box family protein [Populus trichocarpa] gi|222859729|gb|EEE97276.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359495481|ref|XP_002271412.2| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255567413|ref|XP_002524686.1| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] gi|223536047|gb|EEF37705.1| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357475931|ref|XP_003608251.1| Protein AUXIN SIGNALING F-BOX [Medicago truncatula] gi|355509306|gb|AES90448.1| Protein AUXIN SIGNALING F-BOX [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356519534|ref|XP_003528427.1| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356527933|ref|XP_003532560.1| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147827158|emb|CAN66468.1| hypothetical protein VITISV_016565 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449434354|ref|XP_004134961.1| PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Cucumis sativus] gi|449528142|ref|XP_004171065.1| PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|302144176|emb|CBI23303.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| UNIPROTKB|B9H216 | 579 | FBL5 "F-box family protein" [P | 0.967 | 0.967 | 0.808 | 1.2e-248 | |
| UNIPROTKB|B9HZ12 | 579 | FBL6 "F-box family protein" [P | 0.967 | 0.967 | 0.789 | 2.4e-243 | |
| UNIPROTKB|B9SFB7 | 589 | RCOM_1095990 "TRANSPORT INHIBI | 0.967 | 0.950 | 0.778 | 5.8e-240 | |
| UNIPROTKB|B9S3W2 | 585 | RCOM_0556140 "TRANSPORT INHIBI | 0.968 | 0.958 | 0.567 | 7.7e-174 | |
| UNIPROTKB|B9I9W7 | 584 | FBL1 "F-box family protein" [P | 0.968 | 0.960 | 0.565 | 3.8e-172 | |
| TAIR|locus:2099237 | 594 | TIR1 "AT3G62980" [Arabidopsis | 0.958 | 0.934 | 0.573 | 1e-171 | |
| UNIPROTKB|B9IBT6 | 584 | FBL2 "F-box family protein" [P | 0.968 | 0.960 | 0.551 | 9.1e-171 | |
| UNIPROTKB|A4KA30 | 586 | TIR1 "Transport inhibitor resp | 0.967 | 0.955 | 0.560 | 1.5e-170 | |
| UNIPROTKB|A5ARV5 | 581 | VITISV_038840 "Putative unchar | 0.968 | 0.965 | 0.556 | 9.4e-169 | |
| UNIPROTKB|B9RH07 | 571 | RCOM_1445820 "TRANSPORT INHIBI | 0.963 | 0.977 | 0.559 | 9.4e-169 |
| UNIPROTKB|B9H216 FBL5 "F-box family protein" [Populus trichocarpa (taxid:3694)] | Back alignment and assigned GO terms |
|---|
Score = 2395 (848.1 bits), Expect = 1.2e-248, P = 1.2e-248
Identities = 453/560 (80%), Positives = 505/560 (90%)
Query: 20 QAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILSV 79
+ + +VL+LL SHKD ++ SLVCKDWY AE SRTHVFIGNCY+VSPEI+ RRFP I SV
Sbjct: 17 EVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRFPIIKSV 76
Query: 80 TLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPN 139
TLKGKPRFSDFNLVP++WGAD+HPWLV FA +YP LEELRLKRM+VSDESLEFLAV+FPN
Sbjct: 77 TLKGKPRFSDFNLVPENWGADVHPWLVVFATKYPFLEELRLKRMAVSDESLEFLAVNFPN 136
Query: 140 FKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNF 199
FKVLSL SCDGFSTDGLAAIAT+CK+LT+LDIQENGI+D SG WLSCFPE+FTSLEVLNF
Sbjct: 137 FKVLSLLSCDGFSTDGLAAIATHCKSLTQLDIQENGIDDKSGGWLSCFPENFTSLEVLNF 196
Query: 200 ANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTD 259
AN+N++V+FDALE+LVSRCKSLK LKVNKSISLE LQ+LLV APQL +LGTGSF+ ELT
Sbjct: 197 ANLNTDVNFDALERLVSRCKSLKVLKVNKSISLEHLQRLLVCAPQLTELGTGSFTPELTT 256
Query: 260 DQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLM 319
Q AELESAFN+CKN+H LSGLW+ATALY P L PVC+NLTFLNLSY L S EL LL
Sbjct: 257 RQYAELESAFNQCKNLHTLSGLWEATALYLPVLYPVCSNLTFLNLSYTFLQSLELASLLR 316
Query: 320 HCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGC 379
CP L+RLWVLDTV D+GLEAVGS+CPLLEELRVFPADPFDEEI +GVTEAGF+AVS+GC
Sbjct: 317 QCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGC 376
Query: 380 PRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTC 439
RL YVLYFC+ MTNAAVATIV+NCP+FT FRLCIMNPGQPDY+TNEPMDEAFGAVVRTC
Sbjct: 377 RRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIMNPGQPDYLTNEPMDEAFGAVVRTC 436
Query: 440 TNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDC 499
T LQRLS+SGLLTDLTFEYIGQYAKNLE LSVAFAGSSD GMQCVL GCPKLRK EIRDC
Sbjct: 437 TKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSSDRGMQCVLEGCPKLRKLEIRDC 496
Query: 500 PFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDNQADKV 559
PFG+AALLSGL+K ESMRSLWMSACNVTM+GC+LLA + PRLNVEV+KE SDD+QADKV
Sbjct: 497 PFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLLAREMPRLNVEVMKEDGSDDSQADKV 556
Query: 560 YVYRTVAGPRKDAPPSVITL 579
YVYR+VAGPR+DAPP V+TL
Sbjct: 557 YVYRSVAGPRRDAPPCVLTL 576
|
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| UNIPROTKB|B9HZ12 FBL6 "F-box family protein" [Populus trichocarpa (taxid:3694)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B9SFB7 RCOM_1095990 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B9S3W2 RCOM_0556140 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B9I9W7 FBL1 "F-box family protein" [Populus trichocarpa (taxid:3694)] | Back alignment and assigned GO terms |
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| TAIR|locus:2099237 TIR1 "AT3G62980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B9IBT6 FBL2 "F-box family protein" [Populus trichocarpa (taxid:3694)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4KA30 TIR1 "Transport inhibitor response 1" [Gossypium hirsutum (taxid:3635)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A5ARV5 VITISV_038840 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B9RH07 RCOM_1445820 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q570C0 | TIR1_ARATH | No assigned EC number | 0.5732 | 0.9585 | 0.9343 | yes | no |
| Q7XVM8 | TIR1B_ORYSJ | No assigned EC number | 0.5551 | 0.9671 | 0.9739 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 579 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 3e-08 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 8e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.001 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 0.003 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 125 VSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDI-QENGIEDISGSW 183
+ DE L LA S PN +VL L +C+ + G+ A+ATNC L +++ + I+
Sbjct: 65 IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVS 124
Query: 184 LSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRC-KSLKDLKVN 227
LS ++ T L+ + FA +V + +L S C KSL+ L +N
Sbjct: 125 LSALGKNCTFLQTVGFA--GCDVTDKGVWELASGCSKSLERLSLN 167
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 100.0 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.9 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.86 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.85 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.84 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.7 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.63 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.61 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.54 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.49 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.43 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.43 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.4 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.39 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.22 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.19 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.15 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.0 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.96 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.81 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.61 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.57 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.5 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.45 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.45 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.39 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.36 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.33 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.27 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.26 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.07 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.02 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.97 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.91 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 97.9 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.8 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.74 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.58 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.52 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.31 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.05 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.01 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.96 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.92 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.73 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 96.73 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.65 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 96.61 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.59 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.38 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.2 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.16 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.11 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.8 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.68 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.53 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.44 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.4 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 95.05 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 94.94 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 94.55 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 94.34 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 94.25 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 93.55 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 93.47 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 92.36 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 91.83 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 91.78 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 91.08 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 90.94 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 87.71 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 87.24 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 86.77 | |
| PF09372 | 97 | PRANC: PRANC domain; InterPro: IPR018272 This pres | 82.79 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 80.68 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=262.72 Aligned_cols=373 Identities=23% Similarity=0.372 Sum_probs=268.6
Q ss_pred cccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHh--hcccceEEecccccc--Ch--HHHHhhCCCceEEEcCCCCcc
Q 008051 14 EVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAE--QLSRTHVFIGNCYAV--SP--EILTRRFPNILSVTLKGKPRF 87 (579)
Q Consensus 14 ~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~--~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~L~l~~~~~~ 87 (579)
.-.||+|++..||++|+ .+.+.+++.||+.|+..| +..|.++.+...... .+ +.+.+++.
T Consensus 72 ~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcg------------- 137 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCG------------- 137 (483)
T ss_pred cccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhc-------------
Confidence 34599999999999999 899999999999999986 455666554332211 11 22333332
Q ss_pred ccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcc-cChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCC
Q 008051 88 SDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMS-VSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNL 166 (579)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 166 (579)
..|++|.+.++. +.+..+..+..++|++++|.+.+|.++++..+..+.+.|++|
T Consensus 138 -------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l 192 (483)
T KOG4341|consen 138 -------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKL 192 (483)
T ss_pred -------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchh
Confidence 244455555543 445556666666677777777777666666666666667777
Q ss_pred CeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCe
Q 008051 167 TELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLV 246 (579)
Q Consensus 167 ~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 246 (579)
++|++..|. .++...+..+...|++|++|+++.|..+.
T Consensus 193 ~~l~L~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~------------- 230 (483)
T KOG4341|consen 193 RHLNLHSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQIS------------- 230 (483)
T ss_pred hhhhhcccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCchhh-------------
Confidence 766665543 13444444455566666666665554211
Q ss_pred eecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcCCcCc
Q 008051 247 DLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHCPLLK 325 (579)
Q Consensus 247 ~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~ 325 (579)
..++..+..++..++.+...||. ..
T Consensus 231 ---------------------------------------~~gv~~~~rG~~~l~~~~~kGC~e~~--------------- 256 (483)
T KOG4341|consen 231 ---------------------------------------GNGVQALQRGCKELEKLSLKGCLELE--------------- 256 (483)
T ss_pred ---------------------------------------cCcchHHhccchhhhhhhhccccccc---------------
Confidence 11222233333334444333443 22
Q ss_pred EEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhh-hhcCcCCCHHHHHHHHHhC
Q 008051 326 RLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYV-LYFCQAMTNAAVATIVRNC 404 (579)
Q Consensus 326 ~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L-~~~~~~~~~~~l~~l~~~~ 404 (579)
++.+..+..+++-+.++++..|+. +++.++..+..+|..|+.| ..+|..+++..+.++.+++
T Consensus 257 ---------le~l~~~~~~~~~i~~lnl~~c~~--------lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 257 ---------LEALLKAAAYCLEILKLNLQHCNQ--------LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred ---------HHHHHHHhccChHhhccchhhhcc--------ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 334444445566666677666642 8888888888888889999 5678889999999999999
Q ss_pred CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc--ccChHHHHHHHhcccCcCeeeccccC-CChHHH
Q 008051 405 PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG--LLTDLTFEYIGQYAKNLELLSVAFAG-SSDWGM 481 (579)
Q Consensus 405 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~ 481 (579)
++|+.|.+..| .+++ +.++..+..+++.|+.+++.+ .+.|..+..+..+|+.|+.|.++.|. ++|+|+
T Consensus 320 ~~L~~l~l~~c-----~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 320 HNLQVLELSGC-----QQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred CceEEEecccc-----chhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 99999999874 4577 899999999999999999988 57787888999999999999999998 799988
Q ss_pred HHHHhC---CCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc-cChhHHHHHhhcCCCceEEEec
Q 008051 482 QCVLRG---CPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN-VTMDGCKLLASKKPRLNVEVIK 547 (579)
Q Consensus 482 ~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~~p~l~~~~~~ 547 (579)
..+-.. ...|+.+.+++|+.+.+...+.+..|++|+.+++.+|+ ++.+++..++.++|+++|.-+-
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 777443 66899999999987777788999999999999999999 9999999999999999886554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins | Back alignment and domain information |
|---|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 579 | ||||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 0.0 | ||
| 3ogk_B | 592 | Structure Of Coi1-Ask1 In Complex With Coronatine A | 2e-83 |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
|
| >pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 542 bits (1397), Expect = 0.0
Identities = 322/563 (57%), Positives = 403/563 (71%), Gaps = 5/563 (0%)
Query: 22 ITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILSVTL 81
+ V + + KD NS SLVCK WYE E+ R VFIGNCYAVSP + RRFP + SV L
Sbjct: 14 LEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVEL 73
Query: 82 KGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFK 141
KGKP F+DFNLVP WG ++PW+ A + Y LEE+RLKRM V+D+ LE +A SF NFK
Sbjct: 74 KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFK 133
Query: 142 VLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFAN 201
VL LSSC+GFSTDGLAAIA C+NL ELD++E+ ++D+SG WLS FP+++TSL LN +
Sbjct: 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193
Query: 202 VNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQ 261
+ SEV F ALE+LV+RC +LK LK+N+++ LE+L LL APQL +LGTG ++ E+ D
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253
Query: 262 RAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHC 321
+ L A + CK + LSG W A Y PA+ VC+ LT LNLSYAT+ S +LVKLL C
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313
Query: 322 PLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPR 381
P L+RLWVLD +ED GLE + S+C L ELRVFP++PF E +TE G ++VS GCP+
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373
Query: 382 LQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTN 441
L+ VLYFC+ MTNAA+ TI RN PN T FRLCI+ P PDY+T EP+D FGA+V C +
Sbjct: 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433
Query: 442 LQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPF 501
L+RLSLSGLLTD FEYIG YAK +E+LSVAFAG SD GM VL GC LRK EIRDCPF
Sbjct: 434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493
Query: 502 GDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDN-----QA 556
GD ALL+ K E+MRSLWMS+C+V+ CKLL K P+LNVEVI E + D+
Sbjct: 494 GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPV 553
Query: 557 DKVYVYRTVAGPRKDAPPSVITL 579
++V++YRTVAGPR D P V +
Sbjct: 554 ERVFIYRTVAGPRFDMPGFVWNM 576
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.98 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.93 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.84 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.84 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.84 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.82 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.82 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.81 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.8 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.8 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.8 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.8 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.79 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.77 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.77 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.77 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.76 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.75 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.75 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.74 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.73 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.72 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.71 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.71 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.7 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.7 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.7 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.7 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.7 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.68 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.68 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.66 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.66 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.64 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.62 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.6 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.59 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.57 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.5 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.48 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.47 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.45 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.42 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.42 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.41 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.37 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.37 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.36 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.36 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.35 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.34 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.26 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.24 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.24 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.24 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.24 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.23 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.21 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.2 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.19 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.19 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.19 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.18 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.15 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.13 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.13 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.12 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.12 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.11 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.1 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.07 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.06 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.06 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.05 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.03 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.97 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.97 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.96 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.95 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.94 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.89 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.89 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.88 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.87 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.86 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.83 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.79 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.77 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.74 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.69 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.66 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.65 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.64 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.64 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.63 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.54 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.53 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.5 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.49 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.48 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.46 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.44 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.43 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.41 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.39 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.37 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.37 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.28 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.24 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.24 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.24 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.23 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.17 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.17 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.11 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.09 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.03 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.0 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 97.97 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.95 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.91 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 97.88 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.85 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.85 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.74 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.74 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.72 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.69 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 97.65 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 97.53 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.53 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.5 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.47 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.44 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.33 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.32 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.24 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.23 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.14 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.11 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.1 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.53 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.52 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.13 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 95.92 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.86 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 82.64 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 82.56 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-61 Score=502.87 Aligned_cols=567 Identities=57% Similarity=0.996 Sum_probs=503.3
Q ss_pred cccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhhcccceEEeccccccChHHHHhhCCCceEEEcCCCCccccCC
Q 008051 12 TSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILSVTLKGKPRFSDFN 91 (579)
Q Consensus 12 ~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 91 (579)
+.|++||+||+.+||+||+..+|+.++++|||+|+.+..+.|..+.+..++...+..+.+++++++++++++++.+.+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence 67999999999999999997799999999999999998788889999999999999999999999999999999888888
Q ss_pred CCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEec
Q 008051 92 LVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDI 171 (579)
Q Consensus 92 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 171 (579)
..+..|+.....|+..+...+++|++|+++++.+++..+..+...+++|++|++.+|..++..++..+..+|++|++|++
T Consensus 84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 88999999999999999999999999999999999999999987899999999999988888889999889999999999
Q ss_pred cCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeeccc
Q 008051 172 QENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 172 ~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 251 (579)
++|.+++.+..++..+...+++|++|+++++.+.++...+..+...+++|++|++.++....+++..+..+++|++|+++
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 99999988888888888899999999999886558889999998999999999999998788899999999999999998
Q ss_pred ccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccC
Q 008051 252 SFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLD 331 (579)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 331 (579)
.+........+..+...+.+|++|+.+.+++......+..+...+++|++|++++|.+++..+..++..+++|+.|++.+
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 77765566667777778899999999977777777777777778999999999999988888888889999999999999
Q ss_pred ccChHHHHHHhccCCCCceEEEecCCCCc-chhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceE
Q 008051 332 TVEDRGLEAVGSSCPLLEELRVFPADPFD-EEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCF 410 (579)
Q Consensus 332 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L 410 (579)
+..+.++..+...+++|++|++.+|+... ..+.. +++.++..+..+|++|+.|.+.++.+++..+..+...+|+|+.|
T Consensus 324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~-l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA-LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC-CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCC-CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 88888888888889999999996543210 01233 88899999888899999999899999999999999899999999
Q ss_pred EeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCc
Q 008051 411 RLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPK 490 (579)
Q Consensus 411 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 490 (579)
++..++..+|+.++..+.+.++..++..+++|+.|++++.+++.++..+...+++|+.|++++|.+++.++..++.++++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 99955433477888888788999899999999999998888999999998889999999999999999999998888999
Q ss_pred CcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc-----cccccceeEEEEee
Q 008051 491 LRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES-----DDNQADKVYVYRTV 565 (579)
Q Consensus 491 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~-----~~~~~~~~~~~~~~ 565 (579)
|++|++++|.+++.++...+.++++|+.|++++|+++..|++.+...+|+++++++++... +...++++|+|++.
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEECS
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhhcc
Confidence 9999999999998888778888999999999999999999999999999999999998743 34566899999999
Q ss_pred cCCCCCCCCCcccC
Q 008051 566 AGPRKDAPPSVITL 579 (579)
Q Consensus 566 ~~~~~~~~~~~~~~ 579 (579)
.+||.++|+.++++
T Consensus 563 ~~~~~~~p~~~~~l 576 (594)
T 2p1m_B 563 AGPRFDMPGFVWNM 576 (594)
T ss_dssp SCSCSCCCTTEEEC
T ss_pred CCCCCCCCCceEec
Confidence 99999999988764
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 579 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 9e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 4e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 9e-11
Identities = 45/238 (18%), Positives = 76/238 (31%), Gaps = 11/238 (4%)
Query: 114 SLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQE 173
+ R R + E S + + LS+ L I + C L L ++
Sbjct: 24 GVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEG 80
Query: 174 NGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLE 233
+ D + L+ +L LN + S AL+ L+S C L +L ++
Sbjct: 81 LRLSDPIVNTLAKNS----NLVRLNL-SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135
Query: 234 QLQKLLVLAPQLVDLGTGSFS--QELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPA 291
+ + +A + + S ++ LS F
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195
Query: 292 LSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLE 349
L L+LS E + L P LK L V V D L+ + + P L+
Sbjct: 196 FFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.9 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.85 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.84 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.78 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.67 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.55 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.89 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.8 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.74 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.65 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.64 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.64 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.64 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.62 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.62 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.62 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.61 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.6 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.59 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.57 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.56 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.56 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.55 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.53 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.47 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.46 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.42 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.39 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.32 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.24 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.24 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.12 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 97.93 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.91 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.89 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.79 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.48 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.2 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.0 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.94 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.74 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-21 Score=195.40 Aligned_cols=410 Identities=17% Similarity=0.166 Sum_probs=258.8
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHH---HHhhCCCCCeEeccCCCccccccccccccc-
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAA---IATNCKNLTELDIQENGIEDISGSWLSCFP- 188 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~- 188 (579)
++|++|+++++.+++..+..+...++++++|+|.+| ++++.++.. ++..+++|++|++++|.+++.+...+....
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 357788888888888777777777788888888888 677765543 345678888888888877776655543322
Q ss_pred ccCCccceeecccccCCCCHHH---HHHHHHhCCCCCeeEecCccChH-HHHHHHhhC----CCCeeecccccccccChh
Q 008051 189 ESFTSLEVLNFANVNSEVDFDA---LEKLVSRCKSLKDLKVNKSISLE-QLQKLLVLA----PQLVDLGTGSFSQELTDD 260 (579)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~~----~~L~~L~l~~~~~~~~~~ 260 (579)
....+|++|+++++. ++... +...+..+++|++|++.++.-.. +...+.... .......... ......
T Consensus 81 ~~~~~L~~L~L~~n~--it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~ 156 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY--CSLSAA 156 (460)
T ss_dssp STTCCCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT--SCCBGG
T ss_pred cCCCCCCEEECCCCC--ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc--cccchh
Confidence 234578888888773 44433 33444567788888887775221 122221111 1111111111 111222
Q ss_pred hHHHHHHHHhcCccccccc-CccccccchHhh----hhhcCCCCCeeeeccccCCcHH---HHHHHHcCCcCcEEeccCc
Q 008051 261 QRAELESAFNKCKNIHKLS-GLWQATALYFPA----LSPVCANLTFLNLSYATLGSSE---LVKLLMHCPLLKRLWVLDT 332 (579)
Q Consensus 261 ~~~~l~~~~~~~~~L~~L~-~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~~ 332 (579)
....+...+.....++.+. .........+.. +.........+.+.++...... ........+.++.+.+.++
T Consensus 157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n 236 (460)
T d1z7xw1 157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236 (460)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence 3333334444445555443 222222222221 2233445677888887744333 3345567889999998764
Q ss_pred -cChHHH----HHHhccCCCCceEEEecCCCCcchhcccchhHHHH---HHHcCCCcchhhhhcCcCCCHHHHHHHHHh-
Q 008051 333 -VEDRGL----EAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFL---AVSHGCPRLQYVLYFCQAMTNAAVATIVRN- 403 (579)
Q Consensus 333 -~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~- 403 (579)
..+.++ .........++.++++++. +...... ......+.++.+.+..+.+++.++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~---------i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l 307 (460)
T d1z7xw1 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECG---------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 307 (460)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSC---------CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cccccccchhhccccccccccccccccccc---------ccccccccccccccccccccccccccccccccccchhhccc
Confidence 333222 2333456789999998653 4433322 223446778888888888988888777543
Q ss_pred ---CCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHh----cccCcCeeeccccC
Q 008051 404 ---CPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQ----YAKNLELLSVAFAG 475 (579)
Q Consensus 404 ---~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~----~~~~L~~L~l~~~~ 475 (579)
...|+.+.+.++. ++... ...+......+++|++|++++ .+++.++..+.. ..+.|+.|++++|.
T Consensus 308 ~~~~~~L~~l~l~~~~------l~~~~-~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 380 (460)
T d1z7xw1 308 LEPGCQLESLWVKSCS------FTAAC-CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380 (460)
T ss_dssp TSTTCCCCEEECTTSC------CBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cccccccccccccccc------hhhhh-hhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence 4579999988654 33110 123444566788999999998 588887776654 45679999999999
Q ss_pred CChHHHHHH---HhCCCcCcEEEecCCCCCHHHHHHHHh----cCCCCcEEEecccccChhHHHH---HhhcCCCceE
Q 008051 476 SSDWGMQCV---LRGCPKLRKFEIRDCPFGDAALLSGLD----KCESMRSLWMSACNVTMDGCKL---LASKKPRLNV 543 (579)
Q Consensus 476 i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~i~~~~~~~---l~~~~p~l~~ 543 (579)
+++.++..+ +..+++|++|+|++|++++.++..+.+ +..+|+.|++.+|.++.++... +.+..|+++|
T Consensus 381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~ 458 (460)
T d1z7xw1 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458 (460)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 999887665 445899999999999999987765543 3447999999999988766544 4667788865
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
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| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
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| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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